Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 192:6ff9d035b26b Orthanc-1.5.1
fix
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Sat, 15 Dec 2018 10:50:45 +0100 |
| parents | bc8bc83465dc |
| children | 9f7ae64c0fda |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
| 14 | 24 import tempfile |
| 3 | 25 import unittest |
| 36 | 26 import base64 |
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27 import copy |
| 3 | 28 |
| 11 | 29 from PIL import ImageChops |
| 3 | 30 from Toolbox import * |
| 13 | 31 from xml.dom import minidom |
| 3 | 32 |
| 33 _LOCAL = None | |
| 34 _REMOTE = None | |
| 35 | |
| 36 | |
| 37 def SetOrthancParameters(local, remote): | |
| 38 global _LOCAL, _REMOTE | |
| 39 _LOCAL = local | |
| 40 _REMOTE = remote | |
| 41 | |
| 42 | |
| 14 | 43 def ExtractDicomTags(rawDicom, tags): |
| 44 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 45 f.write(rawDicom) | |
| 46 f.flush() | |
| 45 | 47 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 48 |
| 49 result = [] | |
| 50 for tag in tags: | |
| 51 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 52 if match == None: | |
| 53 result.append('') | |
| 54 else: | |
| 55 result.append(match.group(1)) | |
| 56 | |
| 57 return result | |
| 58 | |
| 59 | |
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60 def CompareLists(a, b): |
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61 if len(a) != len(b): |
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62 return False |
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63 |
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64 for i in range(len(a)): |
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65 d = a[i] - b[i] |
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66 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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67 return False |
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68 |
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69 return True |
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70 |
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71 |
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72 def CompareTags(a, b, tagsToIgnore): |
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73 for i in tagsToIgnore: |
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74 if i in a: |
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75 del a[i] |
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76 if i in b: |
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77 del b[i] |
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78 |
| 123 | 79 if a.keys() == b.keys(): |
| 80 return True | |
| 81 else: | |
| 82 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 83 return False | |
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84 |
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85 |
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86 def CallFindScu(args): |
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87 p = subprocess.Popen([ FindExecutable('findscu'), |
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88 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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89 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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90 stderr=subprocess.PIPE) |
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91 return p.communicate()[1] |
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92 |
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93 |
| 142 | 94 def GetMoveScuCommand(): |
| 95 return [ | |
| 96 FindExecutable('movescu'), | |
| 97 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 98 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 99 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 100 _REMOTE['Server'], | |
| 101 str(_REMOTE['DicomPort']) | |
| 102 ] | |
| 103 | |
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104 def CallMoveScu(args): |
| 142 | 105 subprocess.check_call(GetMoveScuCommand() + args, |
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106 stderr=subprocess.PIPE) |
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107 |
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108 |
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109 |
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110 def GenerateTestSequence(): |
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111 return [ |
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112 { |
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113 'StudyDescription': 'Hello^', |
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114 'ReferencedStudySequence' : [ |
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115 { |
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116 'StudyDescription': 'Toto', |
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117 }, |
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118 { |
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119 'StudyDescription': 'Tata', |
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120 }, |
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121 ] |
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122 }, |
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123 { |
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124 'StudyDescription': 'Sébastien^', |
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125 'StudyDate' : '19700202', |
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126 } |
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127 ] |
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128 |
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129 |
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130 |
| 15 | 131 |
| 3 | 132 class Orthanc(unittest.TestCase): |
| 133 def setUp(self): | |
| 83 | 134 if (sys.version_info >= (3, 0)): |
| 135 # Remove annoying warnings about unclosed socket in Python 3 | |
| 136 import warnings | |
| 137 warnings.simplefilter("ignore", ResourceWarning) | |
| 138 | |
| 3 | 139 DropOrthanc(_LOCAL) |
| 140 DropOrthanc(_REMOTE) | |
| 174 | 141 UninstallLuaCallbacks(_REMOTE) |
| 45 | 142 #print "In test", self._testMethodName |
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143 |
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144 def AssertSameImages(self, truth, url): |
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145 im = GetImage(_REMOTE, url) |
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146 self.assertTrue(CompareLists(truth, im.getdata())) |
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147 |
| 3 | 148 |
| 149 def test_system(self): | |
| 177 | 150 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 151 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 152 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 153 | |
| 154 systemInfo = DoGet(_REMOTE, '/system') | |
| 155 if systemInfo["Version"] == "mainline": | |
| 156 print "Skipping version checks since you're currently in mainline" | |
| 157 return | |
| 158 | |
| 173 | 159 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 160 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 161 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 162 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 163 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 164 |
| 165 def test_upload(self): | |
| 173 | 166 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 167 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 168 | |
| 169 sizeDummyCT = 2472 | |
| 170 sizeOverwrite = 2476 | |
| 171 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 172 | |
| 3 | 173 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 174 self.assertEqual(instance, u['ID']) |
| 3 | 175 self.assertEqual('Success', u['Status']) |
| 173 | 176 |
| 183 | 177 if True: |
| 178 # New test for Orthanc 1.4.3 | |
| 179 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 180 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 181 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 182 | |
| 173 | 183 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 184 s = sizeDummyCT + j | |
| 185 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 186 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 187 | |
| 3 | 188 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 189 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 190 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 191 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 192 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 193 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 194 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 195 | |
| 196 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 197 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 198 self.assertEqual('KNIX', i['PatientName']) |
| 199 | |
| 200 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 201 # Overwriting | |
| 202 self.assertEqual('Success', u['Status']) | |
| 203 else: | |
| 204 self.assertEqual('AlreadyStored', u['Status']) | |
| 205 | |
| 206 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 207 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 208 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 209 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 210 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 211 | |
| 212 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 213 # Overwriting | |
| 214 self.assertEqual('Success', u['Status']) | |
| 215 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 216 s2 = sizeOverwrite + j2 | |
| 217 self.assertNotEqual(s, s2) | |
| 218 self.assertNotEqual(j, j2) | |
| 219 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 220 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 221 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 222 self.assertEqual('ANOTHER', i['PatientName']) | |
| 223 else: | |
| 224 self.assertEqual('AlreadyStored', u['Status']) | |
| 225 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 226 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 227 |
| 5 | 228 def test_upload_2(self): |
| 3 | 229 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 230 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 231 self.assertEqual(i, instance['ID']) | |
| 232 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 233 instance['MainDicomTags']['SOPInstanceUID']) | |
| 234 | |
| 235 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 236 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 237 series['MainDicomTags']['SeriesInstanceUID']) | |
| 238 | |
| 239 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 240 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 241 study['MainDicomTags']['StudyInstanceUID']) | |
| 242 | |
| 243 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 244 self.assertEqual('ozp00SjY2xG', | |
| 245 patient['MainDicomTags']['PatientID']) | |
| 246 | |
| 247 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 248 self.assertEqual(2472, len(dicom)) | |
| 249 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 250 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 251 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 252 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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253 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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254 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 255 |
| 256 | |
| 5 | 257 def test_images(self): |
| 258 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 259 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 260 |
| 5 | 261 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 262 self.assertEqual("L", im.mode) | |
| 263 self.assertEqual(512, im.size[0]) | |
| 264 self.assertEqual(358, im.size[1]) | |
| 265 | |
| 266 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 267 self.assertEqual("L", im.mode) | |
| 268 self.assertEqual(512, im.size[0]) | |
| 269 self.assertEqual(358, im.size[1]) | |
| 270 | |
| 271 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 272 self.assertEqual(512, im.size[0]) | |
| 273 self.assertEqual(358, im.size[1]) | |
| 274 | |
| 275 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 276 self.assertEqual("L", im.mode) | |
| 277 self.assertEqual(512, im.size[0]) | |
| 278 self.assertEqual(358, im.size[1]) | |
| 279 | |
| 280 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 281 self.assertEqual("L", im.mode) | |
| 282 self.assertEqual(512, im.size[0]) | |
| 283 self.assertEqual(358, im.size[1]) | |
| 284 | |
| 285 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 286 self.assertEqual(512, im.size[0]) | |
| 287 self.assertEqual(358, im.size[1]) | |
| 64 | 288 |
| 289 # This is Little Endian Explicit | |
| 290 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 291 | |
| 6 | 292 |
| 293 def test_hierarchy(self): | |
| 294 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 295 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 296 UploadFolder(_REMOTE, 'Knee/T1') | |
| 297 UploadFolder(_REMOTE, 'Knee/T2') | |
| 298 | |
| 299 p = DoGet(_REMOTE, '/patients') | |
| 300 s = DoGet(_REMOTE, '/studies') | |
| 301 t = DoGet(_REMOTE, '/series') | |
| 302 self.assertEqual(2, len(p)) | |
| 303 self.assertEqual(2, len(s)) | |
| 304 self.assertEqual(4, len(t)) | |
| 305 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 306 | |
| 307 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 308 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 309 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 310 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 311 | |
| 312 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 313 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 314 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 315 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 316 | |
| 317 self.assertTrue(brainixPatient in p) | |
| 318 self.assertTrue(kneePatient in p) | |
| 319 self.assertTrue(brainixStudy in s) | |
| 320 self.assertTrue(kneeStudy in s) | |
| 321 self.assertTrue(brainixEpi in t) | |
| 322 self.assertTrue(brainixFlair in t) | |
| 323 self.assertTrue(kneeT1 in t) | |
| 324 self.assertTrue(kneeT2 in t) | |
| 325 | |
| 326 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 327 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 328 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 329 | |
| 330 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 331 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 332 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 333 | |
| 334 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 335 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 336 | |
| 337 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 338 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 339 | |
| 340 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 341 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 342 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 343 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 344 | |
| 345 for patient in p: | |
| 346 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 347 self.assertEqual(patient, study['ParentPatient']) | |
| 348 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 349 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 350 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 351 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 352 | |
| 353 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 354 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 355 | |
| 356 | |
| 357 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 358 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 359 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 360 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 361 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 362 self.assertEqual(None, r) | |
| 363 | |
| 364 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 365 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 366 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 367 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 368 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 369 self.assertEqual('Study', r['Type']) | |
| 370 self.assertEqual(kneeStudy, r['ID']) | |
| 371 | |
| 372 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 373 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 374 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 375 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 376 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 377 self.assertEqual('Series', r['Type']) | |
| 378 self.assertEqual(kneeT1, r['ID']) | |
| 379 | |
| 380 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 381 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 382 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 383 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 384 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 385 self.assertEqual(None, r) | |
| 386 | |
| 387 DropOrthanc(_REMOTE) | |
| 388 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 389 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 390 |
| 391 | |
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392 def test_multiframe(self): |
| 7 | 393 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 394 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 395 | |
| 396 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 397 self.assertEqual("L", im.mode) | |
| 398 self.assertEqual(512, im.size[0]) | |
| 399 self.assertEqual(512, im.size[1]) | |
| 400 | |
| 401 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 402 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 403 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 404 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 405 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 406 | |
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407 |
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408 def test_changes(self): |
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409 # Check emptiness |
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410 c = DoGet(_REMOTE, '/changes') |
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411 self.assertEqual(0, len(c['Changes'])) |
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412 self.assertEqual(0, c['Last']) |
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413 self.assertTrue(c['Done']) |
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414 c = DoGet(_REMOTE, '/changes?last') |
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415 self.assertEqual(0, len(c['Changes'])) |
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416 self.assertEqual(0, c['Last']) |
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417 self.assertTrue(c['Done']) |
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418 |
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419 # Add 1 instance |
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420 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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421 c = DoGet(_REMOTE, '/changes') |
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422 begin = c['Last'] |
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423 self.assertEqual(4, len(c['Changes'])) |
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424 self.assertTrue(c['Done']) |
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425 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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426 |
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427 c = DoGet(_REMOTE, '/changes?last') |
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428 self.assertEqual(1, len(c['Changes'])) |
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429 self.assertEqual(begin, c['Last']) |
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430 self.assertTrue(c['Done']) |
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431 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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432 self.assertEqual(1, len(c['Changes'])) |
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433 self.assertEqual(begin, c['Last']) |
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434 self.assertTrue(c['Done']) |
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435 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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436 self.assertEqual(1, len(c['Changes'])) |
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437 self.assertEqual(begin - 1, c['Last']) |
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438 self.assertFalse(c['Done']) |
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439 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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440 self.assertEqual(1, len(c['Changes'])) |
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441 self.assertEqual(begin - 2, c['Last']) |
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442 self.assertFalse(c['Done']) |
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443 |
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444 UploadFolder(_REMOTE, 'Knee/T1') |
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445 UploadFolder(_REMOTE, 'Knee/T2') |
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446 since = begin |
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447 countPatients = 0 |
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448 countStudies = 0 |
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449 countSeries = 0 |
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450 countInstances = 0 |
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451 completed = 0 |
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452 while True: |
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453 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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454 since = c['Last'] |
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455 for i in c['Changes']: |
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456 if i['ResourceType'] == 'Instance': |
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457 countInstances += 1 |
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458 if i['ResourceType'] == 'Patient': |
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459 countPatients += 1 |
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460 if i['ResourceType'] == 'Study': |
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461 countStudies += 1 |
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462 if i['ResourceType'] == 'Series': |
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463 countSeries += 1 |
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464 if i['ChangeType'] == 'NewInstance': |
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465 countInstances += 1 |
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466 if i['ChangeType'] == 'NewPatient': |
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467 countPatients += 1 |
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468 if i['ChangeType'] == 'NewStudy': |
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469 countStudies += 1 |
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470 if i['ChangeType'] == 'NewSeries': |
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471 countSeries += 1 |
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472 if i['ChangeType'] == 'CompletedSeries': |
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473 completed += 1 |
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474 self.assertTrue('ID' in i) |
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475 self.assertTrue('Path' in i) |
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476 self.assertTrue('Seq' in i) |
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477 if c['Done']: |
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478 break |
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479 |
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480 self.assertEqual(2 * 50, countInstances) |
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481 self.assertEqual(2 * 1, countPatients) |
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482 self.assertEqual(2 * 1, countStudies) |
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483 self.assertEqual(2 * 2, countSeries) |
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484 self.assertEqual(0, completed) |
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485 |
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486 |
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487 def test_archive(self): |
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488 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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489 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 490 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 491 | |
| 492 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
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493 self.assertEqual(2, len(z.namelist())) |
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494 |
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495 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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496 self.assertEqual(2, len(z.namelist())) |
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497 |
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498 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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499 self.assertEqual(1, len(z.namelist())) |
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500 |
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501 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 502 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 503 | |
| 504 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
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505 self.assertEqual(2, len(z.namelist())) |
| 192 | 506 |
| 507 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 508 'Resources' : [ brainix, knee ] | |
| 509 }) | |
| 510 self.assertEqual(3, len(z.namelist())) | |
| 511 | |
|
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512 |
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513 def test_media_archive(self): |
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514 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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515 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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516 |
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517 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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518 self.assertEqual(3, len(z.namelist())) |
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519 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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520 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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521 self.assertTrue('DICOMDIR' in z.namelist()) |
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522 |
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523 try: |
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524 os.remove('/tmp/DICOMDIR') |
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525 except: |
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526 # The file does not exist |
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527 pass |
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528 |
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529 z.extract('DICOMDIR', '/tmp') |
| 45 | 530 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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531 stderr = subprocess.STDOUT).split('\n') |
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532 self.assertEqual(3, len(a)) |
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533 self.assertTrue(a[0].startswith('Warning')) |
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534 self.assertEqual('BasicDirectory', a[1]) |
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535 self.assertEqual('', a[2]) |
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536 |
| 45 | 537 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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538 stderr = subprocess.STDOUT).split('\n') |
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539 self.assertEqual(1, len(a)) |
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540 self.assertEqual('', a[0]) |
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541 |
| 45 | 542 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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543 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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544 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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545 |
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546 os.remove('/tmp/DICOMDIR') |
| 10 | 547 |
| 548 | |
| 549 def test_protection(self): | |
| 550 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 551 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 552 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 553 a = DoGet(_REMOTE, '/patients')[0] | |
| 554 b = DoGet(_REMOTE, '/patients')[1] | |
| 555 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 556 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 557 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 558 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 559 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 560 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 561 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 562 | |
| 563 | |
| 12 | 564 def test_raw_tags(self): |
| 10 | 565 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 566 | |
| 567 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 568 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 569 | |
| 570 s = '/instances/%s/content/' % i | |
| 571 | |
| 572 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 573 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 574 | |
| 575 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 576 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 577 | |
| 578 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 579 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 580 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 581 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 582 | |
| 583 for i in DoGet(_REMOTE, '/instances'): | |
| 584 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 585 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 586 | |
| 587 | |
| 588 def test_raw_tags_mdn(self): | |
| 589 # Bug reported by Cyril Paulus | |
| 590 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 591 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 592 | |
| 593 | |
| 594 def test_modify_instance(self): | |
| 595 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 596 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 597 json.dumps({ | |
| 598 "Replace" : { | |
| 599 "PatientName" : "hello", | |
| 600 #"PatientID" : "world" | |
| 601 }, | |
| 602 "Remove" : [ "StationName" ], | |
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603 "RemovePrivateTags" : True |
| 10 | 604 }), |
| 605 'application/json') | |
| 606 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 607 | |
| 608 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 609 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 610 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 611 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 612 | |
| 613 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 614 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 615 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 616 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 617 | |
| 618 | |
| 619 def test_modify_series(self): | |
| 620 # Upload 4 images from the same series | |
| 621 for i in range(4): | |
| 622 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 623 | |
| 624 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 625 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 626 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 627 'application/json')['ID'] | |
| 628 | |
| 629 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 630 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 631 self.assertEqual(4, len(instances)) | |
| 632 for i in instances: | |
| 633 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 634 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 635 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 636 | |
| 637 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 638 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 639 | |
| 640 | |
| 641 def test_modify_study(self): | |
| 642 # Upload 4 images from the 2 series of the same study | |
| 643 for i in range(4): | |
| 644 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 645 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 646 | |
| 647 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 648 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 649 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 650 'application/json')['ID'] | |
| 651 | |
| 652 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 653 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 654 self.assertEqual(2, len(series)) | |
| 655 for s in series: | |
| 656 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 657 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 658 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 659 | |
| 660 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 661 for i in instances: | |
| 662 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 663 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 664 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 665 | |
| 666 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 667 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 668 | |
| 669 | |
| 670 def test_anonymize_series(self): | |
| 671 # Upload 4 images from the same series | |
| 672 for i in range(4): | |
| 673 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 674 | |
| 675 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 676 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 677 '{}', | |
| 678 'application/json')['ID'] | |
| 679 | |
| 680 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 681 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 682 self.assertEqual(4, len(instances)) | |
| 683 for i in instances: | |
| 684 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 685 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 686 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 687 | |
| 688 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 689 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 690 | |
| 691 | |
| 692 def test_anonymize_study(self): | |
| 693 # Upload 4 images from the 2 series of the same study | |
| 694 for i in range(4): | |
| 695 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 696 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 697 | |
| 698 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 699 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 700 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 701 'application/json')['ID'] | |
| 702 | |
| 703 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 704 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 705 self.assertEqual(2, len(series)) | |
| 706 for s in series: | |
| 707 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 708 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 709 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 710 | |
| 711 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 712 for i in instances: | |
| 713 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 714 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 715 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 716 | |
| 717 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 718 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 719 |
| 720 | |
| 721 | |
| 722 def test_storescu(self): | |
| 723 # Check emptiness | |
| 724 e = DoGet(_REMOTE, '/exports') | |
| 725 self.assertEqual(0, len(e['Exports'])) | |
| 726 self.assertEqual(0, e['Last']) | |
| 727 self.assertTrue(e['Done']) | |
| 728 e = DoGet(_REMOTE, '/exports?last') | |
| 729 self.assertEqual(0, len(e['Exports'])) | |
| 730 self.assertEqual(0, e['Last']) | |
| 731 self.assertTrue(e['Done']) | |
| 732 | |
| 733 # Add 1 instance | |
| 734 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 735 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 736 | |
| 737 # Export the instance | |
| 738 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 739 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 740 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 741 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 742 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 743 | |
| 744 e = DoGet(_REMOTE, '/exports') | |
| 745 self.assertEqual(1, len(e['Exports'])) | |
| 746 self.assertTrue(e['Done']) | |
| 747 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 748 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 749 self.assertEqual(1, len(e['Exports'])) | |
| 750 self.assertTrue(e['Done']) | |
| 751 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 752 e = DoGet(_REMOTE, '/exports?last') | |
| 753 self.assertEqual(1, len(e['Exports'])) | |
| 754 self.assertTrue(e['Done']) | |
| 755 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 756 seqInstance = e['Last'] | |
| 757 | |
| 758 # Export the series | |
| 759 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 760 | |
| 761 e = DoGet(_REMOTE, '/exports') | |
| 762 self.assertEqual(2, len(e['Exports'])) | |
| 763 self.assertTrue(e['Done']) | |
| 764 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 765 seqSeries = e['Last'] | |
| 766 self.assertNotEqual(seqInstance, seqSeries) | |
| 767 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 768 self.assertEqual(1, len(e['Exports'])) | |
| 769 self.assertFalse(e['Done']) | |
| 770 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 771 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 772 self.assertEqual(1, len(e['Exports'])) | |
| 773 self.assertTrue(e['Done']) | |
| 774 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 775 e = DoGet(_REMOTE, '/exports?last') | |
| 776 self.assertEqual(1, len(e['Exports'])) | |
| 777 self.assertTrue(e['Done']) | |
| 778 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 779 | |
| 780 # Export the study | |
| 781 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 782 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 783 | |
| 784 # Export the patient | |
| 785 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 786 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 787 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 788 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 789 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 790 | |
| 791 e = DoGet(_REMOTE, '/exports') | |
| 792 self.assertEqual(4, len(e['Exports'])) | |
| 793 self.assertTrue(e['Done']) | |
| 794 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 795 seqPatient = e['Last'] | |
| 796 self.assertNotEqual(seqInstance, seqSeries) | |
| 797 self.assertNotEqual(seqSeries, seqStudy) | |
| 798 self.assertNotEqual(seqStudy, seqPatient) | |
| 799 self.assertTrue(seqInstance < seqSeries) | |
| 800 self.assertTrue(seqSeries < seqStudy) | |
| 801 self.assertTrue(seqStudy < seqPatient) | |
| 802 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 803 self.assertEqual(1, len(e['Exports'])) | |
| 804 self.assertFalse(e['Done']) | |
| 805 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 806 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 807 self.assertEqual(1, len(e['Exports'])) | |
| 808 self.assertFalse(e['Done']) | |
| 809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 810 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 811 self.assertEqual(1, len(e['Exports'])) | |
| 812 self.assertFalse(e['Done']) | |
| 813 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 814 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 815 self.assertEqual(1, len(e['Exports'])) | |
| 816 self.assertTrue(e['Done']) | |
| 817 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 818 e = DoGet(_REMOTE, '/exports?last') | |
| 819 self.assertEqual(1, len(e['Exports'])) | |
| 820 self.assertTrue(e['Done']) | |
| 821 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 822 | |
| 823 | |
| 824 # Check the content of the logged information | |
| 825 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 826 | |
| 827 if 'PatientID' in e[0]: | |
| 828 # Since Orthanc 0.8.6 | |
| 829 patient = 'PatientID' | |
| 830 study = 'StudyInstanceUID' | |
| 831 series = 'SeriesInstanceUID' | |
| 832 instance = 'SOPInstanceUID' | |
| 833 else: | |
| 834 # Up to Orthanc 0.8.5 | |
| 835 patient = 'PatientId' | |
| 836 study = 'StudyInstanceUid' | |
| 837 series = 'SeriesInstanceUid' | |
| 838 instance = 'SopInstanceUid' | |
| 839 | |
| 840 for k in range(4): | |
| 841 self.assertTrue('Date' in e[k]) | |
| 842 self.assertTrue('Seq' in e[k]) | |
| 843 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 844 | |
| 845 self.assertEqual(10, len(e[0])) | |
| 846 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 847 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 848 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 849 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 850 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 851 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 852 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 853 | |
| 854 self.assertEqual(9, len(e[1])) | |
| 855 self.assertEqual('Series', e[1]['ResourceType']) | |
| 856 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 857 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 858 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 859 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 860 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 861 | |
| 862 self.assertEqual(8, len(e[2])) | |
| 863 self.assertEqual('Study', e[2]['ResourceType']) | |
| 864 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 865 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 866 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 867 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 868 | |
| 869 self.assertEqual(7, len(e[3])) | |
| 870 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 871 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 872 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 873 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 874 | |
| 875 DropOrthanc(_REMOTE) | |
| 876 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 877 | |
| 878 | |
| 879 def test_store_peer(self): | |
| 880 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 881 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 882 | |
| 883 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 884 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 885 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 886 | |
| 887 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 888 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 889 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 890 | |
| 891 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 892 | |
| 893 DropOrthanc(_REMOTE) | |
| 894 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 895 | |
| 896 | |
| 897 def test_bulk_storescu(self): | |
| 898 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 899 | |
| 900 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 901 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 902 | |
| 903 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 904 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 905 | |
| 906 DropOrthanc(_LOCAL) | |
| 907 | |
| 908 # Send using patient's UUID | |
| 909 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 910 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 911 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 912 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 913 | |
| 914 | |
| 915 def test_color(self): | |
| 916 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 917 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 918 self.assertEqual("RGB", im.mode) | |
| 919 self.assertEqual(41, im.size[0]) | |
| 920 self.assertEqual(41, im.size[1]) | |
| 921 | |
| 922 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 923 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 924 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 925 | |
| 926 | |
| 12 | 927 def test_faking_ruby_put(self): |
| 928 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 929 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 930 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 931 a = DoGet(_REMOTE, '/patients')[0] | |
| 932 b = DoGet(_REMOTE, '/patients')[1] | |
| 933 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 934 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 935 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 936 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 937 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 938 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 939 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 940 | |
| 941 | |
| 942 def test_faking_ruby_delete(self): | |
| 943 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 944 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 945 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 946 a = DoGet(_REMOTE, '/patients')[0] | |
| 947 b = DoGet(_REMOTE, '/patients')[1] | |
| 948 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 949 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 950 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 951 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 952 | |
| 953 | |
| 954 def test_faking_google_put(self): | |
| 955 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 956 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 957 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 958 a = DoGet(_REMOTE, '/patients')[0] | |
| 959 b = DoGet(_REMOTE, '/patients')[1] | |
| 960 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 961 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 962 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 963 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 964 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 965 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 967 | |
| 968 | |
| 969 def test_faking_google_delete(self): | |
| 970 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 971 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 972 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 973 a = DoGet(_REMOTE, '/patients')[0] | |
| 974 b = DoGet(_REMOTE, '/patients')[1] | |
| 975 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 976 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 977 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 978 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 979 | |
| 980 | |
| 981 def test_lua(self): | |
| 982 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 983 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 984 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 985 | |
| 986 | |
| 987 def test_metadata(self): | |
| 988 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 989 p = DoGet(_REMOTE, '/patients')[0] | |
| 990 i = DoGet(_REMOTE, '/instances')[0] | |
| 991 | |
| 992 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 993 self.assertEqual(1, len(m)) | |
| 994 self.assertEqual('LastUpdate', m[0]) | |
| 995 | |
| 996 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 145 | 997 self.assertEqual(8, len(m)) |
| 12 | 998 self.assertTrue('IndexInSeries' in m) |
| 999 self.assertTrue('ReceptionDate' in m) | |
| 1000 self.assertTrue('RemoteAET' in m) | |
|
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1001 self.assertTrue('Origin' in m) |
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1002 self.assertTrue('TransferSyntax' in m) |
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testing of metadata SopClassUid
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1003 self.assertTrue('SopClassUid' in m) |
| 145 | 1004 self.assertTrue('RemoteIP' in m) |
| 1005 self.assertTrue('HttpUsername' in m) | |
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1006 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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test Origin metadata of instances
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1007 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1008 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1009 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1010 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1011 |
| 1012 # Play with custom metadata | |
| 1013 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1014 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1015 self.assertEqual(2, len(m)) | |
| 1016 self.assertTrue('LastUpdate' in m) | |
| 1017 self.assertTrue('5555' in m) | |
| 1018 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1019 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1020 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1021 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1022 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1023 self.assertEqual(1, len(m)) | |
| 1024 self.assertTrue('LastUpdate' in m) | |
| 13 | 1025 |
| 1026 | |
| 1027 def test_statistics(self): | |
| 1028 # Upload 16 instances | |
| 1029 for i in range(4): | |
| 1030 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1031 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1032 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1033 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1034 | |
| 1035 s = DoGet(_REMOTE, '/statistics') | |
| 1036 self.assertEqual(16, s['CountInstances']) | |
| 1037 self.assertEqual(2, s['CountPatients']) | |
| 1038 self.assertEqual(2, s['CountStudies']) | |
| 1039 self.assertEqual(4, s['CountSeries']) | |
| 1040 d = int(s['TotalUncompressedSize']) | |
| 1041 | |
| 1042 e = 0 | |
| 1043 for patient in DoGet(_REMOTE, '/patients'): | |
| 1044 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1045 self.assertEqual(8, s['CountInstances']) | |
| 1046 self.assertEqual(1, s['CountStudies']) | |
| 1047 self.assertEqual(2, s['CountSeries']) | |
| 1048 e += int(s['UncompressedSize']) | |
| 1049 | |
| 1050 for study in DoGet(_REMOTE, '/studies'): | |
| 1051 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1052 self.assertEqual(8, s['CountInstances']) | |
| 1053 self.assertEqual(2, s['CountSeries']) | |
| 1054 e += int(s['UncompressedSize']) | |
| 1055 | |
| 1056 for series in DoGet(_REMOTE, '/series'): | |
| 1057 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1058 self.assertEqual(4, s['CountInstances']) | |
| 1059 e += int(s['UncompressedSize']) | |
| 1060 | |
| 1061 self.assertEqual(3 * d, e) | |
| 1062 | |
| 1063 | |
| 1064 def test_custom_attachment(self): | |
| 1065 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1066 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1067 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1068 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1069 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1070 | |
| 1071 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1072 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1073 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1074 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1075 | |
| 1076 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1077 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1078 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1079 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1080 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1081 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1082 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1083 | |
| 1084 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1085 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1086 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1087 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1088 size + | |
| 1089 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1090 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1091 | |
| 1092 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1093 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1094 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1095 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1096 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1097 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1098 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1099 | |
| 1100 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1101 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1102 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1103 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1104 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1105 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1106 | |
| 1107 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1108 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1109 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1110 | |
| 1111 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1112 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1113 | |
| 1114 | |
| 1115 def test_incoming_storescu(self): | |
| 1116 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1117 subprocess.check_call([ FindExecutable('storescu'), |
|
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1118 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1119 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1120 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1121 | |
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1122 i = DoGet(_REMOTE, '/instances') |
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1123 self.assertEqual(1, len(i)) |
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1124 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1125 self.assertEqual(8, len(m)) |
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1126 self.assertTrue('IndexInSeries' in m) |
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1127 self.assertTrue('ReceptionDate' in m) |
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1128 self.assertTrue('RemoteAET' in m) |
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1129 self.assertTrue('Origin' in m) |
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1130 self.assertTrue('TransferSyntax' in m) |
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1131 self.assertTrue('SopClassUid' in m) |
| 145 | 1132 self.assertTrue('RemoteIP' in m) |
| 1133 self.assertTrue('CalledAET' in m) | |
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1134 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1135 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1136 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1137 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1138 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1139 |
| 13 | 1140 |
| 1141 def test_incoming_findscu(self): | |
| 1142 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1143 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1144 | |
| 1145 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1146 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1147 self.assertEqual(2, len(patientNames)) | |
| 1148 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1149 self.assertTrue('Anonymized' in patientNames) | |
| 1150 | |
| 1151 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1152 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1153 self.assertEqual(2, len(series)) | |
| 1154 self.assertTrue('20070208' in series) | |
| 1155 self.assertTrue('19980312' in series) | |
| 1156 | |
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1157 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1158 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1159 self.assertEqual(1, len(series)) |
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1160 self.assertTrue('19980312' in series) |
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1161 |
| 13 | 1162 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1163 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1164 self.assertEqual(1, len(series)) | |
| 1165 | |
| 1166 # Test the "CaseSentitivePN" flag (false by default) | |
| 1167 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1168 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1169 self.assertEqual(1, len(series)) | |
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1170 |
| 70 | 1171 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1172 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1173 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1174 self.assertEqual(2, len(studies)) | |
| 1175 self.assertTrue('20070208' in studies) | |
| 1176 self.assertTrue('19980312' in studies) | |
| 1177 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1178 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1179 self.assertEqual(1, len(studies)) | |
| 1180 self.assertTrue('19980312' in studies) | |
| 1181 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1182 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1183 self.assertEqual(1, len(studies)) | |
| 1184 self.assertTrue('19980312' in studies) | |
| 13 | 1185 |
| 1186 | |
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1187 def test_incoming_findscu_2(self): |
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1188 # This test fails if "LookupMode_DatabaseOnly" is used |
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1189 # (sequences are not available in this mode, and only main |
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1190 # DICOM tags are returned) |
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1191 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1192 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1193 |
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1194 # Test returning sequence values (only since Orthanc 0.9.5) |
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1195 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1196 sequences = re.findall('\(0008,2112\)', i) |
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1197 self.assertEqual(1, len(sequences)) |
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1198 |
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1199 # Test returning a non-main DICOM tag, |
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1200 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1201 # "MEDPC" in "ColorTestImageJ.dcm" |
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1202 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1203 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1204 self.assertEqual(1, len(tags)) |
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1205 |
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1206 |
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1207 def test_incoming_findscu_3(self): |
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1208 # This test fails if "LookupMode_DatabaseOnly" or |
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1209 # "LookupMode_DiskOnAnswer" is used, as |
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1210 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1211 # tag, as thus a constraint cannot be applied to it |
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1212 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1213 |
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1214 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1215 sequences = re.findall('\(0018,1010\)', i) |
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1216 self.assertEqual(1, len(sequences)) |
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1217 |
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1218 |
| 13 | 1219 def test_incoming_movescu(self): |
| 1220 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
|
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1221 |
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1222 # No matching patient, so no job is created |
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1223 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1224 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1225 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
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1227 # 1 Matching patient, track the job |
| 138 | 1228 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1229 '--patient', | |
| 1230 '-k', '0008,0052=PATIENT', | |
| 1231 '-k', 'PatientID=12345678' | |
| 1232 ]))) | |
| 13 | 1233 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1234 | |
| 1235 | |
| 1236 def test_findscu(self): | |
| 1237 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1238 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1239 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1240 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1241 | |
| 1242 # Test the "find-patient" level | |
| 1243 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1244 self.assertEqual(1, len(p)) | |
| 1245 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1246 | |
| 1247 # Test wildcards constraints. The "LO" value representation | |
| 1248 # for PatientID is always case-sensitive, but the "PN" for | |
| 1249 # PatientName might depend on the implementation: | |
| 1250 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1251 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1252 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1253 self.assertEqual(1, len(p)) | |
| 1254 | |
| 1255 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1256 self.assertEqual(1, len(p)) | |
| 1257 | |
| 1258 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1259 self.assertEqual(1, len(p)) | |
| 1260 | |
| 1261 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1262 self.assertEqual(1, len(p)) | |
| 1263 | |
| 1264 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1265 self.assertEqual(0, len(p)) | |
| 1266 | |
| 1267 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1268 self.assertEqual(0, len(p)) | |
| 1269 | |
| 1270 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1271 self.assertEqual(0, len(p)) | |
| 1272 | |
| 1273 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1274 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1275 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1276 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1277 | |
| 1278 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1279 self.assertEqual(2, len(p)) | |
| 1280 | |
| 1281 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1282 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1283 self.assertEqual(1, len(s)) | |
| 1284 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1285 | |
| 1286 # Test range searches | |
| 1287 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1288 'StudyDate' : '-20070101' }) | |
| 1289 self.assertEqual(0, len(t)) | |
| 1290 | |
| 1291 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1292 'StudyDate' : '20090101-' }) | |
| 1293 self.assertEqual(0, len(t)) | |
| 1294 | |
| 1295 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1296 'StudyDate' : '20070101-' }) | |
| 1297 self.assertEqual(1, len(t)) | |
| 1298 | |
| 1299 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1300 'StudyDate' : '-20090101' }) | |
| 1301 self.assertEqual(1, len(t)) | |
| 1302 | |
| 1303 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1304 'StudyDate' : '20070207-20070207' }) | |
| 1305 self.assertEqual(0, len(t)) | |
| 1306 | |
| 1307 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1308 'StudyDate' : '20070208-20070208' }) | |
| 1309 self.assertEqual(1, len(t)) | |
| 1310 | |
| 1311 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1312 'StudyDate' : '20070209-20070209' }) | |
| 1313 self.assertEqual(0, len(t)) | |
| 1314 | |
| 1315 # Test the ModalitiesInStudy tag | |
| 1316 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1317 'PatientID' : 'B9uTHKOZ', | |
| 1318 'ModalitiesInStudy' : 'US' }) | |
| 1319 self.assertEqual(0, len(t)) | |
| 1320 | |
| 1321 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1322 'PatientID' : 'B9uTHKOZ', | |
| 1323 'ModalitiesInStudy' : 'CT' }) | |
| 1324 self.assertEqual(1, len(t)) | |
| 1325 | |
| 1326 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1327 'PatientID' : 'B9uTHKOZ', | |
| 1328 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1329 self.assertEqual(1, len(t)) | |
| 1330 | |
| 1331 # Test the "find-series" level | |
| 1332 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1333 'PatientID' : 'B9uTHKOZ', | |
| 1334 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1335 self.assertEqual(1, len(t)) | |
| 1336 | |
| 1337 # Test "\" separator | |
| 1338 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1339 'PatientID' : 'B9uTHKOZ', | |
| 1340 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1341 'Modality' : 'MR\\CT\\US' }) | |
| 1342 self.assertEqual(1, len(t)) | |
| 1343 | |
| 1344 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1345 'PatientID' : 'B9uTHKOZ', | |
| 1346 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1347 'Modality' : 'MR\\US' }) | |
| 1348 self.assertEqual(0, len(t)) | |
| 1349 | |
| 1350 | |
| 1351 def test_update_modalities(self): | |
| 1352 try: | |
| 1353 DoDelete(_REMOTE, '/modalities/toto') | |
| 1354 except: | |
| 1355 pass | |
| 1356 try: | |
| 1357 DoDelete(_REMOTE, '/modalities/tata') | |
| 1358 except: | |
| 1359 pass | |
| 1360 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1361 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1362 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1363 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1364 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1365 DoDelete(_REMOTE, '/modalities/tata') |
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1366 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1367 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1368 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1369 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1370 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1371 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1372 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1373 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1374 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1375 DoDelete(_REMOTE, '/modalities/toto') | |
| 1376 DoDelete(_REMOTE, '/modalities/tata') | |
| 1377 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1378 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1379 | |
| 1380 | |
| 1381 def test_update_peers(self): | |
| 1382 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1383 try: | |
| 1384 DoDelete(_REMOTE, '/peers/toto') | |
| 1385 except: | |
| 1386 pass | |
| 1387 try: | |
| 1388 DoDelete(_REMOTE, '/peers/tata') | |
| 1389 except: | |
| 1390 pass | |
| 1391 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1392 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1393 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 128 | 1394 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1395 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1396 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1397 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 1398 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1399 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1400 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1401 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1402 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 13 | 1403 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1404 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1405 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1406 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1407 DoDelete(_REMOTE, '/peers/toto') | |
| 1408 DoDelete(_REMOTE, '/peers/tata') | |
| 1409 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1410 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1411 | |
| 1412 | |
| 1413 def test_mesterhazy_modification(self): | |
| 1414 # When I modify a series ( eg. curl | |
| 1415 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1416 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1417 # series is added to a new Study, instead of the existing | |
| 1418 # Study. Fixed in Orthanc 0.7.5 | |
| 1419 | |
| 1420 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1421 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1422 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1423 | |
| 1424 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1425 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1426 | |
| 1427 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1428 | |
| 1429 | |
| 1430 def test_create(self): | |
| 1431 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1432 json.dumps({ | |
| 1433 'PatientName' : 'Jodogne', | |
| 1434 'Modality' : 'CT', | |
| 58 | 1435 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1436 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1437 })) | |
| 1438 | |
| 1439 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1440 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1441 | |
| 1442 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1443 self.assertEqual((5, 5), png.size) | |
| 1444 | |
| 38 | 1445 j = DoGet(_REMOTE, i['Path']) |
| 1446 self.assertEqual('Instance', j['Type']) | |
| 1447 self.assertEqual(j['ID'], i['ID']) | |
| 1448 | |
| 13 | 1449 |
| 1450 def test_pilates(self): | |
| 1451 # "SCU failed error when accessing orthanc with osirix" by | |
| 1452 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1453 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1454 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1455 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1456 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1457 | |
| 1458 | |
| 1459 def test_shared_tags(self): | |
| 1460 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1461 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1462 p = DoGet(_REMOTE, '/patients')[0] | |
| 1463 | |
| 1464 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1465 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1466 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1467 |
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1468 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1469 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1470 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1471 |
| 13 | 1472 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1473 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1474 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1475 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1476 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1477 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1478 | |
| 1479 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1480 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1481 | |
| 1482 | |
| 1483 def test_modules(self): | |
| 1484 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1485 p = DoGet(_REMOTE, '/patients')[0] | |
| 1486 s = DoGet(_REMOTE, '/studies')[0] | |
| 1487 t = DoGet(_REMOTE, '/series')[0] | |
| 1488 | |
| 1489 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1490 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1491 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1492 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1493 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1494 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1495 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1496 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1497 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1498 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1499 | |
| 1500 | |
| 1501 def test_auto_directory(self): | |
| 1502 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1503 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1504 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1505 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1506 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1507 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1508 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1509 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1510 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1511 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1512 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1513 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1514 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1515 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1516 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1517 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1518 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1519 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1520 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1521 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1522 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1523 |
| 1524 | |
| 1525 def test_echo(self): | |
| 1526 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1527 | |
| 1528 | |
| 1529 def test_xml(self): | |
| 1530 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1531 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1532 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1533 self.assertEqual(len(items), len(json)) | |
| 1534 | |
| 1535 self.assertTrue('dicom-conformance' in json) | |
| 1536 | |
| 1537 ok = False | |
| 1538 for i in items: | |
| 1539 if i.childNodes[0].data == 'dicom-conformance': | |
| 1540 ok = True | |
| 1541 self.assertTrue(ok) | |
| 1542 | |
| 1543 | |
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1544 def test_googlecode_issue_16(self): |
| 13 | 1545 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1546 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1547 self.assertEqual('0018,1063', t) | |
| 1548 | |
| 1549 | |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1550 def test_googlecode_issue_22(self): |
| 13 | 1551 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1552 a = [ | |
| 1553 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1554 "c69eee9a51eea3e8611e82e578897254", | |
| 1555 "315666be83e2d0111c77bc0996d84901", | |
| 1556 "3e27aa959d911172c48a1436443c72b1", | |
| 1557 "958642c9e7e9d232d3869faff546058c", | |
| 1558 "5e7ea8e3e4230cae707d143481355c59", | |
| 1559 "eda37f83558d858a596175aed8b2ad47", | |
| 1560 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1561 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1562 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1563 "e2f39e85896fe58876654b94cd0b5013", | |
| 1564 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1565 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1566 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1567 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1568 "806b8b3e300c615099c11a5ec23465aa", | |
| 1569 "7c836aa298ba6eef96434579af631a11", | |
| 1570 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1571 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1572 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1573 "44e6670f127e612a2b4aa60a0d207698", | |
| 1574 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1575 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1576 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1577 ] | |
| 1578 | |
| 1579 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1580 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1581 | |
| 1582 for i in range(len(a)): | |
| 1583 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1584 | |
| 1585 | |
|
46
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explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1586 def test_googlecode_issue_19(self): |
|
21
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1587 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1588 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1589 | |
| 1590 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
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tests of image decoding
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parents:
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diff
changeset
|
1591 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1592 |
| 1593 | |
|
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explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1594 def test_googlecode_issue_37(self): |
| 13 | 1595 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1596 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1597 | |
| 1598 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1599 'CaseSensitive' : True, | |
| 1600 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1601 self.assertEqual(1, len(a)) | |
| 14 | 1602 |
| 1603 | |
| 1604 def test_rest_find(self): | |
| 1605 # Upload 8 instances | |
| 1606 for i in range(2): | |
| 1607 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1608 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1609 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1610 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1611 | |
| 1612 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1613 'CaseSensitive' : False, | |
| 1614 'Query' : { 'PatientName' : '*n*' }}) | |
| 1615 self.assertEqual(2, len(a)) | |
| 1616 | |
| 1617 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1618 'CaseSensitive' : True, | |
| 1619 'Query' : { 'PatientName' : '*n*' }}) | |
| 1620 self.assertEqual(0, len(a)) | |
| 1621 | |
| 1622 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1623 'Level' : 'Patient', | |
| 1624 'CaseSensitive' : False, | |
| 1625 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1626 self.assertEqual(1, len(a)) | |
| 1627 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1628 | |
| 1629 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1630 'CaseSensitive' : True, | |
| 1631 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1632 self.assertEqual(0, len(a)) | |
| 1633 | |
| 1634 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1635 'CaseSensitive' : True, | |
| 1636 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1637 self.assertEqual(1, len(a)) | |
| 1638 | |
| 1639 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1640 'CaseSensitive' : True, | |
| 1641 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1642 self.assertEqual(2, len(a)) | |
| 1643 | |
| 1644 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1645 'CaseSensitive' : True, | |
| 1646 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1647 self.assertEqual(4, len(a)) | |
| 1648 | |
| 1649 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1650 self.assertEqual(2, len(a)) | |
| 1651 | |
| 1652 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1653 self.assertEqual(2, len(a)) | |
| 1654 | |
| 1655 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1656 self.assertEqual(4, len(a)) | |
| 1657 | |
| 1658 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1659 self.assertEqual(8, len(a)) | |
| 1660 | |
| 1661 | |
| 1662 def test_rest_query_retrieve(self): | |
| 1663 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1664 | |
| 1665 # Upload 8 instances | |
| 1666 for i in range(2): | |
| 1667 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1668 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1669 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1670 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1671 | |
| 1672 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1673 for p in DoGet(_REMOTE, '/patients'): | |
| 1674 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1675 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1676 | |
| 1677 for q in DoGet(_REMOTE, '/queries'): | |
| 1678 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1679 | |
| 1680 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1681 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1682 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1683 'Query' : { |
| 1684 'PatientName' : '*NE*', | |
| 1685 'StudyDate' : '*', | |
| 1686 }})['ID'] | |
| 14 | 1687 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1688 | |
| 1689 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1690 self.assertTrue('answers' in b) | |
| 1691 self.assertTrue('level' in b) | |
| 1692 self.assertTrue('modality' in b) | |
| 1693 self.assertTrue('query' in b) | |
| 1694 self.assertTrue('retrieve' in b) | |
| 1695 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1696 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1697 | |
| 1698 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1699 self.assertEqual(2, len(q)) |
| 14 | 1700 self.assertTrue('PatientName' in q) |
| 27 | 1701 self.assertTrue('StudyDate' in q) |
| 14 | 1702 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1703 self.assertEqual('*', q['StudyDate']) |
| 14 | 1704 |
| 1705 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1706 | |
| 1707 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1708 self.assertTrue('content' in s) | |
| 1709 self.assertTrue('retrieve' in s) | |
| 1710 | |
| 1711 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1712 self.assertEqual('887', s['PatientID']) | |
| 1713 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1714 | |
| 1715 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1716 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1717 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1718 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1719 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1720 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1721 | |
| 112 | 1722 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1723 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1724 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1725 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1726 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1727 | |
|
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parents:
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changeset
|
1728 # New in Orthanc 1.4.3 |
|
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parents:
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|
1729 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
|
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parents:
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diff
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|
1730 self.assertEqual(2, len(s)) |
|
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parents:
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1731 for i in range(2): |
|
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|
1732 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
|
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parents:
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|
1733 self.assertEqual('887', s[i]['PatientID']) |
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parents:
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|
1734 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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parents:
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|
1735 |
| 14 | 1736 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1737 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1738 | |
| 1739 | |
| 1740 def test_parent(self): | |
| 1741 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1742 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1743 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1744 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1745 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
1746 self.assertEqual(instance, u) |
| 14 | 1747 |
| 1748 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1749 self.assertEqual('Patient', a['Type']) | |
| 1750 self.assertEqual(patient, a['ID']) | |
| 1751 | |
| 1752 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1753 self.assertEqual('Patient', a['Type']) | |
| 1754 self.assertEqual(patient, a['ID']) | |
| 1755 | |
| 1756 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1757 self.assertEqual('Study', a['Type']) | |
| 1758 self.assertEqual(study, a['ID']) | |
| 1759 | |
| 1760 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1761 self.assertEqual('Patient', a['Type']) | |
| 1762 self.assertEqual(patient, a['ID']) | |
| 1763 | |
| 1764 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1765 self.assertEqual('Study', a['Type']) | |
| 1766 self.assertEqual(study, a['ID']) | |
| 1767 | |
| 1768 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1769 self.assertEqual('Series', a['Type']) | |
| 1770 self.assertEqual(series, a['ID']) | |
| 1771 | |
| 1772 | |
| 1773 def test_shanon(self): | |
| 1774 def Anonymize(instance, replacements = {}): | |
| 119 | 1775 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1776 'Replace' : replacements, | |
| 1777 'Force' : True, | |
| 1778 }, 'application/json') | |
| 14 | 1779 |
| 1780 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1781 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1782 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1783 | |
| 1784 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1785 ids = [ 'ozp00SjY2xG', | |
| 1786 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1787 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1788 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1789 | |
| 1790 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1791 for i in range(4): | |
| 1792 self.assertNotEqual(ids[i], a[i]) | |
| 1793 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1794 | |
| 1795 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1796 for i in range(4): | |
| 1797 self.assertNotEqual(ids[i], a[i]) | |
| 1798 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1799 | |
| 1800 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1801 self.assertEqual('instance', a[3]) | |
| 1802 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1803 | |
| 1804 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1805 self.assertEqual('series', a[2]) | |
| 1806 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1807 | |
| 1808 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1809 self.assertEqual('study', a[1]) | |
| 1810 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1811 | |
| 1812 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1813 self.assertEqual('patient', a[0]) | |
| 1814 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1815 | |
| 1816 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1817 'StudyInstanceUID' : 'study', | |
| 1818 'SeriesInstanceUID' : 'series', | |
| 1819 'SOPInstanceUID' : 'instance' }), tags) | |
| 1820 self.assertEqual('patient', a[0]) | |
| 1821 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1822 | |
| 1823 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1824 | |
| 1825 | |
| 1826 def test_shanon_2(self): | |
| 1827 def Modify(instance, replacements = {}): | |
| 119 | 1828 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1829 'Replace' : replacements, | |
| 1830 'Force': True, | |
| 1831 }, 'application/json') | |
| 14 | 1832 |
| 1833 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1834 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1835 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1836 | |
| 1837 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1838 ids = [ 'ozp00SjY2xG', | |
| 1839 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1840 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1841 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1842 | |
| 1843 a = ExtractDicomTags(Modify(u), tags) | |
| 1844 self.assertEqual(ids[0], a[0]) | |
| 1845 self.assertEqual(ids[1], a[1]) | |
| 1846 self.assertEqual(ids[2], a[2]) | |
| 1847 self.assertNotEqual(ids[3], a[3]) | |
| 1848 self.assertEqual(0, len(a[4])) | |
| 1849 | |
| 1850 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1851 self.assertEqual(ids[0], a[0]) | |
| 1852 self.assertEqual(ids[1], a[1]) | |
| 1853 self.assertEqual(ids[2], a[2]) | |
| 1854 self.assertEqual('instance', a[3]) | |
| 1855 | |
| 1856 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1857 self.assertEqual(ids[0], a[0]) | |
| 1858 self.assertEqual(ids[1], a[1]) | |
| 1859 self.assertEqual('series', a[2]) | |
| 1860 self.assertNotEqual(ids[3], a[3]) | |
| 1861 | |
| 1862 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1863 self.assertEqual(ids[0], a[0]) | |
| 1864 self.assertEqual('study', a[1]) | |
| 1865 self.assertNotEqual(ids[2], a[2]) | |
| 1866 self.assertNotEqual(ids[3], a[3]) | |
| 1867 | |
| 1868 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1869 self.assertEqual('patient', a[0]) | |
| 1870 self.assertNotEqual(ids[1], a[1]) | |
| 1871 self.assertNotEqual(ids[2], a[2]) | |
| 1872 self.assertNotEqual(ids[3], a[3]) | |
| 1873 | |
| 1874 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1875 'StudyInstanceUID' : 'study', | |
| 1876 'SeriesInstanceUID' : 'series', | |
| 1877 'SOPInstanceUID' : 'instance' }), tags) | |
| 1878 self.assertEqual('patient', a[0]) | |
| 1879 self.assertEqual('study', a[1]) | |
| 1880 self.assertEqual('series', a[2]) | |
| 1881 self.assertEqual('instance', a[3]) | |
| 1882 | |
| 1883 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1884 | |
| 1885 | |
| 1886 def test_instances_tags(self): | |
| 1887 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1888 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1889 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1890 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1891 | |
| 1892 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1893 self.assertEqual(2, len(i)) | |
| 1894 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1895 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1896 | |
| 1897 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1898 self.assertEqual(2, len(i)) | |
| 1899 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1900 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1901 | |
| 1902 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1903 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1904 self.assertEqual(1, len(i)) | |
| 1905 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1906 | |
| 1907 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1908 self.assertEqual(1, len(i)) | |
| 1909 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1910 | |
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1911 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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1912 self.assertEqual(1, len(i)) |
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1913 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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1914 |
| 14 | 1915 |
| 1916 def test_lookup(self): | |
| 1917 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1918 self.assertEqual(0, len(a)) | |
| 1919 | |
| 1920 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1921 | |
| 1922 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1923 self.assertEqual(1, len(a)) | |
| 1924 self.assertEqual('Patient', a[0]['Type']) | |
| 1925 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1926 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1927 | |
| 1928 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1929 self.assertEqual(1, len(a)) | |
| 1930 self.assertEqual('Study', a[0]['Type']) | |
| 1931 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1932 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1933 | |
| 1934 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1935 self.assertEqual(1, len(a)) | |
| 1936 self.assertEqual('Series', a[0]['Type']) | |
| 1937 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 1938 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 1939 | |
| 1940 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 1941 self.assertEqual(1, len(a)) | |
| 1942 self.assertEqual('Instance', a[0]['Type']) | |
| 1943 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 1944 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 1945 | |
| 1946 DropOrthanc(_REMOTE) | |
| 1947 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 1948 self.assertEqual(0, len(a)) | |
| 1949 | |
| 15 | 1950 |
| 1951 def test_autorouting(self): | |
| 1952 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 1953 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 1954 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 1955 | |
| 1956 # Check that this version is >= 0.8.0 | |
| 1957 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 1958 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1959 | |
| 1960 UploadInstance(_REMOTE, knee1) | |
| 1961 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 1962 | |
| 1963 DropOrthanc(_REMOTE) | |
| 1964 DropOrthanc(_LOCAL) | |
| 174 | 1965 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 1966 UploadInstance(_REMOTE, knee1) |
| 1967 UploadInstance(_REMOTE, knee2) | |
| 1968 UploadInstance(_REMOTE, other) | |
| 1969 WaitEmpty(_REMOTE) | |
| 174 | 1970 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1971 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 1972 | |
| 1973 DropOrthanc(_REMOTE) | |
| 1974 DropOrthanc(_LOCAL) | |
| 174 | 1975 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 1976 UploadInstance(_REMOTE, knee1) |
| 1977 UploadInstance(_REMOTE, knee2) | |
| 1978 UploadInstance(_REMOTE, other) | |
| 1979 WaitEmpty(_REMOTE) | |
| 174 | 1980 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1981 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 1982 | |
| 1983 DropOrthanc(_REMOTE) | |
| 1984 DropOrthanc(_LOCAL) | |
| 174 | 1985 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 1986 UploadInstance(_REMOTE, knee1) |
| 1987 WaitEmpty(_REMOTE) | |
| 174 | 1988 UninstallLuaCallbacks(_REMOTE) |
| 15 | 1989 i = DoGet(_LOCAL, '/instances') |
| 1990 self.assertEqual(1, len(i)) | |
| 1991 | |
| 1992 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 1993 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 1994 f.flush() | |
| 45 | 1995 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 1996 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 1997 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 1998 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 1999 |
| 2000 | |
| 2001 def test_storescu_rf(self): | |
| 2002 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2003 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2004 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2005 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2006 |
| 2007 | |
| 2008 def test_anonymize_instance(self): | |
| 2009 def AnonymizeAndUpload(instanceId, parameters): | |
| 2010 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2011 'application/json'), 'application/dicom')['ID'] | |
| 2012 | |
| 2013 def ModifyAndUpload(instanceId, parameters): | |
| 2014 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2015 'application/json'), 'application/dicom')['ID'] | |
| 2016 | |
| 2017 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2018 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2019 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2020 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2021 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2022 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2023 | |
| 2024 b = AnonymizeAndUpload(a, '{}') | |
| 2025 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2026 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2027 | |
| 2028 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2029 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2030 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2031 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2032 | |
| 2033 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2034 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2035 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2036 | |
| 2037 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2038 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2039 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2040 | |
| 2041 # Examples from the Wiki | |
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2042 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2043 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2044 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2045 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2046 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2047 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2048 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2049 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2050 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2051 | |
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2052 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2053 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2054 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2055 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2056 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2057 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2058 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2059 | |
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2060 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2061 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2062 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2063 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2064 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2065 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2066 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2067 | |
| 2068 | |
| 2069 # Test modify non-existing | |
| 2070 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2071 json.dumps({ | |
| 2072 'PatientName' : 'Jodogne', | |
| 2073 'Modality' : 'CT', | |
| 2074 }))['ID'] | |
| 2075 | |
| 2076 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2077 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2078 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2079 | |
| 2080 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2081 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2082 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2083 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2084 | |
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2085 |
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2086 def test_incoming_jpeg(self): |
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2087 def storescu(image, acceptUnknownSopClassUid): |
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2088 if acceptUnknownSopClassUid: |
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2089 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2090 else: |
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2091 tmp = [ '-xs' ] |
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2092 |
|
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2093 with open(os.devnull, 'w') as FNULL: |
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2094 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2095 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2096 GetDatabasePath(image) ], |
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2097 stderr = FNULL) |
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2098 |
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2099 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2100 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
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2101 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2102 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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2103 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2104 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
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2105 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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2106 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2107 storescu('UnknownSopClassUid.dcm', True) |
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2108 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2109 |
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2110 |
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2111 def test_storescu_jpeg(self): |
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2112 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2113 |
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2114 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2115 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2116 | |
| 2117 # This is JPEG lossless | |
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2118 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2119 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2120 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2121 |
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2122 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2123 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2124 |
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2125 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2126 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2127 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2128 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2129 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2130 |
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2131 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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parents:
18
diff
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|
2132 |
|
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parents:
18
diff
changeset
|
2133 DropOrthanc(_REMOTE) |
|
2a29bcff60a7
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18
diff
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|
2134 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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parents:
18
diff
changeset
|
2135 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2136 |
|
2a29bcff60a7
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parents:
18
diff
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|
2137 def test_pixel_data(self): |
|
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tests of image decoding
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18
diff
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|
2138 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
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parents:
18
diff
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|
2139 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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parents:
18
diff
changeset
|
2140 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2141 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2142 phenixSize = 358 * 512 * 2 |
|
2a29bcff60a7
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parents:
18
diff
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|
2143 colorSize = 1000 * 1000 * 3 |
|
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parents:
18
diff
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|
2144 jpegSize = 51918 |
|
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tests of image decoding
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18
diff
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|
2145 |
|
2a29bcff60a7
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18
diff
changeset
|
2146 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
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18
diff
changeset
|
2147 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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diff
changeset
|
2148 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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diff
changeset
|
2149 |
|
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18
diff
changeset
|
2150 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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18
diff
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|
2151 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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diff
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|
2152 |
|
2a29bcff60a7
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changeset
|
2153 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
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diff
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|
2154 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
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parents:
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diff
changeset
|
2155 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2156 |
|
2a29bcff60a7
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diff
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|
2157 def test_decode_brainix(self): |
|
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|
2158 brainix = [ |
|
2a29bcff60a7
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parents:
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diff
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|
2159 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
2a29bcff60a7
tests of image decoding
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diff
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|
2160 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
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parents:
18
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|
2161 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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parents:
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diff
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|
2162 ] |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2163 h = '6fb11b932d535c2be04beabd99793ff8' |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
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|
2164 maxValue = 426.0 |
|
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18
diff
changeset
|
2165 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2166 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
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parents:
18
diff
changeset
|
2167 for i in brainix: |
|
2a29bcff60a7
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18
diff
changeset
|
2168 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2169 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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parents:
18
diff
changeset
|
2170 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2171 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2172 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2173 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2174 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2175 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2176 for i in brainix: |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2177 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2178 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2179 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2180 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2181 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2182 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2183 def test_decode_color(self): |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2184 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2185 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2186 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2187 for i in [ imagej, color ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2188 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2189 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2190 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2191 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2192 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2193 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2194 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2195 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2196 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2197 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2198 def test_decode_rf(self): |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2199 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2200 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2201 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2202 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2203 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2204 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2205 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2206 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2207 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2208 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2209 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2210 def test_decode_multiframe(self): |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2211 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
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18
diff
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|
2212 |
|
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18
diff
changeset
|
2213 # Test the first frame |
|
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18
diff
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|
2214 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2215 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
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18
diff
changeset
|
2216 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
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18
diff
changeset
|
2217 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
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18
diff
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|
2218 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2219 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
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18
diff
changeset
|
2220 |
|
2a29bcff60a7
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18
diff
changeset
|
2221 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
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18
diff
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|
2222 |
|
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diff
changeset
|
2223 # Test the last frame |
|
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18
diff
changeset
|
2224 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
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18
diff
changeset
|
2225 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
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18
diff
changeset
|
2226 |
|
2a29bcff60a7
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18
diff
changeset
|
2227 |
|
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18
diff
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|
2228 def test_decode_signed(self): |
|
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18
diff
changeset
|
2229 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
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18
diff
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|
2230 minValue = -2000 |
|
2a29bcff60a7
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18
diff
changeset
|
2231 maxValue = 4042 |
|
2a29bcff60a7
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18
diff
changeset
|
2232 |
|
2a29bcff60a7
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18
diff
changeset
|
2233 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2234 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
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18
diff
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|
2235 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2236 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2237 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
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tests of image decoding
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parents:
18
diff
changeset
|
2238 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2239 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2240 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
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parents:
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diff
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|
2241 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2242 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2243 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2244 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2245 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2246 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2247 |
| 2248 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2249 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
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parents:
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diff
changeset
|
2250 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
dbcbffb889da
test_findscu_encoding
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parents:
89
diff
changeset
|
2251 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2252 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2253 |
| 22 | 2254 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2255 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2256 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2257 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2258 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2259 | |
|
92
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2260 # Replay the same test using Latin1 as default encoding: This must fail |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2261 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2262 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2263 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2264 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2265 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2266 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2267 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2268 |
| 22 | 2269 def test_encodings(self): |
| 23 | 2270 # Latin-1 (ISO_IR 100) |
| 22 | 2271 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2272 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2273 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2274 |
| 2275 # Latin-2 (ISO_IR 101) | |
| 2276 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2277 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2278 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2279 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2280 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2281 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2282 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2283 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2284 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2285 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2286 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2287 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2288 |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
changeset
|
2289 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2290 |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2291 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
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|
2292 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2293 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2294 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2295 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2296 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2297 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
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|
2298 }) |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2299 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2300 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2301 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2302 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
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|
2303 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2304 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2305 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2306 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2307 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
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|
2308 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2309 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2310 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2311 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2312 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2313 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2314 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
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|
2315 |
| 174 | 2316 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2317 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2318 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2319 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2320 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2321 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2322 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2323 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2324 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2325 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2326 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2327 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2328 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
changeset
|
2329 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
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diff
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|
2330 |
|
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diff
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|
2331 def test_resources_since_limit(self): |
|
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|
2332 # Upload 16 instances |
|
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|
2333 for i in range(4): |
|
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diff
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|
2334 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
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changeset
|
2335 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
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diff
changeset
|
2336 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
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diff
changeset
|
2337 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
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changeset
|
2338 |
|
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diff
changeset
|
2339 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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changeset
|
2340 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2341 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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diff
changeset
|
2342 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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diff
changeset
|
2343 |
|
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diff
changeset
|
2344 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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diff
changeset
|
2345 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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diff
changeset
|
2346 |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2347 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2348 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2349 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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2350 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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diff
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|
2351 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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diff
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|
2352 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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diff
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|
2353 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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diff
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|
2354 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
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|
2355 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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parents:
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diff
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|
2356 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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diff
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|
2357 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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diff
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|
2358 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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diff
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|
2359 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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diff
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|
2360 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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diff
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|
2361 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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28
diff
changeset
|
2362 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2363 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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28
diff
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|
2364 s = {} |
|
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28
diff
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|
2365 since = 0 |
|
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28
diff
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|
2366 while True: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
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|
2367 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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diff
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|
2368 if len(t) == 0: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2369 break |
|
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parents:
28
diff
changeset
|
2370 |
|
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parents:
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diff
changeset
|
2371 since += len(t) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2372 for i in t: |
|
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diff
changeset
|
2373 s[i] = None |
|
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parents:
28
diff
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|
2374 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
2375 self.assertEqual(16, len(s)) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2376 for instance in DoGet(_REMOTE, '/instances'): |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2377 self.assertTrue(instance in s) |
| 36 | 2378 |
| 2379 | |
| 2380 def test_create_pdf(self): | |
| 2381 # Upload 4 instances | |
| 2382 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2383 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2384 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2385 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2386 | |
| 2387 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2388 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2389 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2390 | |
| 2391 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2392 pdf = f.read() | |
| 2393 | |
| 2394 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2395 json.dumps({ | |
| 2396 'Tags' : { | |
| 2397 'PatientName' : 'Jodogne', | |
| 2398 'Modality' : 'CT', | |
| 2399 }, | |
| 2400 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2401 })) | |
| 2402 | |
| 2403 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2404 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2405 | |
| 2406 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2407 self.assertEqual(len(b), len(pdf) + 1) | |
| 2408 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2409 | |
| 2410 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2411 json.dumps({ | |
| 2412 'Parent' : brainixPatient, | |
| 2413 'Tags' : { | |
| 2414 'PatientName' : 'Jodogne', | |
| 2415 } | |
| 2416 }))) | |
| 2417 | |
| 2418 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2419 json.dumps({ | |
| 2420 'Parent' : brainixPatient, | |
| 2421 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2422 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2423 })) | |
| 2424 | |
| 2425 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2426 | |
| 2427 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2428 json.dumps({ | |
| 2429 'Parent' : brainixStudy, | |
| 2430 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2431 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2432 })) | |
| 2433 | |
| 2434 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2435 | |
| 2436 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2437 json.dumps({ | |
| 2438 'Parent' : brainixEpi, | |
| 37 | 2439 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2440 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2441 })) | |
| 2442 | |
| 2443 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2444 | |
| 2445 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2446 self.assertEqual(len(b), len(pdf)) | |
| 2447 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2448 | |
| 2449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2450 |
| 2451 | |
| 2452 def test_create_series(self): | |
| 2453 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2454 json.dumps({ | |
| 2455 'Tags' : { | |
| 40 | 2456 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2457 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2458 'Modality' : 'CT', |
| 2459 }, | |
| 2460 'Content' : [ | |
| 40 | 2461 { |
| 2462 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2463 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2464 }, | |
| 38 | 2465 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2466 ] | |
| 2467 })) | |
| 2468 | |
| 2469 s = DoGet(_REMOTE, i['Path']) | |
| 2470 self.assertEqual('Series', s['Type']) | |
| 2471 self.assertEqual(s['ID'], i['ID']) | |
| 2472 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2473 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2474 self.assertEqual('Complete', s['Status']) | |
| 40 | 2475 |
| 2476 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2477 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2478 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2479 if 'ImageComments' in a: | |
| 2480 self.assertEqual('Tutu', a['ImageComments']) | |
| 2481 else: | |
| 2482 self.assertEqual('Tutu', b['ImageComments']) | |
| 2483 | |
| 2484 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2485 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2486 'Sébastien Jodogne') | |
| 47 | 2487 |
| 2488 | |
| 2489 def test_create_binary(self): | |
| 2490 binary = ''.join(map(chr, range(256))) | |
| 2491 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2492 tags = { | |
| 2493 'PatientName' : 'Jodogne', | |
| 2494 '8899-8899' : encoded | |
| 2495 } | |
| 2496 | |
| 2497 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2498 json.dumps({ | |
| 2499 'Tags' : tags | |
| 2500 })) | |
| 2501 | |
| 2502 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2503 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2504 | |
| 2505 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2506 json.dumps({ | |
| 2507 'InterpretBinaryTags' : False, | |
| 2508 'Tags' : tags | |
| 2509 })) | |
| 2510 | |
| 2511 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2512 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2513 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2514 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2515 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2516 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2517 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2518 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2519 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2520 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2521 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
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parents:
47
diff
changeset
|
2522 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2523 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2524 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2525 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2526 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
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parents:
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diff
changeset
|
2527 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
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parents:
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diff
changeset
|
2528 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
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parents:
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diff
changeset
|
2529 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
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parents:
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diff
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|
2530 |
|
e4352463ff74
test_patient_ids_collision
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parents:
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diff
changeset
|
2531 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2532 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2533 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2534 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
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diff
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|
2535 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
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diff
changeset
|
2536 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2537 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
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diff
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|
2538 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2539 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2540 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2541 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2542 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
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diff
changeset
|
2543 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
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47
diff
changeset
|
2544 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
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diff
changeset
|
2545 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
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diff
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|
2546 |
|
e4352463ff74
test_patient_ids_collision
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47
diff
changeset
|
2547 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2548 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
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47
diff
changeset
|
2549 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2550 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2551 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2552 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2553 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2554 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2555 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2556 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2557 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2558 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2559 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2560 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2561 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2562 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2563 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2564 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2565 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2566 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2567 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2568 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2569 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2570 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2571 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2572 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2573 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2574 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2575 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2576 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2577 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2578 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2579 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2580 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2581 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2582 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2583 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2584 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2585 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2586 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2587 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2588 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2589 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2590 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2591 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2592 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2593 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2594 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2595 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2596 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2597 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2598 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2599 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2600 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2601 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2602 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2603 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2604 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2605 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2606 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2607 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2608 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2609 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2610 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2611 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2612 |
| 52 | 2613 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2614 | |
| 2615 | |
| 2616 def test_compression(self): | |
| 2617 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2618 | |
| 2619 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2620 | |
| 2621 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2622 # uncompress the data before running the test | |
| 2623 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2624 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2625 | |
| 2626 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2627 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2628 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2629 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2630 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2631 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2632 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2633 | |
| 2634 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2635 self.assertTrue('compress' in ops) | |
| 2636 self.assertTrue('uncompress' in ops) | |
| 2637 self.assertTrue('is-compressed' in ops) | |
| 2638 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2639 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2640 | |
| 2641 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2642 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2643 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2644 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2645 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2646 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2647 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2648 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2649 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2650 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2651 | |
| 2652 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2653 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2654 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2655 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2656 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2657 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2658 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2659 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2660 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2661 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2662 |
| 2663 | |
| 2664 def test_ordered_slices(self): | |
| 2665 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2666 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2667 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2668 self.assertEqual('Sequence', o['Type']) | |
| 2669 self.assertEqual(1, len(o['Dicom'])) | |
| 2670 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2671 self.assertEqual(76, len(o['Slices'])) | |
| 2672 for j in range(76): | |
| 2673 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2674 | |
| 68 | 2675 self.assertEqual(1, len(o['SlicesShort'])) |
| 2676 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2677 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2678 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2679 | |
| 53 | 2680 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2681 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2682 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2683 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2684 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2685 | |
| 2686 self.assertEqual('Volume', o['Type']) | |
| 2687 self.assertEqual(3, len(o['Dicom'])) | |
| 2688 self.assertEqual(3, len(o['Slices'])) | |
| 2689 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2690 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2691 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2692 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2693 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2694 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2695 | |
| 68 | 2696 self.assertEqual(3, len(o['SlicesShort'])) |
| 2697 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2698 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2699 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2700 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2701 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2702 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2703 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2704 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2705 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2706 | |
| 53 | 2707 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2708 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2709 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2710 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2711 | |
| 2712 self.assertEqual('Sequence', o['Type']) | |
| 2713 self.assertEqual(2, len(o['Dicom'])) | |
| 2714 self.assertEqual(2, len(o['Slices'])) | |
| 2715 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2716 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2717 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2718 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2719 |
| 68 | 2720 self.assertEqual(2, len(o['SlicesShort'])) |
| 2721 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2722 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2723 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2724 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2725 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2726 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2727 | |
| 2728 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2729 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2730 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2731 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2732 |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2733 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2734 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2735 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2736 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2737 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2738 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2739 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2740 # 1 Matching patient, track the job |
| 138 | 2741 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2742 '--study', | |
| 2743 '-k', '0008,0052=STUDY', | |
| 2744 '-k', 'AccessionNumber=A10003245599' | |
| 2745 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2746 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2747 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2748 |
| 55 | 2749 |
| 2750 def test_dicom_to_json(self): | |
| 2751 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2752 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2753 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2754 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2755 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2756 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2757 # Tags for compatibility with DCMTK 3.6.0 |
| 2758 'RETIRED_OtherPatientIDs', | |
| 2759 'OtherPatientIDs', | |
| 2760 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2761 ])) |
| 55 | 2762 |
| 2763 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2764 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2765 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2766 ])) |
| 55 | 2767 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2768 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2769 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2770 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2771 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2772 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2773 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2774 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2775 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2776 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2777 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2778 self.assertEqual(aa, tt) |
| 57 | 2779 |
| 2780 | |
| 2781 def test_batch_archive(self): | |
| 2782 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2783 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2784 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2785 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2786 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2787 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2788 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2789 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2790 | |
| 2791 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2792 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2793 self.assertEqual(0, len(z.namelist())) | |
| 2794 | |
| 2795 # One patient | |
| 2796 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2797 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2798 self.assertEqual(4, len(z.namelist())) | |
| 2799 | |
| 2800 # One patient + twice its study + one series from other patient | |
| 2801 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2802 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2803 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2804 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2805 ]) | |
| 2806 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2807 self.assertEqual(6, len(z.namelist())) | |
| 2808 | |
| 2809 # One patient + one series + one instance | |
| 2810 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2811 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2812 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2813 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2814 ]) | |
| 2815 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2816 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2817 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2818 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2819 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2820 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2821 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2822 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2823 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2824 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2825 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2826 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2827 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2828 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2829 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2830 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2831 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2832 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2833 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2834 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2835 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2836 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2837 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2838 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2839 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2840 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2841 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2842 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2843 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2844 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2845 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2846 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2847 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2848 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2849 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2850 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2851 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2852 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2853 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2854 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2855 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2856 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2857 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2858 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2859 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2860 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2861 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2862 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2863 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2864 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2865 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2866 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2867 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2868 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2869 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2870 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2871 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2872 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2873 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2874 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2875 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2876 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2877 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2878 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2879 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2880 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2881 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2882 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2883 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2884 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2885 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2886 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2887 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2888 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2889 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2890 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2891 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2892 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2893 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2894 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2895 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2896 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2897 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2898 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2899 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2900 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2901 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2902 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2903 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2904 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2905 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2906 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2907 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2908 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2909 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2910 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2911 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2912 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2913 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2914 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2915 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2916 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2917 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2918 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2919 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2920 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2921 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2922 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2923 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2924 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2925 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2926 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2927 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2928 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2929 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2930 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2931 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2932 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2933 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2934 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2935 self.assertTrue('CT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2936 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2937 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2938 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2939 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
2940 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2941 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2942 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2943 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2944 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2945 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2946 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2947 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2948 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2949 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2950 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2951 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
2952 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2953 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2954 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2955 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2956 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2957 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2958 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2959 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2960 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2961 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2962 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2963 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2964 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2965 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2966 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2967 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2968 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2969 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2970 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 2971 |
| 2972 | |
| 2973 def test_raw_frame(self): | |
| 2974 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 2975 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2976 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2977 self.assertEqual(512 * 512 * 2, len(a)) | |
| 2978 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 2979 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 2980 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 2981 | |
| 2982 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2983 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2984 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 2985 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 2986 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 2987 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2988 self.assertEqual("L", im.mode) | |
| 2989 self.assertEqual(512, im.size[0]) | |
| 2990 self.assertEqual(512, im.size[1]) | |
| 2991 | |
| 2992 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 2993 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 2994 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 2995 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 2996 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 2997 self.assertEqual(69214, len(a)) | |
| 2998 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 2999 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3000 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3001 self.assertEqual("RGB", im.mode) | |
| 3002 self.assertEqual(512, im.size[0]) | |
| 3003 self.assertEqual(512, im.size[1]) | |
| 3004 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 3005 self.assertEqual("RGB", im.mode) | |
| 3006 self.assertEqual(512, im.size[0]) | |
| 3007 self.assertEqual(512, im.size[1]) | |
| 81 | 3008 |
| 3009 | |
| 3010 | |
| 3011 def test_rest_movescu(self): | |
| 3012 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3013 | |
| 3014 # Upload 4 instances | |
| 3015 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3016 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3017 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3018 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3019 | |
| 3020 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3021 for p in DoGet(_REMOTE, '/patients'): | |
| 3022 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3023 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3024 | |
| 3025 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3026 | |
| 3027 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3028 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3029 'Resources' : [ | |
| 3030 { | |
| 3031 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3032 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3033 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3034 } | |
| 3035 ]}) | |
| 3036 | |
| 3037 # Upload series Brainix/Flair/* | |
| 3038 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3039 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3040 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3041 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3042 | |
| 3043 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3044 'Resources' : [ | |
| 3045 { | |
| 3046 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3047 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3048 } | |
| 3049 ]}) | |
| 3050 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3051 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3052 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3053 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3054 | |
| 3055 # Upload series Brainix/Epi/* | |
| 3056 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3057 'Resources' : [ | |
| 3058 { | |
| 3059 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3060 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3061 } | |
| 3062 ]}) | |
| 3063 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3064 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3065 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3066 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3067 | |
| 3068 # Upload study Knee/* | |
| 3069 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3070 'Resources' : [ | |
| 3071 { | |
| 3072 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3073 } | |
| 3074 ]}) | |
| 3075 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3076 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3077 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3078 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3079 | |
| 3080 # Reset | |
| 3081 for p in DoGet(_REMOTE, '/patients'): | |
| 3082 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3083 | |
| 3084 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3085 | |
| 3086 | |
| 3087 # Upload all at once | |
| 3088 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3089 'Resources' : [ | |
| 3090 { | |
| 3091 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3092 }, | |
| 3093 { | |
| 3094 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3095 } | |
| 3096 ]}) | |
| 3097 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3098 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3099 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3100 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3101 | |
|
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3102 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3103 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3104 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3105 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3106 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3107 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3108 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3109 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3110 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3111 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3112 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3113 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3114 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3115 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3116 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3117 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3118 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3119 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3120 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3121 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3122 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3123 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3124 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3125 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3126 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3127 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3128 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3129 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3130 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3131 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3132 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3133 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3134 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3135 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3136 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3137 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3138 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3139 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3140 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3141 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3142 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3143 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3144 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3145 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3146 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3147 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3148 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3149 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3150 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3151 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3152 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3153 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3154 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3155 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3156 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3157 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3158 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3159 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3160 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3161 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3162 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3163 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3164 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3165 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3166 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3167 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3168 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3169 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3170 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3171 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3172 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3173 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3174 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3175 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3176 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3177 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3178 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3179 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3180 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3181 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3182 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3183 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3184 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3185 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3186 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3187 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3188 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3189 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3190 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3191 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3192 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3193 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3194 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3195 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3196 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3197 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3198 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3199 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3200 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3201 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3202 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3203 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3204 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3205 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3206 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3207 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3208 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3209 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3210 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3211 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3212 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3213 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3214 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3215 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3216 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3217 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3218 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3219 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3220 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3221 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3222 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3223 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3224 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3225 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3226 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3227 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3228 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3229 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3230 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3231 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3232 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3233 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3234 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3235 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3236 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3237 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3238 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3239 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3240 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3241 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3242 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3243 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3244 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3245 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3246 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3247 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3248 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3249 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3250 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3251 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3252 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3253 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3254 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3255 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3256 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3257 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3258 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3259 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3260 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3261 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3262 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3263 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3264 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3265 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3266 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3267 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
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diff
changeset
|
3268 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
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diff
changeset
|
3269 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
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95
diff
changeset
|
3270 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
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95
diff
changeset
|
3271 "SOPInstanceUID" : "myid", |
|
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95
diff
changeset
|
3272 }, |
| 119 | 3273 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3274 "Force" : True | |
|
96
272d1229cb49
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diff
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|
3275 }) |
|
272d1229cb49
test reconstruction of tags
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95
diff
changeset
|
3276 |
|
272d1229cb49
test reconstruction of tags
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diff
changeset
|
3277 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
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parents:
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diff
changeset
|
3278 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
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diff
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|
3279 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
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diff
changeset
|
3280 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
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95
diff
changeset
|
3281 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
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parents:
95
diff
changeset
|
3282 |
|
272d1229cb49
test reconstruction of tags
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parents:
95
diff
changeset
|
3283 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
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parents:
95
diff
changeset
|
3284 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3285 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3286 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3287 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
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parents:
95
diff
changeset
|
3288 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
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parents:
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diff
changeset
|
3289 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
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parents:
95
diff
changeset
|
3290 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
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parents:
95
diff
changeset
|
3291 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3292 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
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test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3293 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3294 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3295 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3296 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3297 |
| 104 | 3298 def test_httpClient_lua(self): |
| 3299 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3300 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3301 | |
| 3302 self.assertIn('OK', result) | |
|
107
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|
3303 |
|
fddb35f7289d
test_bitbucket_issue_44
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|
3304 |
|
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test_bitbucket_issue_44
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|
3305 def test_bitbucket_issue_44(self): |
|
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|
3306 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
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|
3307 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
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|
3308 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
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|
3309 |
|
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diff
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|
3310 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
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|
3311 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
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3312 |
|
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|
3313 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
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|
3314 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
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|
3315 |
|
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|
3316 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
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|
3317 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
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|
3318 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
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|
3319 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
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|
3320 |
|
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changeset
|
3321 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
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|
3322 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
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|
3323 self.assertEqual("L", im.mode) |
|
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|
3324 self.assertEqual(2010, im.size[0]) |
|
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|
3325 self.assertEqual(2446, im.size[1]) |
|
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|
3326 |
|
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|
3327 # This is the chest image, with MONOCHROME1. Raw background is |
|
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|
3328 # white (255), should be rendered as black (0) => invert |
|
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|
3329 if i == monochrome1_jpeg: |
|
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changeset
|
3330 # Add some tolerance because of JPEG destructive compression |
|
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diff
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|
3331 self.assertGreater(10, im.getpixel((0,0))) |
|
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|
3332 else: |
|
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diff
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|
3333 self.assertEqual(0, im.getpixel((0,0))) |
|
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|
3334 |
|
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diff
changeset
|
3335 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
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|
3336 self.assertEqual("L", im.mode) |
|
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|
3337 self.assertEqual(1572, im.size[0]) |
|
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changeset
|
3338 self.assertEqual(2010, im.size[1]) |
|
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|
3339 |
|
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diff
changeset
|
3340 # This is the key image, with MONOCHROME2. Raw background is |
|
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|
3341 # white (255), should be rendered as white (255) |
|
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|
3342 self.assertEqual(255, im.getpixel((0,0))) |
|
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|
3343 |
|
7005cdeeb704
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diff
changeset
|
3344 |
|
7005cdeeb704
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changeset
|
3345 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
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|
3346 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3347 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
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diff
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|
3348 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
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|
3349 modified = DoPost(_REMOTE, |
|
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|
3350 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3351 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
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|
3352 'application/json') |
|
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|
3353 self.assertTrue('PatientID' in modified) |
|
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|
3354 |
|
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|
3355 |
|
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changeset
|
3356 def test_rest_find_limit(self): |
|
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|
3357 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
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|
3358 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
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3359 |
|
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|
3360 # Upload 6 instances |
|
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|
3361 brainix = [] |
|
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|
3362 knee = [] |
|
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|
3363 for i in range(2): |
|
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changeset
|
3364 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
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|
3365 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
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|
3366 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
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3367 |
|
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|
3368 # Check using BRAINIX |
|
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|
3369 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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|
3370 'Query' : { 'PatientName' : 'B*' }, |
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|
3371 'Limit' : 10 }) |
|
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|
3372 self.assertEqual(4, len(a)) |
|
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|
3373 |
|
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changeset
|
3374 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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|
3375 'Query' : { 'PatientName' : 'B*' }, |
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|
3376 'Limit' : 4 }) |
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112
diff
changeset
|
3377 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3378 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3379 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3380 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3381 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3382 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3383 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3384 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3385 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3386 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3387 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3388 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3389 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3390 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3391 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3392 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3393 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3394 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3395 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3396 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3397 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3398 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3399 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3400 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3401 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3402 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3403 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3404 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3405 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3406 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3407 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3408 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3409 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3410 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3411 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3412 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3413 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3414 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3415 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3416 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3417 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3418 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3419 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3420 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3421 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3422 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3423 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3424 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3425 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3426 # "PHI remaining after anonymization" |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3427 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3428 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3429 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3430 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3431 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3432 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3433 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3434 self.assertEqual(1, len(a)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3435 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3436 instance = a[0]['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3437 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3438 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3439 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3440 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3441 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3442 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3443 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3444 # (Patient's Mother's Birth Name) tags |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3445 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3446 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3447 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3448 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3449 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3450 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3451 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3452 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3453 self.assertTrue('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3454 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3455 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3456 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3457 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3458 self.assertFalse('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3459 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3460 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3461 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3462 for (key, value) in tags.iteritems(): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3463 t[value['Name']] = value['Value'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3464 |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3465 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3466 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3467 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3468 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3469 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3470 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3471 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3472 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
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113
diff
changeset
|
3473 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3474 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3475 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3476 stderr = subprocess.STDOUT).split('\n') |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3477 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3478 |
|
a954c535fef6
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3479 def test_bitbucket_issue_55(self): |
|
a954c535fef6
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parents:
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diff
changeset
|
3480 def Run(modify, query): |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3481 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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117
diff
changeset
|
3482 |
|
a954c535fef6
test_bitbucket_issue_55
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117
diff
changeset
|
3483 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3484 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3485 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3486 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3487 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3488 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3489 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3490 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3491 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3492 DoDelete(_REMOTE, a) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3493 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3494 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3495 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3496 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3497 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3498 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3499 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3500 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3501 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3502 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3503 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3504 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3505 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3506 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3507 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3508 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3509 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3510 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3511 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3512 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3513 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3514 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3515 # is set to "false" (default value). |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3516 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3517 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3518 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3519 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3520 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3521 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3522 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3523 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3524 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3525 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3526 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3527 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3528 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3529 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3530 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3531 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3532 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3533 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3534 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3535 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3536 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3537 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3538 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3539 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3540 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3541 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3542 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3543 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3544 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3545 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3546 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3547 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3548 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3549 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3550 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3551 |
| 125 | 3552 |
| 3553 def test_gbk_alias(self): | |
| 3554 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3555 # This test fails on Orthanc <= 1.3.0 | |
| 3556 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3557 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3558 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3559 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3560 |
| 3561 | |
| 3562 def test_long_tag(self): | |
| 3563 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3564 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3565 | |
| 3566 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3567 self.assertTrue('0018,1020' in tags) | |
| 3568 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3569 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3570 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3571 | |
| 3572 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3573 self.assertTrue('0018,1020' in tags) | |
| 3574 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3575 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3576 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3577 | |
| 3578 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3579 self.assertTrue('SoftwareVersions' in tags) | |
| 3580 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3581 self.assertTrue('HeartRate' in tags) | |
| 3582 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3583 | |
| 3584 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3585 self.assertTrue('SoftwareVersions' in tags) | |
| 3586 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3587 | |
| 3588 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3589 self.assertTrue('SoftwareVersions' in tags) | |
| 3590 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3591 | |
| 3592 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3593 self.assertTrue('SoftwareVersions' in tags) | |
| 3594 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3595 | |
| 3596 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3597 self.assertEqual(1, len(tags)) | |
| 3598 self.assertTrue(i in tags.keys()) | |
| 3599 self.assertTrue('0018,1020' in tags[i]) | |
| 3600 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3601 | |
| 3602 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3603 self.assertEqual(1, len(tags)) | |
| 3604 self.assertTrue(i in tags.keys()) | |
| 3605 self.assertTrue('0018,1020' in tags[i]) | |
| 3606 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3607 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3608 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3609 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3610 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3612 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3613 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3614 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3615 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3616 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3617 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3618 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3619 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3620 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3621 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3622 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3623 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3624 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3625 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3626 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3627 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3628 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3629 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3630 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3631 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3632 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3633 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3634 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3635 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3636 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3637 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3638 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3639 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3640 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3641 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3642 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3643 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3644 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3645 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3646 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3647 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3648 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3649 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3650 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3651 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3652 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3653 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3654 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3655 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3656 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3657 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3658 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3659 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3660 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3661 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3662 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3663 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3664 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3665 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3666 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3667 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3668 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3669 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3670 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3671 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3672 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3673 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3674 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3675 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3676 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3677 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3678 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3679 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3680 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3681 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3682 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3683 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3684 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3685 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3686 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3687 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3688 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3689 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3690 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3691 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3692 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3693 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3694 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3695 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3696 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3697 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3698 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3699 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3700 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3701 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3702 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3703 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3704 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3705 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3706 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3707 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3708 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3709 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3710 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3711 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3712 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3713 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3714 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3715 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3716 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3717 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3718 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3719 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3720 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3721 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3722 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3723 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3724 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3725 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3726 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3727 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3728 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3729 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3730 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3731 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3732 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3733 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3734 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3735 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3736 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3737 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3738 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3739 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3740 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3741 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3742 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3743 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3744 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3745 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3746 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3747 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3748 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3749 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3750 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3751 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3752 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3753 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3754 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3755 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3756 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3757 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3758 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3759 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3760 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3761 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3762 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3763 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3764 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3765 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3766 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3767 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3768 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3769 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3770 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3771 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3772 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3773 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3774 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3775 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3776 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3777 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3778 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3779 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3780 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3781 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3782 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3783 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3784 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3785 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3786 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3787 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3788 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3789 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3790 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3791 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3792 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3793 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3794 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3795 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3796 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3797 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3798 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3799 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3800 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3801 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3802 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3803 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3804 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3805 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3806 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3807 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3808 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3809 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3810 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3811 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3812 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3813 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3814 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3815 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3816 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3817 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3818 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3819 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3820 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3821 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3822 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3823 |
|
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3824 def test_metadata_origin(self): |
|
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3825 # Upload using the REST API |
|
144
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3826 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
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3827 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3828 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3829 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3830 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3831 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
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3832 |
|
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3833 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3834 self.assertEqual('RestApi', m['Origin']) |
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|
3835 self.assertEqual('', m['RemoteAET']) |
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3836 self.assertNotEqual('', m['RemoteIP']) |
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|
3837 self.assertFalse('CalledAET' in m) |
|
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3838 self.assertEqual('alice', m['HttpUsername']) |
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3839 |
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3840 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3841 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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|
3842 self.assertEqual('1', m['IndexInSeries']) |
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|
3843 self.assertTrue('ReceptionDate' in m) |
|
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3844 |
|
143
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|
3845 DoDelete(_REMOTE, '/instances/%s' % i) |
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3846 |
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3847 # Upload using the DICOM protocol |
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3848 subprocess.check_call([ FindExecutable('storescu'), |
|
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|
3849 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
144
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|
3850 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
|
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|
3851 '-xw' ]) # Propose JPEG2000 |
|
143
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|
3852 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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changeset
|
3853 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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|
3854 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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|
3855 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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|
3856 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
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3857 |
|
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changeset
|
3858 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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changeset
|
3859 self.assertEqual('DicomProtocol', m['Origin']) |
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|
3860 self.assertEqual('STORESCU', m['RemoteAET']) |
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changeset
|
3861 self.assertNotEqual('', m['RemoteIP']) |
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|
3862 self.assertEqual('ANY-SCP', m['CalledAET']) |
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|
3863 self.assertFalse('HttpUsername' in m) |
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|
3864 |
|
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changeset
|
3865 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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changeset
|
3866 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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|
3867 self.assertEqual('1', m['IndexInSeries']) |
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changeset
|
3868 self.assertTrue('ReceptionDate' in m) |
| 147 | 3869 |
| 3870 | |
| 3871 def test_lua_deadlock(self): | |
| 3872 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 3873 # is with the lua script I'm using for conversion of images to | |
| 3874 # JPEG2000. When the script is used with 1.4.0 the first | |
| 3875 # instance appears to be stored and then everything just | |
| 3876 # halts, ie Orthanc wont respond to anything after that." | |
| 3877 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 3878 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 3879 |
| 3880 subprocess.check_call([ FindExecutable('storescu'), | |
| 3881 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 3882 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 3883 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 3884 ]) | |
| 3885 | |
| 3886 instances = DoGet(_REMOTE, '/instances') | |
| 3887 self.assertEqual(2, len(instances)) | |
| 3888 | |
| 3889 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 3890 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 3891 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 3892 self.assertEqual(t1, t2); |
|
154
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changeset
|
3893 |
|
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test_find_group_length
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diff
changeset
|
3894 |
|
4a533d003080
test_find_group_length
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diff
changeset
|
3895 def test_find_group_length(self): |
|
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test_find_group_length
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diff
changeset
|
3896 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
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test_find_group_length
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diff
changeset
|
3897 # one of the Generic Group Length tags (*, 0x0000) |
|
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test_find_group_length
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diff
changeset
|
3898 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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test_find_group_length
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diff
changeset
|
3899 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
|
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changeset
|
3900 self.assertFalse('UnableToProcess' in result) |
|
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diff
changeset
|
3901 self.assertFalse('E:' in result) |
|
179
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|
3902 |
|
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diff
changeset
|
3903 |
|
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diff
changeset
|
3904 def test_split(self): |
|
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|
3905 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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diff
changeset
|
3906 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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diff
changeset
|
3907 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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diff
changeset
|
3908 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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diff
changeset
|
3909 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
|
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diff
changeset
|
3910 |
|
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diff
changeset
|
3911 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
|
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diff
changeset
|
3912 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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diff
changeset
|
3913 |
|
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diff
changeset
|
3914 info = DoGet(_REMOTE, '/studies/%s' % study) |
|
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diff
changeset
|
3915 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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diff
changeset
|
3916 |
|
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diff
changeset
|
3917 job = MonitorJob2(_REMOTE, lambda: DoPost |
|
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diff
changeset
|
3918 (_REMOTE, '/studies/%s/split' % study, { |
|
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diff
changeset
|
3919 'Series' : [ t2 ], |
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diff
changeset
|
3920 'Replace' : { 'PatientName' : 'Hello' }, |
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diff
changeset
|
3921 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 3922 'KeepSource' : False, |
| 3923 'Asynchronous' : True | |
|
179
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diff
changeset
|
3924 })) |
|
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diff
changeset
|
3925 |
|
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diff
changeset
|
3926 self.assertNotEqual(None, job) |
|
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diff
changeset
|
3927 |
|
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diff
changeset
|
3928 studies = set(DoGet(_REMOTE, '/studies')) |
|
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diff
changeset
|
3929 self.assertEqual(2, len(studies)) |
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diff
changeset
|
3930 |
|
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diff
changeset
|
3931 series = set(DoGet(_REMOTE, '/series')) |
|
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diff
changeset
|
3932 self.assertEqual(2, len(series)) |
|
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diff
changeset
|
3933 self.assertTrue(t1 in series) |
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diff
changeset
|
3934 |
|
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diff
changeset
|
3935 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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diff
changeset
|
3936 self.assertTrue(study in studies) |
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diff
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|
3937 self.assertTrue(study2 in studies) |
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diff
changeset
|
3938 |
|
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diff
changeset
|
3939 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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diff
changeset
|
3940 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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diff
changeset
|
3941 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
|
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diff
changeset
|
3942 |
|
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diff
changeset
|
3943 |
|
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diff
changeset
|
3944 def test_merge(self): |
|
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diff
changeset
|
3945 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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diff
changeset
|
3946 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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diff
changeset
|
3947 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
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3948 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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3949 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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3950 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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3951 |
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3952 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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3953 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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3954 |
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3955 job = MonitorJob2(_REMOTE, lambda: DoPost |
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3956 (_REMOTE, '/studies/%s/merge' % knee, { |
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3957 'Resources' : [ brainix ], |
| 181 | 3958 'KeepSource' : True, |
| 3959 'Synchronous' : False | |
|
179
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3960 })) |
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3961 |
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3962 self.assertNotEqual(None, job) |
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3963 |
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3964 studies = set(DoGet(_REMOTE, '/studies')) |
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3965 self.assertEqual(2, len(studies)) |
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3966 self.assertTrue(knee in studies) |
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3967 self.assertTrue(brainix in studies) |
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3968 |
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3969 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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3970 self.assertTrue(t1 in series) |
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3971 series.remove(t1) |
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3972 self.assertEqual(1, len(series)) |
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3973 |
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3974 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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3975 self.assertEqual(1, len(instances)) |
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3976 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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3977 |
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3978 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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3979 self.assertEqual(1, len(instances)) |
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3980 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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3981 |
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3982 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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3983 self.assertEqual(1, len(instances)) |
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3984 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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3985 |
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3986 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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3987 |
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3988 for key in tags['PatientMainDicomTags']: |
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3989 self.assertEqual(a[key], merged[key]) |
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3990 if (key in b and key != 'PatientSex'): |
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3991 self.assertNotEqual(a[key], b[key]) |
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3992 |
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3993 for key in tags['MainDicomTags']: |
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3994 # Not in the patient/study module |
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3995 if (not key in [ 'InstitutionName', |
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3996 'RequestingPhysician', |
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3997 'RequestedProcedureDescription', ]): |
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3998 self.assertEqual(a[key], merged[key]) |
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3999 if (key in b): |
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4000 self.assertNotEqual(a[key], b[key]) |
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4001 |
| 187 | 4002 |
| 4003 def test_async_archive(self): | |
| 4004 # Testing the asynchronous generation of archives/medias (new | |
| 4005 # in Orthanc 1.4.3) | |
| 4006 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4007 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4008 | |
| 4009 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4010 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4011 | |
| 4012 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4013 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4014 'Synchronous' : False | |
| 4015 })) | |
| 4016 | |
| 4017 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4018 self.assertEqual(1, len(z.namelist())) | |
| 4019 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4020 | |
| 4021 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4022 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4023 'Synchronous' : False | |
| 4024 })) | |
| 4025 | |
| 4026 # The archive from the first job has been replaced by the | |
| 4027 # archive from second job (as MediaArchiveSize == 1) | |
| 4028 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4029 | |
| 4030 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4031 self.assertEqual(2, len(z.namelist())) | |
| 4032 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4033 | |
| 4034 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4035 (_REMOTE, '/tools/create-archive', { | |
| 4036 'Synchronous' : False, | |
| 4037 'Resources' : [ kneeT1, kneeT2 ], | |
| 4038 })) | |
| 4039 | |
| 4040 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4041 self.assertEqual(2, len(z.namelist())) | |
| 4042 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4043 | |
| 4044 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4045 (_REMOTE, '/tools/create-media', { | |
| 4046 'Synchronous' : False, | |
| 4047 'Resources' : [ kneeT1, kneeT2 ], | |
| 4048 })) | |
| 4049 | |
| 4050 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4051 self.assertEqual(3, len(z.namelist())) | |
| 4052 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
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4053 |
| 187 | 4054 |
|
188
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4055 def test_queries_hierarchy(self): |
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4056 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
189
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|
4057 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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4058 |
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4059 tags = { |
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4060 'NumberOfPatientRelatedInstances' : '', |
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4061 'NumberOfPatientRelatedSeries' : '', |
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4062 'NumberOfPatientRelatedStudies' : '', |
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4063 'NumberOfStudyRelatedInstances' : '', |
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4064 'NumberOfStudyRelatedSeries' : '', |
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4065 'NumberOfSeriesRelatedInstances' : '', |
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4066 } |
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4067 |
|
189
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4068 tags2 = copy.copy(tags) |
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4069 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4070 |
|
188
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4071 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4072 'Level' : 'Patient', |
|
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4073 'Query' : tags2 |
|
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4074 }) ['ID'] |
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4075 |
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4076 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4077 'Level' : 'Study', |
|
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4078 'Query' : tags2 |
|
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4079 }) ['ID'] |
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4080 |
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4081 series = DoPost(_REMOTE, '/modalities/self/query', { |
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4082 'Level' : 'Series', |
|
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4083 'Query' : tags2 |
|
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4084 }) ['ID'] |
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4085 |
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4086 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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4087 'Level' : 'Instance', |
|
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4088 'Query' : tags2 |
|
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4089 }) ['ID'] |
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4090 |
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4091 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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4092 self.assertEqual(1, len(p)) |
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4093 self.assertEqual('887', p[0]['PatientID']) |
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4094 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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4095 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4096 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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changeset
|
4097 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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diff
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|
4098 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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diff
changeset
|
4099 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4100 |
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4101 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4102 self.assertEqual(1, len(p)) |
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4103 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4104 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4105 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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|
4106 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4107 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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diff
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|
4108 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4109 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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new test: test_queries_hierarchy
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diff
changeset
|
4110 |
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new test: test_queries_hierarchy
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diff
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|
4111 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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4112 self.assertEqual(1, len(p)) |
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4113 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
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changeset
|
4114 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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diff
changeset
|
4115 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4116 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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new test: test_queries_hierarchy
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diff
changeset
|
4117 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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diff
changeset
|
4118 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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diff
changeset
|
4119 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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diff
changeset
|
4120 |
|
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diff
changeset
|
4121 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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|
4122 self.assertEqual(1, len(p)) |
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4123 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
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diff
changeset
|
4124 |
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new test: test_queries_hierarchy
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diff
changeset
|
4125 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
|
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diff
changeset
|
4126 { 'Query' : tags }) ['ID'] |
|
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diff
changeset
|
4127 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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diff
changeset
|
4128 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4129 |
|
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4130 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4131 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4132 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4133 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4134 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4135 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4136 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4137 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4138 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4139 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4140 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4141 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4142 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4143 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4144 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4145 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4146 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4147 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4148 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4149 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4150 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4151 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4152 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4153 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4154 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
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187
diff
changeset
|
4155 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4156 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4157 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4158 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4159 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
11719f19bd62
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diff
changeset
|
4160 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4161 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4162 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4163 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4164 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4165 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4166 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
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diff
changeset
|
4167 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4168 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4169 self.assertEqual(1, s['CountStudies']) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4170 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4171 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4172 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4173 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
11719f19bd62
test_dicom_disk_size
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diff
changeset
|
4174 |