Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 192:6ff9d035b26b Orthanc-1.5.1
fix
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Sat, 15 Dec 2018 10:50:45 +0100 |
parents | bc8bc83465dc |
children | 9f7ae64c0fda |
rev | line source |
---|---|
22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
130
50cd127e5330
upgrade to year 2018
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
128
diff
changeset
|
8 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
14 | 24 import tempfile |
3 | 25 import unittest |
36 | 26 import base64 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
27 import copy |
3 | 28 |
11 | 29 from PIL import ImageChops |
3 | 30 from Toolbox import * |
13 | 31 from xml.dom import minidom |
3 | 32 |
33 _LOCAL = None | |
34 _REMOTE = None | |
35 | |
36 | |
37 def SetOrthancParameters(local, remote): | |
38 global _LOCAL, _REMOTE | |
39 _LOCAL = local | |
40 _REMOTE = remote | |
41 | |
42 | |
14 | 43 def ExtractDicomTags(rawDicom, tags): |
44 with tempfile.NamedTemporaryFile(delete = True) as f: | |
45 f.write(rawDicom) | |
46 f.flush() | |
45 | 47 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 48 |
49 result = [] | |
50 for tag in tags: | |
51 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
52 if match == None: | |
53 result.append('') | |
54 else: | |
55 result.append(match.group(1)) | |
56 | |
57 return result | |
58 | |
59 | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
60 def CompareLists(a, b): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
61 if len(a) != len(b): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
62 return False |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
63 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
64 for i in range(len(a)): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
65 d = a[i] - b[i] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
66 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
67 return False |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
68 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
69 return True |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
70 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
71 |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
72 def CompareTags(a, b, tagsToIgnore): |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
73 for i in tagsToIgnore: |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
74 if i in a: |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
75 del a[i] |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
76 if i in b: |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
77 del b[i] |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
78 |
123 | 79 if a.keys() == b.keys(): |
80 return True | |
81 else: | |
82 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
83 return False | |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
84 |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
85 |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
86 def CallFindScu(args): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
87 p = subprocess.Popen([ FindExecutable('findscu'), |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
88 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
89 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
90 stderr=subprocess.PIPE) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
91 return p.communicate()[1] |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
92 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
93 |
142 | 94 def GetMoveScuCommand(): |
95 return [ | |
96 FindExecutable('movescu'), | |
97 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
98 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
99 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
100 _REMOTE['Server'], | |
101 str(_REMOTE['DicomPort']) | |
102 ] | |
103 | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
104 def CallMoveScu(args): |
142 | 105 subprocess.check_call(GetMoveScuCommand() + args, |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
106 stderr=subprocess.PIPE) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
107 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
108 |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
109 |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
110 def GenerateTestSequence(): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
111 return [ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
112 { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
113 'StudyDescription': 'Hello^', |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
114 'ReferencedStudySequence' : [ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
115 { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
116 'StudyDescription': 'Toto', |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
117 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
118 { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
119 'StudyDescription': 'Tata', |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
120 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
121 ] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
122 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
123 { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
124 'StudyDescription': 'Sébastien^', |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
125 'StudyDate' : '19700202', |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
126 } |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
127 ] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
128 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
129 |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
130 |
15 | 131 |
3 | 132 class Orthanc(unittest.TestCase): |
133 def setUp(self): | |
83 | 134 if (sys.version_info >= (3, 0)): |
135 # Remove annoying warnings about unclosed socket in Python 3 | |
136 import warnings | |
137 warnings.simplefilter("ignore", ResourceWarning) | |
138 | |
3 | 139 DropOrthanc(_LOCAL) |
140 DropOrthanc(_REMOTE) | |
174 | 141 UninstallLuaCallbacks(_REMOTE) |
45 | 142 #print "In test", self._testMethodName |
44
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
43
diff
changeset
|
143 |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
144 def AssertSameImages(self, truth, url): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
145 im = GetImage(_REMOTE, url) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
146 self.assertTrue(CompareLists(truth, im.getdata())) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
147 |
3 | 148 |
149 def test_system(self): | |
177 | 150 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
151 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
152 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
153 | |
154 systemInfo = DoGet(_REMOTE, '/system') | |
155 if systemInfo["Version"] == "mainline": | |
156 print "Skipping version checks since you're currently in mainline" | |
157 return | |
158 | |
173 | 159 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
160 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
161 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
162 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
163 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 164 |
165 def test_upload(self): | |
173 | 166 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
167 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
168 | |
169 sizeDummyCT = 2472 | |
170 sizeOverwrite = 2476 | |
171 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
172 | |
3 | 173 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
183 | 174 self.assertEqual(instance, u['ID']) |
3 | 175 self.assertEqual('Success', u['Status']) |
173 | 176 |
183 | 177 if True: |
178 # New test for Orthanc 1.4.3 | |
179 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
180 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
181 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
182 | |
173 | 183 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
184 s = sizeDummyCT + j | |
185 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
186 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
187 | |
3 | 188 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
189 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
190 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
191 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
192 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
173 | 193 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
194 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
195 | |
196 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 197 self.assertEqual('20070101', i['StudyDate']) |
173 | 198 self.assertEqual('KNIX', i['PatientName']) |
199 | |
200 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
201 # Overwriting | |
202 self.assertEqual('Success', u['Status']) | |
203 else: | |
204 self.assertEqual('AlreadyStored', u['Status']) | |
205 | |
206 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
207 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
208 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
209 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
210 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
211 | |
212 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
213 # Overwriting | |
214 self.assertEqual('Success', u['Status']) | |
215 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
216 s2 = sizeOverwrite + j2 | |
217 self.assertNotEqual(s, s2) | |
218 self.assertNotEqual(j, j2) | |
219 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
220 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
221 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
222 self.assertEqual('ANOTHER', i['PatientName']) | |
223 else: | |
224 self.assertEqual('AlreadyStored', u['Status']) | |
225 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
226 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
3 | 227 |
5 | 228 def test_upload_2(self): |
3 | 229 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
230 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
231 self.assertEqual(i, instance['ID']) | |
232 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
233 instance['MainDicomTags']['SOPInstanceUID']) | |
234 | |
235 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
236 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
237 series['MainDicomTags']['SeriesInstanceUID']) | |
238 | |
239 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
240 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
241 study['MainDicomTags']['StudyInstanceUID']) | |
242 | |
243 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
244 self.assertEqual('ozp00SjY2xG', | |
245 patient['MainDicomTags']['PatientID']) | |
246 | |
247 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
248 self.assertEqual(2472, len(dicom)) | |
249 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
250 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
251 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
252 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
136
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
253 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
254 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 255 |
256 | |
5 | 257 def test_images(self): |
258 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
259 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 260 |
5 | 261 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
262 self.assertEqual("L", im.mode) | |
263 self.assertEqual(512, im.size[0]) | |
264 self.assertEqual(358, im.size[1]) | |
265 | |
266 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
267 self.assertEqual("L", im.mode) | |
268 self.assertEqual(512, im.size[0]) | |
269 self.assertEqual(358, im.size[1]) | |
270 | |
271 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
272 self.assertEqual(512, im.size[0]) | |
273 self.assertEqual(358, im.size[1]) | |
274 | |
275 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
276 self.assertEqual("L", im.mode) | |
277 self.assertEqual(512, im.size[0]) | |
278 self.assertEqual(358, im.size[1]) | |
279 | |
280 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
281 self.assertEqual("L", im.mode) | |
282 self.assertEqual(512, im.size[0]) | |
283 self.assertEqual(358, im.size[1]) | |
284 | |
285 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
286 self.assertEqual(512, im.size[0]) | |
287 self.assertEqual(358, im.size[1]) | |
64 | 288 |
289 # This is Little Endian Explicit | |
290 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
291 | |
6 | 292 |
293 def test_hierarchy(self): | |
294 UploadFolder(_REMOTE, 'Brainix/Epi') | |
295 UploadFolder(_REMOTE, 'Brainix/Flair') | |
296 UploadFolder(_REMOTE, 'Knee/T1') | |
297 UploadFolder(_REMOTE, 'Knee/T2') | |
298 | |
299 p = DoGet(_REMOTE, '/patients') | |
300 s = DoGet(_REMOTE, '/studies') | |
301 t = DoGet(_REMOTE, '/series') | |
302 self.assertEqual(2, len(p)) | |
303 self.assertEqual(2, len(s)) | |
304 self.assertEqual(4, len(t)) | |
305 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
306 | |
307 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
308 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
309 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
310 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
311 | |
312 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
313 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
314 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
315 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
316 | |
317 self.assertTrue(brainixPatient in p) | |
318 self.assertTrue(kneePatient in p) | |
319 self.assertTrue(brainixStudy in s) | |
320 self.assertTrue(kneeStudy in s) | |
321 self.assertTrue(brainixEpi in t) | |
322 self.assertTrue(brainixFlair in t) | |
323 self.assertTrue(kneeT1 in t) | |
324 self.assertTrue(kneeT2 in t) | |
325 | |
326 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
327 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
328 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
329 | |
330 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
331 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
332 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
333 | |
334 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
335 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
336 | |
337 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
338 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
339 | |
340 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
341 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
342 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
343 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
344 | |
345 for patient in p: | |
346 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
347 self.assertEqual(patient, study['ParentPatient']) | |
348 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
349 self.assertEqual(study['ID'], series['ParentStudy']) | |
350 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
351 self.assertEqual(series['ID'], instance['ParentSeries']) | |
352 | |
353 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
354 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
355 | |
356 | |
357 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
358 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
359 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
360 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
361 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
362 self.assertEqual(None, r) | |
363 | |
364 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
365 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
366 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
367 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
368 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
369 self.assertEqual('Study', r['Type']) | |
370 self.assertEqual(kneeStudy, r['ID']) | |
371 | |
372 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
373 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
374 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
375 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
376 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
377 self.assertEqual('Series', r['Type']) | |
378 self.assertEqual(kneeT1, r['ID']) | |
379 | |
380 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
381 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
382 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
383 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
384 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
385 self.assertEqual(None, r) | |
386 | |
387 DropOrthanc(_REMOTE) | |
388 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
389 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 390 |
391 | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
392 def test_multiframe(self): |
7 | 393 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
394 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
395 | |
396 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
397 self.assertEqual("L", im.mode) | |
398 self.assertEqual(512, im.size[0]) | |
399 self.assertEqual(512, im.size[1]) | |
400 | |
401 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
402 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
403 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
404 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
405 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
406 | |
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
407 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
408 def test_changes(self): |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
409 # Check emptiness |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
410 c = DoGet(_REMOTE, '/changes') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
411 self.assertEqual(0, len(c['Changes'])) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
412 self.assertEqual(0, c['Last']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
413 self.assertTrue(c['Done']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
414 c = DoGet(_REMOTE, '/changes?last') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
415 self.assertEqual(0, len(c['Changes'])) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
416 self.assertEqual(0, c['Last']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
417 self.assertTrue(c['Done']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
418 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
419 # Add 1 instance |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
420 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
421 c = DoGet(_REMOTE, '/changes') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
422 begin = c['Last'] |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
423 self.assertEqual(4, len(c['Changes'])) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
424 self.assertTrue(c['Done']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
425 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
426 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
427 c = DoGet(_REMOTE, '/changes?last') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
428 self.assertEqual(1, len(c['Changes'])) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
429 self.assertEqual(begin, c['Last']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
430 self.assertTrue(c['Done']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
431 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
432 self.assertEqual(1, len(c['Changes'])) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
433 self.assertEqual(begin, c['Last']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
434 self.assertTrue(c['Done']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
435 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
436 self.assertEqual(1, len(c['Changes'])) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
437 self.assertEqual(begin - 1, c['Last']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
438 self.assertFalse(c['Done']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
439 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
440 self.assertEqual(1, len(c['Changes'])) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
441 self.assertEqual(begin - 2, c['Last']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
442 self.assertFalse(c['Done']) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
443 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
444 UploadFolder(_REMOTE, 'Knee/T1') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
445 UploadFolder(_REMOTE, 'Knee/T2') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
446 since = begin |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
447 countPatients = 0 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
448 countStudies = 0 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
449 countSeries = 0 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
450 countInstances = 0 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
451 completed = 0 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
452 while True: |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
453 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
454 since = c['Last'] |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
455 for i in c['Changes']: |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
456 if i['ResourceType'] == 'Instance': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
457 countInstances += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
458 if i['ResourceType'] == 'Patient': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
459 countPatients += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
460 if i['ResourceType'] == 'Study': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
461 countStudies += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
462 if i['ResourceType'] == 'Series': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
463 countSeries += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
464 if i['ChangeType'] == 'NewInstance': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
465 countInstances += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
466 if i['ChangeType'] == 'NewPatient': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
467 countPatients += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
468 if i['ChangeType'] == 'NewStudy': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
469 countStudies += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
470 if i['ChangeType'] == 'NewSeries': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
471 countSeries += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
472 if i['ChangeType'] == 'CompletedSeries': |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
473 completed += 1 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
474 self.assertTrue('ID' in i) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
475 self.assertTrue('Path' in i) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
476 self.assertTrue('Seq' in i) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
477 if c['Done']: |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
478 break |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
479 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
480 self.assertEqual(2 * 50, countInstances) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
481 self.assertEqual(2 * 1, countPatients) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
482 self.assertEqual(2 * 1, countStudies) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
483 self.assertEqual(2 * 2, countSeries) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
484 self.assertEqual(0, completed) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
485 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
486 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
487 def test_archive(self): |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
488 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
489 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 490 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
491 | |
492 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
493 self.assertEqual(2, len(z.namelist())) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
494 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
495 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
496 self.assertEqual(2, len(z.namelist())) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
497 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
498 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
499 self.assertEqual(1, len(z.namelist())) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
500 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
501 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 502 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
503 | |
504 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
505 self.assertEqual(2, len(z.namelist())) |
192 | 506 |
507 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
508 'Resources' : [ brainix, knee ] | |
509 }) | |
510 self.assertEqual(3, len(z.namelist())) | |
511 | |
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
512 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
513 def test_media_archive(self): |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
514 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
515 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
516 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
517 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
518 self.assertEqual(3, len(z.namelist())) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
519 self.assertTrue('IMAGES/IM0' in z.namelist()) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
520 self.assertTrue('IMAGES/IM1' in z.namelist()) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
521 self.assertTrue('DICOMDIR' in z.namelist()) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
522 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
523 try: |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
524 os.remove('/tmp/DICOMDIR') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
525 except: |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
526 # The file does not exist |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
527 pass |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
528 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
529 z.extract('DICOMDIR', '/tmp') |
45 | 530 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
531 stderr = subprocess.STDOUT).split('\n') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
532 self.assertEqual(3, len(a)) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
533 self.assertTrue(a[0].startswith('Warning')) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
534 self.assertEqual('BasicDirectory', a[1]) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
535 self.assertEqual('', a[2]) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
536 |
45 | 537 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
538 stderr = subprocess.STDOUT).split('\n') |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
539 self.assertEqual(1, len(a)) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
540 self.assertEqual('', a[0]) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
541 |
45 | 542 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
8
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
543 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
544 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
545 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
546 os.remove('/tmp/DICOMDIR') |
10 | 547 |
548 | |
549 def test_protection(self): | |
550 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
551 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
552 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
553 a = DoGet(_REMOTE, '/patients')[0] | |
554 b = DoGet(_REMOTE, '/patients')[1] | |
555 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
556 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
557 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
558 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
559 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
560 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
561 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
562 | |
563 | |
12 | 564 def test_raw_tags(self): |
10 | 565 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
566 | |
567 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
568 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
569 | |
570 s = '/instances/%s/content/' % i | |
571 | |
572 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
573 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
574 | |
575 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
576 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
577 | |
578 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
579 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
580 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
581 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
582 | |
583 for i in DoGet(_REMOTE, '/instances'): | |
584 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
585 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
586 | |
587 | |
588 def test_raw_tags_mdn(self): | |
589 # Bug reported by Cyril Paulus | |
590 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
591 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
592 | |
593 | |
594 def test_modify_instance(self): | |
595 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
596 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
597 json.dumps({ | |
598 "Replace" : { | |
599 "PatientName" : "hello", | |
600 #"PatientID" : "world" | |
601 }, | |
602 "Remove" : [ "StationName" ], | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
603 "RemovePrivateTags" : True |
10 | 604 }), |
605 'application/json') | |
606 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
607 | |
608 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
609 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 610 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 611 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
612 | |
613 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
614 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
615 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
616 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
617 | |
618 | |
619 def test_modify_series(self): | |
620 # Upload 4 images from the same series | |
621 for i in range(4): | |
622 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
623 | |
624 origSeries = DoGet(_REMOTE, '/series')[0] | |
625 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
626 '{"Replace":{"PatientName":"Jodogne"}}', | |
627 'application/json')['ID'] | |
628 | |
629 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
630 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
631 self.assertEqual(4, len(instances)) | |
632 for i in instances: | |
633 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
634 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
635 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
636 | |
637 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
638 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
639 | |
640 | |
641 def test_modify_study(self): | |
642 # Upload 4 images from the 2 series of the same study | |
643 for i in range(4): | |
644 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
645 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
646 | |
647 origStudy = DoGet(_REMOTE, '/studies')[0] | |
648 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
649 '{"Replace":{"PatientName":"Jodogne"}}', | |
650 'application/json')['ID'] | |
651 | |
652 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
653 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
654 self.assertEqual(2, len(series)) | |
655 for s in series: | |
656 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
657 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
658 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
659 | |
660 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
661 for i in instances: | |
662 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
663 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
664 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
665 | |
666 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
667 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
668 | |
669 | |
670 def test_anonymize_series(self): | |
671 # Upload 4 images from the same series | |
672 for i in range(4): | |
673 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
674 | |
675 origSeries = DoGet(_REMOTE, '/series')[0] | |
676 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
677 '{}', | |
678 'application/json')['ID'] | |
679 | |
680 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
681 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
682 self.assertEqual(4, len(instances)) | |
683 for i in instances: | |
684 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
685 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
686 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
687 | |
688 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
689 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
690 | |
691 | |
692 def test_anonymize_study(self): | |
693 # Upload 4 images from the 2 series of the same study | |
694 for i in range(4): | |
695 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
696 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
697 | |
698 origStudy = DoGet(_REMOTE, '/studies')[0] | |
699 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
700 '{"Replace":{"PatientName":"Jodogne"}}', | |
701 'application/json')['ID'] | |
702 | |
703 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
704 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
705 self.assertEqual(2, len(series)) | |
706 for s in series: | |
707 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
708 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
709 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
710 | |
711 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
712 for i in instances: | |
713 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
714 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
715 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
716 | |
717 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
718 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 719 |
720 | |
721 | |
722 def test_storescu(self): | |
723 # Check emptiness | |
724 e = DoGet(_REMOTE, '/exports') | |
725 self.assertEqual(0, len(e['Exports'])) | |
726 self.assertEqual(0, e['Last']) | |
727 self.assertTrue(e['Done']) | |
728 e = DoGet(_REMOTE, '/exports?last') | |
729 self.assertEqual(0, len(e['Exports'])) | |
730 self.assertEqual(0, e['Last']) | |
731 self.assertTrue(e['Done']) | |
732 | |
733 # Add 1 instance | |
734 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
735 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
736 | |
737 # Export the instance | |
738 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
739 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
740 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
741 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
742 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
743 | |
744 e = DoGet(_REMOTE, '/exports') | |
745 self.assertEqual(1, len(e['Exports'])) | |
746 self.assertTrue(e['Done']) | |
747 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
748 e = DoGet(_REMOTE, '/exports?limit=1') | |
749 self.assertEqual(1, len(e['Exports'])) | |
750 self.assertTrue(e['Done']) | |
751 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
752 e = DoGet(_REMOTE, '/exports?last') | |
753 self.assertEqual(1, len(e['Exports'])) | |
754 self.assertTrue(e['Done']) | |
755 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
756 seqInstance = e['Last'] | |
757 | |
758 # Export the series | |
759 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
760 | |
761 e = DoGet(_REMOTE, '/exports') | |
762 self.assertEqual(2, len(e['Exports'])) | |
763 self.assertTrue(e['Done']) | |
764 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
765 seqSeries = e['Last'] | |
766 self.assertNotEqual(seqInstance, seqSeries) | |
767 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
768 self.assertEqual(1, len(e['Exports'])) | |
769 self.assertFalse(e['Done']) | |
770 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
771 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
772 self.assertEqual(1, len(e['Exports'])) | |
773 self.assertTrue(e['Done']) | |
774 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
775 e = DoGet(_REMOTE, '/exports?last') | |
776 self.assertEqual(1, len(e['Exports'])) | |
777 self.assertTrue(e['Done']) | |
778 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
779 | |
780 # Export the study | |
781 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
782 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
783 | |
784 # Export the patient | |
785 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
786 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
787 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
788 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
789 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
790 | |
791 e = DoGet(_REMOTE, '/exports') | |
792 self.assertEqual(4, len(e['Exports'])) | |
793 self.assertTrue(e['Done']) | |
794 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
795 seqPatient = e['Last'] | |
796 self.assertNotEqual(seqInstance, seqSeries) | |
797 self.assertNotEqual(seqSeries, seqStudy) | |
798 self.assertNotEqual(seqStudy, seqPatient) | |
799 self.assertTrue(seqInstance < seqSeries) | |
800 self.assertTrue(seqSeries < seqStudy) | |
801 self.assertTrue(seqStudy < seqPatient) | |
802 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
803 self.assertEqual(1, len(e['Exports'])) | |
804 self.assertFalse(e['Done']) | |
805 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
806 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
807 self.assertEqual(1, len(e['Exports'])) | |
808 self.assertFalse(e['Done']) | |
809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
810 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
811 self.assertEqual(1, len(e['Exports'])) | |
812 self.assertFalse(e['Done']) | |
813 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
814 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
815 self.assertEqual(1, len(e['Exports'])) | |
816 self.assertTrue(e['Done']) | |
817 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
818 e = DoGet(_REMOTE, '/exports?last') | |
819 self.assertEqual(1, len(e['Exports'])) | |
820 self.assertTrue(e['Done']) | |
821 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
822 | |
823 | |
824 # Check the content of the logged information | |
825 e = DoGet(_REMOTE, '/exports')['Exports'] | |
826 | |
827 if 'PatientID' in e[0]: | |
828 # Since Orthanc 0.8.6 | |
829 patient = 'PatientID' | |
830 study = 'StudyInstanceUID' | |
831 series = 'SeriesInstanceUID' | |
832 instance = 'SOPInstanceUID' | |
833 else: | |
834 # Up to Orthanc 0.8.5 | |
835 patient = 'PatientId' | |
836 study = 'StudyInstanceUid' | |
837 series = 'SeriesInstanceUid' | |
838 instance = 'SopInstanceUid' | |
839 | |
840 for k in range(4): | |
841 self.assertTrue('Date' in e[k]) | |
842 self.assertTrue('Seq' in e[k]) | |
843 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
844 | |
845 self.assertEqual(10, len(e[0])) | |
846 self.assertEqual('Instance', e[0]['ResourceType']) | |
847 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
848 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
849 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
850 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
851 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
852 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
853 | |
854 self.assertEqual(9, len(e[1])) | |
855 self.assertEqual('Series', e[1]['ResourceType']) | |
856 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
857 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
858 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
859 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
860 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
861 | |
862 self.assertEqual(8, len(e[2])) | |
863 self.assertEqual('Study', e[2]['ResourceType']) | |
864 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
865 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
866 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
867 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
868 | |
869 self.assertEqual(7, len(e[3])) | |
870 self.assertEqual('Patient', e[3]['ResourceType']) | |
871 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
872 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
873 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
874 | |
875 DropOrthanc(_REMOTE) | |
876 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
877 | |
878 | |
879 def test_store_peer(self): | |
880 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
881 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
882 | |
883 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
884 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
885 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
886 | |
887 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
888 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
889 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
890 | |
891 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
892 | |
893 DropOrthanc(_REMOTE) | |
894 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
895 | |
896 | |
897 def test_bulk_storescu(self): | |
898 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
899 | |
900 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
901 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
902 | |
903 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
904 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
905 | |
906 DropOrthanc(_LOCAL) | |
907 | |
908 # Send using patient's UUID | |
909 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
910 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
911 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
912 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
913 | |
914 | |
915 def test_color(self): | |
916 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
917 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
918 self.assertEqual("RGB", im.mode) | |
919 self.assertEqual(41, im.size[0]) | |
920 self.assertEqual(41, im.size[1]) | |
921 | |
922 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 923 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 924 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
925 | |
926 | |
12 | 927 def test_faking_ruby_put(self): |
928 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
929 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
930 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
931 a = DoGet(_REMOTE, '/patients')[0] | |
932 b = DoGet(_REMOTE, '/patients')[1] | |
933 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
934 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
935 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
936 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
937 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
938 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
939 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
940 | |
941 | |
942 def test_faking_ruby_delete(self): | |
943 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
944 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
945 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
946 a = DoGet(_REMOTE, '/patients')[0] | |
947 b = DoGet(_REMOTE, '/patients')[1] | |
948 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
949 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
950 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
951 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
952 | |
953 | |
954 def test_faking_google_put(self): | |
955 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
956 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
957 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
958 a = DoGet(_REMOTE, '/patients')[0] | |
959 b = DoGet(_REMOTE, '/patients')[1] | |
960 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
961 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
962 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
963 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
964 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
965 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
967 | |
968 | |
969 def test_faking_google_delete(self): | |
970 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
971 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
972 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
973 a = DoGet(_REMOTE, '/patients')[0] | |
974 b = DoGet(_REMOTE, '/patients')[1] | |
975 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
976 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
977 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
978 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
979 | |
980 | |
981 def test_lua(self): | |
982 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
983 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
984 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
985 | |
986 | |
987 def test_metadata(self): | |
988 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
989 p = DoGet(_REMOTE, '/patients')[0] | |
990 i = DoGet(_REMOTE, '/instances')[0] | |
991 | |
992 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
993 self.assertEqual(1, len(m)) | |
994 self.assertEqual('LastUpdate', m[0]) | |
995 | |
996 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
145 | 997 self.assertEqual(8, len(m)) |
12 | 998 self.assertTrue('IndexInSeries' in m) |
999 self.assertTrue('ReceptionDate' in m) | |
1000 self.assertTrue('RemoteAET' in m) | |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1001 self.assertTrue('Origin' in m) |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
1002 self.assertTrue('TransferSyntax' in m) |
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
1003 self.assertTrue('SopClassUid' in m) |
145 | 1004 self.assertTrue('RemoteIP' in m) |
1005 self.assertTrue('HttpUsername' in m) | |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1006 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1007 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1008 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
1009 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
1010 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1011 |
1012 # Play with custom metadata | |
1013 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
1014 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1015 self.assertEqual(2, len(m)) | |
1016 self.assertTrue('LastUpdate' in m) | |
1017 self.assertTrue('5555' in m) | |
1018 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1019 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
1020 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1021 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
1022 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1023 self.assertEqual(1, len(m)) | |
1024 self.assertTrue('LastUpdate' in m) | |
13 | 1025 |
1026 | |
1027 def test_statistics(self): | |
1028 # Upload 16 instances | |
1029 for i in range(4): | |
1030 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1031 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1032 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1033 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1034 | |
1035 s = DoGet(_REMOTE, '/statistics') | |
1036 self.assertEqual(16, s['CountInstances']) | |
1037 self.assertEqual(2, s['CountPatients']) | |
1038 self.assertEqual(2, s['CountStudies']) | |
1039 self.assertEqual(4, s['CountSeries']) | |
1040 d = int(s['TotalUncompressedSize']) | |
1041 | |
1042 e = 0 | |
1043 for patient in DoGet(_REMOTE, '/patients'): | |
1044 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1045 self.assertEqual(8, s['CountInstances']) | |
1046 self.assertEqual(1, s['CountStudies']) | |
1047 self.assertEqual(2, s['CountSeries']) | |
1048 e += int(s['UncompressedSize']) | |
1049 | |
1050 for study in DoGet(_REMOTE, '/studies'): | |
1051 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1052 self.assertEqual(8, s['CountInstances']) | |
1053 self.assertEqual(2, s['CountSeries']) | |
1054 e += int(s['UncompressedSize']) | |
1055 | |
1056 for series in DoGet(_REMOTE, '/series'): | |
1057 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1058 self.assertEqual(4, s['CountInstances']) | |
1059 e += int(s['UncompressedSize']) | |
1060 | |
1061 self.assertEqual(3 * d, e) | |
1062 | |
1063 | |
1064 def test_custom_attachment(self): | |
1065 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1066 patient = DoGet(_REMOTE, '/patients')[0] | |
1067 instance = DoGet(_REMOTE, '/instances')[0] | |
1068 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1069 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1070 | |
1071 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1072 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1073 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1074 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1075 | |
1076 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1077 hello = 'hellohellohellohellohellohellohellohellohello' | |
1078 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1079 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1080 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1081 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1082 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1083 | |
1084 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1085 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1086 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1087 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1088 size + | |
1089 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1090 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1091 | |
1092 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1093 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1094 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1095 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1096 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1097 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1098 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1099 | |
1100 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1101 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1102 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1103 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1104 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1105 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1106 | |
1107 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1108 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1109 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1110 | |
1111 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1112 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1113 | |
1114 | |
1115 def test_incoming_storescu(self): | |
1116 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1117 subprocess.check_call([ FindExecutable('storescu'), |
44
ffa542cce638
Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
43
diff
changeset
|
1118 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1119 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1120 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1121 | |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1122 i = DoGet(_REMOTE, '/instances') |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1123 self.assertEqual(1, len(i)) |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1124 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
145 | 1125 self.assertEqual(8, len(m)) |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1126 self.assertTrue('IndexInSeries' in m) |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1127 self.assertTrue('ReceptionDate' in m) |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1128 self.assertTrue('RemoteAET' in m) |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1129 self.assertTrue('Origin' in m) |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
1130 self.assertTrue('TransferSyntax' in m) |
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
1131 self.assertTrue('SopClassUid' in m) |
145 | 1132 self.assertTrue('RemoteIP' in m) |
1133 self.assertTrue('CalledAET' in m) | |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1134 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1135 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1136 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
1137 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
95
a807a4699eb4
testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
92
diff
changeset
|
1138 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
63
2652d562267a
test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
62
diff
changeset
|
1139 |
13 | 1140 |
1141 def test_incoming_findscu(self): | |
1142 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1143 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1144 | |
1145 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1146 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1147 self.assertEqual(2, len(patientNames)) | |
1148 self.assertTrue('Test Patient BG ' in patientNames) | |
1149 self.assertTrue('Anonymized' in patientNames) | |
1150 | |
1151 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1152 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1153 self.assertEqual(2, len(series)) | |
1154 self.assertTrue('20070208' in series) | |
1155 self.assertTrue('19980312' in series) | |
1156 | |
56
1059b8de42de
ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
55
diff
changeset
|
1157 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
1059b8de42de
ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
55
diff
changeset
|
1158 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
1059b8de42de
ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
55
diff
changeset
|
1159 self.assertEqual(1, len(series)) |
1059b8de42de
ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
55
diff
changeset
|
1160 self.assertTrue('19980312' in series) |
1059b8de42de
ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
55
diff
changeset
|
1161 |
13 | 1162 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1163 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1164 self.assertEqual(1, len(series)) | |
1165 | |
1166 # Test the "CaseSentitivePN" flag (false by default) | |
1167 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1168 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1169 self.assertEqual(1, len(series)) | |
66
821d9eb73c45
Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
1170 |
70 | 1171 # Test range search (buggy if Orthanc <= 0.9.6) |
1172 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1173 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1174 self.assertEqual(2, len(studies)) | |
1175 self.assertTrue('20070208' in studies) | |
1176 self.assertTrue('19980312' in studies) | |
1177 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1178 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1179 self.assertEqual(1, len(studies)) | |
1180 self.assertTrue('19980312' in studies) | |
1181 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1182 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1183 self.assertEqual(1, len(studies)) | |
1184 self.assertTrue('19980312' in studies) | |
13 | 1185 |
1186 | |
191
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1187 def test_incoming_findscu_2(self): |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1188 # This test fails if "LookupMode_DatabaseOnly" is used |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1189 # (sequences are not available in this mode, and only main |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1190 # DICOM tags are returned) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1191 UploadInstance(_REMOTE, 'Multiframe.dcm') |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1192 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1193 |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1194 # Test returning sequence values (only since Orthanc 0.9.5) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1195 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1196 sequences = re.findall('\(0008,2112\)', i) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1197 self.assertEqual(1, len(sequences)) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1198 |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1199 # Test returning a non-main DICOM tag, |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1200 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1201 # "MEDPC" in "ColorTestImageJ.dcm" |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1202 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1203 tags = re.findall('\(0018,1010\).*MEDPC', i) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1204 self.assertEqual(1, len(tags)) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1205 |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1206 |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1207 def test_incoming_findscu_3(self): |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1208 # This test fails if "LookupMode_DatabaseOnly" or |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1209 # "LookupMode_DiskOnAnswer" is used, as |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1210 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1211 # tag, as thus a constraint cannot be applied to it |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1212 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1213 |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1214 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1215 sequences = re.findall('\(0018,1010\)', i) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1216 self.assertEqual(1, len(sequences)) |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1217 |
bc8bc83465dc
testing C-FIND optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
189
diff
changeset
|
1218 |
13 | 1219 def test_incoming_movescu(self): |
1220 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
1221 |
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
1222 # No matching patient, so no job is created |
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
1223 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
1224 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1225 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
1226 |
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
1227 # 1 Matching patient, track the job |
138 | 1228 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1229 '--patient', | |
1230 '-k', '0008,0052=PATIENT', | |
1231 '-k', 'PatientID=12345678' | |
1232 ]))) | |
13 | 1233 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1234 | |
1235 | |
1236 def test_findscu(self): | |
1237 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1238 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1239 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1240 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1241 | |
1242 # Test the "find-patient" level | |
1243 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1244 self.assertEqual(1, len(p)) | |
1245 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1246 | |
1247 # Test wildcards constraints. The "LO" value representation | |
1248 # for PatientID is always case-sensitive, but the "PN" for | |
1249 # PatientName might depend on the implementation: | |
1250 # "GenerateConfigurationForTests.py" will force it to be case | |
1251 # insensitive (which was the default until Orthanc 0.8.6). | |
1252 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1253 self.assertEqual(1, len(p)) | |
1254 | |
1255 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1256 self.assertEqual(1, len(p)) | |
1257 | |
1258 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1259 self.assertEqual(1, len(p)) | |
1260 | |
1261 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1262 self.assertEqual(1, len(p)) | |
1263 | |
1264 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1265 self.assertEqual(0, len(p)) | |
1266 | |
1267 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1268 self.assertEqual(0, len(p)) | |
1269 | |
1270 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1271 self.assertEqual(0, len(p)) | |
1272 | |
1273 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1274 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1275 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1276 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1277 | |
1278 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1279 self.assertEqual(2, len(p)) | |
1280 | |
1281 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1282 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1283 self.assertEqual(1, len(s)) | |
1284 self.assertEqual('20070208', s[0]['StudyDate']) | |
1285 | |
1286 # Test range searches | |
1287 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1288 'StudyDate' : '-20070101' }) | |
1289 self.assertEqual(0, len(t)) | |
1290 | |
1291 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1292 'StudyDate' : '20090101-' }) | |
1293 self.assertEqual(0, len(t)) | |
1294 | |
1295 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1296 'StudyDate' : '20070101-' }) | |
1297 self.assertEqual(1, len(t)) | |
1298 | |
1299 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1300 'StudyDate' : '-20090101' }) | |
1301 self.assertEqual(1, len(t)) | |
1302 | |
1303 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1304 'StudyDate' : '20070207-20070207' }) | |
1305 self.assertEqual(0, len(t)) | |
1306 | |
1307 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1308 'StudyDate' : '20070208-20070208' }) | |
1309 self.assertEqual(1, len(t)) | |
1310 | |
1311 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1312 'StudyDate' : '20070209-20070209' }) | |
1313 self.assertEqual(0, len(t)) | |
1314 | |
1315 # Test the ModalitiesInStudy tag | |
1316 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1317 'PatientID' : 'B9uTHKOZ', | |
1318 'ModalitiesInStudy' : 'US' }) | |
1319 self.assertEqual(0, len(t)) | |
1320 | |
1321 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1322 'PatientID' : 'B9uTHKOZ', | |
1323 'ModalitiesInStudy' : 'CT' }) | |
1324 self.assertEqual(1, len(t)) | |
1325 | |
1326 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1327 'PatientID' : 'B9uTHKOZ', | |
1328 'ModalitiesInStudy' : 'US\\CT' }) | |
1329 self.assertEqual(1, len(t)) | |
1330 | |
1331 # Test the "find-series" level | |
1332 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1333 'PatientID' : 'B9uTHKOZ', | |
1334 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1335 self.assertEqual(1, len(t)) | |
1336 | |
1337 # Test "\" separator | |
1338 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1339 'PatientID' : 'B9uTHKOZ', | |
1340 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1341 'Modality' : 'MR\\CT\\US' }) | |
1342 self.assertEqual(1, len(t)) | |
1343 | |
1344 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1345 'PatientID' : 'B9uTHKOZ', | |
1346 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1347 'Modality' : 'MR\\US' }) | |
1348 self.assertEqual(0, len(t)) | |
1349 | |
1350 | |
1351 def test_update_modalities(self): | |
1352 try: | |
1353 DoDelete(_REMOTE, '/modalities/toto') | |
1354 except: | |
1355 pass | |
1356 try: | |
1357 DoDelete(_REMOTE, '/modalities/tata') | |
1358 except: | |
1359 pass | |
1360 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1361 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
116 | 1362 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1363 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1364 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
121
1a19f953f53c
also test GenericNoWildcardInDates
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
120
diff
changeset
|
1365 DoDelete(_REMOTE, '/modalities/tata') |
1a19f953f53c
also test GenericNoWildcardInDates
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
120
diff
changeset
|
1366 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1367 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
182
7a6b532853ab
modalities are now described as JSON objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
181
diff
changeset
|
1368 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
7a6b532853ab
modalities are now described as JSON objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
181
diff
changeset
|
1369 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
7a6b532853ab
modalities are now described as JSON objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
181
diff
changeset
|
1370 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
7a6b532853ab
modalities are now described as JSON objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
181
diff
changeset
|
1371 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1372 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1373 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1374 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1375 DoDelete(_REMOTE, '/modalities/toto') | |
1376 DoDelete(_REMOTE, '/modalities/tata') | |
1377 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1378 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1379 | |
1380 | |
1381 def test_update_peers(self): | |
1382 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1383 try: | |
1384 DoDelete(_REMOTE, '/peers/toto') | |
1385 except: | |
1386 pass | |
1387 try: | |
1388 DoDelete(_REMOTE, '/peers/tata') | |
1389 except: | |
1390 pass | |
1391 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1392 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1393 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
128 | 1394 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1395 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1396 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1397 self.assertEqual('user', peersReadback['tata']['Username']) | |
1398 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1399 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1400 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1401 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
1402 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
13 | 1403 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1404 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1405 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1406 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1407 DoDelete(_REMOTE, '/peers/toto') | |
1408 DoDelete(_REMOTE, '/peers/tata') | |
1409 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1410 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1411 | |
1412 | |
1413 def test_mesterhazy_modification(self): | |
1414 # When I modify a series ( eg. curl | |
1415 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1416 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1417 # series is added to a new Study, instead of the existing | |
1418 # Study. Fixed in Orthanc 0.7.5 | |
1419 | |
1420 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1421 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1422 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1423 | |
1424 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1425 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1426 | |
1427 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1428 | |
1429 | |
1430 def test_create(self): | |
1431 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1432 json.dumps({ | |
1433 'PatientName' : 'Jodogne', | |
1434 'Modality' : 'CT', | |
58 | 1435 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1436 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1437 })) | |
1438 | |
1439 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1440 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1441 | |
1442 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1443 self.assertEqual((5, 5), png.size) | |
1444 | |
38 | 1445 j = DoGet(_REMOTE, i['Path']) |
1446 self.assertEqual('Instance', j['Type']) | |
1447 self.assertEqual(j['ID'], i['ID']) | |
1448 | |
13 | 1449 |
1450 def test_pilates(self): | |
1451 # "SCU failed error when accessing orthanc with osirix" by | |
1452 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1453 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1454 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1455 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1456 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1457 | |
1458 | |
1459 def test_shared_tags(self): | |
1460 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1461 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1462 p = DoGet(_REMOTE, '/patients')[0] | |
1463 | |
1464 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1465 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
136
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1466 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1467 |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1468 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1469 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1470 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1471 |
13 | 1472 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1473 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1474 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1475 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1476 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1477 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1478 | |
1479 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1480 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1481 | |
1482 | |
1483 def test_modules(self): | |
1484 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1485 p = DoGet(_REMOTE, '/patients')[0] | |
1486 s = DoGet(_REMOTE, '/studies')[0] | |
1487 t = DoGet(_REMOTE, '/series')[0] | |
1488 | |
1489 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1490 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1491 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1492 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1493 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1494 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1495 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1496 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1497 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1498 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1499 | |
1500 | |
1501 def test_auto_directory(self): | |
1502 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1503 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1504 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
1505 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1506 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1507 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1508 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1509 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1510 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1511 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1512 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1513 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1514 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1515 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1516 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1517 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1518 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1519 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1520 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1521 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1522 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1523 |
1524 | |
1525 def test_echo(self): | |
1526 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1527 | |
1528 | |
1529 def test_xml(self): | |
1530 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1531 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1532 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1533 self.assertEqual(len(items), len(json)) | |
1534 | |
1535 self.assertTrue('dicom-conformance' in json) | |
1536 | |
1537 ok = False | |
1538 for i in items: | |
1539 if i.childNodes[0].data == 'dicom-conformance': | |
1540 ok = True | |
1541 self.assertTrue(ok) | |
1542 | |
1543 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1544 def test_googlecode_issue_16(self): |
13 | 1545 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1546 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1547 self.assertEqual('0018,1063', t) | |
1548 | |
1549 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1550 def test_googlecode_issue_22(self): |
13 | 1551 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1552 a = [ | |
1553 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1554 "c69eee9a51eea3e8611e82e578897254", | |
1555 "315666be83e2d0111c77bc0996d84901", | |
1556 "3e27aa959d911172c48a1436443c72b1", | |
1557 "958642c9e7e9d232d3869faff546058c", | |
1558 "5e7ea8e3e4230cae707d143481355c59", | |
1559 "eda37f83558d858a596175aed8b2ad47", | |
1560 "486713bd2895c4ecbe0e97715ac7f80a", | |
1561 "091ef729eb169e67da8a0faa9631f9a8", | |
1562 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1563 "e2f39e85896fe58876654b94cd0b5013", | |
1564 "6fd2129e4950abbe1be053bc814d5da8", | |
1565 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1566 "746f808582156734dd6b6fdfd3a0b72c", | |
1567 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1568 "806b8b3e300c615099c11a5ec23465aa", | |
1569 "7c836aa298ba6eef96434579af631a11", | |
1570 "a0357dc9f4f72d73a885c33d7c287446", | |
1571 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1572 "8b114c526b8cbed6cad8a3248b7b480c", | |
1573 "44e6670f127e612a2b4aa60a0d207698", | |
1574 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1575 "95c796c2fa8f59018b15cf2987b1f79b", | |
1576 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1577 ] | |
1578 | |
1579 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1580 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1581 | |
1582 for i in range(len(a)): | |
1583 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1584 | |
1585 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1586 def test_googlecode_issue_19(self): |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1587 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1588 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1589 | |
1590 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1591 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1592 |
1593 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1594 def test_googlecode_issue_37(self): |
13 | 1595 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1596 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1597 | |
1598 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1599 'CaseSensitive' : True, | |
1600 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1601 self.assertEqual(1, len(a)) | |
14 | 1602 |
1603 | |
1604 def test_rest_find(self): | |
1605 # Upload 8 instances | |
1606 for i in range(2): | |
1607 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1608 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1609 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1610 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1611 | |
1612 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1613 'CaseSensitive' : False, | |
1614 'Query' : { 'PatientName' : '*n*' }}) | |
1615 self.assertEqual(2, len(a)) | |
1616 | |
1617 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1618 'CaseSensitive' : True, | |
1619 'Query' : { 'PatientName' : '*n*' }}) | |
1620 self.assertEqual(0, len(a)) | |
1621 | |
1622 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1623 'Level' : 'Patient', | |
1624 'CaseSensitive' : False, | |
1625 'Query' : { 'PatientName' : '*ne*' }}) | |
1626 self.assertEqual(1, len(a)) | |
1627 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1628 | |
1629 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1630 'CaseSensitive' : True, | |
1631 'Query' : { 'PatientName' : '*ne*' }}) | |
1632 self.assertEqual(0, len(a)) | |
1633 | |
1634 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1635 'CaseSensitive' : True, | |
1636 'Query' : { 'PatientName' : '*NE*' }}) | |
1637 self.assertEqual(1, len(a)) | |
1638 | |
1639 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1640 'CaseSensitive' : True, | |
1641 'Query' : { 'PatientName' : '*NE*' }}) | |
1642 self.assertEqual(2, len(a)) | |
1643 | |
1644 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1645 'CaseSensitive' : True, | |
1646 'Query' : { 'PatientName' : '*NE*' }}) | |
1647 self.assertEqual(4, len(a)) | |
1648 | |
1649 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1650 self.assertEqual(2, len(a)) | |
1651 | |
1652 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1653 self.assertEqual(2, len(a)) | |
1654 | |
1655 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1656 self.assertEqual(4, len(a)) | |
1657 | |
1658 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1659 self.assertEqual(8, len(a)) | |
1660 | |
1661 | |
1662 def test_rest_query_retrieve(self): | |
1663 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1664 | |
1665 # Upload 8 instances | |
1666 for i in range(2): | |
1667 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1668 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1669 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1670 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1671 | |
1672 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1673 for p in DoGet(_REMOTE, '/patients'): | |
1674 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1675 DoDelete(_REMOTE, '/patients/%s' % p) | |
1676 | |
1677 for q in DoGet(_REMOTE, '/queries'): | |
1678 DoDelete(_REMOTE, '/queries/%s' % q) | |
1679 | |
1680 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1681 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1682 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1683 'Query' : { |
1684 'PatientName' : '*NE*', | |
1685 'StudyDate' : '*', | |
1686 }})['ID'] | |
14 | 1687 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1688 | |
1689 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1690 self.assertTrue('answers' in b) | |
1691 self.assertTrue('level' in b) | |
1692 self.assertTrue('modality' in b) | |
1693 self.assertTrue('query' in b) | |
1694 self.assertTrue('retrieve' in b) | |
1695 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1696 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1697 | |
1698 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1699 self.assertEqual(2, len(q)) |
14 | 1700 self.assertTrue('PatientName' in q) |
27 | 1701 self.assertTrue('StudyDate' in q) |
14 | 1702 self.assertEqual('*NE*', q['PatientName']) |
27 | 1703 self.assertEqual('*', q['StudyDate']) |
14 | 1704 |
1705 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1706 | |
1707 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1708 self.assertTrue('content' in s) | |
1709 self.assertTrue('retrieve' in s) | |
1710 | |
1711 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1712 self.assertEqual('887', s['PatientID']) | |
1713 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1714 | |
1715 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1716 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1717 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1718 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1719 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1720 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1721 | |
112 | 1722 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1723 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1724 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1725 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1726 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1727 | |
186
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1728 # New in Orthanc 1.4.3 |
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1729 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1730 self.assertEqual(2, len(s)) |
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1731 for i in range(2): |
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1732 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1733 self.assertEqual('887', s[i]['PatientID']) |
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1734 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
8feebc2bf9fc
test options expand and limit to /queries/.../answers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
183
diff
changeset
|
1735 |
14 | 1736 DoDelete(_REMOTE, '/queries/%s' % a) |
1737 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1738 | |
1739 | |
1740 def test_parent(self): | |
1741 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1742 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1743 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1744 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1745 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
1746 self.assertEqual(instance, u) |
14 | 1747 |
1748 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1749 self.assertEqual('Patient', a['Type']) | |
1750 self.assertEqual(patient, a['ID']) | |
1751 | |
1752 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1753 self.assertEqual('Patient', a['Type']) | |
1754 self.assertEqual(patient, a['ID']) | |
1755 | |
1756 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1757 self.assertEqual('Study', a['Type']) | |
1758 self.assertEqual(study, a['ID']) | |
1759 | |
1760 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1761 self.assertEqual('Patient', a['Type']) | |
1762 self.assertEqual(patient, a['ID']) | |
1763 | |
1764 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1765 self.assertEqual('Study', a['Type']) | |
1766 self.assertEqual(study, a['ID']) | |
1767 | |
1768 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1769 self.assertEqual('Series', a['Type']) | |
1770 self.assertEqual(series, a['ID']) | |
1771 | |
1772 | |
1773 def test_shanon(self): | |
1774 def Anonymize(instance, replacements = {}): | |
119 | 1775 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1776 'Replace' : replacements, | |
1777 'Force' : True, | |
1778 }, 'application/json') | |
14 | 1779 |
1780 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1781 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1782 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1783 | |
1784 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1785 ids = [ 'ozp00SjY2xG', | |
1786 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1787 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1788 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1789 | |
1790 a = ExtractDicomTags(Anonymize(u), tags) | |
1791 for i in range(4): | |
1792 self.assertNotEqual(ids[i], a[i]) | |
1793 self.assertTrue(a[4].startswith('Orthanc')) | |
1794 | |
1795 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1796 for i in range(4): | |
1797 self.assertNotEqual(ids[i], a[i]) | |
1798 self.assertFalse(a[4].startswith('Orthanc')) | |
1799 | |
1800 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1801 self.assertEqual('instance', a[3]) | |
1802 self.assertFalse(a[4].startswith('Orthanc')) | |
1803 | |
1804 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1805 self.assertEqual('series', a[2]) | |
1806 self.assertFalse(a[4].startswith('Orthanc')) | |
1807 | |
1808 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1809 self.assertEqual('study', a[1]) | |
1810 self.assertFalse(a[4].startswith('Orthanc')) | |
1811 | |
1812 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1813 self.assertEqual('patient', a[0]) | |
1814 self.assertFalse(a[4].startswith('Orthanc')) | |
1815 | |
1816 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1817 'StudyInstanceUID' : 'study', | |
1818 'SeriesInstanceUID' : 'series', | |
1819 'SOPInstanceUID' : 'instance' }), tags) | |
1820 self.assertEqual('patient', a[0]) | |
1821 self.assertFalse(a[4].startswith('Orthanc')) | |
1822 | |
1823 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1824 | |
1825 | |
1826 def test_shanon_2(self): | |
1827 def Modify(instance, replacements = {}): | |
119 | 1828 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1829 'Replace' : replacements, | |
1830 'Force': True, | |
1831 }, 'application/json') | |
14 | 1832 |
1833 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1834 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1835 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1836 | |
1837 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1838 ids = [ 'ozp00SjY2xG', | |
1839 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1840 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1841 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1842 | |
1843 a = ExtractDicomTags(Modify(u), tags) | |
1844 self.assertEqual(ids[0], a[0]) | |
1845 self.assertEqual(ids[1], a[1]) | |
1846 self.assertEqual(ids[2], a[2]) | |
1847 self.assertNotEqual(ids[3], a[3]) | |
1848 self.assertEqual(0, len(a[4])) | |
1849 | |
1850 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1851 self.assertEqual(ids[0], a[0]) | |
1852 self.assertEqual(ids[1], a[1]) | |
1853 self.assertEqual(ids[2], a[2]) | |
1854 self.assertEqual('instance', a[3]) | |
1855 | |
1856 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1857 self.assertEqual(ids[0], a[0]) | |
1858 self.assertEqual(ids[1], a[1]) | |
1859 self.assertEqual('series', a[2]) | |
1860 self.assertNotEqual(ids[3], a[3]) | |
1861 | |
1862 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1863 self.assertEqual(ids[0], a[0]) | |
1864 self.assertEqual('study', a[1]) | |
1865 self.assertNotEqual(ids[2], a[2]) | |
1866 self.assertNotEqual(ids[3], a[3]) | |
1867 | |
1868 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1869 self.assertEqual('patient', a[0]) | |
1870 self.assertNotEqual(ids[1], a[1]) | |
1871 self.assertNotEqual(ids[2], a[2]) | |
1872 self.assertNotEqual(ids[3], a[3]) | |
1873 | |
1874 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1875 'StudyInstanceUID' : 'study', | |
1876 'SeriesInstanceUID' : 'series', | |
1877 'SOPInstanceUID' : 'instance' }), tags) | |
1878 self.assertEqual('patient', a[0]) | |
1879 self.assertEqual('study', a[1]) | |
1880 self.assertEqual('series', a[2]) | |
1881 self.assertEqual('instance', a[3]) | |
1882 | |
1883 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1884 | |
1885 | |
1886 def test_instances_tags(self): | |
1887 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1888 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1889 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1890 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1891 | |
1892 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1893 self.assertEqual(2, len(i)) | |
1894 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1895 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1896 | |
1897 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1898 self.assertEqual(2, len(i)) | |
1899 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1900 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1901 | |
1902 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1903 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1904 self.assertEqual(1, len(i)) | |
1905 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1906 | |
1907 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1908 self.assertEqual(1, len(i)) | |
1909 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1910 | |
136
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1911 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1912 self.assertEqual(1, len(i)) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1913 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
1914 |
14 | 1915 |
1916 def test_lookup(self): | |
1917 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1918 self.assertEqual(0, len(a)) | |
1919 | |
1920 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1921 | |
1922 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1923 self.assertEqual(1, len(a)) | |
1924 self.assertEqual('Patient', a[0]['Type']) | |
1925 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1926 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1927 | |
1928 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1929 self.assertEqual(1, len(a)) | |
1930 self.assertEqual('Study', a[0]['Type']) | |
1931 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1932 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1933 | |
1934 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1935 self.assertEqual(1, len(a)) | |
1936 self.assertEqual('Series', a[0]['Type']) | |
1937 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1938 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1939 | |
1940 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1941 self.assertEqual(1, len(a)) | |
1942 self.assertEqual('Instance', a[0]['Type']) | |
1943 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1944 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1945 | |
1946 DropOrthanc(_REMOTE) | |
1947 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1948 self.assertEqual(0, len(a)) | |
1949 | |
15 | 1950 |
1951 def test_autorouting(self): | |
1952 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
1953 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
1954 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
1955 | |
1956 # Check that this version is >= 0.8.0 | |
1957 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
1958 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1959 | |
1960 UploadInstance(_REMOTE, knee1) | |
1961 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1962 | |
1963 DropOrthanc(_REMOTE) | |
1964 DropOrthanc(_LOCAL) | |
174 | 1965 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 1966 UploadInstance(_REMOTE, knee1) |
1967 UploadInstance(_REMOTE, knee2) | |
1968 UploadInstance(_REMOTE, other) | |
1969 WaitEmpty(_REMOTE) | |
174 | 1970 UninstallLuaCallbacks(_REMOTE) |
15 | 1971 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
1972 | |
1973 DropOrthanc(_REMOTE) | |
1974 DropOrthanc(_LOCAL) | |
174 | 1975 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 1976 UploadInstance(_REMOTE, knee1) |
1977 UploadInstance(_REMOTE, knee2) | |
1978 UploadInstance(_REMOTE, other) | |
1979 WaitEmpty(_REMOTE) | |
174 | 1980 UninstallLuaCallbacks(_REMOTE) |
15 | 1981 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
1982 | |
1983 DropOrthanc(_REMOTE) | |
1984 DropOrthanc(_LOCAL) | |
174 | 1985 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 1986 UploadInstance(_REMOTE, knee1) |
1987 WaitEmpty(_REMOTE) | |
174 | 1988 UninstallLuaCallbacks(_REMOTE) |
15 | 1989 i = DoGet(_LOCAL, '/instances') |
1990 self.assertEqual(1, len(i)) | |
1991 | |
1992 with tempfile.NamedTemporaryFile(delete = True) as f: | |
1993 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
1994 f.flush() | |
45 | 1995 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 1996 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
1997 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
1998 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 1999 |
2000 | |
2001 def test_storescu_rf(self): | |
2002 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2003 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2004 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2005 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2006 |
2007 | |
2008 def test_anonymize_instance(self): | |
2009 def AnonymizeAndUpload(instanceId, parameters): | |
2010 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2011 'application/json'), 'application/dicom')['ID'] | |
2012 | |
2013 def ModifyAndUpload(instanceId, parameters): | |
2014 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2015 'application/json'), 'application/dicom')['ID'] | |
2016 | |
2017 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2018 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2019 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2020 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2021 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2022 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2023 | |
2024 b = AnonymizeAndUpload(a, '{}') | |
2025 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2026 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2027 | |
2028 # Keep private tag (only OK since Orthanc 0.8.0) | |
2029 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2030 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2031 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2032 | |
2033 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2034 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2035 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2036 | |
2037 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2038 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2039 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2040 | |
2041 # Examples from the Wiki | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
2042 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2043 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2044 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2045 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2046 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2047 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2048 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2049 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2050 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2051 | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
2052 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2053 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2054 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2055 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2056 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2057 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2058 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2059 | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
2060 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2061 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2062 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2063 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2064 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2065 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2066 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2067 | |
2068 | |
2069 # Test modify non-existing | |
2070 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2071 json.dumps({ | |
2072 'PatientName' : 'Jodogne', | |
2073 'Modality' : 'CT', | |
2074 }))['ID'] | |
2075 | |
2076 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2077 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2078 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2079 | |
2080 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2081 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2082 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2083 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2084 | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2085 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2086 def test_incoming_jpeg(self): |
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2087 def storescu(image, acceptUnknownSopClassUid): |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2088 if acceptUnknownSopClassUid: |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2089 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2090 else: |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2091 tmp = [ '-xs' ] |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2092 |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2093 with open(os.devnull, 'w') as FNULL: |
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2094 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2095 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2096 GetDatabasePath(image) ], |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2097 stderr = FNULL) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2098 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2099 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2100 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2101 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2102 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2103 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2104 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
62
f9c4ce95756f
removal of useless information
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
61
diff
changeset
|
2105 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
61
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2106 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2107 storescu('UnknownSopClassUid.dcm', True) |
967d44407308
test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
2108 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2109 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2110 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2111 def test_storescu_jpeg(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2112 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2113 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2114 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2115 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2116 | |
2117 # This is JPEG lossless | |
136
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
2118 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2119 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
136
5634ef96fcc5
testing "short" option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
133
diff
changeset
|
2120 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2121 |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2122 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2123 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2124 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2125 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2126 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2127 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2128 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2129 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2130 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2131 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2132 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2133 DropOrthanc(_REMOTE) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2134 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2135 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2136 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2137 def test_pixel_data(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2138 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2139 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2140 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2141 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2142 phenixSize = 358 * 512 * 2 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2143 colorSize = 1000 * 1000 * 3 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2144 jpegSize = 51918 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2145 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2146 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2147 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2148 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2149 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2150 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2151 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2152 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2153 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2154 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2155 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2156 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2157 def test_decode_brainix(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2158 brainix = [ |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2159 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2160 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2161 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2162 ] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2163 h = '6fb11b932d535c2be04beabd99793ff8' |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2164 maxValue = 426.0 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2165 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2166 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2167 for i in brainix: |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2168 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2169 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2170 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2171 truth2 = map(lambda x: min(255, x), truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2172 for i in brainix: |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2173 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2174 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2175 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2176 for i in brainix: |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2177 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2178 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2179 for i in brainix: |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2180 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2181 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2182 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2183 def test_decode_color(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2184 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2185 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2186 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2187 for i in [ imagej, color ]: |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2188 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2189 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2190 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2191 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2192 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2193 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2194 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2195 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2196 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2197 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2198 def test_decode_rf(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2199 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2200 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2201 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2202 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2203 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2204 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2205 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2206 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2207 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2208 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2209 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2210 def test_decode_multiframe(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2211 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2212 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2213 # Test the first frame |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2214 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2215 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2216 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2217 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2218 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2219 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2220 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2221 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2222 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2223 # Test the last frame |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2224 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2225 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2226 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2227 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2228 def test_decode_signed(self): |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2229 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2230 minValue = -2000 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2231 maxValue = 4042 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2232 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2233 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2234 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2235 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2236 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2237 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2238 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2239 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2240 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2241 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2242 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2243 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2244 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2245 |
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2246 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2247 |
2248 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2249 def test_googlecode_issue_32(self): |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2250 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2251 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2252 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2253 |
22 | 2254 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2255 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2256 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2257 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2258 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2259 | |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2260 # Replay the same test using Latin1 as default encoding: This must fail |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2261 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2262 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2263 DoDelete(_REMOTE, '/instances/%s' % f) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2264 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2265 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2266 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2267 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2268 |
22 | 2269 def test_encodings(self): |
23 | 2270 # Latin-1 (ISO_IR 100) |
22 | 2271 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2272 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2273 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2274 |
2275 # Latin-2 (ISO_IR 101) | |
2276 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2277 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2278 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2279 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2280 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2281 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2282 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2283 def test_storescu_custom_aet(self): |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2284 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2285 # setting of the local AET during C-Store SCU (both in Lua and |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2286 # in the REST API)." |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2287 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2288 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2289 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2290 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2291 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2292 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2293 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2294 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2295 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2296 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2297 'Resources' : [ a['ID'], b['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2298 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2299 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2300 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2301 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2302 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2303 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2304 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2305 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2306 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2307 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2308 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2309 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2310 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2311 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2312 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2313 DropOrthanc(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2314 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2315 |
174 | 2316 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2317 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2318 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2319 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2320 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2321 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2322 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2323 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2324 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2325 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2326 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2327 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2328 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2329 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2330 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2331 def test_resources_since_limit(self): |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2332 # Upload 16 instances |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2333 for i in range(4): |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2334 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2335 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2336 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2337 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2338 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2339 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2340 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2341 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2342 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2343 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2344 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2345 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2346 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2347 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2348 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2349 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2350 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2351 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2352 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2353 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2354 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2355 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2356 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2357 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2358 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2359 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2360 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2361 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2362 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2363 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2364 s = {} |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2365 since = 0 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2366 while True: |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2367 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2368 if len(t) == 0: |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2369 break |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2370 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2371 since += len(t) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2372 for i in t: |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2373 s[i] = None |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2374 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2375 self.assertEqual(16, len(s)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2376 for instance in DoGet(_REMOTE, '/instances'): |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2377 self.assertTrue(instance in s) |
36 | 2378 |
2379 | |
2380 def test_create_pdf(self): | |
2381 # Upload 4 instances | |
2382 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2383 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2384 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2385 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2386 | |
2387 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2388 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2389 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2390 | |
2391 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2392 pdf = f.read() | |
2393 | |
2394 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2395 json.dumps({ | |
2396 'Tags' : { | |
2397 'PatientName' : 'Jodogne', | |
2398 'Modality' : 'CT', | |
2399 }, | |
2400 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2401 })) | |
2402 | |
2403 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2404 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2405 | |
2406 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2407 self.assertEqual(len(b), len(pdf) + 1) | |
2408 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2409 | |
2410 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2411 json.dumps({ | |
2412 'Parent' : brainixPatient, | |
2413 'Tags' : { | |
2414 'PatientName' : 'Jodogne', | |
2415 } | |
2416 }))) | |
2417 | |
2418 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2419 json.dumps({ | |
2420 'Parent' : brainixPatient, | |
2421 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2422 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2423 })) | |
2424 | |
2425 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2426 | |
2427 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2428 json.dumps({ | |
2429 'Parent' : brainixStudy, | |
2430 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2431 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2432 })) | |
2433 | |
2434 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2435 | |
2436 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2437 json.dumps({ | |
2438 'Parent' : brainixEpi, | |
37 | 2439 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2440 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2441 })) | |
2442 | |
2443 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2444 | |
2445 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2446 self.assertEqual(len(b), len(pdf)) | |
2447 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2448 | |
2449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2450 |
2451 | |
2452 def test_create_series(self): | |
2453 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2454 json.dumps({ | |
2455 'Tags' : { | |
40 | 2456 'SpecificCharacterSet' : 'ISO_IR 100', |
2457 'PatientName' : 'Sébastien Jodogne', | |
38 | 2458 'Modality' : 'CT', |
2459 }, | |
2460 'Content' : [ | |
40 | 2461 { |
2462 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2463 'Tags' : { 'ImageComments' : 'Tutu' } | |
2464 }, | |
38 | 2465 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2466 ] | |
2467 })) | |
2468 | |
2469 s = DoGet(_REMOTE, i['Path']) | |
2470 self.assertEqual('Series', s['Type']) | |
2471 self.assertEqual(s['ID'], i['ID']) | |
2472 self.assertEqual(2, len(s['Instances'])) | |
39 | 2473 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2474 self.assertEqual('Complete', s['Status']) | |
40 | 2475 |
2476 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2477 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2478 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2479 if 'ImageComments' in a: | |
2480 self.assertEqual('Tutu', a['ImageComments']) | |
2481 else: | |
2482 self.assertEqual('Tutu', b['ImageComments']) | |
2483 | |
2484 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2485 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2486 'Sébastien Jodogne') | |
47 | 2487 |
2488 | |
2489 def test_create_binary(self): | |
2490 binary = ''.join(map(chr, range(256))) | |
2491 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2492 tags = { | |
2493 'PatientName' : 'Jodogne', | |
2494 '8899-8899' : encoded | |
2495 } | |
2496 | |
2497 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2498 json.dumps({ | |
2499 'Tags' : tags | |
2500 })) | |
2501 | |
2502 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2503 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2504 | |
2505 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2506 json.dumps({ | |
2507 'InterpretBinaryTags' : False, | |
2508 'Tags' : tags | |
2509 })) | |
2510 | |
2511 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2512 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2513 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2514 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2515 def test_patient_ids_collision(self): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2516 # Upload 3 instances from 3 different studies, but with the |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2517 # same PatientID |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2518 for i in range(3): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2519 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2520 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2521 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2522 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2523 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2524 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2525 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2526 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2527 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2528 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2529 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2530 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2531 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2532 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2533 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2534 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2535 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2536 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2537 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2538 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2539 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2540 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2541 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2542 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2543 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2544 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2545 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2546 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2547 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2548 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2549 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2550 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2551 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2552 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2553 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2554 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2555 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2556 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2557 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2558 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2559 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2560 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2561 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2562 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2563 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2564 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2565 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2566 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2567 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2568 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2569 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2570 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2571 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2572 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2573 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2574 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2575 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2576 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2577 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2578 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2579 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2580 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2581 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2582 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2583 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2584 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2585 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2586 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2587 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2588 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2589 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2590 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2591 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2592 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2593 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2594 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2595 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2596 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2597 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2598 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2599 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2600 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2601 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2602 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2603 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2604 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2605 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2606 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2607 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2608 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2609 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2610 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2611 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2612 |
52 | 2613 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2614 | |
2615 | |
2616 def test_compression(self): | |
2617 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2618 | |
2619 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2620 | |
2621 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2622 # uncompress the data before running the test | |
2623 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2624 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2625 | |
2626 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2627 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2628 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2629 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2630 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2631 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2632 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2633 | |
2634 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2635 self.assertTrue('compress' in ops) | |
2636 self.assertTrue('uncompress' in ops) | |
2637 self.assertTrue('is-compressed' in ops) | |
2638 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2639 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2640 | |
2641 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2642 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2643 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2644 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2645 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2646 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2647 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2648 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2649 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2650 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2651 | |
2652 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2653 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2654 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2655 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2656 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2657 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2658 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2659 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2660 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2661 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2662 |
2663 | |
2664 def test_ordered_slices(self): | |
2665 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2666 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2667 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2668 self.assertEqual('Sequence', o['Type']) | |
2669 self.assertEqual(1, len(o['Dicom'])) | |
2670 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2671 self.assertEqual(76, len(o['Slices'])) | |
2672 for j in range(76): | |
2673 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2674 | |
68 | 2675 self.assertEqual(1, len(o['SlicesShort'])) |
2676 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2677 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2678 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2679 | |
53 | 2680 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2681 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2682 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2683 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2684 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2685 | |
2686 self.assertEqual('Volume', o['Type']) | |
2687 self.assertEqual(3, len(o['Dicom'])) | |
2688 self.assertEqual(3, len(o['Slices'])) | |
2689 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2690 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2691 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2692 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2693 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2694 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2695 | |
68 | 2696 self.assertEqual(3, len(o['SlicesShort'])) |
2697 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2698 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2699 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2700 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2701 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2702 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2703 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2704 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2705 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2706 | |
53 | 2707 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2708 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2709 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2710 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2711 | |
2712 self.assertEqual('Sequence', o['Type']) | |
2713 self.assertEqual(2, len(o['Dicom'])) | |
2714 self.assertEqual(2, len(o['Slices'])) | |
2715 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2716 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2717 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2718 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2719 |
68 | 2720 self.assertEqual(2, len(o['SlicesShort'])) |
2721 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2722 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2723 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2724 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2725 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2726 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2727 | |
2728 | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2729 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2730 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2731 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2732 |
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2733 # No matching patient, so no job is created |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2734 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2735 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2736 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2737 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2738 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2739 |
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2740 # 1 Matching patient, track the job |
138 | 2741 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
2742 '--study', | |
2743 '-k', '0008,0052=STUDY', | |
2744 '-k', 'AccessionNumber=A10003245599' | |
2745 ]))) | |
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2746 |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2747 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2748 |
55 | 2749 |
2750 def test_dicom_to_json(self): | |
2751 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2752 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2753 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2754 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2755 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2756 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2757 # Tags for compatibility with DCMTK 3.6.0 |
2758 'RETIRED_OtherPatientIDs', | |
2759 'OtherPatientIDs', | |
2760 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2761 ])) |
55 | 2762 |
2763 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2764 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2765 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2766 ])) |
55 | 2767 |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2768 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2769 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2770 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2771 ])) |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2772 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2773 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2774 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2775 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2776 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2777 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2778 self.assertEqual(aa, tt) |
57 | 2779 |
2780 | |
2781 def test_batch_archive(self): | |
2782 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2783 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2784 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2785 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2786 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2787 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2788 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2789 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2790 | |
2791 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2792 z = zipfile.ZipFile(StringIO(s), "r") | |
2793 self.assertEqual(0, len(z.namelist())) | |
2794 | |
2795 # One patient | |
2796 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2797 z = zipfile.ZipFile(StringIO(s), "r") | |
2798 self.assertEqual(4, len(z.namelist())) | |
2799 | |
2800 # One patient + twice its study + one series from other patient | |
2801 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2802 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2803 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2804 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2805 ]) | |
2806 z = zipfile.ZipFile(StringIO(s), "r") | |
2807 self.assertEqual(6, len(z.namelist())) | |
2808 | |
2809 # One patient + one series + one instance | |
2810 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2811 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2812 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2813 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2814 ]) | |
2815 z = zipfile.ZipFile(StringIO(s), "r") | |
2816 self.assertEqual(7, len(z.namelist())) | |
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2817 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2818 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2819 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2820 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2821 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2822 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2823 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2824 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2825 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2826 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2827 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2828 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2829 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2830 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2831 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2832 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2833 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2834 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2835 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2836 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2837 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2838 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2839 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2840 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2841 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2842 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2843 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2844 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2845 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2846 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2847 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2848 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2849 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2850 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2851 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2852 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2853 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2854 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2855 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2856 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2857 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2858 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2859 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2860 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2861 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2862 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2863 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2864 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2865 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2866 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2867 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2868 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2869 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2870 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2871 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2872 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2873 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2874 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2875 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2876 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2877 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2878 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2879 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2880 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2881 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2882 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2883 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2884 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2885 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2886 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2887 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2888 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2889 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2890 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2891 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2892 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2893 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2894 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2895 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2896 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2897 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2898 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2899 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2900 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2901 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2902 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2903 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2904 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2905 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2906 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2907 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2908 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2909 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2910 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2911 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2912 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2913 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2914 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2915 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2916 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2917 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2918 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2919 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2920 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2921 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2922 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2923 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2924 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2925 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2926 self.assertEqual(2, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2927 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2928 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2929 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2930 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2931 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2932 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2933 t = map(lambda x: x.strip(), s[0].split('\\')) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2934 self.assertTrue('PT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2935 self.assertTrue('CT' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2936 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2937 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2938 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2939 self.assertEqual(1, len(s)) |
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
2940 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2941 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2942 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2943 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2944 |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2945 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2946 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2947 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2948 |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2949 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2950 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2951 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2952 |
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2953 if md5 == None: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2954 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2955 else: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2956 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2957 self.assertEqual(m, md5) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2958 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2959 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2960 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2961 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2962 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2963 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2964 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2965 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2966 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2967 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2968 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2969 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2970 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
79 | 2971 |
2972 | |
2973 def test_raw_frame(self): | |
2974 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
2975 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2976 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2977 self.assertEqual(512 * 512 * 2, len(a)) | |
2978 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
2979 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
2980 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
2981 | |
2982 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2983 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2984 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
2985 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
2986 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
2987 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2988 self.assertEqual("L", im.mode) | |
2989 self.assertEqual(512, im.size[0]) | |
2990 self.assertEqual(512, im.size[1]) | |
2991 | |
2992 # Test an image with 2 JPEG frames spread over multiple fragments | |
2993 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
2994 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2995 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2996 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
2997 self.assertEqual(69214, len(a)) | |
2998 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
2999 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3000 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3001 self.assertEqual("RGB", im.mode) | |
3002 self.assertEqual(512, im.size[0]) | |
3003 self.assertEqual(512, im.size[1]) | |
3004 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
3005 self.assertEqual("RGB", im.mode) | |
3006 self.assertEqual(512, im.size[0]) | |
3007 self.assertEqual(512, im.size[1]) | |
81 | 3008 |
3009 | |
3010 | |
3011 def test_rest_movescu(self): | |
3012 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3013 | |
3014 # Upload 4 instances | |
3015 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3016 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3017 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3018 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3019 | |
3020 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3021 for p in DoGet(_REMOTE, '/patients'): | |
3022 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3023 DoDelete(_REMOTE, '/patients/%s' % p) | |
3024 | |
3025 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3026 | |
3027 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3028 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3029 'Resources' : [ | |
3030 { | |
3031 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3032 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3033 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3034 } | |
3035 ]}) | |
3036 | |
3037 # Upload series Brainix/Flair/* | |
3038 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3039 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3040 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3041 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3042 | |
3043 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3044 'Resources' : [ | |
3045 { | |
3046 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3047 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3048 } | |
3049 ]}) | |
3050 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3051 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3052 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3053 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3054 | |
3055 # Upload series Brainix/Epi/* | |
3056 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3057 'Resources' : [ | |
3058 { | |
3059 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3060 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3061 } | |
3062 ]}) | |
3063 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3064 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3065 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3066 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3067 | |
3068 # Upload study Knee/* | |
3069 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3070 'Resources' : [ | |
3071 { | |
3072 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3073 } | |
3074 ]}) | |
3075 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3076 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3077 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3078 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3079 | |
3080 # Reset | |
3081 for p in DoGet(_REMOTE, '/patients'): | |
3082 DoDelete(_REMOTE, '/patients/%s' % p) | |
3083 | |
3084 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3085 | |
3086 | |
3087 # Upload all at once | |
3088 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3089 'Resources' : [ | |
3090 { | |
3091 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3092 }, | |
3093 { | |
3094 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3095 } | |
3096 ]}) | |
3097 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3098 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3099 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3100 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3101 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3102 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3103 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3104 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3105 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3106 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3107 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3108 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3109 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3110 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3111 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3112 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3113 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3114 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3115 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3116 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3117 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3118 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3119 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3120 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3121 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3122 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3123 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3124 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3125 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3126 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3127 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3128 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3129 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3130 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3131 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3132 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3133 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3134 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3135 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3136 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3137 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3138 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3139 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3140 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3141 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3142 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3143 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3144 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3145 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3146 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3147 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3148 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3149 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3150 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3151 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3152 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3153 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3154 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3155 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3156 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3157 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3158 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3159 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3160 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3161 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3162 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3163 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3164 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3165 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3166 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3167 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3168 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3169 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3170 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3171 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3172 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3173 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3174 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3175 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3176 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3177 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3178 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3179 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3180 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3181 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3182 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3183 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3184 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3185 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3186 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3187 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3188 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3189 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3190 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3191 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3192 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3193 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3194 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3195 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3196 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3197 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3198 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3199 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3200 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3201 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3202 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3203 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3204 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3205 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3206 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3207 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3208 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3209 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3210 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3211 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3212 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3213 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3214 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3215 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3216 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3217 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3218 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3219 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3220 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3221 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3222 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3223 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3224 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3225 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3226 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3227 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3228 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3229 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3230 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3231 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3232 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3233 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3234 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3235 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3236 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3237 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3238 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3239 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3240 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3241 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3242 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3243 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3244 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3245 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3246 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3247 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3248 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3249 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3250 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3251 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3252 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3253 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3254 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3255 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3256 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3257 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3258 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3259 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3260 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3261 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3262 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3263 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3264 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3265 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3266 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3267 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3268 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3269 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3270 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3271 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3272 }, |
119 | 3273 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3274 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3275 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3276 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3277 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3278 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3279 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3280 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3281 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3282 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3283 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3284 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3285 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3286 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3287 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3288 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3289 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3290 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3291 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3292 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3293 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3294 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3295 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3296 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3297 |
104 | 3298 def test_httpClient_lua(self): |
3299 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3300 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3301 | |
3302 self.assertIn('OK', result) | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3303 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3304 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3305 def test_bitbucket_issue_44(self): |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3306 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3307 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3308 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3309 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3310 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3311 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3312 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3313 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3314 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3315 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3316 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3317 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3318 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3319 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3320 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3321 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3322 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3323 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3324 self.assertEqual(2010, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3325 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3326 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3327 # This is the chest image, with MONOCHROME1. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3328 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3329 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3330 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3331 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3332 else: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3333 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3334 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3335 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3336 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3337 self.assertEqual(1572, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3338 self.assertEqual(2010, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3339 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3340 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3341 # white (255), should be rendered as white (255) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3342 self.assertEqual(255, im.getpixel((0,0))) |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3343 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3344 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3345 def test_bitbucket_issue_42(self): |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3346 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
123 | 3347 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3348 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3349 modified = DoPost(_REMOTE, |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3350 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3351 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3352 'application/json') |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3353 self.assertTrue('PatientID' in modified) |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3354 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3355 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3356 def test_rest_find_limit(self): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3357 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3358 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3359 |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3360 # Upload 6 instances |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3361 brainix = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3362 knee = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3363 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3364 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3365 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3366 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3367 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3368 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3369 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3370 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3371 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3372 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3373 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3374 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3375 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3376 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3377 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3378 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3379 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3380 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3381 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3382 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3383 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3384 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3385 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3386 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3387 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3388 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3389 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3390 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3391 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3392 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3393 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3394 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3395 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3396 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3397 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3398 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3399 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3400 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3401 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3402 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3403 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3404 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3405 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3406 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3407 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3408 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3409 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3410 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3411 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3412 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3413 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3414 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3415 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3416 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3417 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3418 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3419 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3420 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3421 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3422 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3423 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3424 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3425 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3426 # "PHI remaining after anonymization" |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3427 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3428 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3429 def GetAnonymizedTags(study, version): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3430 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3431 { 'DicomVersion' : version }, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3432 'application/json') ['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3433 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3434 self.assertEqual(1, len(a)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3435 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3436 instance = a[0]['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3437 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3438 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3439 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3440 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3441 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3442 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3443 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3444 # (Patient's Mother's Birth Name) tags |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3445 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3446 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3447 'application/json')['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3448 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3449 # Use Table E.1-1 from PS 3.15-2008 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3450 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3451 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3452 self.assertTrue('0032,1033' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3453 self.assertTrue('0010,1060' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3454 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3455 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3456 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3457 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3458 self.assertFalse('0032,1033' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3459 self.assertFalse('0010,1060' in tags) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3460 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3461 t = {} |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3462 for (key, value) in tags.iteritems(): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3463 t[value['Name']] = value['Value'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3464 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3465 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3466 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3467 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3468 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3469 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3470 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3471 with tempfile.NamedTemporaryFile(delete = True) as f: |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3472 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3473 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3474 f.flush() |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3475 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3476 stderr = subprocess.STDOUT).split('\n') |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3477 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3478 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3479 def test_bitbucket_issue_55(self): |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3480 def Run(modify, query): |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3481 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3482 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3483 operation = 'modify' if modify else 'anonymize' |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3484 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3485 self.assertRaises(Exception, lambda: DoPost( |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3486 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3487 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3488 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3489 query["Force"] = True |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3490 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3491 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3492 DoDelete(_REMOTE, a) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3493 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3494 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3495 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3496 UploadInstance(_REMOTE, 'DummyCT.dcm') |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3497 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3498 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3499 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3500 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3501 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3502 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3503 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3504 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3505 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3506 |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3507 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3508 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3509 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3510 |
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3511 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3512 def test_bitbucket_issue_56(self): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3513 # Case-insensitive matching over accents. This test assumes |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3514 # that the "CaseSensitivePN" configuration option of Orthanc |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3515 # is set to "false" (default value). |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3516 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3517 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3518 def Check(name, expected, expectedSensitive): |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3519 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3520 '-k', '0008,0052=PATIENT', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3521 '-k', 'PatientName=%s' % name ]) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3522 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3523 self.assertEqual(expected, len(patientNames)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3524 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3525 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3526 'CaseSensitive' : False, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3527 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3528 self.assertEqual(expected, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3529 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3530 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3531 'CaseSensitive' : True, |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3532 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3533 self.assertEqual(expectedSensitive, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3534 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3535 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3536 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3537 # WildcardConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3538 Check('TeSt*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3539 Check('TeSt-a*', 0, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3540 Check('TeSt-É*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3541 Check('TeSt-é*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3542 Check('Test-é*', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3543 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3544 # ListConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3545 Check('Test-éüäöò\\nope', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3546 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3547 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3548 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3549 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3550 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3551 |
125 | 3552 |
3553 def test_gbk_alias(self): | |
3554 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3555 # This test fails on Orthanc <= 1.3.0 | |
3556 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3557 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3558 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3559 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3560 |
3561 | |
3562 def test_long_tag(self): | |
3563 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3564 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3565 | |
3566 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3567 self.assertTrue('0018,1020' in tags) | |
3568 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3569 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3570 self.assertEqual(None, tags['0018,1020']['Value']) | |
3571 | |
3572 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3573 self.assertTrue('0018,1020' in tags) | |
3574 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3575 self.assertEqual('String', tags['0018,1020']['Type']) | |
3576 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3577 | |
3578 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3579 self.assertTrue('SoftwareVersions' in tags) | |
3580 self.assertEqual(None, tags['SoftwareVersions']) | |
3581 self.assertTrue('HeartRate' in tags) | |
3582 self.assertEqual(474, int(tags['HeartRate'])) | |
3583 | |
3584 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3585 self.assertTrue('SoftwareVersions' in tags) | |
3586 self.assertEqual(None, tags['SoftwareVersions']) | |
3587 | |
3588 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3589 self.assertTrue('SoftwareVersions' in tags) | |
3590 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3591 | |
3592 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3593 self.assertTrue('SoftwareVersions' in tags) | |
3594 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3595 | |
3596 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3597 self.assertEqual(1, len(tags)) | |
3598 self.assertTrue(i in tags.keys()) | |
3599 self.assertTrue('0018,1020' in tags[i]) | |
3600 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3601 | |
3602 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3603 self.assertEqual(1, len(tags)) | |
3604 self.assertTrue(i in tags.keys()) | |
3605 self.assertTrue('0018,1020' in tags[i]) | |
3606 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3607 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3608 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3609 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3610 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3612 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3613 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3614 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3615 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3616 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3617 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3618 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3619 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3620 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3621 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3622 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3623 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3624 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3625 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3626 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3627 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3628 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3629 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3630 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3631 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3632 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3633 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3634 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3635 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3636 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3637 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3638 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3639 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3640 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3641 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3642 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3643 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3644 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3645 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3646 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3647 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3648 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3649 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3650 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3651 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3652 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3653 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3654 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3655 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3656 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3657 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3658 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3659 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3660 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3661 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3662 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3663 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3664 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3665 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3666 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3667 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3668 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3669 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3670 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3671 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3672 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3673 DoGet(_REMOTE, FRAME % a2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3674 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3675 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3676 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3677 DoGet(_REMOTE, FRAME % b1)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3678 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3679 DoGet(_REMOTE, FRAME % b2)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3680 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3681 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3682 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3683 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3684 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3685 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3686 for i in range(3): |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3687 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3688 DoGet(_REMOTE, SOP % (a2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3689 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3690 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3691 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3692 DoGet(_REMOTE, SOP % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3693 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3694 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3695 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3696 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3697 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3698 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3699 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3700 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3701 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3702 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3703 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3704 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3705 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3706 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3707 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3708 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3709 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3710 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3711 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3712 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3713 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3714 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3715 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3716 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3717 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3718 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3719 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3720 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3721 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3722 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3723 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3724 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3725 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3726 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3727 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3728 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3729 DoGet(_REMOTE, SOP % (a2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3730 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3731 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3732 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3733 DoGet(_REMOTE, SOP % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3734 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3735 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3736 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3737 DoGet(_REMOTE, CLASS % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3738 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3739 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3740 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3741 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3742 def test_anonymize_relationships_3(self): |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3743 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3744 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3745 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3746 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3747 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3748 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3749 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3750 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3751 self.assertEqual(2, len(a)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3752 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3753 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3754 sr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3755 mr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3756 else: |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3757 sr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3758 mr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3759 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3760 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3761 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3762 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3763 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3764 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3765 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3766 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3767 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3768 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3769 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3770 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3771 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3772 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3773 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3774 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3775 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3776 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3777 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3778 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3779 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3780 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3781 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3782 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3783 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3784 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3785 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3786 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3787 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3788 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3789 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3790 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3791 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3792 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3793 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3794 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3795 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3796 self.assertEqual(str(content1), str(content2)) |
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3797 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3798 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3799 def test_bitbucket_issue_94(self): |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3800 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3801 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3802 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3803 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3804 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3805 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3806 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3807 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3808 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3809 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3810 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3811 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3812 self.assertEqual(1, len(a)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3813 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3814 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3815 self.assertEqual(1, len(b)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3816 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3817 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3818 self.assertEqual(1, len(c)) |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3819 |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3820 self.assertEqual(a, b) # Modified DICOM |
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3821 self.assertNotEqual(a, c) # Anonymized DICOM |
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3822 |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3823 |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3824 def test_metadata_origin(self): |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3825 # Upload using the REST API |
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3826 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3827 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3828 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3829 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3830 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3831 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3832 |
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3833 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3834 self.assertEqual('RestApi', m['Origin']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3835 self.assertEqual('', m['RemoteAET']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3836 self.assertNotEqual('', m['RemoteIP']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3837 self.assertFalse('CalledAET' in m) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3838 self.assertEqual('alice', m['HttpUsername']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3839 |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3840 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3841 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3842 self.assertEqual('1', m['IndexInSeries']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3843 self.assertTrue('ReceptionDate' in m) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3844 |
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3845 DoDelete(_REMOTE, '/instances/%s' % i) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3846 |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3847 # Upload using the DICOM protocol |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3848 subprocess.check_call([ FindExecutable('storescu'), |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3849 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3850 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3851 '-xw' ]) # Propose JPEG2000 |
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3852 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3853 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3854 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3855 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3856 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3857 |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3858 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3859 self.assertEqual('DicomProtocol', m['Origin']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3860 self.assertEqual('STORESCU', m['RemoteAET']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3861 self.assertNotEqual('', m['RemoteIP']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3862 self.assertEqual('ANY-SCP', m['CalledAET']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3863 self.assertFalse('HttpUsername' in m) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3864 |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3865 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3866 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3867 self.assertEqual('1', m['IndexInSeries']) |
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3868 self.assertTrue('ReceptionDate' in m) |
147 | 3869 |
3870 | |
3871 def test_lua_deadlock(self): | |
3872 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
3873 # is with the lua script I'm using for conversion of images to | |
3874 # JPEG2000. When the script is used with 1.4.0 the first | |
3875 # instance appears to be stored and then everything just | |
3876 # halts, ie Orthanc wont respond to anything after that." | |
3877 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 3878 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 3879 |
3880 subprocess.check_call([ FindExecutable('storescu'), | |
3881 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
3882 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
3883 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
3884 ]) | |
3885 | |
3886 instances = DoGet(_REMOTE, '/instances') | |
3887 self.assertEqual(2, len(instances)) | |
3888 | |
3889 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
3890 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 3891 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 3892 self.assertEqual(t1, t2); |
154
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3893 |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3894 |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3895 def test_find_group_length(self): |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3896 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3897 # one of the Generic Group Length tags (*, 0x0000) |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3898 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3899 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3900 self.assertFalse('UnableToProcess' in result) |
4a533d003080
test_find_group_length
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
147
diff
changeset
|
3901 self.assertFalse('E:' in result) |
179
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3902 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3903 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3904 def test_split(self): |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3905 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3906 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3907 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3908 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3909 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3910 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3911 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3912 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3913 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3914 info = DoGet(_REMOTE, '/studies/%s' % study) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3915 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3916 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3917 job = MonitorJob2(_REMOTE, lambda: DoPost |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3918 (_REMOTE, '/studies/%s/split' % study, { |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3919 'Series' : [ t2 ], |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3920 'Replace' : { 'PatientName' : 'Hello' }, |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3921 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 3922 'KeepSource' : False, |
3923 'Asynchronous' : True | |
179
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3924 })) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3925 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3926 self.assertNotEqual(None, job) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3927 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3928 studies = set(DoGet(_REMOTE, '/studies')) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3929 self.assertEqual(2, len(studies)) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3930 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3931 series = set(DoGet(_REMOTE, '/series')) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3932 self.assertEqual(2, len(series)) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3933 self.assertTrue(t1 in series) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3934 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3935 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3936 self.assertTrue(study in studies) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3937 self.assertTrue(study2 in studies) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3938 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3939 info = DoGet(_REMOTE, '/studies/%s' % study2) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3940 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3941 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3942 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3943 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3944 def test_merge(self): |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3945 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3946 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3947 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3948 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3949 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3950 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3951 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3952 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3953 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3954 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3955 job = MonitorJob2(_REMOTE, lambda: DoPost |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3956 (_REMOTE, '/studies/%s/merge' % knee, { |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3957 'Resources' : [ brainix ], |
181 | 3958 'KeepSource' : True, |
3959 'Synchronous' : False | |
179
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3960 })) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3961 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3962 self.assertNotEqual(None, job) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3963 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3964 studies = set(DoGet(_REMOTE, '/studies')) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3965 self.assertEqual(2, len(studies)) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3966 self.assertTrue(knee in studies) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3967 self.assertTrue(brainix in studies) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3968 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3969 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3970 self.assertTrue(t1 in series) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3971 series.remove(t1) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3972 self.assertEqual(1, len(series)) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3973 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3974 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3975 self.assertEqual(1, len(instances)) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3976 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3977 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3978 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3979 self.assertEqual(1, len(instances)) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3980 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3981 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3982 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3983 self.assertEqual(1, len(instances)) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3984 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3985 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3986 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3987 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3988 for key in tags['PatientMainDicomTags']: |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3989 self.assertEqual(a[key], merged[key]) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3990 if (key in b and key != 'PatientSex'): |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3991 self.assertNotEqual(a[key], b[key]) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3992 |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3993 for key in tags['MainDicomTags']: |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3994 # Not in the patient/study module |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3995 if (not key in [ 'InstitutionName', |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3996 'RequestingPhysician', |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3997 'RequestedProcedureDescription', ]): |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3998 self.assertEqual(a[key], merged[key]) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
3999 if (key in b): |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
4000 self.assertNotEqual(a[key], b[key]) |
8a2dd77d4035
testing split/merge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
177
diff
changeset
|
4001 |
187 | 4002 |
4003 def test_async_archive(self): | |
4004 # Testing the asynchronous generation of archives/medias (new | |
4005 # in Orthanc 1.4.3) | |
4006 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4007 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4008 | |
4009 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4010 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4011 | |
4012 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4013 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4014 'Synchronous' : False | |
4015 })) | |
4016 | |
4017 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4018 self.assertEqual(1, len(z.namelist())) | |
4019 self.assertFalse('DICOMDIR' in z.namelist()) | |
4020 | |
4021 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
4022 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4023 'Synchronous' : False | |
4024 })) | |
4025 | |
4026 # The archive from the first job has been replaced by the | |
4027 # archive from second job (as MediaArchiveSize == 1) | |
4028 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4029 | |
4030 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4031 self.assertEqual(2, len(z.namelist())) | |
4032 self.assertTrue('DICOMDIR' in z.namelist()) | |
4033 | |
4034 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4035 (_REMOTE, '/tools/create-archive', { | |
4036 'Synchronous' : False, | |
4037 'Resources' : [ kneeT1, kneeT2 ], | |
4038 })) | |
4039 | |
4040 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4041 self.assertEqual(2, len(z.namelist())) | |
4042 self.assertFalse('DICOMDIR' in z.namelist()) | |
4043 | |
4044 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4045 (_REMOTE, '/tools/create-media', { | |
4046 'Synchronous' : False, | |
4047 'Resources' : [ kneeT1, kneeT2 ], | |
4048 })) | |
4049 | |
4050 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4051 self.assertEqual(3, len(z.namelist())) | |
4052 self.assertTrue('DICOMDIR' in z.namelist()) | |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4053 |
187 | 4054 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4055 def test_queries_hierarchy(self): |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4056 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4057 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4058 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4059 tags = { |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4060 'NumberOfPatientRelatedInstances' : '', |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4061 'NumberOfPatientRelatedSeries' : '', |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4062 'NumberOfPatientRelatedStudies' : '', |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4063 'NumberOfStudyRelatedInstances' : '', |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4064 'NumberOfStudyRelatedSeries' : '', |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4065 'NumberOfSeriesRelatedInstances' : '', |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4066 } |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4067 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4068 tags2 = copy.copy(tags) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4069 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4070 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4071 patient = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4072 'Level' : 'Patient', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4073 'Query' : tags2 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4074 }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4075 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4076 study = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4077 'Level' : 'Study', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4078 'Query' : tags2 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4079 }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4080 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4081 series = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4082 'Level' : 'Series', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4083 'Query' : tags2 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4084 }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4085 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4086 instance = DoPost(_REMOTE, '/modalities/self/query', { |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4087 'Level' : 'Instance', |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4088 'Query' : tags2 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4089 }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4090 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4091 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4092 self.assertEqual(1, len(p)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4093 self.assertEqual('887', p[0]['PatientID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4094 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4095 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4096 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4097 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4098 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4099 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4100 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4101 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4102 self.assertEqual(1, len(p)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4103 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4104 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4105 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4106 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4107 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4108 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4109 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4110 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4111 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4112 self.assertEqual(1, len(p)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4113 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4114 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4115 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4116 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4117 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4118 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4119 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4120 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4121 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4122 self.assertEqual(1, len(p)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4123 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4124 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4125 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4126 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4127 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4128 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4129 |
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4130 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4131 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4132 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4133 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4134 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4135 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4136 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4137 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4138 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4139 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4140 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4141 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4142 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4143 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4144 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4145 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4146 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4147 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4148 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4149 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4150 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4151 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4152 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4153 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4154 |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4155 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4156 def test_dicom_disk_size(self): |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4157 dicomSize = 0 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4158 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4159 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4160 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4161 for i in range(2): |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4162 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4163 UploadInstance(_REMOTE, p) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4164 dicomSize += os.path.getsize(GetDatabasePath(p)) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4165 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4166 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4167 self.assertEqual(2, s['CountInstances']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4168 self.assertEqual(2, s['CountSeries']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4169 self.assertEqual(1, s['CountStudies']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4170 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4171 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4172 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4173 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4174 |