Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 358:458b2d887ea0
WebDAV: test_upload_zip
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 08 Dec 2020 15:22:41 +0100 |
parents | 18597ca05e48 |
children | 8b476a383999 |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
260
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8 # Copyright (C) 2017-2020 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
202
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
14 | 28 import tempfile |
3 | 29 import unittest |
295 | 30 import shutil |
3 | 31 |
11 | 32 from PIL import ImageChops |
3 | 33 from Toolbox import * |
13 | 34 from xml.dom import minidom |
312 | 35 from datetime import datetime |
3 | 36 |
37 _LOCAL = None | |
38 _REMOTE = None | |
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
3 | 44 _LOCAL = local |
45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
14 | 49 def ExtractDicomTags(rawDicom, tags): |
50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
51 f.write(rawDicom) | |
52 f.flush() | |
45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 54 |
55 result = [] | |
56 for tag in tags: | |
57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
58 if match == None: | |
59 result.append('') | |
60 else: | |
61 result.append(match.group(1)) | |
62 | |
63 return result | |
64 | |
65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
80
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
123 | 85 if a.keys() == b.keys(): |
86 return True | |
87 else: | |
88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
89 return False | |
80
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90 |
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91 |
71
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
142 | 100 def GetMoveScuCommand(): |
101 return [ | |
102 FindExecutable('movescu'), | |
103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
106 _REMOTE['Server'], | |
107 str(_REMOTE['DicomPort']) | |
108 ] | |
109 | |
231
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110 |
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111 def CallMoveScu(args): |
231
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
318
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114 stderr = subprocess.PIPE) |
231
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
3 | 145 class Orthanc(unittest.TestCase): |
146 def setUp(self): | |
83 | 147 if (sys.version_info >= (3, 0)): |
148 # Remove annoying warnings about unclosed socket in Python 3 | |
149 import warnings | |
150 warnings.simplefilter("ignore", ResourceWarning) | |
151 | |
3 | 152 DropOrthanc(_LOCAL) |
153 DropOrthanc(_REMOTE) | |
174 | 154 UninstallLuaCallbacks(_REMOTE) |
312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
44
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
3 | 161 |
162 def test_system(self): | |
177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
166 | |
167 systemInfo = DoGet(_REMOTE, '/system') | |
168 if systemInfo["Version"] == "mainline": | |
169 print "Skipping version checks since you're currently in mainline" | |
170 return | |
171 | |
173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 177 |
178 def test_upload(self): | |
173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
181 | |
182 sizeDummyCT = 2472 | |
183 sizeOverwrite = 2476 | |
184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
185 | |
3 | 186 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
183 | 187 self.assertEqual(instance, u['ID']) |
3 | 188 self.assertEqual('Success', u['Status']) |
173 | 189 |
183 | 190 if True: |
191 # New test for Orthanc 1.4.3 | |
192 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
193 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
194 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
195 | |
173 | 196 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
197 s = sizeDummyCT + j | |
198 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
199 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
200 | |
3 | 201 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
204 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
173 | 206 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
207 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
208 | |
209 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 210 self.assertEqual('20070101', i['StudyDate']) |
173 | 211 self.assertEqual('KNIX', i['PatientName']) |
212 | |
213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
214 # Overwriting | |
215 self.assertEqual('Success', u['Status']) | |
216 else: | |
217 self.assertEqual('AlreadyStored', u['Status']) | |
218 | |
219 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
220 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
221 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
222 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
223 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
224 | |
225 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
226 # Overwriting | |
227 self.assertEqual('Success', u['Status']) | |
228 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
229 s2 = sizeOverwrite + j2 | |
230 self.assertNotEqual(s, s2) | |
231 self.assertNotEqual(j, j2) | |
232 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
233 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
234 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
235 self.assertEqual('ANOTHER', i['PatientName']) | |
236 else: | |
237 self.assertEqual('AlreadyStored', u['Status']) | |
238 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
239 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
3 | 240 |
5 | 241 def test_upload_2(self): |
3 | 242 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
243 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
244 self.assertEqual(i, instance['ID']) | |
245 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
246 instance['MainDicomTags']['SOPInstanceUID']) | |
247 | |
248 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
249 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
250 series['MainDicomTags']['SeriesInstanceUID']) | |
251 | |
252 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
253 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
254 study['MainDicomTags']['StudyInstanceUID']) | |
255 | |
256 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
257 self.assertEqual('ozp00SjY2xG', | |
258 patient['MainDicomTags']['PatientID']) | |
259 | |
260 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
261 self.assertEqual(2472, len(dicom)) | |
262 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
263 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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266 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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267 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 268 |
269 | |
5 | 270 def test_images(self): |
271 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
272 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 273 |
5 | 274 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
275 self.assertEqual("L", im.mode) | |
276 self.assertEqual(512, im.size[0]) | |
277 self.assertEqual(358, im.size[1]) | |
278 | |
279 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
280 self.assertEqual("L", im.mode) | |
281 self.assertEqual(512, im.size[0]) | |
282 self.assertEqual(358, im.size[1]) | |
283 | |
284 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
285 self.assertEqual(512, im.size[0]) | |
286 self.assertEqual(358, im.size[1]) | |
287 | |
288 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
289 self.assertEqual("L", im.mode) | |
290 self.assertEqual(512, im.size[0]) | |
291 self.assertEqual(358, im.size[1]) | |
292 | |
293 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
294 self.assertEqual("L", im.mode) | |
295 self.assertEqual(512, im.size[0]) | |
296 self.assertEqual(358, im.size[1]) | |
297 | |
298 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
299 self.assertEqual(512, im.size[0]) | |
300 self.assertEqual(358, im.size[1]) | |
64 | 301 |
302 # This is Little Endian Explicit | |
303 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
304 | |
6 | 305 |
306 def test_hierarchy(self): | |
307 UploadFolder(_REMOTE, 'Brainix/Epi') | |
308 UploadFolder(_REMOTE, 'Brainix/Flair') | |
309 UploadFolder(_REMOTE, 'Knee/T1') | |
310 UploadFolder(_REMOTE, 'Knee/T2') | |
311 | |
312 p = DoGet(_REMOTE, '/patients') | |
313 s = DoGet(_REMOTE, '/studies') | |
314 t = DoGet(_REMOTE, '/series') | |
315 self.assertEqual(2, len(p)) | |
316 self.assertEqual(2, len(s)) | |
317 self.assertEqual(4, len(t)) | |
318 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
319 | |
320 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
321 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
322 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
323 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
324 | |
325 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
326 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
327 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
328 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
329 | |
330 self.assertTrue(brainixPatient in p) | |
331 self.assertTrue(kneePatient in p) | |
332 self.assertTrue(brainixStudy in s) | |
333 self.assertTrue(kneeStudy in s) | |
334 self.assertTrue(brainixEpi in t) | |
335 self.assertTrue(brainixFlair in t) | |
336 self.assertTrue(kneeT1 in t) | |
337 self.assertTrue(kneeT2 in t) | |
338 | |
339 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
340 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
341 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
342 | |
343 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
344 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
345 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
346 | |
347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
348 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
349 | |
350 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
351 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
352 | |
353 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
354 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
355 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
356 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
357 | |
358 for patient in p: | |
359 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
360 self.assertEqual(patient, study['ParentPatient']) | |
361 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
362 self.assertEqual(study['ID'], series['ParentStudy']) | |
211 | 363 self.assertEqual('Unknown', series['Status']) |
6 | 364 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
365 self.assertEqual(series['ID'], instance['ParentSeries']) | |
366 | |
367 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
368 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
369 | |
370 | |
371 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
374 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
375 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
376 self.assertEqual(None, r) | |
377 | |
378 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
379 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
380 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
381 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
382 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
383 self.assertEqual('Study', r['Type']) | |
384 self.assertEqual(kneeStudy, r['ID']) | |
385 | |
386 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
388 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
389 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
390 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
391 self.assertEqual('Series', r['Type']) | |
392 self.assertEqual(kneeT1, r['ID']) | |
393 | |
394 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
396 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
397 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
398 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
399 self.assertEqual(None, r) | |
400 | |
401 DropOrthanc(_REMOTE) | |
402 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
403 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 404 |
213
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405 def test_delete_cascade(self): |
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406 # make sure deleting the last instance of a study deletes the series, study and patient |
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407 |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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409 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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412 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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414 |
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415 DoDelete(_REMOTE, '/instances/%s' % a) |
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416 |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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419 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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420 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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421 |
7 | 422 |
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423 def test_multiframe(self): |
7 | 424 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
425 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
426 | |
427 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
428 self.assertEqual("L", im.mode) | |
429 self.assertEqual(512, im.size[0]) | |
430 self.assertEqual(512, im.size[1]) | |
431 | |
432 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
433 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
434 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
437 | |
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438 |
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439 def test_changes(self): |
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440 # Check emptiness |
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441 c = DoGet(_REMOTE, '/changes') |
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442 self.assertEqual(0, len(c['Changes'])) |
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443 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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444 self.assertTrue(c['Done']) |
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445 c = DoGet(_REMOTE, '/changes?last') |
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446 self.assertEqual(0, len(c['Changes'])) |
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447 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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448 self.assertTrue(c['Done']) |
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449 |
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450 # Add 1 instance |
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451 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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452 c = DoGet(_REMOTE, '/changes') |
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453 begin = c['Last'] |
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454 self.assertEqual(4, len(c['Changes'])) |
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455 self.assertTrue(c['Done']) |
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456 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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457 |
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458 c = DoGet(_REMOTE, '/changes?last') |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin, c['Last']) |
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461 self.assertTrue(c['Done']) |
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462 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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463 self.assertEqual(1, len(c['Changes'])) |
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464 self.assertEqual(begin, c['Last']) |
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465 self.assertTrue(c['Done']) |
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466 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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467 self.assertEqual(1, len(c['Changes'])) |
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468 self.assertEqual(begin - 1, c['Last']) |
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469 self.assertFalse(c['Done']) |
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470 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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471 self.assertEqual(1, len(c['Changes'])) |
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472 self.assertEqual(begin - 2, c['Last']) |
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473 self.assertFalse(c['Done']) |
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474 |
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475 UploadFolder(_REMOTE, 'Knee/T1') |
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476 UploadFolder(_REMOTE, 'Knee/T2') |
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477 since = begin |
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478 countPatients = 0 |
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479 countStudies = 0 |
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480 countSeries = 0 |
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481 countInstances = 0 |
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482 completed = 0 |
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483 while True: |
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484 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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485 since = c['Last'] |
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486 for i in c['Changes']: |
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487 if i['ResourceType'] == 'Instance': |
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488 countInstances += 1 |
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489 if i['ResourceType'] == 'Patient': |
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490 countPatients += 1 |
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491 if i['ResourceType'] == 'Study': |
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492 countStudies += 1 |
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493 if i['ResourceType'] == 'Series': |
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494 countSeries += 1 |
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495 if i['ChangeType'] == 'NewInstance': |
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496 countInstances += 1 |
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497 if i['ChangeType'] == 'NewPatient': |
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498 countPatients += 1 |
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499 if i['ChangeType'] == 'NewStudy': |
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500 countStudies += 1 |
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501 if i['ChangeType'] == 'NewSeries': |
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502 countSeries += 1 |
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503 if i['ChangeType'] == 'CompletedSeries': |
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504 completed += 1 |
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505 self.assertTrue('ID' in i) |
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506 self.assertTrue('Path' in i) |
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507 self.assertTrue('Seq' in i) |
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508 if c['Done']: |
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509 break |
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510 |
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511 self.assertEqual(2 * 50, countInstances) |
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512 self.assertEqual(2 * 1, countPatients) |
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513 self.assertEqual(2 * 1, countStudies) |
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514 self.assertEqual(2 * 2, countSeries) |
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515 self.assertEqual(0, completed) |
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516 |
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517 |
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518 def test_archive(self): |
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519 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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520 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 521 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
522 | |
523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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524 self.assertEqual(2, len(z.namelist())) |
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525 |
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526 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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527 self.assertEqual(2, len(z.namelist())) |
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528 |
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529 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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530 self.assertEqual(1, len(z.namelist())) |
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531 |
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532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 533 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
534 | |
535 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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536 self.assertEqual(2, len(z.namelist())) |
192 | 537 |
538 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
539 'Resources' : [ brainix, knee ] | |
540 }) | |
541 self.assertEqual(3, len(z.namelist())) | |
542 | |
8
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543 |
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544 def test_media_archive(self): |
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545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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547 |
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548 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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549 self.assertEqual(3, len(z.namelist())) |
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550 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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551 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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552 self.assertTrue('DICOMDIR' in z.namelist()) |
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553 |
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554 try: |
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555 os.remove('/tmp/DICOMDIR') |
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|
556 except: |
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557 # The file does not exist |
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558 pass |
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559 |
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560 z.extract('DICOMDIR', '/tmp') |
45 | 561 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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562 stderr = subprocess.STDOUT).split('\n') |
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563 self.assertEqual(3, len(a)) |
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564 self.assertTrue(a[0].startswith('Warning')) |
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565 self.assertEqual('BasicDirectory', a[1]) |
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566 self.assertEqual('', a[2]) |
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567 |
45 | 568 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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569 stderr = subprocess.STDOUT).split('\n') |
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570 self.assertEqual(1, len(a)) |
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571 self.assertEqual('', a[0]) |
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572 |
45 | 573 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
8
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574 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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575 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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576 |
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577 os.remove('/tmp/DICOMDIR') |
10 | 578 |
579 | |
580 def test_protection(self): | |
581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
582 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
583 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
584 a = DoGet(_REMOTE, '/patients')[0] | |
585 b = DoGet(_REMOTE, '/patients')[1] | |
586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
587 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
588 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
589 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
590 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
591 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
592 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
593 | |
594 | |
12 | 595 def test_raw_tags(self): |
10 | 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
597 | |
598 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
599 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
600 | |
601 s = '/instances/%s/content/' % i | |
602 | |
603 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
604 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
605 | |
606 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
607 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
608 | |
609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
610 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
612 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
613 | |
614 for i in DoGet(_REMOTE, '/instances'): | |
615 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
616 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
617 | |
618 | |
619 def test_raw_tags_mdn(self): | |
620 # Bug reported by Cyril Paulus | |
621 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
622 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
623 | |
624 | |
625 def test_modify_instance(self): | |
626 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
627 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
628 json.dumps({ | |
629 "Replace" : { | |
630 "PatientName" : "hello", | |
631 #"PatientID" : "world" | |
632 }, | |
633 "Remove" : [ "StationName" ], | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
634 "RemovePrivateTags" : True |
10 | 635 }), |
636 'application/json') | |
637 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
638 | |
639 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
640 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 641 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 642 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
643 | |
644 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
645 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
648 | |
649 | |
650 def test_modify_series(self): | |
651 # Upload 4 images from the same series | |
652 for i in range(4): | |
653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
654 | |
655 origSeries = DoGet(_REMOTE, '/series')[0] | |
656 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
657 '{"Replace":{"PatientName":"Jodogne"}}', | |
658 'application/json')['ID'] | |
659 | |
660 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
661 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
662 self.assertEqual(4, len(instances)) | |
663 for i in instances: | |
664 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
665 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
666 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
667 | |
668 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
669 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
670 | |
671 | |
672 def test_modify_study(self): | |
673 # Upload 4 images from the 2 series of the same study | |
674 for i in range(4): | |
675 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
676 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
677 | |
678 origStudy = DoGet(_REMOTE, '/studies')[0] | |
679 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
680 '{"Replace":{"PatientName":"Jodogne"}}', | |
681 'application/json')['ID'] | |
682 | |
683 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
684 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
685 self.assertEqual(2, len(series)) | |
686 for s in series: | |
687 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
688 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
689 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
690 | |
691 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
692 for i in instances: | |
693 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
694 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
695 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
696 | |
697 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
698 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
699 | |
700 | |
701 def test_anonymize_series(self): | |
702 # Upload 4 images from the same series | |
703 for i in range(4): | |
704 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
705 | |
706 origSeries = DoGet(_REMOTE, '/series')[0] | |
707 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
708 '{}', | |
709 'application/json')['ID'] | |
710 | |
711 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
712 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
713 self.assertEqual(4, len(instances)) | |
714 for i in instances: | |
715 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
716 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
717 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
718 | |
719 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
721 | |
722 | |
723 def test_anonymize_study(self): | |
724 # Upload 4 images from the 2 series of the same study | |
725 for i in range(4): | |
726 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
728 | |
729 origStudy = DoGet(_REMOTE, '/studies')[0] | |
730 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
731 '{"Replace":{"PatientName":"Jodogne"}}', | |
732 'application/json')['ID'] | |
733 | |
734 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
735 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
736 self.assertEqual(2, len(series)) | |
737 for s in series: | |
738 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
739 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
740 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
741 | |
742 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
743 for i in instances: | |
744 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
745 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
746 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
747 | |
748 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
749 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 750 |
751 | |
752 | |
753 def test_storescu(self): | |
754 # Check emptiness | |
755 e = DoGet(_REMOTE, '/exports') | |
756 self.assertEqual(0, len(e['Exports'])) | |
757 self.assertEqual(0, e['Last']) | |
758 self.assertTrue(e['Done']) | |
759 e = DoGet(_REMOTE, '/exports?last') | |
760 self.assertEqual(0, len(e['Exports'])) | |
761 self.assertEqual(0, e['Last']) | |
762 self.assertTrue(e['Done']) | |
763 | |
764 # Add 1 instance | |
765 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
766 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
767 | |
768 # Export the instance | |
769 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
770 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
771 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
772 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
773 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
774 | |
775 e = DoGet(_REMOTE, '/exports') | |
776 self.assertEqual(1, len(e['Exports'])) | |
777 self.assertTrue(e['Done']) | |
778 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
779 e = DoGet(_REMOTE, '/exports?limit=1') | |
780 self.assertEqual(1, len(e['Exports'])) | |
781 self.assertTrue(e['Done']) | |
782 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
783 e = DoGet(_REMOTE, '/exports?last') | |
784 self.assertEqual(1, len(e['Exports'])) | |
785 self.assertTrue(e['Done']) | |
786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
787 seqInstance = e['Last'] | |
788 | |
789 # Export the series | |
790 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
791 | |
792 e = DoGet(_REMOTE, '/exports') | |
793 self.assertEqual(2, len(e['Exports'])) | |
794 self.assertTrue(e['Done']) | |
795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
796 seqSeries = e['Last'] | |
797 self.assertNotEqual(seqInstance, seqSeries) | |
798 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
799 self.assertEqual(1, len(e['Exports'])) | |
800 self.assertFalse(e['Done']) | |
801 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
803 self.assertEqual(1, len(e['Exports'])) | |
804 self.assertTrue(e['Done']) | |
805 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
806 e = DoGet(_REMOTE, '/exports?last') | |
807 self.assertEqual(1, len(e['Exports'])) | |
808 self.assertTrue(e['Done']) | |
809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
810 | |
811 # Export the study | |
812 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
813 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
814 | |
815 # Export the patient | |
816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
818 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
819 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
820 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
821 | |
822 e = DoGet(_REMOTE, '/exports') | |
823 self.assertEqual(4, len(e['Exports'])) | |
824 self.assertTrue(e['Done']) | |
825 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
826 seqPatient = e['Last'] | |
827 self.assertNotEqual(seqInstance, seqSeries) | |
828 self.assertNotEqual(seqSeries, seqStudy) | |
829 self.assertNotEqual(seqStudy, seqPatient) | |
830 self.assertTrue(seqInstance < seqSeries) | |
831 self.assertTrue(seqSeries < seqStudy) | |
832 self.assertTrue(seqStudy < seqPatient) | |
833 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
834 self.assertEqual(1, len(e['Exports'])) | |
835 self.assertFalse(e['Done']) | |
836 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
837 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
838 self.assertEqual(1, len(e['Exports'])) | |
839 self.assertFalse(e['Done']) | |
840 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
841 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
842 self.assertEqual(1, len(e['Exports'])) | |
843 self.assertFalse(e['Done']) | |
844 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
845 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
846 self.assertEqual(1, len(e['Exports'])) | |
847 self.assertTrue(e['Done']) | |
848 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
849 e = DoGet(_REMOTE, '/exports?last') | |
850 self.assertEqual(1, len(e['Exports'])) | |
851 self.assertTrue(e['Done']) | |
852 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
853 | |
854 | |
855 # Check the content of the logged information | |
856 e = DoGet(_REMOTE, '/exports')['Exports'] | |
857 | |
858 if 'PatientID' in e[0]: | |
859 # Since Orthanc 0.8.6 | |
860 patient = 'PatientID' | |
861 study = 'StudyInstanceUID' | |
862 series = 'SeriesInstanceUID' | |
863 instance = 'SOPInstanceUID' | |
864 else: | |
865 # Up to Orthanc 0.8.5 | |
866 patient = 'PatientId' | |
867 study = 'StudyInstanceUid' | |
868 series = 'SeriesInstanceUid' | |
869 instance = 'SopInstanceUid' | |
870 | |
871 for k in range(4): | |
872 self.assertTrue('Date' in e[k]) | |
873 self.assertTrue('Seq' in e[k]) | |
874 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
875 | |
876 self.assertEqual(10, len(e[0])) | |
877 self.assertEqual('Instance', e[0]['ResourceType']) | |
878 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
879 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
881 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
882 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
883 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
884 | |
885 self.assertEqual(9, len(e[1])) | |
886 self.assertEqual('Series', e[1]['ResourceType']) | |
887 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
888 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
889 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
890 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
891 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
892 | |
893 self.assertEqual(8, len(e[2])) | |
894 self.assertEqual('Study', e[2]['ResourceType']) | |
895 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
896 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
897 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
898 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
899 | |
900 self.assertEqual(7, len(e[3])) | |
901 self.assertEqual('Patient', e[3]['ResourceType']) | |
902 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
903 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
904 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
905 | |
906 DropOrthanc(_REMOTE) | |
907 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
908 | |
909 | |
910 def test_store_peer(self): | |
911 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
912 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
913 | |
914 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
915 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
917 | |
918 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
919 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
920 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
921 | |
922 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
923 | |
924 DropOrthanc(_REMOTE) | |
925 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
926 | |
927 | |
928 def test_bulk_storescu(self): | |
929 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
930 | |
931 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
932 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
933 | |
934 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
935 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
936 | |
937 DropOrthanc(_LOCAL) | |
938 | |
939 # Send using patient's UUID | |
940 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
941 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
942 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
943 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
944 | |
945 | |
946 def test_color(self): | |
947 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
948 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
949 self.assertEqual("RGB", im.mode) | |
950 self.assertEqual(41, im.size[0]) | |
951 self.assertEqual(41, im.size[1]) | |
952 | |
953 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 954 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 955 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
956 | |
957 | |
12 | 958 def test_faking_ruby_put(self): |
959 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
960 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
962 a = DoGet(_REMOTE, '/patients')[0] | |
963 b = DoGet(_REMOTE, '/patients')[1] | |
964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
968 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
969 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
970 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
971 | |
972 | |
973 def test_faking_ruby_delete(self): | |
974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
977 a = DoGet(_REMOTE, '/patients')[0] | |
978 b = DoGet(_REMOTE, '/patients')[1] | |
979 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
981 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
983 | |
984 | |
985 def test_faking_google_put(self): | |
986 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
987 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
988 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
989 a = DoGet(_REMOTE, '/patients')[0] | |
990 b = DoGet(_REMOTE, '/patients')[1] | |
991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
993 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
995 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
996 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
997 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
998 | |
999 | |
1000 def test_faking_google_delete(self): | |
1001 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1002 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1003 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1004 a = DoGet(_REMOTE, '/patients')[0] | |
1005 b = DoGet(_REMOTE, '/patients')[1] | |
1006 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1008 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1010 | |
1011 | |
1012 def test_lua(self): | |
1013 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
1014 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
1015 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
1016 | |
1017 | |
1018 def test_metadata(self): | |
1019 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1020 p = DoGet(_REMOTE, '/patients')[0] | |
1021 i = DoGet(_REMOTE, '/instances')[0] | |
1022 | |
1023 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1024 self.assertEqual(1, len(m)) | |
1025 self.assertEqual('LastUpdate', m[0]) | |
1026 | |
1027 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
145 | 1028 self.assertEqual(8, len(m)) |
12 | 1029 self.assertTrue('IndexInSeries' in m) |
1030 self.assertTrue('ReceptionDate' in m) | |
1031 self.assertTrue('RemoteAET' in m) | |
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1032 self.assertTrue('Origin' in m) |
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1033 self.assertTrue('TransferSyntax' in m) |
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1034 self.assertTrue('SopClassUid' in m) |
145 | 1035 self.assertTrue('RemoteIP' in m) |
1036 self.assertTrue('HttpUsername' in m) | |
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1037 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1038 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1039 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1040 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1041 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1042 |
1043 # Play with custom metadata | |
1044 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
1045 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1046 self.assertEqual(2, len(m)) | |
1047 self.assertTrue('LastUpdate' in m) | |
1048 self.assertTrue('5555' in m) | |
1049 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1050 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
1051 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1052 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
1053 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1054 self.assertEqual(1, len(m)) | |
1055 self.assertTrue('LastUpdate' in m) | |
13 | 1056 |
1057 | |
1058 def test_statistics(self): | |
1059 # Upload 16 instances | |
1060 for i in range(4): | |
1061 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1062 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1063 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1064 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1065 | |
1066 s = DoGet(_REMOTE, '/statistics') | |
1067 self.assertEqual(16, s['CountInstances']) | |
1068 self.assertEqual(2, s['CountPatients']) | |
1069 self.assertEqual(2, s['CountStudies']) | |
1070 self.assertEqual(4, s['CountSeries']) | |
1071 d = int(s['TotalUncompressedSize']) | |
1072 | |
1073 e = 0 | |
1074 for patient in DoGet(_REMOTE, '/patients'): | |
1075 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1076 self.assertEqual(8, s['CountInstances']) | |
1077 self.assertEqual(1, s['CountStudies']) | |
1078 self.assertEqual(2, s['CountSeries']) | |
1079 e += int(s['UncompressedSize']) | |
1080 | |
1081 for study in DoGet(_REMOTE, '/studies'): | |
1082 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1083 self.assertEqual(8, s['CountInstances']) | |
1084 self.assertEqual(2, s['CountSeries']) | |
1085 e += int(s['UncompressedSize']) | |
1086 | |
1087 for series in DoGet(_REMOTE, '/series'): | |
1088 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1089 self.assertEqual(4, s['CountInstances']) | |
1090 e += int(s['UncompressedSize']) | |
1091 | |
1092 self.assertEqual(3 * d, e) | |
1093 | |
1094 | |
1095 def test_custom_attachment(self): | |
1096 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1097 patient = DoGet(_REMOTE, '/patients')[0] | |
1098 instance = DoGet(_REMOTE, '/instances')[0] | |
1099 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1100 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1101 | |
1102 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1103 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1104 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1105 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1106 | |
1107 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1108 hello = 'hellohellohellohellohellohellohellohellohello' | |
1109 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1110 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1111 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1112 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1113 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1114 | |
1115 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1116 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1117 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1118 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1119 size + | |
1120 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1121 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1122 | |
1123 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1124 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1125 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1126 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1127 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1128 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1129 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1130 | |
1131 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1132 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1133 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1134 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1135 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1136 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1137 | |
1138 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1139 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1140 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1141 | |
1142 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1143 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1144 | |
1145 | |
1146 def test_incoming_storescu(self): | |
1147 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1148 subprocess.check_call([ FindExecutable('storescu'), |
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1149 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1150 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1151 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1152 | |
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1153 i = DoGet(_REMOTE, '/instances') |
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1154 self.assertEqual(1, len(i)) |
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1155 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
145 | 1156 self.assertEqual(8, len(m)) |
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1157 self.assertTrue('IndexInSeries' in m) |
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1158 self.assertTrue('ReceptionDate' in m) |
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1159 self.assertTrue('RemoteAET' in m) |
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1160 self.assertTrue('Origin' in m) |
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1161 self.assertTrue('TransferSyntax' in m) |
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1162 self.assertTrue('SopClassUid' in m) |
145 | 1163 self.assertTrue('RemoteIP' in m) |
1164 self.assertTrue('CalledAET' in m) | |
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1165 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1166 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1167 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1168 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1169 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1170 |
13 | 1171 |
1172 def test_incoming_findscu(self): | |
1173 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1174 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1175 | |
1176 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1177 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1178 self.assertEqual(2, len(patientNames)) | |
1179 self.assertTrue('Test Patient BG ' in patientNames) | |
1180 self.assertTrue('Anonymized' in patientNames) | |
1181 | |
1182 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1183 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1184 self.assertEqual(2, len(series)) | |
1185 self.assertTrue('20070208' in series) | |
1186 self.assertTrue('19980312' in series) | |
1187 | |
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1188 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
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1189 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1190 self.assertEqual(1, len(series)) |
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1191 self.assertTrue('19980312' in series) |
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1192 |
13 | 1193 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1194 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1195 self.assertEqual(1, len(series)) | |
1196 | |
1197 # Test the "CaseSentitivePN" flag (false by default) | |
1198 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1199 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1200 self.assertEqual(1, len(series)) | |
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1201 |
70 | 1202 # Test range search (buggy if Orthanc <= 0.9.6) |
1203 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1204 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1205 self.assertEqual(2, len(studies)) | |
1206 self.assertTrue('20070208' in studies) | |
1207 self.assertTrue('19980312' in studies) | |
1208 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1209 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1210 self.assertEqual(1, len(studies)) | |
1211 self.assertTrue('19980312' in studies) | |
1212 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1213 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1214 self.assertEqual(1, len(studies)) | |
1215 self.assertTrue('19980312' in studies) | |
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1216 |
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1217 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1218 # was *not* the case in Orthanc <= 1.7.2 |
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1219 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1220 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1221 self.assertEqual(2, len(instances)) |
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1222 self.assertEqual('ORTHANC', instances[0].strip()) |
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1223 self.assertEqual('ORTHANC', instances[1].strip()) |
13 | 1224 |
1225 | |
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1226 def test_incoming_findscu_2(self): |
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1227 # This test fails if "LookupMode_DatabaseOnly" is used |
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1228 # (sequences are not available in this mode, and only main |
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1229 # DICOM tags are returned) |
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1230 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1231 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1232 |
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1233 # Test returning sequence values (only since Orthanc 0.9.5) |
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1234 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1235 sequences = re.findall('\(0008,2112\)', i) |
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1236 self.assertEqual(1, len(sequences)) |
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1237 |
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1238 # Test returning a non-main DICOM tag, |
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1239 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1240 # "MEDPC" in "ColorTestImageJ.dcm" |
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1241 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1242 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1243 self.assertEqual(1, len(tags)) |
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1244 |
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1245 |
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1246 def test_incoming_findscu_3(self): |
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1247 # This test fails if "LookupMode_DatabaseOnly" or |
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1248 # "LookupMode_DiskOnAnswer" is used, as |
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1249 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1250 # tag, as thus a constraint cannot be applied to it |
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1251 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1252 |
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1253 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1254 sequences = re.findall('\(0018,1010\)', i) |
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1255 self.assertEqual(1, len(sequences)) |
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1256 |
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1257 |
13 | 1258 def test_incoming_movescu(self): |
1259 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
137
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1260 |
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1261 # No matching patient, so no job is created |
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1262 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1263 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1264 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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1265 |
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1266 # 1 Matching patient, track the job |
138 | 1267 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1268 '--patient', | |
1269 '-k', '0008,0052=PATIENT', | |
1270 '-k', 'PatientID=12345678' | |
1271 ]))) | |
13 | 1272 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1273 | |
1274 | |
1275 def test_findscu(self): | |
1276 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1277 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1278 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1279 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1280 | |
1281 # Test the "find-patient" level | |
1282 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1283 self.assertEqual(1, len(p)) | |
1284 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1285 | |
1286 # Test wildcards constraints. The "LO" value representation | |
1287 # for PatientID is always case-sensitive, but the "PN" for | |
1288 # PatientName might depend on the implementation: | |
1289 # "GenerateConfigurationForTests.py" will force it to be case | |
1290 # insensitive (which was the default until Orthanc 0.8.6). | |
1291 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1292 self.assertEqual(1, len(p)) | |
1293 | |
1294 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1295 self.assertEqual(1, len(p)) | |
1296 | |
1297 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1298 self.assertEqual(1, len(p)) | |
1299 | |
1300 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1301 self.assertEqual(1, len(p)) | |
1302 | |
1303 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1304 self.assertEqual(0, len(p)) | |
1305 | |
1306 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1307 self.assertEqual(0, len(p)) | |
1308 | |
1309 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1310 self.assertEqual(0, len(p)) | |
1311 | |
1312 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1313 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1314 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1315 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1316 | |
1317 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1318 self.assertEqual(2, len(p)) | |
1319 | |
1320 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1321 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1322 self.assertEqual(1, len(s)) | |
1323 self.assertEqual('20070208', s[0]['StudyDate']) | |
1324 | |
1325 # Test range searches | |
1326 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1327 'StudyDate' : '-20070101' }) | |
1328 self.assertEqual(0, len(t)) | |
1329 | |
1330 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1331 'StudyDate' : '20090101-' }) | |
1332 self.assertEqual(0, len(t)) | |
1333 | |
1334 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1335 'StudyDate' : '20070101-' }) | |
1336 self.assertEqual(1, len(t)) | |
1337 | |
1338 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1339 'StudyDate' : '-20090101' }) | |
1340 self.assertEqual(1, len(t)) | |
1341 | |
1342 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1343 'StudyDate' : '20070207-20070207' }) | |
1344 self.assertEqual(0, len(t)) | |
1345 | |
1346 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1347 'StudyDate' : '20070208-20070208' }) | |
1348 self.assertEqual(1, len(t)) | |
1349 | |
1350 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1351 'StudyDate' : '20070209-20070209' }) | |
1352 self.assertEqual(0, len(t)) | |
1353 | |
1354 # Test the ModalitiesInStudy tag | |
1355 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1356 'PatientID' : 'B9uTHKOZ', | |
1357 'ModalitiesInStudy' : 'US' }) | |
1358 self.assertEqual(0, len(t)) | |
1359 | |
1360 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1361 'PatientID' : 'B9uTHKOZ', | |
1362 'ModalitiesInStudy' : 'CT' }) | |
1363 self.assertEqual(1, len(t)) | |
1364 | |
1365 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1366 'PatientID' : 'B9uTHKOZ', | |
1367 'ModalitiesInStudy' : 'US\\CT' }) | |
1368 self.assertEqual(1, len(t)) | |
1369 | |
1370 # Test the "find-series" level | |
1371 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1372 'PatientID' : 'B9uTHKOZ', | |
1373 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1374 self.assertEqual(1, len(t)) | |
1375 | |
1376 # Test "\" separator | |
1377 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1378 'PatientID' : 'B9uTHKOZ', | |
1379 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1380 'Modality' : 'MR\\CT\\US' }) | |
1381 self.assertEqual(1, len(t)) | |
1382 | |
1383 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1384 'PatientID' : 'B9uTHKOZ', | |
1385 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1386 'Modality' : 'MR\\US' }) | |
1387 self.assertEqual(0, len(t)) | |
1388 | |
1389 | |
1390 def test_update_modalities(self): | |
1391 try: | |
1392 DoDelete(_REMOTE, '/modalities/toto') | |
1393 except: | |
1394 pass | |
1395 try: | |
1396 DoDelete(_REMOTE, '/modalities/tata') | |
1397 except: | |
1398 pass | |
1399 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
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1400 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) |
13 | 1401 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) |
116 | 1402 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1403 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1404 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
121
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1405 DoDelete(_REMOTE, '/modalities/tata') |
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1406 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1407 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
182
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1408 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1409 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1410 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1411 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1412 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1413 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1414 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
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1416 # New in Orthanc 1.8.1 |
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1417 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) |
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1418 self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) |
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1419 |
13 | 1420 DoDelete(_REMOTE, '/modalities/toto') |
1421 DoDelete(_REMOTE, '/modalities/tata') | |
1422 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1423 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1424 | |
1425 | |
1426 def test_update_peers(self): | |
1427 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1428 try: | |
1429 DoDelete(_REMOTE, '/peers/toto') | |
1430 except: | |
1431 pass | |
1432 try: | |
1433 DoDelete(_REMOTE, '/peers/tata') | |
1434 except: | |
1435 pass | |
1436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
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1437 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) |
13 | 1438 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) |
214 | 1439 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
1440 'Username': 'user', | |
1441 'Password' : 'pass', | |
1442 'RemoteSelf' : 'self' }) | |
128 | 1443 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1444 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1445 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1446 self.assertEqual('user', peersReadback['tata']['Username']) | |
214 | 1447 |
1448 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
1449 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
1450 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
1451 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
1452 else: | |
1453 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1454 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
1455 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
1456 | |
128 | 1457 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
1458 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1459 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
214 | 1460 |
13 | 1461 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1462 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1463 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1464 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
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1466 # New in Orthanc 1.8.1 |
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1467 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) |
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1468 self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) |
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1469 |
13 | 1470 DoDelete(_REMOTE, '/peers/toto') |
1471 DoDelete(_REMOTE, '/peers/tata') | |
1472 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1473 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1474 | |
1475 | |
1476 def test_mesterhazy_modification(self): | |
1477 # When I modify a series ( eg. curl | |
1478 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1479 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1480 # series is added to a new Study, instead of the existing | |
1481 # Study. Fixed in Orthanc 0.7.5 | |
1482 | |
1483 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1484 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1485 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1486 | |
1487 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1488 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1489 | |
1490 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1491 | |
1492 | |
1493 def test_create(self): | |
1494 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1495 json.dumps({ | |
1496 'PatientName' : 'Jodogne', | |
1497 'Modality' : 'CT', | |
58 | 1498 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1499 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1500 })) | |
1501 | |
1502 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1503 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1504 | |
1505 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1506 self.assertEqual((5, 5), png.size) | |
1507 | |
38 | 1508 j = DoGet(_REMOTE, i['Path']) |
1509 self.assertEqual('Instance', j['Type']) | |
1510 self.assertEqual(j['ID'], i['ID']) | |
1511 | |
13 | 1512 |
1513 def test_pilates(self): | |
1514 # "SCU failed error when accessing orthanc with osirix" by | |
1515 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1516 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1517 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1518 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1519 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1520 | |
1521 | |
1522 def test_shared_tags(self): | |
1523 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1524 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1525 p = DoGet(_REMOTE, '/patients')[0] | |
1526 | |
1527 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1528 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1529 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1530 |
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1531 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1532 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1533 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1534 |
13 | 1535 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1536 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1537 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1538 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1539 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1540 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1541 | |
1542 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1543 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1544 | |
1545 | |
1546 def test_modules(self): | |
1547 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1548 p = DoGet(_REMOTE, '/patients')[0] | |
1549 s = DoGet(_REMOTE, '/studies')[0] | |
1550 t = DoGet(_REMOTE, '/series')[0] | |
1551 | |
1552 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1553 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1554 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1555 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1556 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1557 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1558 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1559 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1560 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1561 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1562 | |
1563 | |
1564 def test_auto_directory(self): | |
1565 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1566 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1567 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1568 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1569 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1570 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1571 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1572 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1573 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1574 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1575 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1576 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1577 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1578 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1579 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1580 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1581 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1582 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1583 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1584 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1585 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1586 |
1587 | |
1588 def test_echo(self): | |
1589 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
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1590 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) |
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1591 |
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1592 # New in Orthanc 1.8.1 |
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1593 DoPost(_REMOTE, '/tools/dicom-echo', [ |
355 | 1594 _REMOTE['DicomAet'], _REMOTE['Server'], _REMOTE['DicomPort'] ]) |
352
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1595 DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) |
13 | 1596 |
353 | 1597 # Use the 'CheckFind' new option in Orthanc 1.8.1 |
1598 DoPost(_REMOTE, '/modalities/self/echo', { 'CheckFind' : True }) | |
1599 DoPost(_REMOTE, '/tools/dicom-echo', { | |
1600 'AET' : _REMOTE['DicomAet'], | |
1601 'Host' : _REMOTE['Server'], | |
1602 'Port' : _REMOTE['DicomPort'], | |
1603 'CheckFind' : True | |
1604 }) | |
1605 | |
13 | 1606 |
1607 def test_xml(self): | |
1608 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1609 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1610 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1611 self.assertEqual(len(items), len(json)) | |
1612 | |
1613 self.assertTrue('dicom-conformance' in json) | |
1614 | |
1615 ok = False | |
1616 for i in items: | |
1617 if i.childNodes[0].data == 'dicom-conformance': | |
1618 ok = True | |
1619 self.assertTrue(ok) | |
1620 | |
1621 | |
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1622 def test_googlecode_issue_16(self): |
13 | 1623 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1624 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1625 self.assertEqual('0018,1063', t) | |
1626 | |
1627 | |
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1628 def test_googlecode_issue_22(self): |
13 | 1629 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1630 a = [ | |
1631 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1632 "c69eee9a51eea3e8611e82e578897254", | |
1633 "315666be83e2d0111c77bc0996d84901", | |
1634 "3e27aa959d911172c48a1436443c72b1", | |
1635 "958642c9e7e9d232d3869faff546058c", | |
1636 "5e7ea8e3e4230cae707d143481355c59", | |
1637 "eda37f83558d858a596175aed8b2ad47", | |
1638 "486713bd2895c4ecbe0e97715ac7f80a", | |
1639 "091ef729eb169e67da8a0faa9631f9a8", | |
1640 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1641 "e2f39e85896fe58876654b94cd0b5013", | |
1642 "6fd2129e4950abbe1be053bc814d5da8", | |
1643 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1644 "746f808582156734dd6b6fdfd3a0b72c", | |
1645 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1646 "806b8b3e300c615099c11a5ec23465aa", | |
1647 "7c836aa298ba6eef96434579af631a11", | |
1648 "a0357dc9f4f72d73a885c33d7c287446", | |
1649 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1650 "8b114c526b8cbed6cad8a3248b7b480c", | |
1651 "44e6670f127e612a2b4aa60a0d207698", | |
1652 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1653 "95c796c2fa8f59018b15cf2987b1f79b", | |
1654 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1655 ] | |
1656 | |
1657 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1658 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1659 | |
1660 for i in range(len(a)): | |
1661 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1662 | |
1663 | |
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1664 def test_googlecode_issue_19(self): |
21
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1665 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1666 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1667 | |
1668 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
304 | 1669 if not HasGdcmPlugin(_REMOTE): |
299
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1670 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1671 |
1672 | |
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1673 def test_googlecode_issue_37(self): |
13 | 1674 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1675 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1676 | |
1677 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1678 'CaseSensitive' : True, | |
1679 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1680 self.assertEqual(1, len(a)) | |
14 | 1681 |
1682 | |
1683 def test_rest_find(self): | |
1684 # Upload 8 instances | |
1685 for i in range(2): | |
1686 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1687 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1688 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1689 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1690 | |
1691 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1692 'CaseSensitive' : False, | |
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1693 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1694 self.assertEqual(1, len(a)) |
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1695 |
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1696 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1697 'CaseSensitive' : False, |
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1698 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1699 self.assertEqual(2, len(a)) |
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1700 |
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1701 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1702 'CaseSensitive' : False, |
14 | 1703 'Query' : { 'PatientName' : '*n*' }}) |
1704 self.assertEqual(2, len(a)) | |
1705 | |
1706 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1707 'CaseSensitive' : True, | |
1708 'Query' : { 'PatientName' : '*n*' }}) | |
1709 self.assertEqual(0, len(a)) | |
1710 | |
1711 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1712 'Level' : 'Patient', | |
1713 'CaseSensitive' : False, | |
1714 'Query' : { 'PatientName' : '*ne*' }}) | |
1715 self.assertEqual(1, len(a)) | |
1716 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1717 | |
1718 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1719 'CaseSensitive' : True, | |
1720 'Query' : { 'PatientName' : '*ne*' }}) | |
1721 self.assertEqual(0, len(a)) | |
1722 | |
1723 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1724 'CaseSensitive' : True, | |
1725 'Query' : { 'PatientName' : '*NE*' }}) | |
1726 self.assertEqual(1, len(a)) | |
1727 | |
1728 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1729 'CaseSensitive' : True, | |
1730 'Query' : { 'PatientName' : '*NE*' }}) | |
1731 self.assertEqual(2, len(a)) | |
1732 | |
1733 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1734 'CaseSensitive' : True, | |
1735 'Query' : { 'PatientName' : '*NE*' }}) | |
1736 self.assertEqual(4, len(a)) | |
1737 | |
1738 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1739 self.assertEqual(2, len(a)) | |
1740 | |
1741 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1742 self.assertEqual(2, len(a)) | |
1743 | |
1744 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1745 self.assertEqual(4, len(a)) | |
1746 | |
1747 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1748 self.assertEqual(8, len(a)) | |
1749 | |
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1750 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1751 'Expand' : True, |
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1752 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1753 self.assertEqual(1, len(a)) |
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1754 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1755 |
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1756 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1757 'Expand' : True, |
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1758 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1759 self.assertEqual(2, len(a)) |
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1760 for i in range(2): |
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1761 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1762 |
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1763 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1764 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1765 self.assertEqual(0, len(a)) |
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1766 |
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1767 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1768 'Expand' : True, |
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1769 'Query' : { 'StudyDate' : '-20061201' }}) |
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1770 self.assertEqual(1, len(a)) |
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1771 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1772 |
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1773 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1774 'Expand' : True, |
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1775 'Query' : { 'StudyDate' : '-20051201' }}) |
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1776 self.assertEqual(0, len(a)) |
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1777 |
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1778 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1779 'Expand' : True, |
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1780 'Query' : { 'StudyDate' : '20061201-' }}) |
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1781 self.assertEqual(2, len(a)) |
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1782 for i in range(2): |
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1783 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1784 |
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1785 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1786 'Expand' : True, |
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1787 'Query' : { 'StudyDate' : '20061202-' }}) |
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1788 self.assertEqual(1, len(a)) |
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1789 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1790 |
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1791 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1792 'Expand' : True, |
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1793 'Query' : { 'StudyDate' : '20080819-' }}) |
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1794 self.assertEqual(1, len(a)) |
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1795 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1796 |
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1797 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1798 'Expand' : True, |
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1799 'Query' : { 'StudyDate' : '20080820-' }}) |
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1800 self.assertEqual(0, len(a)) |
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1801 |
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1802 |
14 | 1803 |
1804 def test_rest_query_retrieve(self): | |
1805 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1806 | |
1807 # Upload 8 instances | |
1808 for i in range(2): | |
1809 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1810 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1811 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1812 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1813 | |
1814 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1815 for p in DoGet(_REMOTE, '/patients'): | |
1816 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1817 DoDelete(_REMOTE, '/patients/%s' % p) | |
1818 | |
1819 for q in DoGet(_REMOTE, '/queries'): | |
1820 DoDelete(_REMOTE, '/queries/%s' % q) | |
1821 | |
1822 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1823 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1824 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1825 'Query' : { |
1826 'PatientName' : '*NE*', | |
1827 'StudyDate' : '*', | |
1828 }})['ID'] | |
14 | 1829 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1830 | |
1831 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1832 self.assertTrue('answers' in b) | |
1833 self.assertTrue('level' in b) | |
1834 self.assertTrue('modality' in b) | |
1835 self.assertTrue('query' in b) | |
1836 self.assertTrue('retrieve' in b) | |
1837 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1838 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1839 | |
1840 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1841 self.assertEqual(2, len(q)) |
14 | 1842 self.assertTrue('PatientName' in q) |
27 | 1843 self.assertTrue('StudyDate' in q) |
14 | 1844 self.assertEqual('*NE*', q['PatientName']) |
27 | 1845 self.assertEqual('*', q['StudyDate']) |
14 | 1846 |
1847 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1848 | |
1849 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1850 self.assertTrue('content' in s) | |
1851 self.assertTrue('retrieve' in s) | |
1852 | |
1853 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1854 self.assertEqual('887', s['PatientID']) | |
1855 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1856 | |
1857 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1858 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1859 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1860 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1861 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1862 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1863 | |
112 | 1864 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1865 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1866 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1867 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1868 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1869 | |
186
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1870 # New in Orthanc 1.4.3 |
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1871 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1872 self.assertEqual(2, len(s)) |
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1873 for i in range(2): |
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1874 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1875 self.assertEqual('887', s[i]['PatientID']) |
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1876 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1877 |
14 | 1878 DoDelete(_REMOTE, '/queries/%s' % a) |
1879 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1880 | |
1881 | |
1882 def test_parent(self): | |
1883 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1884 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1885 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1886 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1887 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1888 self.assertEqual(instance, u) |
14 | 1889 |
1890 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1891 self.assertEqual('Patient', a['Type']) | |
1892 self.assertEqual(patient, a['ID']) | |
1893 | |
1894 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1895 self.assertEqual('Patient', a['Type']) | |
1896 self.assertEqual(patient, a['ID']) | |
1897 | |
1898 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1899 self.assertEqual('Study', a['Type']) | |
1900 self.assertEqual(study, a['ID']) | |
1901 | |
1902 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1903 self.assertEqual('Patient', a['Type']) | |
1904 self.assertEqual(patient, a['ID']) | |
1905 | |
1906 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1907 self.assertEqual('Study', a['Type']) | |
1908 self.assertEqual(study, a['ID']) | |
1909 | |
1910 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1911 self.assertEqual('Series', a['Type']) | |
1912 self.assertEqual(series, a['ID']) | |
1913 | |
1914 | |
1915 def test_shanon(self): | |
1916 def Anonymize(instance, replacements = {}): | |
119 | 1917 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1918 'Replace' : replacements, | |
1919 'Force' : True, | |
1920 }, 'application/json') | |
14 | 1921 |
1922 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1923 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1924 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1925 | |
1926 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1927 ids = [ 'ozp00SjY2xG', | |
1928 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1929 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1930 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1931 | |
1932 a = ExtractDicomTags(Anonymize(u), tags) | |
1933 for i in range(4): | |
1934 self.assertNotEqual(ids[i], a[i]) | |
1935 self.assertTrue(a[4].startswith('Orthanc')) | |
1936 | |
1937 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1938 for i in range(4): | |
1939 self.assertNotEqual(ids[i], a[i]) | |
1940 self.assertFalse(a[4].startswith('Orthanc')) | |
1941 | |
1942 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1943 self.assertEqual('instance', a[3]) | |
1944 self.assertFalse(a[4].startswith('Orthanc')) | |
1945 | |
1946 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1947 self.assertEqual('series', a[2]) | |
1948 self.assertFalse(a[4].startswith('Orthanc')) | |
1949 | |
1950 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1951 self.assertEqual('study', a[1]) | |
1952 self.assertFalse(a[4].startswith('Orthanc')) | |
1953 | |
1954 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1955 self.assertEqual('patient', a[0]) | |
1956 self.assertFalse(a[4].startswith('Orthanc')) | |
1957 | |
1958 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1959 'StudyInstanceUID' : 'study', | |
1960 'SeriesInstanceUID' : 'series', | |
1961 'SOPInstanceUID' : 'instance' }), tags) | |
1962 self.assertEqual('patient', a[0]) | |
1963 self.assertFalse(a[4].startswith('Orthanc')) | |
1964 | |
1965 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1966 | |
1967 | |
1968 def test_shanon_2(self): | |
1969 def Modify(instance, replacements = {}): | |
119 | 1970 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1971 'Replace' : replacements, | |
1972 'Force': True, | |
1973 }, 'application/json') | |
14 | 1974 |
1975 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1976 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1977 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1978 | |
1979 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1980 ids = [ 'ozp00SjY2xG', | |
1981 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1982 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1983 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1984 | |
1985 a = ExtractDicomTags(Modify(u), tags) | |
1986 self.assertEqual(ids[0], a[0]) | |
1987 self.assertEqual(ids[1], a[1]) | |
1988 self.assertEqual(ids[2], a[2]) | |
1989 self.assertNotEqual(ids[3], a[3]) | |
1990 self.assertEqual(0, len(a[4])) | |
1991 | |
1992 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1993 self.assertEqual(ids[0], a[0]) | |
1994 self.assertEqual(ids[1], a[1]) | |
1995 self.assertEqual(ids[2], a[2]) | |
1996 self.assertEqual('instance', a[3]) | |
1997 | |
1998 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1999 self.assertEqual(ids[0], a[0]) | |
2000 self.assertEqual(ids[1], a[1]) | |
2001 self.assertEqual('series', a[2]) | |
2002 self.assertNotEqual(ids[3], a[3]) | |
2003 | |
2004 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
2005 self.assertEqual(ids[0], a[0]) | |
2006 self.assertEqual('study', a[1]) | |
2007 self.assertNotEqual(ids[2], a[2]) | |
2008 self.assertNotEqual(ids[3], a[3]) | |
2009 | |
2010 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
2011 self.assertEqual('patient', a[0]) | |
2012 self.assertNotEqual(ids[1], a[1]) | |
2013 self.assertNotEqual(ids[2], a[2]) | |
2014 self.assertNotEqual(ids[3], a[3]) | |
2015 | |
2016 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
2017 'StudyInstanceUID' : 'study', | |
2018 'SeriesInstanceUID' : 'series', | |
2019 'SOPInstanceUID' : 'instance' }), tags) | |
2020 self.assertEqual('patient', a[0]) | |
2021 self.assertEqual('study', a[1]) | |
2022 self.assertEqual('series', a[2]) | |
2023 self.assertEqual('instance', a[3]) | |
2024 | |
2025 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2026 | |
2027 | |
2028 def test_instances_tags(self): | |
2029 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
2030 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
2031 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
2032 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
2033 | |
2034 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
2035 self.assertEqual(2, len(i)) | |
2036 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2037 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2038 | |
2039 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
2040 self.assertEqual(2, len(i)) | |
2041 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2042 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2043 | |
2044 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2045 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
2046 self.assertEqual(1, len(i)) | |
2047 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2048 | |
2049 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
2050 self.assertEqual(1, len(i)) | |
2051 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2052 | |
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2053 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2054 self.assertEqual(1, len(i)) |
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2055 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2056 |
14 | 2057 |
2058 def test_lookup(self): | |
2059 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2060 self.assertEqual(0, len(a)) | |
2061 | |
2062 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
2063 | |
2064 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2065 self.assertEqual(1, len(a)) | |
2066 self.assertEqual('Patient', a[0]['Type']) | |
2067 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
2068 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
2069 | |
2070 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
2071 self.assertEqual(1, len(a)) | |
2072 self.assertEqual('Study', a[0]['Type']) | |
2073 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
2074 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
2075 | |
2076 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
2077 self.assertEqual(1, len(a)) | |
2078 self.assertEqual('Series', a[0]['Type']) | |
2079 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
2080 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
2081 | |
2082 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
2083 self.assertEqual(1, len(a)) | |
2084 self.assertEqual('Instance', a[0]['Type']) | |
2085 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
2086 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
2087 | |
2088 DropOrthanc(_REMOTE) | |
2089 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
2090 self.assertEqual(0, len(a)) | |
2091 | |
15 | 2092 |
2093 def test_autorouting(self): | |
2094 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
2095 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
2096 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
2097 | |
2098 # Check that this version is >= 0.8.0 | |
2099 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
2100 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
2101 | |
2102 UploadInstance(_REMOTE, knee1) | |
2103 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2104 | |
2105 DropOrthanc(_REMOTE) | |
2106 DropOrthanc(_LOCAL) | |
174 | 2107 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 2108 UploadInstance(_REMOTE, knee1) |
2109 UploadInstance(_REMOTE, knee2) | |
2110 UploadInstance(_REMOTE, other) | |
2111 WaitEmpty(_REMOTE) | |
174 | 2112 UninstallLuaCallbacks(_REMOTE) |
15 | 2113 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
2114 | |
2115 DropOrthanc(_REMOTE) | |
2116 DropOrthanc(_LOCAL) | |
174 | 2117 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 2118 UploadInstance(_REMOTE, knee1) |
2119 UploadInstance(_REMOTE, knee2) | |
2120 UploadInstance(_REMOTE, other) | |
2121 WaitEmpty(_REMOTE) | |
174 | 2122 UninstallLuaCallbacks(_REMOTE) |
15 | 2123 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
2124 | |
2125 DropOrthanc(_REMOTE) | |
2126 DropOrthanc(_LOCAL) | |
174 | 2127 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 2128 UploadInstance(_REMOTE, knee1) |
2129 WaitEmpty(_REMOTE) | |
174 | 2130 UninstallLuaCallbacks(_REMOTE) |
15 | 2131 i = DoGet(_LOCAL, '/instances') |
2132 self.assertEqual(1, len(i)) | |
2133 | |
2134 with tempfile.NamedTemporaryFile(delete = True) as f: | |
2135 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
2136 f.flush() | |
45 | 2137 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 2138 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
2139 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
2140 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 2141 |
2142 | |
2143 def test_storescu_rf(self): | |
2144 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2145 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2146 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2147 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2148 |
2149 | |
2150 def test_anonymize_instance(self): | |
2151 def AnonymizeAndUpload(instanceId, parameters): | |
2152 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2153 'application/json'), 'application/dicom')['ID'] | |
2154 | |
2155 def ModifyAndUpload(instanceId, parameters): | |
2156 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2157 'application/json'), 'application/dicom')['ID'] | |
2158 | |
2159 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2160 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2161 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2162 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2163 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2164 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2165 | |
2166 b = AnonymizeAndUpload(a, '{}') | |
2167 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2168 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2169 | |
2170 # Keep private tag (only OK since Orthanc 0.8.0) | |
2171 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2172 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2173 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2174 | |
2175 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2176 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2177 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2178 | |
2179 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2180 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2181 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2182 | |
2183 # Examples from the Wiki | |
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2184 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2185 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2186 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2187 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2188 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2189 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2190 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2191 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2192 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2193 | |
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2194 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2195 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2196 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2197 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2198 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2199 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2200 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2201 | |
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2202 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2203 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2204 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2205 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2206 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2207 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2208 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2209 | |
2210 | |
2211 # Test modify non-existing | |
2212 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2213 json.dumps({ | |
2214 'PatientName' : 'Jodogne', | |
2215 'Modality' : 'CT', | |
2216 }))['ID'] | |
2217 | |
2218 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2219 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2220 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2221 | |
2222 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2223 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2224 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2225 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2226 | |
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2227 |
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2228 def test_incoming_jpeg(self): |
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2229 def storescu(image, acceptUnknownSopClassUid): |
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2230 if acceptUnknownSopClassUid: |
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2231 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2232 else: |
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2233 tmp = [ '-xs' ] |
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2234 |
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2235 with open(os.devnull, 'w') as FNULL: |
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2236 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2237 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2238 GetDatabasePath(image) ], |
21
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2239 stderr = FNULL) |
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2240 |
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2241 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2242 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
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2243 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2244 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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2245 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2246 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
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2247 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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2248 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2249 storescu('UnknownSopClassUid.dcm', True) |
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2250 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2251 |
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2252 |
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2253 def test_storescu_jpeg(self): |
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2254 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2255 |
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2256 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2257 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2258 | |
2259 # This is JPEG lossless | |
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2260 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2261 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2262 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2263 |
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2264 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2265 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2266 |
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2267 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2268 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2269 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2270 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2271 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2272 |
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2273 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2274 |
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2275 DropOrthanc(_REMOTE) |
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2276 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2277 |
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2278 |
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2279 def test_pixel_data(self): |
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2280 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2281 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2282 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2283 |
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2284 phenixSize = 358 * 512 * 2 |
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2285 colorSize = 1000 * 1000 * 3 |
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2286 jpegSize = 51918 |
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2287 |
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2288 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2289 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2290 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2291 |
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2292 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2293 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2294 |
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2295 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2296 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2297 |
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diff
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|
2298 |
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|
2299 def test_decode_brainix(self): |
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|
2300 brainix = [ |
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|
2301 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2302 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2303 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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|
2304 ] |
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diff
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|
2305 h = '6fb11b932d535c2be04beabd99793ff8' |
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2306 maxValue = 426.0 |
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|
2307 |
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diff
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2308 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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diff
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|
2309 for i in brainix: |
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diff
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|
2310 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2311 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2312 |
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2313 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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|
2314 for i in brainix: |
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2315 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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|
2316 |
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diff
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|
2317 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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diff
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|
2318 for i in brainix: |
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diff
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2319 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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|
2320 |
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changeset
|
2321 for i in brainix: |
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2322 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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|
2323 |
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|
2324 |
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|
2325 def test_decode_color(self): |
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2326 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2327 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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|
2328 |
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|
2329 for i in [ imagej, color ]: |
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parents:
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|
2330 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2331 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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|
2332 |
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2333 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2334 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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|
2335 |
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2336 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2337 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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|
2338 |
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|
2339 |
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|
2340 def test_decode_rf(self): |
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2341 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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|
2342 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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|
2343 |
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|
2344 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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|
2345 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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|
2346 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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|
2347 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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|
2348 |
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|
2349 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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|
2350 |
2a29bcff60a7
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|
2351 |
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|
2352 def test_decode_multiframe(self): |
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2353 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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|
2354 |
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2355 # Test the first frame |
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2356 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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18
diff
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|
2357 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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|
2358 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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|
2359 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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|
2360 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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|
2361 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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diff
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|
2362 |
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changeset
|
2363 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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18
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|
2364 |
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|
2365 # Test the last frame |
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18
diff
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|
2366 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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18
diff
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|
2367 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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|
2368 |
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18
diff
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|
2369 |
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|
2370 def test_decode_signed(self): |
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18
diff
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|
2371 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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18
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|
2372 minValue = -2000 |
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18
diff
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|
2373 maxValue = 4042 |
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18
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|
2374 |
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|
2375 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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18
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|
2376 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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|
2377 |
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|
2378 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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2379 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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|
2380 |
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2381 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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|
2382 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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|
2383 |
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|
2384 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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2385 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2386 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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|
2387 |
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2388 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2389 |
2390 | |
46
85b2e36ed392
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|
2391 def test_googlecode_issue_32(self): |
92
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2392 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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2393 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
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2394 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
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2395 |
22 | 2396 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2397 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2398 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2399 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2400 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2401 | |
92
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2402 # Replay the same test using Latin1 as default encoding: This must fail |
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2403 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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2404 |
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2405 DoDelete(_REMOTE, '/instances/%s' % f) |
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2406 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
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2407 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
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|
2408 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
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89
diff
changeset
|
2409 |
314 | 2410 # Back to UTF-8 |
2411 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
2412 | |
92
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
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|
2413 |
22 | 2414 def test_encodings(self): |
23 | 2415 # Latin-1 (ISO_IR 100) |
22 | 2416 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2417 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2418 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2419 |
2420 # Latin-2 (ISO_IR 101) | |
2421 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2422 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2423 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2424 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2425 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2426 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2427 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2428 def test_storescu_custom_aet(self): |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2429 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2430 # setting of the local AET during C-Store SCU (both in Lua and |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2431 # in the REST API)." |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2432 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2433 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2434 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2435 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2436 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2437 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2438 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2439 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2440 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2441 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2442 'Resources' : [ a['ID'], b['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2443 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2444 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2445 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2446 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2447 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2448 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2449 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2450 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2451 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2452 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2453 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2454 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2455 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2456 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2457 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2458 DropOrthanc(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2459 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2460 |
174 | 2461 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2462 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2463 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2464 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2465 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2466 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2467 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2468 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2469 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2470 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2471 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2472 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2473 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2474 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2475 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2476 def test_resources_since_limit(self): |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2477 # Upload 16 instances |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2478 for i in range(4): |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2479 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2480 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2481 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2482 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2483 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2484 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2485 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2486 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2487 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2488 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2489 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2490 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2491 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2492 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2493 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2494 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2495 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2496 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2497 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2498 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2499 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2500 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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test limit and since arguments while retrieving DICOM resources in the REST API
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28
diff
changeset
|
2501 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2502 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2503 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2504 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2505 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2506 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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diff
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|
2507 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2508 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
2509 s = {} |
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diff
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|
2510 since = 0 |
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diff
changeset
|
2511 while True: |
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diff
changeset
|
2512 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2513 if len(t) == 0: |
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diff
changeset
|
2514 break |
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diff
changeset
|
2515 |
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diff
changeset
|
2516 since += len(t) |
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diff
changeset
|
2517 for i in t: |
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diff
changeset
|
2518 s[i] = None |
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diff
changeset
|
2519 |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2520 self.assertEqual(16, len(s)) |
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2521 for instance in DoGet(_REMOTE, '/instances'): |
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2522 self.assertTrue(instance in s) |
36 | 2523 |
2524 | |
2525 def test_create_pdf(self): | |
2526 # Upload 4 instances | |
2527 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2528 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2529 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2530 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2531 | |
2532 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2533 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2534 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2535 | |
2536 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2537 pdf = f.read() | |
2538 | |
2539 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2540 json.dumps({ | |
2541 'Tags' : { | |
2542 'PatientName' : 'Jodogne', | |
2543 'Modality' : 'CT', | |
2544 }, | |
2545 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2546 })) | |
2547 | |
2548 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2549 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2550 | |
2551 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2552 self.assertEqual(len(b), len(pdf) + 1) | |
2553 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2554 | |
2555 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2556 json.dumps({ | |
2557 'Parent' : brainixPatient, | |
2558 'Tags' : { | |
2559 'PatientName' : 'Jodogne', | |
2560 } | |
2561 }))) | |
2562 | |
2563 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2564 json.dumps({ | |
2565 'Parent' : brainixPatient, | |
2566 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2567 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2568 })) | |
2569 | |
2570 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2571 | |
2572 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2573 json.dumps({ | |
2574 'Parent' : brainixStudy, | |
2575 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2576 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2577 })) | |
2578 | |
2579 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2580 | |
2581 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2582 json.dumps({ | |
2583 'Parent' : brainixEpi, | |
37 | 2584 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2585 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2586 })) | |
2587 | |
2588 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2589 | |
2590 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2591 self.assertEqual(len(b), len(pdf)) | |
2592 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2593 | |
2594 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2595 |
2596 | |
2597 def test_create_series(self): | |
2598 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2599 json.dumps({ | |
2600 'Tags' : { | |
40 | 2601 'SpecificCharacterSet' : 'ISO_IR 100', |
2602 'PatientName' : 'Sébastien Jodogne', | |
38 | 2603 'Modality' : 'CT', |
2604 }, | |
2605 'Content' : [ | |
40 | 2606 { |
2607 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2608 'Tags' : { 'ImageComments' : 'Tutu' } | |
2609 }, | |
38 | 2610 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2611 ] | |
2612 })) | |
2613 | |
2614 s = DoGet(_REMOTE, i['Path']) | |
2615 self.assertEqual('Series', s['Type']) | |
2616 self.assertEqual(s['ID'], i['ID']) | |
2617 self.assertEqual(2, len(s['Instances'])) | |
39 | 2618 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2619 self.assertEqual('Complete', s['Status']) | |
40 | 2620 |
2621 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2622 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2623 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2624 if 'ImageComments' in a: | |
2625 self.assertEqual('Tutu', a['ImageComments']) | |
2626 else: | |
2627 self.assertEqual('Tutu', b['ImageComments']) | |
2628 | |
2629 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2630 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2631 'Sébastien Jodogne') | |
47 | 2632 |
2633 | |
2634 def test_create_binary(self): | |
2635 binary = ''.join(map(chr, range(256))) | |
2636 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2637 tags = { | |
2638 'PatientName' : 'Jodogne', | |
2639 '8899-8899' : encoded | |
2640 } | |
2641 | |
2642 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2643 json.dumps({ | |
266 | 2644 'Tags' : tags, |
2645 'PrivateCreator' : 'TestBinary', | |
47 | 2646 })) |
2647 | |
2648 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2649 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2650 | |
2651 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2652 json.dumps({ | |
2653 'InterpretBinaryTags' : False, | |
266 | 2654 'Tags' : tags, |
2655 'PrivateCreator' : 'TestBinary', | |
47 | 2656 })) |
2657 | |
2658 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2659 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2660 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2661 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2662 def test_patient_ids_collision(self): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2663 # Upload 3 instances from 3 different studies, but with the |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2664 # same PatientID |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2665 for i in range(3): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2666 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2667 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2668 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2669 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2670 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2671 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2672 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2673 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2674 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2675 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2676 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2677 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2678 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2679 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2680 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2681 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2682 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2683 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2684 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2685 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2686 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2687 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2688 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2689 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2690 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2691 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2692 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2693 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2694 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2695 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2696 self.assertEqual('COMMON', d[0]) |
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test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2697 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2698 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2699 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
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test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2700 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2701 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2702 |
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test_bitbucket_issue_4
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parents:
48
diff
changeset
|
2703 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2704 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2705 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2706 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2707 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2708 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2709 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2710 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
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|
2711 |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2712 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2713 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2714 |
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test_bitbucket_issue_4
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parents:
48
diff
changeset
|
2715 p = DoGet(_REMOTE, '/patients') |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2716 self.assertEqual(2, len(p)) |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2717 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2718 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2719 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
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48
diff
changeset
|
2720 self.assertEqual(3, len(i2)) |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2721 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2722 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2723 |
e7f9b8199545
test_bitbucket_issue_4
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48
diff
changeset
|
2724 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
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parents:
49
diff
changeset
|
2725 |
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49
diff
changeset
|
2726 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2727 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2728 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2729 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2730 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2731 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2732 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
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parents:
50
diff
changeset
|
2733 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2734 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2735 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2736 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2737 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2738 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2739 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2740 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2741 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2742 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2743 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2744 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2745 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2746 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2747 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2748 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2749 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2750 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2751 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2752 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2753 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2754 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2755 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2756 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2757 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2758 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2759 |
52 | 2760 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2761 | |
2762 | |
2763 def test_compression(self): | |
2764 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2765 | |
2766 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2767 | |
2768 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2769 # uncompress the data before running the test | |
2770 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2771 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2772 | |
2773 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2774 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2775 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2776 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2777 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2778 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2779 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2780 | |
2781 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2782 self.assertTrue('compress' in ops) | |
2783 self.assertTrue('uncompress' in ops) | |
2784 self.assertTrue('is-compressed' in ops) | |
2785 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2786 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2787 | |
2788 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2789 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2790 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2791 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2792 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2793 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2794 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2795 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2796 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2797 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2798 | |
2799 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2800 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2801 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2802 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2803 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2804 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2805 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2806 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2807 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2808 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2809 |
2810 | |
2811 def test_ordered_slices(self): | |
2812 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2813 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2814 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2815 self.assertEqual('Sequence', o['Type']) | |
2816 self.assertEqual(1, len(o['Dicom'])) | |
2817 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2818 self.assertEqual(76, len(o['Slices'])) | |
2819 for j in range(76): | |
2820 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2821 | |
68 | 2822 self.assertEqual(1, len(o['SlicesShort'])) |
2823 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2824 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2825 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2826 | |
53 | 2827 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2828 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2829 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2830 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2831 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2832 | |
2833 self.assertEqual('Volume', o['Type']) | |
2834 self.assertEqual(3, len(o['Dicom'])) | |
2835 self.assertEqual(3, len(o['Slices'])) | |
2836 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2837 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2838 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2839 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2840 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2841 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2842 | |
68 | 2843 self.assertEqual(3, len(o['SlicesShort'])) |
2844 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2845 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2846 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2847 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2848 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2849 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2850 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2851 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2852 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2853 | |
53 | 2854 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2855 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2856 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2857 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2858 | |
2859 self.assertEqual('Sequence', o['Type']) | |
2860 self.assertEqual(2, len(o['Dicom'])) | |
2861 self.assertEqual(2, len(o['Slices'])) | |
2862 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2863 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2864 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2865 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2866 |
68 | 2867 self.assertEqual(2, len(o['SlicesShort'])) |
2868 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2869 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2870 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2871 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2872 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2873 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2874 | |
2875 | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2876 |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2877 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2878 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
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diff
changeset
|
2879 |
137
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diff
changeset
|
2880 # No matching patient, so no job is created |
54
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2881 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2882 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
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parents:
53
diff
changeset
|
2883 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
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53
diff
changeset
|
2884 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
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53
diff
changeset
|
2885 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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diff
changeset
|
2886 |
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diff
changeset
|
2887 # 1 Matching patient, track the job |
138 | 2888 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
2889 '--study', | |
2890 '-k', '0008,0052=STUDY', | |
2891 '-k', 'AccessionNumber=A10003245599' | |
2892 ]))) | |
137
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diff
changeset
|
2893 |
54
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diff
changeset
|
2894 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
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diff
changeset
|
2895 |
55 | 2896 |
2897 def test_dicom_to_json(self): | |
2898 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
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diff
changeset
|
2899 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
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diff
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|
2900 |
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diff
changeset
|
2901 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
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diff
changeset
|
2902 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
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79
diff
changeset
|
2903 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2904 # Tags for compatibility with DCMTK 3.6.0 |
2905 'RETIRED_OtherPatientIDs', | |
2906 'OtherPatientIDs', | |
2907 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
8466dbfcb22b
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diff
changeset
|
2908 ])) |
55 | 2909 |
2910 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2911 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
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86
diff
changeset
|
2912 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
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diff
changeset
|
2913 ])) |
55 | 2914 |
60
cd3c7f70f139
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diff
changeset
|
2915 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
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diff
changeset
|
2916 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
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changeset
|
2917 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
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|
2918 ])) |
60
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diff
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|
2919 |
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diff
changeset
|
2920 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
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diff
changeset
|
2921 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2922 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2923 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2924 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2925 self.assertEqual(aa, tt) |
57 | 2926 |
2927 | |
2928 def test_batch_archive(self): | |
2929 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2930 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2931 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2932 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2933 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2934 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2935 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2936 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2937 | |
2938 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2939 z = zipfile.ZipFile(StringIO(s), "r") | |
2940 self.assertEqual(0, len(z.namelist())) | |
2941 | |
2942 # One patient | |
2943 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2944 z = zipfile.ZipFile(StringIO(s), "r") | |
2945 self.assertEqual(4, len(z.namelist())) | |
2946 | |
2947 # One patient + twice its study + one series from other patient | |
2948 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2949 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2950 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2951 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2952 ]) | |
2953 z = zipfile.ZipFile(StringIO(s), "r") | |
2954 self.assertEqual(6, len(z.namelist())) | |
2955 | |
2956 # One patient + one series + one instance | |
2957 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2958 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2959 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2960 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2961 ]) | |
2962 z = zipfile.ZipFile(StringIO(s), "r") | |
2963 self.assertEqual(7, len(z.namelist())) | |
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2964 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2965 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2966 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2967 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2968 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2969 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2970 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2971 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2972 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2973 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2974 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2975 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2976 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2977 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2978 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2979 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2980 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2981 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2982 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2983 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2984 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2985 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2986 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2987 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2988 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2989 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2990 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2991 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2992 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2993 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2994 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2995 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2996 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2997 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2998 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2999 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
3000 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3001 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3002 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3003 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3004 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3005 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3006 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3007 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3008 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3009 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3010 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3011 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3012 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3013 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3014 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3015 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3016 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3017 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3018 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3019 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3020 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3021 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3022 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3023 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3024 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3025 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3026 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3027 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3028 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3029 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3030 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3031 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3032 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3033 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3034 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3035 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3036 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3037 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3038 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3039 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3040 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3041 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3042 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3043 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3044 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3045 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3046 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3047 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3048 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3049 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3050 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3051 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3052 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3053 self.assertEqual(1, len(s)) |
48740070cbf1
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3054 self.assertTrue('2 ' in s) |
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3055 |
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|
3056 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
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3057 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
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|
3058 self.assertEqual(1, len(s)) |
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|
3059 self.assertTrue('3 ' in s) |
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|
3060 |
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3061 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
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3062 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
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3063 self.assertEqual(1, len(s)) |
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|
3064 self.assertTrue('2 ' in s) |
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3065 |
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|
3066 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
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3067 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
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changeset
|
3068 self.assertEqual(1, len(s)) |
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diff
changeset
|
3069 self.assertTrue('3 ' in s) |
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|
3070 |
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3071 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
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3072 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
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|
3073 self.assertEqual(2, len(s)) |
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changeset
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3074 self.assertTrue('1 ' in s) |
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changeset
|
3075 self.assertTrue('2 ' in s) |
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3076 |
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|
3077 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
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3078 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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|
3079 self.assertEqual(1, len(s)) |
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3080 t = map(lambda x: x.strip(), s[0].split('\\')) |
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|
3081 self.assertTrue('PT' in t) |
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3082 self.assertTrue('CT' in t) |
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3083 |
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3084 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
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3085 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
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|
3086 self.assertEqual(1, len(s)) |
176
48cc188ffb09
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am@osimis.io
parents:
175
diff
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|
3087 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
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3088 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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3089 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
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3090 |
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3091 |
78
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diff
changeset
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3092 def test_decode_transfer_syntax(self): |
b89af51797ff
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diff
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3093 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
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diff
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3094 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
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3095 |
89
74b7b9aed5f8
test TransferSyntax metadata
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diff
changeset
|
3096 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
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|
3097 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
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test TransferSyntax metadata
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3098 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
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3099 |
78
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3100 if md5 == None: |
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3101 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
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test_decode_transfer_syntax
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3102 else: |
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|
3103 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
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3104 self.assertEqual(m, md5) |
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diff
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|
3105 |
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test_decode_transfer_syntax
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|
3106 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
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test_decode_transfer_syntax
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3107 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
323 | 3108 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
78
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diff
changeset
|
3109 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
test_decode_transfer_syntax
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diff
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|
3110 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
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test_decode_transfer_syntax
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|
3111 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
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3112 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
b89af51797ff
test_decode_transfer_syntax
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|
3113 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
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|
3114 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
test_decode_transfer_syntax
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changeset
|
3115 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
299
c2144cf4bd83
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diff
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|
3116 |
c2144cf4bd83
HasGdcmPlugin() test
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diff
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|
3117 # JPEG2k image, not supported without GDCM plugin |
304 | 3118 if not HasGdcmPlugin(_REMOTE): |
299
c2144cf4bd83
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3119 Check('1.2.840.10008.1.2.4.90', None) |
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|
3120 Check('1.2.840.10008.1.2.4.91', None) |
79 | 3121 |
3122 | |
3123 def test_raw_frame(self): | |
3124 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
3125 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3126 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3127 self.assertEqual(512 * 512 * 2, len(a)) | |
3128 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
3129 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
3130 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
3131 | |
3132 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
3133 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3134 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
3135 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
3136 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
3137 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3138 self.assertEqual("L", im.mode) | |
3139 self.assertEqual(512, im.size[0]) | |
3140 self.assertEqual(512, im.size[1]) | |
3141 | |
3142 # Test an image with 2 JPEG frames spread over multiple fragments | |
3143 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
3144 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3145 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3146 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
3147 self.assertEqual(69214, len(a)) | |
3148 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
3149 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3150 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3151 self.assertEqual("RGB", im.mode) | |
3152 self.assertEqual(512, im.size[0]) | |
3153 self.assertEqual(512, im.size[1]) | |
323 | 3154 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
79 | 3155 self.assertEqual("RGB", im.mode) |
3156 self.assertEqual(512, im.size[0]) | |
3157 self.assertEqual(512, im.size[1]) | |
81 | 3158 |
3159 | |
3160 | |
3161 def test_rest_movescu(self): | |
3162 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3163 | |
3164 # Upload 4 instances | |
3165 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3166 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3167 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3168 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3169 | |
3170 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3171 for p in DoGet(_REMOTE, '/patients'): | |
3172 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3173 DoDelete(_REMOTE, '/patients/%s' % p) | |
3174 | |
3175 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3176 | |
3177 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3178 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3179 'Resources' : [ | |
3180 { | |
3181 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3182 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3183 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3184 } | |
3185 ]}) | |
3186 | |
3187 # Upload series Brainix/Flair/* | |
3188 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3189 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3190 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3191 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3192 | |
3193 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3194 'Resources' : [ | |
3195 { | |
3196 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3197 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3198 } | |
3199 ]}) | |
3200 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3201 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3202 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3203 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3204 | |
3205 # Upload series Brainix/Epi/* | |
3206 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3207 'Resources' : [ | |
3208 { | |
3209 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3210 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3211 } | |
3212 ]}) | |
3213 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3214 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3215 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3216 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3217 | |
3218 # Upload study Knee/* | |
3219 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3220 'Resources' : [ | |
3221 { | |
3222 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3223 } | |
3224 ]}) | |
3225 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3226 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3227 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3228 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3229 | |
3230 # Reset | |
3231 for p in DoGet(_REMOTE, '/patients'): | |
3232 DoDelete(_REMOTE, '/patients/%s' % p) | |
3233 | |
3234 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3235 | |
3236 | |
3237 # Upload all at once | |
3238 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3239 'Resources' : [ | |
3240 { | |
3241 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3242 }, | |
3243 { | |
3244 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3245 } | |
3246 ]}) | |
3247 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3248 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3249 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3250 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3251 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3252 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3253 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3254 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3255 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3256 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3257 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3258 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3259 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3260 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3261 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3262 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3263 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3264 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3265 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3266 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3267 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3268 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3269 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3270 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3271 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3272 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3273 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3274 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3275 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3276 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3277 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3278 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3279 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3280 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3281 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3282 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3283 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3284 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3285 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3286 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3287 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3288 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3289 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3290 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3291 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3292 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3293 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3294 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3295 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3296 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3297 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3298 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3299 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3300 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3301 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3302 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3303 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3304 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3305 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3306 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3307 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3308 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3309 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3310 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3311 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3312 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3313 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3314 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3315 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3346 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3347 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3348 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3349 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3350 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3351 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3352 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3353 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3354 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3355 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3356 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3357 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3358 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3359 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3360 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3361 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3362 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3363 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3364 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3365 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3366 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3367 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3368 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3369 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3370 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3371 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3372 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3373 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3374 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3375 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3376 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3377 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3378 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3379 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3380 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3381 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3382 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3383 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3384 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3385 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3386 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3387 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3388 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3389 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3390 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3391 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3392 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3393 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3394 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3395 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3396 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3397 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3398 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3399 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3400 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3401 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3402 |
314 | 3403 # Back to UTF-8 |
3404 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
3405 | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3406 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3407 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3408 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3409 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3410 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3411 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3412 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3413 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3414 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3415 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3416 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3417 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3418 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3419 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3420 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3421 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3422 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3423 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3424 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3425 }, |
119 | 3426 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3427 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3428 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3429 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3430 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3431 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3432 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3433 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3434 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3435 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3436 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3437 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3438 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3439 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3440 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3441 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3442 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3443 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3444 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3445 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3446 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3447 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3448 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3449 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3450 |
104 | 3451 def test_httpClient_lua(self): |
3452 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3453 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3454 | |
3455 self.assertIn('OK', result) | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3456 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3457 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3458 def test_bitbucket_issue_44(self): |
319 | 3459 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3460 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3461 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3462 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3463 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3464 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3465 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3466 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3467 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3468 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3469 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3470 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3471 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3472 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3473 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3474 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3475 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3476 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3477 self.assertEqual(2010, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3478 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3479 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3480 # This is the chest image, with MONOCHROME1. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3481 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3482 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3483 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3484 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3485 else: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3486 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3487 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3488 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3489 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3490 self.assertEqual(1572, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3491 self.assertEqual(2010, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3492 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3493 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3494 # white (255), should be rendered as white (255) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3495 self.assertEqual(255, im.getpixel((0,0))) |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3496 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3497 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3498 def test_bitbucket_issue_42(self): |
319 | 3499 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
123 | 3500 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3501 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3502 modified = DoPost(_REMOTE, |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3503 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3504 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3505 'application/json') |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3506 self.assertTrue('PatientID' in modified) |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3507 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3508 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3509 def test_rest_find_limit(self): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3510 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
319 | 3511 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3512 |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 # Upload 6 instances |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 brainix = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3515 knee = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3517 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3518 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3519 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3520 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3521 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3522 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3523 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3524 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3525 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3526 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3527 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3528 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3529 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3530 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3531 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3532 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3533 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3534 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3535 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3536 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3537 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3538 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3539 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3540 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3541 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3542 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3543 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3544 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3545 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3546 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3547 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3548 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3549 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3550 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3551 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3552 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3553 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3554 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3555 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3556 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3557 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3558 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3559 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3560 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3561 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3562 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3563 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3564 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3565 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3566 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3567 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3568 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3569 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3570 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3571 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3572 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3573 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3574 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3575 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3576 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3577 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3578 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3579 # "PHI remaining after anonymization" |
319 | 3580 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3581 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3582 def GetAnonymizedTags(study, version): |
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3583 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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diff
changeset
|
3584 { 'DicomVersion' : version }, |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3585 'application/json') ['ID'] |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3586 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3587 self.assertEqual(1, len(a)) |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3588 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3589 instance = a[0]['ID'] |
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3590 |
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3591 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
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3592 |
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3593 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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3594 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
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3595 |
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3596 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
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3597 # (Patient's Mother's Birth Name) tags |
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3598 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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3599 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
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3600 'application/json')['ID'] |
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3601 |
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3602 # Use Table E.1-1 from PS 3.15-2008 |
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3603 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3604 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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3605 self.assertTrue('0032,1033' in tags) |
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3606 self.assertTrue('0010,1060' in tags) |
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|
3607 |
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3608 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
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3609 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3610 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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3611 self.assertFalse('0032,1033' in tags) |
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3612 self.assertFalse('0010,1060' in tags) |
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3613 |
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3614 t = {} |
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3615 for (key, value) in tags.iteritems(): |
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3616 t[value['Name']] = value['Value'] |
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3617 |
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3618 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
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3619 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
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3620 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
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3621 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
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3622 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
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|
3623 |
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3624 with tempfile.NamedTemporaryFile(delete = True) as f: |
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3625 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
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3626 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
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3627 f.flush() |
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3628 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
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|
3629 stderr = subprocess.STDOUT).split('\n') |
118
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|
3630 |
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|
3631 |
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3632 def test_bitbucket_issue_55(self): |
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3633 def Run(modify, query): |
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3634 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3635 |
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|
3636 operation = 'modify' if modify else 'anonymize' |
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|
3637 |
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|
3638 self.assertRaises(Exception, lambda: DoPost( |
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3639 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
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3640 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3641 |
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|
3642 query["Force"] = True |
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3643 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
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3644 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
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3645 DoDelete(_REMOTE, a) |
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|
3646 |
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3647 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3648 |
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|
3649 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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|
3650 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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|
3651 |
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|
3652 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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|
3653 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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|
3654 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3655 |
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|
3656 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
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|
3657 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
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|
3658 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
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|
3659 |
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diff
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|
3660 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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|
3661 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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|
3662 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3663 |
120
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diff
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|
3664 |
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diff
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|
3665 def test_bitbucket_issue_56(self): |
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|
3666 # Case-insensitive matching over accents. This test assumes |
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|
3667 # that the "CaseSensitivePN" configuration option of Orthanc |
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diff
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|
3668 # is set to "false" (default value). |
319 | 3669 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
120
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diff
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|
3670 |
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|
3671 def Check(name, expected, expectedSensitive): |
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|
3672 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
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|
3673 '-k', '0008,0052=PATIENT', |
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|
3674 '-k', 'PatientName=%s' % name ]) |
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|
3675 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
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|
3676 self.assertEqual(expected, len(patientNames)) |
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|
3677 |
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|
3678 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3679 'CaseSensitive' : False, |
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|
3680 'Query' : { 'PatientName' : name }}) |
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|
3681 self.assertEqual(expected, len(a)) |
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|
3682 |
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|
3683 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3684 'CaseSensitive' : True, |
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|
3685 'Query' : { 'PatientName' : name }}) |
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|
3686 self.assertEqual(expectedSensitive, len(a)) |
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|
3687 |
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|
3688 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
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diff
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|
3689 |
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diff
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|
3690 # WildcardConstraint |
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diff
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|
3691 Check('TeSt*', 1, 0) |
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diff
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|
3692 Check('TeSt-a*', 0, 0) |
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diff
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|
3693 Check('TeSt-É*', 1, 0) |
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diff
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|
3694 Check('TeSt-é*', 1, 0) |
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diff
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|
3695 Check('Test-é*', 1, 1) |
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diff
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|
3696 |
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|
3697 # ListConstraint |
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diff
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|
3698 Check('Test-éüäöò\\nope', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3699 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3700 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3701 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3702 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3703 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3704 |
125 | 3705 |
3706 def test_gbk_alias(self): | |
3707 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3708 # This test fails on Orthanc <= 1.3.0 | |
3709 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3710 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3711 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3712 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3713 |
3714 | |
3715 def test_long_tag(self): | |
3716 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3717 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3718 | |
3719 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3720 self.assertTrue('0018,1020' in tags) | |
3721 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3722 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3723 self.assertEqual(None, tags['0018,1020']['Value']) | |
3724 | |
3725 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3726 self.assertTrue('0018,1020' in tags) | |
3727 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3728 self.assertEqual('String', tags['0018,1020']['Type']) | |
3729 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3730 | |
3731 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3732 self.assertTrue('SoftwareVersions' in tags) | |
3733 self.assertEqual(None, tags['SoftwareVersions']) | |
3734 self.assertTrue('HeartRate' in tags) | |
3735 self.assertEqual(474, int(tags['HeartRate'])) | |
3736 | |
3737 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3738 self.assertTrue('SoftwareVersions' in tags) | |
3739 self.assertEqual(None, tags['SoftwareVersions']) | |
3740 | |
3741 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3742 self.assertTrue('SoftwareVersions' in tags) | |
3743 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3744 | |
3745 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3746 self.assertTrue('SoftwareVersions' in tags) | |
3747 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3748 | |
3749 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3750 self.assertEqual(1, len(tags)) | |
3751 self.assertTrue(i in tags.keys()) | |
3752 self.assertTrue('0018,1020' in tags[i]) | |
3753 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3754 | |
3755 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3756 self.assertEqual(1, len(tags)) | |
3757 self.assertTrue(i in tags.keys()) | |
3758 self.assertTrue('0018,1020' in tags[i]) | |
3759 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3760 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3761 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3762 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3763 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3764 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3765 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3766 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3767 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3768 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3769 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3770 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3771 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3772 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3773 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3774 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3775 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3776 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3777 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3778 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3779 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3780 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3781 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3782 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3783 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3784 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3785 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3786 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3787 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3788 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3789 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3790 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3791 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3792 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3793 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3794 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3795 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3796 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3797 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3798 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3799 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3800 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3802 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3803 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3805 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3806 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3807 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3808 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3809 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3810 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3811 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3812 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3813 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3814 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3815 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3816 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3817 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3819 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3820 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3821 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3822 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3823 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3824 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3825 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 DoGet(_REMOTE, FRAME % a2)) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3828 DoGet(_REMOTE, FRAME % b2)) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3829 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3830 DoGet(_REMOTE, FRAME % b1)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3831 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3832 DoGet(_REMOTE, FRAME % b2)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3833 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3834 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3835 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3836 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3837 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3838 |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3839 for i in range(3): |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3840 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3841 DoGet(_REMOTE, SOP % (a2, i))) |
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parents:
130
diff
changeset
|
3842 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3843 DoGet(_REMOTE, SOP % (b2, i))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3844 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3845 DoGet(_REMOTE, SOP % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3846 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3847 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3848 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3849 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3850 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3851 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3852 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3853 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3854 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3855 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3856 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3857 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3858 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3859 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3860 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3861 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3862 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3863 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3864 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3865 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3866 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3867 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3868 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3869 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3870 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3871 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3872 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3873 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3874 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3875 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3876 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3877 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3878 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3879 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3880 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3881 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3882 DoGet(_REMOTE, SOP % (a2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3883 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3884 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3885 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3886 DoGet(_REMOTE, SOP % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3887 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3888 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3889 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3890 DoGet(_REMOTE, CLASS % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3891 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3892 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3895 def test_anonymize_relationships_3(self): |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3896 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3897 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3898 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3899 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3900 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3901 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3902 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3903 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3904 self.assertEqual(2, len(a)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3905 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3906 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3907 sr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3908 mr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3909 else: |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3910 sr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3911 mr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3912 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3913 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3914 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3915 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3916 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3917 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3918 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3919 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3920 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3921 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3922 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3923 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3924 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3925 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3926 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3927 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3928 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3929 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3930 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3931 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3932 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3933 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3934 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3935 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3936 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3937 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3938 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3939 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3940 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3941 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
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3942 |
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3943 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
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3944 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
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3945 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
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3946 |
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3947 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
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3948 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
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3949 self.assertEqual(str(content1), str(content2)) |
141
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3950 |
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test_bitbucket_issue_94
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changeset
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3951 |
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test_bitbucket_issue_94
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3952 def test_bitbucket_issue_94(self): |
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3953 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
319 | 3954 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
141
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3955 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
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3956 |
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test_bitbucket_issue_94
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3957 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
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3958 |
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test_bitbucket_issue_94
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3959 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
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3960 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
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3961 |
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test_bitbucket_issue_94
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3962 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
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test_bitbucket_issue_94
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3963 |
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test_bitbucket_issue_94
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3964 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
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3965 self.assertEqual(1, len(a)) |
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3966 |
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test_bitbucket_issue_94
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3967 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
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3968 self.assertEqual(1, len(b)) |
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3969 |
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test_bitbucket_issue_94
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3970 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
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3971 self.assertEqual(1, len(c)) |
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3972 |
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test_bitbucket_issue_94
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3973 self.assertEqual(a, b) # Modified DICOM |
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3974 self.assertNotEqual(a, c) # Anonymized DICOM |
143
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3975 |
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changeset
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3976 |
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test_metadata_origin
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3977 def test_metadata_origin(self): |
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3978 # Upload using the REST API |
144
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3979 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
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3980 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3981 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3982 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3983 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
315 | 3984 |
3985 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
3986 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
3987 | |
144
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3988 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3989 self.assertEqual('RestApi', m['Origin']) |
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3990 self.assertEqual('', m['RemoteAET']) |
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3991 self.assertNotEqual('', m['RemoteIP']) |
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3992 self.assertFalse('CalledAET' in m) |
315 | 3993 self.assertTrue('HttpUsername' in m) |
3994 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
144
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diff
changeset
|
3995 |
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testing metadata?expand
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changeset
|
3996 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
7809fdf8056f
testing metadata?expand
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changeset
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3997 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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changeset
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3998 self.assertEqual('1', m['IndexInSeries']) |
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testing metadata?expand
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3999 self.assertTrue('ReceptionDate' in m) |
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testing metadata?expand
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diff
changeset
|
4000 |
143
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test_metadata_origin
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changeset
|
4001 DoDelete(_REMOTE, '/instances/%s' % i) |
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test_metadata_origin
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changeset
|
4002 |
28d50ffac07d
test_metadata_origin
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changeset
|
4003 # Upload using the DICOM protocol |
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test_metadata_origin
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diff
changeset
|
4004 subprocess.check_call([ FindExecutable('storescu'), |
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test_metadata_origin
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diff
changeset
|
4005 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
7809fdf8056f
testing metadata?expand
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diff
changeset
|
4006 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
7809fdf8056f
testing metadata?expand
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diff
changeset
|
4007 '-xw' ]) # Propose JPEG2000 |
143
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test_metadata_origin
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changeset
|
4008 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
28d50ffac07d
test_metadata_origin
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changeset
|
4009 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
28d50ffac07d
test_metadata_origin
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diff
changeset
|
4010 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
28d50ffac07d
test_metadata_origin
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changeset
|
4011 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
28d50ffac07d
test_metadata_origin
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diff
changeset
|
4012 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
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testing metadata?expand
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diff
changeset
|
4013 |
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testing metadata?expand
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diff
changeset
|
4014 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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testing metadata?expand
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diff
changeset
|
4015 self.assertEqual('DicomProtocol', m['Origin']) |
7809fdf8056f
testing metadata?expand
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diff
changeset
|
4016 self.assertEqual('STORESCU', m['RemoteAET']) |
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testing metadata?expand
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diff
changeset
|
4017 self.assertNotEqual('', m['RemoteIP']) |
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testing metadata?expand
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diff
changeset
|
4018 self.assertEqual('ANY-SCP', m['CalledAET']) |
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testing metadata?expand
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diff
changeset
|
4019 self.assertFalse('HttpUsername' in m) |
7809fdf8056f
testing metadata?expand
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diff
changeset
|
4020 |
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diff
changeset
|
4021 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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testing metadata?expand
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diff
changeset
|
4022 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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diff
changeset
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4023 self.assertEqual('1', m['IndexInSeries']) |
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diff
changeset
|
4024 self.assertTrue('ReceptionDate' in m) |
147 | 4025 |
4026 | |
4027 def test_lua_deadlock(self): | |
4028 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
4029 # is with the lua script I'm using for conversion of images to | |
4030 # JPEG2000. When the script is used with 1.4.0 the first | |
4031 # instance appears to be stored and then everything just | |
4032 # halts, ie Orthanc wont respond to anything after that." | |
4033 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 4034 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 4035 |
4036 subprocess.check_call([ FindExecutable('storescu'), | |
4037 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
4038 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
4039 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
4040 ]) | |
4041 | |
4042 instances = DoGet(_REMOTE, '/instances') | |
4043 self.assertEqual(2, len(instances)) | |
4044 | |
4045 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
4046 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 4047 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 4048 self.assertEqual(t1, t2); |
154
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diff
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|
4049 |
4a533d003080
test_find_group_length
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147
diff
changeset
|
4050 |
4a533d003080
test_find_group_length
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diff
changeset
|
4051 def test_find_group_length(self): |
4a533d003080
test_find_group_length
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diff
changeset
|
4052 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
4a533d003080
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diff
changeset
|
4053 # one of the Generic Group Length tags (*, 0x0000) |
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test_find_group_length
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diff
changeset
|
4054 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4a533d003080
test_find_group_length
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diff
changeset
|
4055 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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diff
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|
4056 self.assertFalse('UnableToProcess' in result) |
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diff
changeset
|
4057 self.assertFalse('E:' in result) |
179
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diff
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|
4058 |
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diff
changeset
|
4059 |
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changeset
|
4060 def test_split(self): |
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4061 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
4062 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
254
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diff
changeset
|
4063 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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diff
changeset
|
4064 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
179
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diff
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|
4065 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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diff
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|
4066 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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diff
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4067 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4068 |
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4069 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4070 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4071 |
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4072 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4073 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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|
4074 |
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4075 job = MonitorJob2(_REMOTE, lambda: DoPost |
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|
4076 (_REMOTE, '/studies/%s/split' % study, { |
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|
4077 'Series' : [ t2 ], |
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4078 'Replace' : { 'PatientName' : 'Hello' }, |
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4079 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 4080 'KeepSource' : False, |
4081 'Asynchronous' : True | |
179
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4082 })) |
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|
4083 |
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4084 self.assertNotEqual(None, job) |
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|
4085 |
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4086 studies = set(DoGet(_REMOTE, '/studies')) |
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4087 self.assertEqual(2, len(studies)) |
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|
4088 |
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4089 series = set(DoGet(_REMOTE, '/series')) |
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4090 self.assertEqual(2, len(series)) |
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4091 self.assertTrue(t1 in series) |
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|
4092 |
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4093 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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|
4094 self.assertTrue(study in studies) |
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4095 self.assertTrue(study2 in studies) |
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|
4096 |
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4097 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4098 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4099 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4100 |
254
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4101 sopInstanceUids = set() |
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|
4102 for i in DoGet(_REMOTE, '/instances?expand'): |
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4103 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4104 |
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4105 self.assertTrue(knee1Sop in sopInstanceUids) |
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4106 |
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4107 # Fails if Orthanc <= 1.5.7 |
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4108 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4109 |
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4110 # One original instance is kept, another one is added because of the split |
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4111 self.assertEqual(2, len(sopInstanceUids)) |
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4112 |
179
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|
4113 |
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4114 def test_merge(self): |
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4115 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
254
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4116 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4117 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4118 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
179
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|
4119 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4120 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4121 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4122 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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|
4123 |
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4124 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4125 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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|
4126 |
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4127 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4128 (_REMOTE, '/studies/%s/merge' % knee, { |
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4129 'Resources' : [ brainix ], |
181 | 4130 'KeepSource' : True, |
4131 'Synchronous' : False | |
179
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|
4132 })) |
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|
4133 |
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changeset
|
4134 self.assertNotEqual(None, job) |
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|
4135 |
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|
4136 studies = set(DoGet(_REMOTE, '/studies')) |
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|
4137 self.assertEqual(2, len(studies)) |
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|
4138 self.assertTrue(knee in studies) |
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|
4139 self.assertTrue(brainix in studies) |
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|
4140 |
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|
4141 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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|
4142 self.assertTrue(t1 in series) |
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|
4143 series.remove(t1) |
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|
4144 self.assertEqual(1, len(series)) |
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changeset
|
4145 |
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|
4146 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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|
4147 self.assertEqual(1, len(instances)) |
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|
4148 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4149 |
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changeset
|
4150 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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|
4151 self.assertEqual(1, len(instances)) |
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|
4152 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4153 |
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|
4154 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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|
4155 self.assertEqual(1, len(instances)) |
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|
4156 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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|
4157 |
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|
4158 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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|
4159 |
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|
4160 for key in tags['PatientMainDicomTags']: |
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|
4161 self.assertEqual(a[key], merged[key]) |
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4162 if (key in b and key != 'PatientSex'): |
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|
4163 self.assertNotEqual(a[key], b[key]) |
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|
4164 |
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|
4165 for key in tags['MainDicomTags']: |
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|
4166 # Not in the patient/study module |
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|
4167 if (not key in [ 'InstitutionName', |
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|
4168 'RequestingPhysician', |
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|
4169 'RequestedProcedureDescription', ]): |
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|
4170 self.assertEqual(a[key], merged[key]) |
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4171 if (key in b): |
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4172 self.assertNotEqual(a[key], b[key]) |
254
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4173 |
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|
4174 sopInstanceUids = set() |
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4175 for i in DoGet(_REMOTE, '/instances?expand'): |
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4176 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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|
4177 |
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|
4178 self.assertTrue(kneeSop in sopInstanceUids) |
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4179 self.assertTrue(brainixSop in sopInstanceUids) |
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|
4180 |
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|
4181 # Fails if Orthanc <= 1.5.7 |
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4182 # The 2 original instances are kept, another one is added because of the merge |
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4183 self.assertEqual(3, len(sopInstanceUids)) |
179
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4184 |
187 | 4185 |
4186 def test_async_archive(self): | |
4187 # Testing the asynchronous generation of archives/medias (new | |
4188 # in Orthanc 1.4.3) | |
4189 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4190 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4191 | |
4192 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4193 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4194 | |
4195 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4196 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4197 'Synchronous' : False | |
4198 })) | |
4199 | |
4200 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4201 self.assertEqual(1, len(z.namelist())) | |
4202 self.assertFalse('DICOMDIR' in z.namelist()) | |
4203 | |
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4204 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4205 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4206 self.assertEqual(1, info['Content']['InstancesCount']) |
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4207 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4208 |
187 | 4209 job2 = MonitorJob2(_REMOTE, lambda: DoPost |
4210 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4211 'Synchronous' : False | |
4212 })) | |
4213 | |
4214 # The archive from the first job has been replaced by the | |
4215 # archive from second job (as MediaArchiveSize == 1) | |
4216 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4217 | |
4218 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4219 self.assertEqual(2, len(z.namelist())) | |
4220 self.assertTrue('DICOMDIR' in z.namelist()) | |
4221 | |
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4222 info = DoGet(_REMOTE, '/jobs/%s' % job2) |
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4223 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4224 self.assertEqual(1, info['Content']['InstancesCount']) |
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4225 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4226 |
187 | 4227 job = MonitorJob2(_REMOTE, lambda: DoPost |
4228 (_REMOTE, '/tools/create-archive', { | |
4229 'Synchronous' : False, | |
4230 'Resources' : [ kneeT1, kneeT2 ], | |
4231 })) | |
4232 | |
4233 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4234 self.assertEqual(2, len(z.namelist())) | |
4235 self.assertFalse('DICOMDIR' in z.namelist()) | |
4236 | |
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4237 info = DoGet(_REMOTE, '/jobs/%s' % job) |
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4238 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4239 self.assertEqual(2, info['Content']['InstancesCount']) |
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4240 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4241 |
187 | 4242 job = MonitorJob2(_REMOTE, lambda: DoPost |
4243 (_REMOTE, '/tools/create-media', { | |
4244 'Synchronous' : False, | |
4245 'Resources' : [ kneeT1, kneeT2 ], | |
4246 })) | |
4247 | |
4248 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4249 self.assertEqual(3, len(z.namelist())) | |
4250 self.assertTrue('DICOMDIR' in z.namelist()) | |
188
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4251 |
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4252 self.assertEqual(0, info['Content']['ArchiveSizeMB']) # New in Orthanc 1.8.1 |
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4253 self.assertEqual(2, info['Content']['InstancesCount']) |
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4254 self.assertEqual(0, info['Content']['UncompressedSizeMB']) |
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4255 |
187 | 4256 |
188
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4257 def test_queries_hierarchy(self): |
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4258 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
189
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4259 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
188
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4260 |
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4261 tags = { |
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4262 'NumberOfPatientRelatedInstances' : '', |
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4263 'NumberOfPatientRelatedSeries' : '', |
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4264 'NumberOfPatientRelatedStudies' : '', |
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4265 'NumberOfStudyRelatedInstances' : '', |
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4266 'NumberOfStudyRelatedSeries' : '', |
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4267 'NumberOfSeriesRelatedInstances' : '', |
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4268 } |
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4269 |
189
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4270 tags2 = copy.copy(tags) |
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4271 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4272 |
188
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4273 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4274 'Level' : 'Patient', |
189
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4275 'Query' : tags2 |
188
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4276 }) ['ID'] |
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4277 |
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4278 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4279 'Level' : 'Study', |
189
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4280 'Query' : tags2 |
188
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4281 }) ['ID'] |
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4282 |
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4283 series = DoPost(_REMOTE, '/modalities/self/query', { |
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4284 'Level' : 'Series', |
189
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4285 'Query' : tags2 |
188
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4286 }) ['ID'] |
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4287 |
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4288 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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4289 'Level' : 'Instance', |
189
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4290 'Query' : tags2 |
188
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4291 }) ['ID'] |
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4292 |
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4293 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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4294 self.assertEqual(1, len(p)) |
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4295 self.assertEqual('887', p[0]['PatientID']) |
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4296 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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4297 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4298 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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4299 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4300 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4301 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4302 |
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4303 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4304 self.assertEqual(1, len(p)) |
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4305 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4306 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4307 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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4308 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4309 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4310 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4311 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4312 |
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4313 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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4314 self.assertEqual(1, len(p)) |
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4315 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
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4316 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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4317 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4318 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4319 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4320 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4321 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4322 |
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4323 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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4324 self.assertEqual(1, len(p)) |
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4325 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
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4326 |
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4327 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
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4328 { 'Query' : tags }) ['ID'] |
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4329 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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4330 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
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test_dicom_disk_size
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188
diff
changeset
|
4331 |
188
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4332 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4333 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4334 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4335 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4336 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4337 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4338 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4339 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4340 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4341 |
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4342 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4343 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4344 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4345 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4346 |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4347 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4348 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4349 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4350 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4351 |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4352 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4353 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4354 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4355 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4356 |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4357 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4358 def test_dicom_disk_size(self): |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4359 dicomSize = 0 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4360 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4361 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4362 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4363 for i in range(2): |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4364 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4365 UploadInstance(_REMOTE, p) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4366 dicomSize += os.path.getsize(GetDatabasePath(p)) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4367 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4368 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4369 self.assertEqual(2, s['CountInstances']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4370 self.assertEqual(2, s['CountSeries']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4371 self.assertEqual(1, s['CountStudies']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4372 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4373 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4374 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4375 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4376 |
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4377 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4378 def test_changes_2(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4379 # More consistent behavior since Orthanc 1.5.2 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4380 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4381 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4382 # Make sure that this is not the first change |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4383 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4384 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4385 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4386 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4387 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4388 # No more instance, but there were previous changes |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4389 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4390 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4391 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4392 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4393 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4394 seq = c['Last'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4395 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4396 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4397 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4398 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4399 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4400 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4401 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4402 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4403 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4404 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4405 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4406 # Add one instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4407 UploadInstance(_REMOTE, 'DummyCT.dcm') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4408 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4409 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4410 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4411 self.assertEqual(4, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4412 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4413 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4414 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4415 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4416 self.assertEqual(1, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4417 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4418 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4419 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4420 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4421 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4422 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4423 self.assertEqual(seq + 4, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4424 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4425 # Remove the uploaded instance |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4426 DoDelete(_REMOTE, '/instances/%s' % a) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4427 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4428 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4429 c = DoGet(_REMOTE, '/changes') |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4430 self.assertEqual(0, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4431 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4432 self.assertEqual(seq + 4, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
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4433 |
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4434 c = DoGet(_REMOTE, '/changes?last') |
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4435 self.assertEqual(0, len(c['Changes'])) |
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4436 self.assertTrue(c['Done']) |
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4437 self.assertEqual(seq + 4, c['Last']) |
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4438 |
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4439 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
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4440 self.assertEqual(0, len(c['Changes'])) |
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4441 self.assertTrue(c['Done']) |
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4442 self.assertEqual(seq + 4, c['Last']) |
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4443 |
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4444 |
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4445 def test_bitbucket_issue_124(self): |
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4446 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
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4447 |
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4448 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
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4449 self.assertEqual(2, len(z.namelist())) |
207
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4450 |
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4451 |
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test_invalid_findscp
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4452 def test_invalid_findscp(self): |
a515eec74078
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4453 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4454 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
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4455 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
208
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4456 |
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4457 |
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4458 def test_bitbucket_issue_90(self): |
2444c9a7c422
test_bitbucket_issue_90
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4459 def CountDicomResults(sex): |
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4460 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
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4461 return len(re.findall('\(0010,0040\)', a)) |
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4462 |
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4463 def CountRestResults(sex): |
2444c9a7c422
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4464 a = DoPost(_REMOTE, '/tools/find', |
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4465 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
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4466 return len(a) |
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4467 |
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4468 # Just like the "CR000000.dcm" of the issue, the test image |
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4469 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
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4470 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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|
4471 |
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changeset
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4472 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
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4473 |
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4474 # In wildcard constraints, the patient sex must be set for a match to occur |
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4475 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
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4476 self.assertEqual(0, CountRestResults('*')) |
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|
4477 |
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4478 # In single-valued constraints, the patient sex must be set |
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4479 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
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4480 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
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4481 self.assertEqual(0, CountRestResults('F')) |
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4482 self.assertEqual(0, CountRestResults('M')) |
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4483 |
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4484 # Empty constraints are only used to ask the actual value of |
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4485 # the tag to be added to the *answer*. The tag should not used |
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4486 # as a filter in such a situation. |
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4487 self.assertEqual(1, CountDicomResults('PatientSex')) |
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4488 self.assertEqual(1, CountDicomResults('PatientSex=')) |
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4489 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
210
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4490 |
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4491 |
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4492 def test_rest_modalities_in_study(self): |
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4493 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4494 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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4495 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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4496 |
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4497 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4498 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
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4499 self.assertEqual(0, len(a)) |
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4500 |
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|
4501 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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|
4502 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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|
4503 self.assertEqual(1, len(a)) |
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4504 |
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|
4505 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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|
4506 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4507 self.assertEqual(1, len(a)) |
211 | 4508 |
4509 | |
4510 def test_series_status(self): | |
4511 def HasCompletedInChanges(): | |
4512 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
4513 if c['ChangeType'] == 'CompletedSeries': | |
4514 return True; | |
4515 | |
4516 return False | |
4517 | |
4518 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
4519 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
4520 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4521 self.assertFalse(HasCompletedInChanges()) | |
4522 | |
4523 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
4524 | |
4525 for i in range(3): | |
4526 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
4527 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4528 self.assertFalse(HasCompletedInChanges()) | |
4529 | |
4530 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
4531 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4532 self.assertTrue(HasCompletedInChanges()) | |
4533 | |
4534 DoDelete(_REMOTE, '/changes') | |
4535 self.assertFalse(HasCompletedInChanges()) | |
4536 | |
4537 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
4538 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4539 self.assertFalse(HasCompletedInChanges()) | |
4540 | |
215 | 4541 |
4542 def test_dicomweb(self): | |
4543 def Compare(dicom, reference): | |
4544 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
4545 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
4546 headers = { 'Accept' : 'application/dicom+json' }) | |
4547 with open(GetDatabasePath(reference), 'rb') as c: | |
4548 d = json.load(c) | |
220 | 4549 AssertAlmostEqualRecursive(self, d, b) |
215 | 4550 |
4551 Compare('DummyCT.dcm', 'DummyCT.json') | |
4552 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
4553 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
4554 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
217 | 4555 |
4556 | |
4557 def test_issue_95_encodings(self): | |
319 | 4558 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
217 | 4559 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
4560 | |
4561 # Very useful tool: "file2" from package "file-kanji" | |
4562 | |
4563 def GetPatientName(dicom): | |
4564 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
4565 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
4566 return j['PatientName'] | |
4567 | |
4568 def ComparePatientName(name, dicom): | |
4569 self.assertEqual(name, GetPatientName(dicom)) | |
4570 | |
4571 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4572 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
4573 | |
4574 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
4575 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
4576 | |
4577 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
4578 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
4579 | |
4580 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
4581 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
4582 | |
4583 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
4584 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
4585 | |
4586 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4587 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
4588 | |
4589 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
4590 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
4591 | |
4592 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
4593 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
4594 | |
4595 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
4596 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
4597 # Linux console into Emacs automatically reverse the string | |
4598 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
4599 | |
4600 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
4601 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
4602 # characters by default, but copy/paste works with Emacs | |
4603 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
4604 | |
4605 # SCSH32: This SpecificCharacterSet is composed of 2 | |
4606 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
4607 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
4608 # remainer. Orthanc only takes into consideration the first | |
4609 # codepage: This is a limitation. | |
4610 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
4611 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ヤマダ^タロウ=')) | |
218
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4612 |
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|
4613 |
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4614 def test_findscu_missing_tags(self): |
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4615 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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test_findscu_missing_tags
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4616 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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|
4617 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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test_findscu_missing_tags
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diff
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|
4618 |
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test_findscu_missing_tags
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diff
changeset
|
4619 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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test_findscu_missing_tags
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diff
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4620 |
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test_findscu_missing_tags
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diff
changeset
|
4621 # We have 2 instances... |
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diff
changeset
|
4622 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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diff
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|
4623 self.assertEqual(2, len(patientNames)) |
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|
4624 self.assertEqual('KNIX', patientNames[0]) |
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|
4625 self.assertEqual('KNIX', patientNames[1]) |
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diff
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|
4626 |
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diff
changeset
|
4627 # ...but only 1 value for the "Rows" tag |
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|
4628 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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diff
changeset
|
4629 self.assertEqual(1, len(rows)) |
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|
4630 self.assertEqual('512', rows[0]) |
219
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test_bitbucket_issue_131
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parents:
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diff
changeset
|
4631 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4632 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4633 |
00e5aeea33dd
test_bitbucket_issue_131
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changeset
|
4634 def test_bitbucket_issue_131(self): |
00e5aeea33dd
test_bitbucket_issue_131
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diff
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|
4635 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4636 # StudyInstanceUID in it's database." |
319 | 4637 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
219
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test_bitbucket_issue_131
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diff
changeset
|
4638 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4639 # Insert 2 instances, with the same StudyInstanceUID, but with |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4640 # different patient IDs. Orthanc will create 2 distincts |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4641 # patients, and the hierarchy of resources above the two |
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218
diff
changeset
|
4642 # instances will be fully disjoint. |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4643 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4644 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4645 |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4646 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4647 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4648 |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4649 a = DoPost(_REMOTE, '/modalities/self/query', { |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4650 'Level' : 'Study', |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4651 'Query' : {"PatientID": "A" }})['ID'] |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4652 |
00e5aeea33dd
test_bitbucket_issue_131
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218
diff
changeset
|
4653 # 1 study is matched |
00e5aeea33dd
test_bitbucket_issue_131
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diff
changeset
|
4654 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4655 |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4656 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4657 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4658 (_REMOTE, '/queries/%s/retrieve' % a, | |
4659 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4660 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4661 # The two studies are matched, as we made the request at the |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4662 # Study level, thus the shared StudyInstanceUID is used as the key |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4663 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4664 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4665 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4666 # Match the 2 studies |
00e5aeea33dd
test_bitbucket_issue_131
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parents:
218
diff
changeset
|
4667 a = DoPost(_REMOTE, '/modalities/self/query', { |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4668 'Level' : 'Study', |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4669 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4670 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4671 DropOrthanc(_LOCAL) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4672 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4673 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4674 (_REMOTE, '/queries/%s/retrieve' % a, | |
4675 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4676 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4677 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4678 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4679 # Same test, at the patient level => only 1 instance is transfered |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4680 a = DoPost(_REMOTE, '/modalities/self/query', { |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4681 'Level' : 'Patient', |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4682 'Query' : {"PatientID": "A" }})['ID'] |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4683 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4684 DropOrthanc(_LOCAL) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4685 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4686 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4687 (_REMOTE, '/queries/%s/retrieve' % a, | |
4688 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4689 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4690 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4691 |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4692 # Same test, at the series level => only 1 instance is transfered |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4693 a = DoPost(_REMOTE, '/modalities/self/query', { |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4694 'Level' : 'Series', |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4695 'Query' : {"PatientID": "A" }})['ID'] |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4696 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4697 DropOrthanc(_LOCAL) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4698 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4699 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4700 (_REMOTE, '/queries/%s/retrieve' % a, | |
4701 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
218
diff
changeset
|
4702 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
00e5aeea33dd
test_bitbucket_issue_131
Sebastien Jodogne <s.jodogne@gmail.com>
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218
diff
changeset
|
4703 |
233
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4704 |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4705 def test_bitbucket_issue_136(self): |
ce0b19a2c807
test_bitbucket_issue_136
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parents:
231
diff
changeset
|
4706 UploadInstance(_REMOTE, 'Issue137.dcm') |
ce0b19a2c807
test_bitbucket_issue_136
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231
diff
changeset
|
4707 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
4708 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
ce0b19a2c807
test_bitbucket_issue_136
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
4709 self.assertEqual(1, len(patientNames)) |
ce0b19a2c807
test_bitbucket_issue_136
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231
diff
changeset
|
4710 self.assertEqual('John Doe', patientNames[0]) |
234
93cd4fdd4a67
test_anonymize_relationships_4
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diff
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|
4711 |
93cd4fdd4a67
test_anonymize_relationships_4
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diff
changeset
|
4712 |
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4713 def test_anonymize_relationships_4(self): |
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test_anonymize_relationships_4
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233
diff
changeset
|
4714 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
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test_anonymize_relationships_4
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diff
changeset
|
4715 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
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test_anonymize_relationships_4
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diff
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|
4716 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
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test_anonymize_relationships_4
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233
diff
changeset
|
4717 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
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test_anonymize_relationships_4
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diff
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|
4718 |
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test_anonymize_relationships_4
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diff
changeset
|
4719 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
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test_anonymize_relationships_4
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diff
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|
4720 'application/json')['ID'] |
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test_anonymize_relationships_4
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diff
changeset
|
4721 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
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test_anonymize_relationships_4
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diff
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|
4722 self.assertEqual(2, len(series)) |
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diff
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|
4723 |
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test_anonymize_relationships_4
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diff
changeset
|
4724 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
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test_anonymize_relationships_4
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diff
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|
4725 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
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test_anonymize_relationships_4
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diff
changeset
|
4726 self.assertEqual(1, len(cr)) |
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4727 self.assertEqual(1, len(pr)) |
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4728 self.assertEqual(1, len(cr[0]['Instances'])) |
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4729 self.assertEqual(1, len(pr[0]['Instances'])) |
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4730 |
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4731 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
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4732 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
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4733 |
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4734 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
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4735 crinstance['MainDicomTags']['SOPInstanceUID']) |
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4736 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
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4737 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
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4738 |
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4739 # This fails on Orthanc <= 1.5.6 |
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4740 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
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4741 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
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4742 |
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4743 |
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4744 def test_anonymize_relationships_5(self): |
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4745 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
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4746 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
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4747 oStudyId = ct1['ParentStudy'] |
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4748 oCtInstanceId = ct1['ID'] |
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4749 oRtInstanceId = rt1['ID'] |
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4750 |
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4751 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
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4752 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
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4753 |
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4754 # first validate the relationships in the source data |
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4755 oStudyUID = oCtTags['StudyInstanceUID'] |
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4756 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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4757 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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4758 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4759 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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4760 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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4761 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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4762 |
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4763 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4764 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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4765 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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4766 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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4767 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4768 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4769 |
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4770 ### anonymize |
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4771 |
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4772 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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4773 'application/json')['ID'] |
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4774 |
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4775 ### validate |
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4776 |
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4777 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4778 self.assertEqual(2, len(aSeries)) |
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4779 |
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4780 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4781 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4782 aCtInstanceId = aCt[0]['Instances'][0] |
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4783 aRtInstanceId = aRt[0]['Instances'][0] |
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4784 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4785 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4786 |
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4787 # now validate the relationships in the anonymized data |
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4788 aStudyUID = aCtTags['StudyInstanceUID'] |
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4789 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4790 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4791 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4792 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4793 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4794 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4795 |
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4796 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4797 # make sure all UIDs have been updated |
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4798 self.assertNotEqual(oStudyUID, aStudyUID) |
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4799 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4800 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4801 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4802 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4803 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4804 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4805 |
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4806 # validate the relationships |
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4807 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4808 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
256 | 4809 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
4810 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
255
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4811 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4812 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4813 |
256 | 4814 def test_anonymize_relationships_5b(self): |
4815 # same test as previous one but, this time, we force the StudyInstanceUID | |
4816 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
4817 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
4818 oStudyId = ct1['ParentStudy'] | |
4819 oCtInstanceId = ct1['ID'] | |
4820 oRtInstanceId = rt1['ID'] | |
4821 | |
4822 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
4823 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
4824 | |
4825 ### anonymize while forcing the StudyInstanceUID | |
4826 | |
4827 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
4828 'application/json')['ID'] | |
4829 | |
4830 ### validate | |
4831 | |
4832 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
4833 self.assertEqual(2, len(aSeries)) | |
4834 | |
4835 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
4836 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
4837 aCtInstanceId = aCt[0]['Instances'][0] | |
4838 aRtInstanceId = aRt[0]['Instances'][0] | |
4839 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
4840 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
4841 | |
4842 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
4843 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
4844 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
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4845 |
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4846 |
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4847 def test_bitbucket_issue_140(self): |
266 | 4848 # "Modifying private tags with REST API changes VR from LO to |
267 | 4849 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
319 | 4850 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
235
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4851 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4852 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4853 |
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4854 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
266 | 4855 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
4856 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
235
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4857 }, 'application/json') ['ID'] |
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4858 |
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4859 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4860 self.assertEqual(1, len(instances)) |
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4861 |
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4862 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4863 t = tags['4321,1012'] |
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4864 self.assertEqual('String', t['Type']) |
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4865 self.assertEqual('RadioButton3', t['Name']) |
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4866 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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|
4867 self.assertEqual('jklmopq', t['Value']) |
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diff
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|
4868 |
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test_bitbucket_issue_140
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234
diff
changeset
|
4869 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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test_bitbucket_issue_140
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diff
changeset
|
4870 t = tags['4321,1012'] |
327 | 4871 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
235
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test_bitbucket_issue_140
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parents:
234
diff
changeset
|
4872 self.assertEqual('RadioButton3', t['Name']) |
9929e4af2b7a
test_bitbucket_issue_140
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parents:
234
diff
changeset
|
4873 self.assertEqual('RadioLogic', t['PrivateCreator']) |
9929e4af2b7a
test_bitbucket_issue_140
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234
diff
changeset
|
4874 self.assertEqual('aaabbbccc', t['Value']) |
236
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parents:
235
diff
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|
4875 |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4876 |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4877 def test_find_normalize(self): |
2de1aec255ae
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diff
changeset
|
4878 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
2de1aec255ae
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235
diff
changeset
|
4879 |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
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235
diff
changeset
|
4880 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
2de1aec255ae
test_find_normalize
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parents:
235
diff
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|
4881 |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4882 a = DoPost(_REMOTE, '/modalities/self/query', { |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4883 'Level' : 'Instance', |
2de1aec255ae
test_find_normalize
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diff
changeset
|
4884 'Query' : { 'Rows' : '42' } |
2de1aec255ae
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235
diff
changeset
|
4885 }) ['ID'] |
2de1aec255ae
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parents:
235
diff
changeset
|
4886 |
2de1aec255ae
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parents:
235
diff
changeset
|
4887 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
2de1aec255ae
test_find_normalize
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diff
changeset
|
4888 self.assertEqual(1, len(b)) |
2de1aec255ae
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diff
changeset
|
4889 self.assertFalse('Rows' in b[0]) |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4890 |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4891 a = DoPost(_REMOTE, '/modalities/self/query', { |
2de1aec255ae
test_find_normalize
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diff
changeset
|
4892 'Level' : 'Instance', |
2de1aec255ae
test_find_normalize
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diff
changeset
|
4893 'Query' : { 'Rows' : '42' }, |
2de1aec255ae
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diff
changeset
|
4894 'Normalize' : False |
2de1aec255ae
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235
diff
changeset
|
4895 }) ['ID'] |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4896 |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4897 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4898 self.assertEqual(0, len(b)) |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4899 |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4900 a = DoPost(_REMOTE, '/modalities/self/query', { |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4901 'Level' : 'Instance', |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4902 'Query' : { 'Rows' : '512' }, |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4903 'Normalize' : False |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4904 }) ['ID'] |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4905 |
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4906 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4907 self.assertEqual(1, len(b)) |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4908 self.assertTrue('Rows' in b[0]) |
2de1aec255ae
test_find_normalize
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parents:
235
diff
changeset
|
4909 self.assertEqual('512', b[0]['Rows']) |
237 | 4910 |
4911 a = DoPost(_REMOTE, '/modalities/self/query', { | |
4912 'Level' : 'Instance', | |
4913 'Query' : { 'Rows' : '' }, | |
4914 'Normalize' : False | |
4915 }) ['ID'] | |
4916 | |
4917 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
4918 self.assertEqual(1, len(b)) | |
4919 self.assertTrue('Rows' in b[0]) | |
4920 self.assertEqual('512', b[0]['Rows']) | |
4921 | |
4922 self.assertRaises(Exception, lambda: DoPost( | |
4923 _REMOTE, '/modalities/self/query', { | |
4924 'Level' : 'Instance', | |
4925 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
4926 'Normalize' : False | |
4927 })) | |
243
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4928 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4929 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4930 def test_bitbucket_issue_141(self): |
319 | 4931 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
243
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4932 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4933 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4934 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4935 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4936 pdf = f.read() |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4937 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4938 b = DoPost(_REMOTE, '/tools/create-dicom', { |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4939 'Parent' : study, |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4940 'Tags' : {}, |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4941 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4942 }) ['ID'] |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4943 |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4944 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4945 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4946 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
cccf697a4e13
test_bitbucket_issue_141
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parents:
237
diff
changeset
|
4947 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
247
1abdab0ba0e6
test_modifying_missing_patientid
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parents:
243
diff
changeset
|
4948 |
1abdab0ba0e6
test_modifying_missing_patientid
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243
diff
changeset
|
4949 |
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4950 def test_modifying_missing_patientid(self): |
1abdab0ba0e6
test_modifying_missing_patientid
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243
diff
changeset
|
4951 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
1abdab0ba0e6
test_modifying_missing_patientid
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243
diff
changeset
|
4952 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
1abdab0ba0e6
test_modifying_missing_patientid
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243
diff
changeset
|
4953 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
262 | 4954 |
4955 | |
4956 def test_log_level(self): | |
319 | 4957 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
262 | 4958 original = DoGet(_REMOTE, '/tools/log-level') |
4959 | |
4960 DoPut(_REMOTE, '/tools/log-level', 'default') | |
4961 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
4962 DoGet(_REMOTE, '/system') | |
4963 | |
4964 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
4965 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
4966 DoGet(_REMOTE, '/system') | |
4967 | |
4968 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
4969 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
4970 DoGet(_REMOTE, '/system') | |
4971 | |
4972 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
4973 | |
4974 # Switch back to the original log level | |
4975 DoPut(_REMOTE, '/tools/log-level', original) | |
264
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
4976 |
445f498bc1d4
test_upload_compressed
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parents:
263
diff
changeset
|
4977 |
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4978 def test_upload_compressed(self): |
265 | 4979 # New in Orthanc 1.6.0 |
264
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
4980 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
445f498bc1d4
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diff
changeset
|
4981 d = f.read() |
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
4982 |
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
4983 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
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test_upload_compressed
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diff
changeset
|
4984 |
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
4985 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
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diff
changeset
|
4986 headers = { 'Content-Encoding' : 'nope' })) |
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263
diff
changeset
|
4987 |
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
4988 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
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diff
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|
4989 headers = { 'Content-Encoding' : 'gzip' }) |
445f498bc1d4
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263
diff
changeset
|
4990 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
262 | 4991 |
4992 | |
263
a2719263fd04
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262
diff
changeset
|
4993 def test_study_series_find_inconsistency(self): |
a2719263fd04
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diff
changeset
|
4994 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
a2719263fd04
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diff
changeset
|
4995 |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
changeset
|
4996 def CountAnswers(query): |
a2719263fd04
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diff
changeset
|
4997 a = DoPost(_REMOTE, 'modalities/self/query', query) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4998 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
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diff
changeset
|
4999 |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
changeset
|
5000 # This instance has "SeriesDescription" (0008,103e) tag, but no |
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262
diff
changeset
|
5001 # "ProtocolName" (0018,1030). Both of those tags are part of |
a2719263fd04
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diff
changeset
|
5002 # the "main DICOM tags" of Orthanc. |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5003 UploadInstance(_REMOTE, 'Issue137.dcm') |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
5004 |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5005 |
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test_study_series_find_inconsistency
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262
diff
changeset
|
5006 self.assertEqual(1, CountAnswers({ |
a2719263fd04
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diff
changeset
|
5007 'Level' : 'Study', |
a2719263fd04
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diff
changeset
|
5008 })) |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5009 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5010 self.assertEqual(1, CountAnswers({ |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5011 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5012 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5013 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5014 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5015 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5016 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
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|
5017 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5018 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5019 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5020 # At the study level, the "SeriesDescription" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5021 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5022 self.assertEqual(0, CountAnswers({ |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5023 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5024 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5025 'SeriesDescription' : 'NOPE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5026 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5027 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5028 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5029 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5030 # This test fails on Orthanc <= 1.5.8 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5031 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5032 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5033 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5034 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5035 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5036 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5037 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5038 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5039 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5040 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5041 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5042 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5043 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5044 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5045 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5046 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5047 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5048 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5049 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5050 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5051 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5052 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5053 # At the series level, the "SeriesDescription" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5054 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5055 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 'SeriesDescription' : '*' # Wildcard matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5080 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5081 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5082 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5083 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5084 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5085 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5086 'SeriesDescription' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5087 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5088 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5089 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5090 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5091 # Universal matching matches any instance, even if the |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5092 # query is at the study-level, and thus if "SeriesDescription" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5093 # makes no sense |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5094 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5095 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5096 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5097 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5098 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5099 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5100 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5101 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5102 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5103 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5104 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5105 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5106 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5107 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5108 # At the study level, the "ProtocolName" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5109 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5110 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5111 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5112 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5113 'ProtocolName' : 'NOPE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5114 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5115 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5116 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5117 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5118 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5119 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5120 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5121 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5122 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5123 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5124 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5125 'Level' : 'Study', |
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5126 'Query' : { |
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5127 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
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5128 }, |
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5129 'Normalize' : True |
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5130 })) |
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5131 self.assertEqual(1, CountAnswers({ |
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5132 'Level' : 'Study', |
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5133 'Query' : { |
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5134 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
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5135 }, |
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5136 'Normalize' : True |
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|
5137 })) |
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|
5138 |
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5139 for normalize in [ True, False ]: |
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5140 # At the series level, the "ProtocolName" tag is allowed, and |
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5141 # normalization has no effect |
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|
5142 |
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|
5143 self.assertEqual(1, CountAnswers({ |
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|
5144 'Level' : 'Series', |
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|
5145 'Query' : { |
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|
5146 'ProtocolName' : '' # Universal matching |
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|
5147 }, |
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|
5148 'Normalize' : normalize, |
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|
5149 })) |
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|
5150 self.assertEqual(0, CountAnswers({ |
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|
5151 'Level' : 'Series', |
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|
5152 'Query' : { |
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|
5153 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
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|
5154 }, |
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|
5155 'Normalize' : normalize, |
a2719263fd04
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|
5156 })) |
a2719263fd04
test_study_series_find_inconsistency
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|
5157 self.assertEqual(0, CountAnswers({ |
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diff
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|
5158 'Level' : 'Series', |
a2719263fd04
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diff
changeset
|
5159 'Query' : { |
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|
5160 'ProtocolName' : '*MISMATCHED^VALUE*' |
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|
5161 }, |
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diff
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|
5162 'Normalize' : normalize, |
a2719263fd04
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diff
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|
5163 })) |
a2719263fd04
test_study_series_find_inconsistency
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|
5164 |
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|
5165 self.assertEqual(1, CountAnswers({ |
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|
5166 'Level' : 'Study', |
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|
5167 'Query' : { |
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changeset
|
5168 'ProtocolName' : '' # Universal matching |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
5169 }, |
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test_study_series_find_inconsistency
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changeset
|
5170 'Normalize' : normalize, |
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test_study_series_find_inconsistency
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changeset
|
5171 })) |
a2719263fd04
test_study_series_find_inconsistency
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changeset
|
5172 |
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changeset
|
5173 |
a2719263fd04
test_study_series_find_inconsistency
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|
5174 ## |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5175 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
a2719263fd04
test_study_series_find_inconsistency
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diff
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|
5176 ## |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5177 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
5178 for level in [ 'Study', 'Series' ] : |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5179 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
5180 self.assertEqual(1, CountAnswers({ |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5181 'Level' : level, |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5182 'Query' : { |
a2719263fd04
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diff
changeset
|
5183 'StudyInstanceUID' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5184 }, |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5185 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5186 })) |
a2719263fd04
test_study_series_find_inconsistency
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diff
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|
5187 self.assertEqual(0, CountAnswers({ |
a2719263fd04
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262
diff
changeset
|
5188 'Level' : level, |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
changeset
|
5189 'Query' : { |
a2719263fd04
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diff
changeset
|
5190 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
5191 }, |
a2719263fd04
test_study_series_find_inconsistency
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parents:
262
diff
changeset
|
5192 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5193 })) |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5194 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5195 'Level' : level, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5196 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5197 'StudyInstanceUID' : '4.5.6' # This is the actual value |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
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|
5198 }, |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5199 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
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262
diff
changeset
|
5200 })) |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
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|
5201 |
269 | 5202 # Wildcard matching is not allowed for this VR |
263
a2719263fd04
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262
diff
changeset
|
5203 # This test fails on Orthanc <= 1.5.8 |
269 | 5204 self.assertRaises(Exception, lambda: CountAnswers({ |
263
a2719263fd04
test_study_series_find_inconsistency
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262
diff
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|
5205 'Level' : level, |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
5206 'Query' : { |
269 | 5207 'StudyInstanceUID' : '*' |
263
a2719263fd04
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262
diff
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|
5208 }, |
a2719263fd04
test_study_series_find_inconsistency
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262
diff
changeset
|
5209 'Normalize' : normalize, |
a2719263fd04
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|
5210 })) |
265 | 5211 |
5212 | |
5213 def test_rendered(self): | |
5214 # New in Orthanc 1.6.0 | |
5215 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
5216 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5217 self.assertEqual("RGB", im.mode) | |
5218 self.assertEqual(41, im.size[0]) | |
5219 self.assertEqual(41, im.size[1]) | |
5220 | |
5221 # http://effbot.org/zone/pil-comparing-images.htm | |
5222 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
5223 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
5224 | |
5225 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
5226 self.assertEqual("RGB", im.mode) | |
5227 self.assertEqual(10, im.size[0]) | |
5228 self.assertEqual(10, im.size[1]) | |
5229 | |
5230 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
5231 self.assertEqual("RGB", im.mode) | |
5232 self.assertEqual(10, im.size[0]) | |
5233 self.assertEqual(10, im.size[1]) | |
5234 | |
5235 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
5236 self.assertEqual("RGB", im.mode) | |
5237 self.assertEqual(128, im.size[0]) | |
5238 self.assertEqual(128, im.size[1]) | |
5239 | |
5240 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
5241 self.assertEqual("RGB", im.mode) | |
5242 self.assertEqual(10, im.size[0]) | |
5243 self.assertEqual(10, im.size[1]) | |
5244 | |
5245 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
5246 self.assertEqual("RGB", im.mode) | |
5247 self.assertEqual(10, im.size[0]) | |
5248 self.assertEqual(10, im.size[1]) | |
5249 | |
5250 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
5251 self.assertEqual("RGB", im.mode) | |
5252 self.assertEqual(5, im.size[0]) | |
5253 self.assertEqual(5, im.size[1]) | |
5254 | |
5255 | |
5256 # Grayscale image | |
5257 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
5258 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5259 self.assertEqual("L", im.mode) | |
5260 self.assertEqual(288, im.size[0]) | |
5261 self.assertEqual(288, im.size[1]) | |
5262 self.assertEqual(0, im.getpixel((0, 0))) | |
5263 | |
5264 # Those are the original windowing parameters that are written | |
5265 # inside the DICOM file | |
5266 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
5267 self.assertEqual("L", im2.mode) | |
5268 self.assertEqual(288, im2.size[0]) | |
5269 self.assertEqual(288, im2.size[1]) | |
5270 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
5271 | |
5272 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
5273 self.assertEqual("L", im.mode) | |
5274 self.assertEqual(512, im.size[0]) | |
5275 self.assertEqual(512, im.size[1]) | |
5276 | |
5277 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
5278 self.assertEqual("L", im.mode) | |
5279 self.assertEqual(10, im.size[0]) | |
5280 self.assertEqual(10, im.size[1]) | |
5281 | |
5282 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
5283 self.assertEqual("L", im.mode) | |
5284 self.assertEqual(10, im.size[0]) | |
5285 self.assertEqual(10, im.size[1]) | |
5286 | |
5287 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
5288 self.assertEqual("L", im.mode) | |
5289 self.assertEqual(1, im.size[0]) | |
5290 self.assertEqual(1, im.size[1]) | |
5291 self.assertEqual(255, im.getpixel((0, 0))) | |
5292 | |
5293 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
5294 self.assertEqual("L", im.mode) | |
5295 self.assertEqual(1, im.size[0]) | |
5296 self.assertEqual(1, im.size[1]) | |
5297 self.assertEqual(0, im.getpixel((0, 0))) | |
5298 | |
5299 | |
5300 # Test monochrome 1 | |
5301 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
5302 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5303 self.assertEqual("L", im.mode) | |
5304 self.assertEqual(2010, im.size[0]) | |
5305 self.assertEqual(2446, im.size[1]) | |
5306 self.assertEqual(0, im.getpixel((0, 0))) | |
5307 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
5308 self.assertEqual("L", im.mode) | |
5309 self.assertEqual(20, im.size[0]) | |
5310 self.assertEqual(24, im.size[1]) | |
5311 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
5312 self.assertEqual("L", im.mode) | |
5313 self.assertEqual(20, im.size[0]) | |
5314 self.assertEqual(24, im.size[1]) | |
5315 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
5316 self.assertEqual("L", im.mode) | |
5317 self.assertEqual(10, im.size[0]) | |
5318 self.assertEqual(12, im.size[1]) | |
5319 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
5320 self.assertEqual("L", im.mode) | |
5321 self.assertEqual(20, im.size[0]) | |
5322 self.assertEqual(24, im.size[1]) | |
268
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5323 |
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|
5324 |
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|
5325 def test_bitbucket_issue_154(self): |
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5326 # "Matching against list of UID-s by C-MOVE" |
319 | 5327 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
268
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5328 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5329 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5330 |
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5331 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5332 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5333 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5334 |
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5335 # C-FIND is working on list of UIDs |
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5336 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5337 '-k', 'StudyInstanceUID=%s' % study, |
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5338 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5339 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5340 self.assertEqual(2, len(series)) |
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5341 self.assertTrue(series1 in series) |
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5342 self.assertTrue(series2 in series) |
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5343 |
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5344 # Individual retrieval is working in Orthanc < 1.6.0 |
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5345 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5346 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5347 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5348 '-k', 'StudyInstanceUID=%s' % study, |
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5349 '-k', 'SeriesInstanceUID=%s' % series1, |
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5350 ]))) |
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5351 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5352 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5353 '-k', 'StudyInstanceUID=%s' % study, |
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5354 '-k', 'SeriesInstanceUID=%s' % series2, |
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5355 ]))) |
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5356 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5357 |
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5358 DropOrthanc(_LOCAL) |
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5359 |
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5360 # But list matching is working only in Orthanc >= 1.6.0 |
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5361 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5362 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5363 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5364 '-k', 'StudyInstanceUID=%s' % study, |
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5365 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5366 ]))) |
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5367 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
279
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5368 |
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5369 |
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5370 def test_storage_commitment_api(self): |
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5371 # Storage commitment is available since Orthanc 1.6.0 |
280
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5372 |
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5373 def WaitTransaction(uid): |
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5374 while True: |
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5375 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5376 if s['Status'] != 'Pending': |
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5377 return s |
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5378 else: |
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5379 time.sleep(0.01) |
280
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5380 |
281 | 5381 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
279
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5382 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5383 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5384 |
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5385 # Against self |
281 | 5386 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5387 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
5388 }) ['ID'] | |
279
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5389 self.assertTrue(transaction.startswith('2.25.')) |
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5390 |
280
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5391 result = WaitTransaction(transaction) |
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5392 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5393 self.assertEqual('Success', result['Status']) |
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5394 self.assertEqual(1, len(result['Success'])) |
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5395 self.assertEqual(0, len(result['Failures'])) |
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5396 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5397 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5398 |
281 | 5399 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5400 "DicomInstances" : [ | |
5401 { 'SOPClassUID' : sopClassUid, | |
5402 'SOPInstanceUID' : sopInstanceUid }, | |
5403 ], | |
5404 }) | |
5405 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
5406 self.assertEqual(result, WaitTransaction(transaction)) | |
5407 | |
5408 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
5409 "Resources" : [ | |
5410 instance['ID'], | |
5411 instance['ParentSeries'], | |
5412 instance['ParentStudy'], | |
5413 instance['ParentPatient'], | |
5414 ] | |
5415 }) | |
280
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5416 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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5417 self.assertEqual(result, WaitTransaction(transaction)) |
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5418 |
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5419 |
281 | 5420 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5421 "DicomInstances" : [ | |
5422 [ 'nope', 'nope2' ], | |
5423 [ sopClassUid, sopInstanceUid ], | |
5424 ], | |
5425 }) ['ID'] | |
279
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5426 self.assertTrue(transaction.startswith('2.25.')) |
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5427 |
280
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5428 result = WaitTransaction(transaction) |
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5429 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5430 self.assertEqual('Failure', result['Status']) |
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5431 self.assertEqual(1, len(result['Success'])) |
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5432 self.assertEqual(1, len(result['Failures'])) |
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5433 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5434 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5435 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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5436 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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5437 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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5438 |
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5439 # Cannot remove items from a failed storage commitment transaction |
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5440 self.assertRaises(Exception, lambda: |
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5441 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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5442 |
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5443 |
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5444 # Against Orthanc 0.8.6, that does not support storage commitment |
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5445 self.assertRaises(Exception, lambda: |
281 | 5446 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
5447 "DicomInstances" : [ | |
5448 [ sopClassUid, sopInstanceUid ], | |
5449 ] | |
5450 })) | |
279
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5451 |
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5452 |
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5453 |
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5454 def test_storage_commitment_store(self): |
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5455 # Storage commitment is available since Orthanc 1.6.0 |
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5456 |
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5457 def WaitTransaction(uid): |
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5458 while True: |
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5459 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5460 if s['Status'] != 'Pending': |
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5461 return s |
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5462 else: |
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parents:
341
diff
changeset
|
5463 time.sleep(0.01) |
280
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5464 |
279
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5465 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5466 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
31e1e49df380
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269
diff
changeset
|
5467 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5468 |
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5469 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5470 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5471 'Resources' : [ i ], |
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5472 'StorageCommitment' : True, |
31e1e49df380
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5473 })) |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5474 |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5475 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5476 'Resources' : [ i ], |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5477 'StorageCommitment' : False, |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5478 }) |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5479 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5480 |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5481 j = DoPost(_REMOTE, '/modalities/self/store', { |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5482 'Resources' : [ i ], |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5483 'StorageCommitment' : True, |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5484 }) |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5485 |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5486 transaction = j['StorageCommitmentTransactionUID'] |
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5487 self.assertTrue(transaction.startswith('2.25.')) |
280
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5488 |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5489 result = WaitTransaction(transaction) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5490 self.assertEqual('ORTHANC', result['RemoteAET']) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5491 self.assertEqual('Success', result['Status']) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5492 self.assertEqual(1, len(result['Success'])) |
5daa3896981c
testing storage commitment reports
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parents:
279
diff
changeset
|
5493 self.assertEqual(0, len(result['Failures'])) |
5daa3896981c
testing storage commitment reports
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parents:
279
diff
changeset
|
5494 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
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testing storage commitment reports
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diff
changeset
|
5495 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5496 result['Success'][0]['SOPInstanceUID']) |
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testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5497 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5498 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5499 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5500 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
285
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5501 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5502 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5503 def test_store_straight(self): # New in Orthanc 1.6.1 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5504 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5505 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5506 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5507 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5508 dicom = f.read() |
281a32ecc5c1
test_store_straight
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parents:
281
diff
changeset
|
5509 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5510 self.assertRaises(Exception, lambda: DoPost( |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5511 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5512 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5513 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5514 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5515 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5516 answer['SOPClassUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5517 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5518 answer['SOPInstanceUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5519 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5520 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5521 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5522 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5523 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5524 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5525 # Add a RLE-encoded DICOM file |
4a70411ac9ad
test_storescu_transcoding
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parents:
285
diff
changeset
|
5526 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5527 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5528 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
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parents:
285
diff
changeset
|
5529 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5530 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5531 # Export the instance, with transcoding: "_REMOTE" is the |
4a70411ac9ad
test_storescu_transcoding
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diff
changeset
|
5532 # Orthanc server being tested |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5533 try: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5534 DoDelete(_REMOTE, '/modalities/toto') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5535 except: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5536 pass |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5537 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5538 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5539 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5540 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5541 j = DoGet(_LOCAL, '/instances') |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5542 self.assertEqual(1, len(j)) |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5543 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5544 self.assertTrue(uncompressedSize > rleSize / 2) |
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test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5545 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5546 # Export, with transcoding disabled => this fails |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5547 params['AllowTranscoding'] = False |
4a70411ac9ad
test_storescu_transcoding
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285
diff
changeset
|
5548 DoPut(_REMOTE, '/modalities/toto', params) |
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test_storescu_transcoding
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parents:
285
diff
changeset
|
5549 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
290
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5550 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5551 |
b5333f87065b
test_bitbucket_issue_169
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289
diff
changeset
|
5552 def test_bitbucket_issue_169(self): |
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test_bitbucket_issue_169
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diff
changeset
|
5553 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
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test_bitbucket_issue_169
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289
diff
changeset
|
5554 dicom = bz2.decompress(f.read()) |
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test_bitbucket_issue_169
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289
diff
changeset
|
5555 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5556 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5557 |
b5333f87065b
test_bitbucket_issue_169
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289
diff
changeset
|
5558 self.assertEqual(44350560, len(dicom)) |
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5559 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5560 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5561 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5562 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5563 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5564 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
b5333f87065b
test_bitbucket_issue_169
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289
diff
changeset
|
5565 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
b5333f87065b
test_bitbucket_issue_169
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289
diff
changeset
|
5566 j = DoGet(_LOCAL, '/instances') |
b5333f87065b
test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5567 self.assertEqual(1, len(j)) |
b5333f87065b
test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5568 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5569 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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289
diff
changeset
|
5570 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
b5333f87065b
test_bitbucket_issue_169
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289
diff
changeset
|
5571 # Little Endian" (1.2.840.10008.1.2) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5572 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5573 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
290
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5574 |
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test_bitbucket_issue_169
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289
diff
changeset
|
5575 # In Orthanc <= 1.6.1, the value of the private tags was lost |
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test_bitbucket_issue_169
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289
diff
changeset
|
5576 # because of this transcoding |
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test_bitbucket_issue_169
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289
diff
changeset
|
5577 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
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test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5578 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
291
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test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5579 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5580 |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5581 def test_modify_transcode_instance(self): |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5582 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5583 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5584 DoGet(_REMOTE, '/instances/%s/file' % i))) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5585 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5586 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5587 self.assertTrue(len(a) > 20) |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5588 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5589 SYNTAXES = [ |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5590 '1.2.840.10008.1.2', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5591 '1.2.840.10008.1.2.1', |
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
299
diff
changeset
|
5592 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5593 '1.2.840.10008.1.2.2', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5594 '1.2.840.10008.1.2.4.50', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5595 '1.2.840.10008.1.2.4.51', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5596 '1.2.840.10008.1.2.4.57', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5597 '1.2.840.10008.1.2.4.70', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5598 ] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5599 |
304 | 5600 if HasGdcmPlugin(_REMOTE): |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5601 SYNTAXES = SYNTAXES + [ |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5602 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5603 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5604 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5605 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5606 ] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5607 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5608 for syntax in SYNTAXES: |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5609 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5610 'Transcode' : syntax, |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5611 'Keep' : [ 'SOPInstanceUID' ], |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5612 'Force' : True, |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5613 }) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5614 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5615 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5616 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5617 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5618 self.assertTrue(len(b) > 20) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5619 if syntax in [ '1.2.840.10008.1.2.4.50', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5620 '1.2.840.10008.1.2.4.51', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5621 '1.2.840.10008.1.2.4.81', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5622 '1.2.840.10008.1.2.4.91' ]: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5623 # Lossy transcoding: The SOP instance UID must have changed |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5624 self.assertNotEqual(a, b) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5625 else: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5626 self.assertEqual(a, b) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5627 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5628 def test_archive_transcode(self): |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5629 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5630 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5631 # GET on "/media" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5632 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5633 self.assertEqual(2, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5634 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5635 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5636 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5637 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5638 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5639 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5640 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5641 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5642 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5643 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5644 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5645 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5646 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5647 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5648 # POST on "/media" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5649 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5650 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5651 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5652 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5653 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5654 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5655 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5656 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5657 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5658 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5659 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5660 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5661 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5662 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5663 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5664 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5665 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5666 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5667 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5668 # GET on "/archive" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5669 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5670 self.assertEqual(1, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5671 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5672 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5673 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5674 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5675 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5676 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5677 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5678 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5679 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5680 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5681 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5682 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5683 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5684 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5685 # POST on "/archive" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5686 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5687 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5688 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5689 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5690 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5691 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5692 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5693 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5694 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5695 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5696 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5697 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5698 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5699 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5700 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5701 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5702 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5703 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5704 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5705 # "/tools/create-*" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5706 z = PostArchive(_REMOTE, '/tools/create-archive', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5707 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5708 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5709 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5710 self.assertEqual(1, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5711 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5712 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5713 z = PostArchive(_REMOTE, '/tools/create-media', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5714 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5715 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5716 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5717 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5718 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5719 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5720 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5721 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5722 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5723 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5724 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5725 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5726 |
308 | 5727 |
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5728 def test_modify_keep_source(self): |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5729 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5730 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5731 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5732 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5733 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5734 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5735 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5736 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5737 'KeepSource' : True, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5738 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5739 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5740 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5741 self.assertEqual(2, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5742 self.assertTrue(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5743 self.assertTrue(j['ID'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5744 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5745 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5746 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5747 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5748 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5749 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5750 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5751 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5752 'KeepSource' : False, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5753 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5754 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5755 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5756 self.assertEqual(1, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5757 self.assertFalse(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5758 self.assertTrue(j['ID'] in s) |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5759 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5760 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5761 def test_modify_transcode_study(self): |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5762 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5763 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5764 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5765 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5766 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5767 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5768 'Transcode' : '1.2.840.10008.1.2.4.50', |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5769 'KeepSource' : False |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5770 }) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5771 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5772 k = DoGet(_REMOTE, '/instances') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5773 self.assertEqual(1, len(k)) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5774 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5775 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5776 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5777 |
305
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5778 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5779 def test_store_peer_transcoding(self): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5780 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5781 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5782 SYNTAXES = [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5783 '1.2.840.10008.1.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5784 '1.2.840.10008.1.2.1', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5785 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
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5786 '1.2.840.10008.1.2.2', |
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5787 '1.2.840.10008.1.2.4.50', |
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5788 '1.2.840.10008.1.2.4.51', |
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5789 '1.2.840.10008.1.2.4.57', |
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5790 '1.2.840.10008.1.2.4.70', |
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5791 ] |
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5792 |
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5793 if HasGdcmPlugin(_REMOTE): |
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5794 SYNTAXES = SYNTAXES + [ |
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5795 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
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5796 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
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5797 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
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5798 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
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5799 ] |
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|
5800 |
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5801 for syntax in SYNTAXES: |
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5802 body = { |
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5803 'Resources' : [ i ], |
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5804 } |
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5805 |
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5806 if syntax != '1.2.840.10008.1.2.1': |
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5807 body['Transcode'] = syntax |
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5808 |
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5809 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5810 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5811 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
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5812 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5813 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5814 self.assertEqual(syntax, GetTransferSyntax( |
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5815 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
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5816 |
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|
5817 DropOrthanc(_LOCAL) |
308 | 5818 |
5819 | |
295 | 5820 def test_getscu(self): |
307 | 5821 def CleanTarget(): |
5822 if os.path.isdir('/tmp/GETSCU'): | |
5823 shutil.rmtree('/tmp/GETSCU') | |
5824 os.makedirs('/tmp/GETSCU') | |
5825 | |
306
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5826 env = {} |
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5827 if _DOCKER: |
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5828 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
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5829 # and running in a GNU/Linux distribution running DCMTK |
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5830 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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5831 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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5832 |
295 | 5833 # no transcoding required |
307 | 5834 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
5835 | |
5836 CleanTarget() | |
295 | 5837 |
306
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|
5838 subprocess.check_call([ |
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|
5839 FindExecutable('getscu'), |
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|
5840 _REMOTE['Server'], |
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|
5841 str(_REMOTE['DicomPort']), |
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|
5842 '-aec', 'ORTHANC', |
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|
5843 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
307 | 5844 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
306
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|
5845 '-k', '0008,0052=STUDY', |
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|
5846 '--output-directory', '/tmp/GETSCU/' |
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|
5847 ], env = env) |
295 | 5848 |
311 | 5849 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
5850 self.assertTrue(os.path.isfile(f1)) | |
5851 with open(f1, 'rb') as f: | |
5852 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5853 | |
307 | 5854 CleanTarget() |
295 | 5855 |
5856 # transcoding required | |
311 | 5857 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
307 | 5858 |
5859 subprocess.check_call([ | |
5860 FindExecutable('getscu'), | |
5861 _REMOTE['Server'], | |
5862 str(_REMOTE['DicomPort']), | |
5863 '-aec', 'ORTHANC', | |
5864 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
311 | 5865 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
307 | 5866 '-k', '0008,0052=STUDY', |
5867 '--output-directory', '/tmp/GETSCU/' | |
5868 ], env = env) | |
5869 | |
311 | 5870 self.assertTrue(os.path.isfile(f1)) |
5871 with open(f1, 'rb') as f: | |
5872 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5873 | |
5874 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
5875 # (LittleEndianExplicit is proposed by default by "getscu") | |
5876 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
5877 self.assertTrue(os.path.isfile(f2)) | |
5878 with open(f2, 'rb') as f: | |
5879 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
324
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|
5880 |
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changeset
|
5881 |
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changeset
|
5882 def test_findscu_truncation(self): |
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|
5883 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
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|
5884 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
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|
5885 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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|
5886 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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diff
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|
5887 |
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diff
changeset
|
5888 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
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diff
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|
5889 |
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diff
changeset
|
5890 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
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|
5891 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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|
5892 self.assertEqual(2, len(result)) |
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diff
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|
5893 |
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diff
changeset
|
5894 # The "StudyInstanceUID" is set as a list of 5 times the same |
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diff
changeset
|
5895 # study, leading to a string of 249 characters |
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diff
changeset
|
5896 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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diff
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|
5897 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
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diff
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|
5898 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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|
5899 self.assertEqual(1, len(result)) |
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|
5900 |
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diff
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|
5901 # The "StudyInstanceUID" is set as a list of 6 times the same |
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5902 # study, leading to a string of 299 characters. In Orthanc <= |
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|
5903 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
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5904 # == 256, and is thus wiped out by C-FIND SCP. As a |
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5905 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
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5906 # "StudyInstanceUID" and returns all the available |
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5907 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
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5908 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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5909 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
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5910 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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5911 self.assertEqual(1, len(result)) |
328
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|
5912 |
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|
5913 |
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|
5914 def test_store_compressed(self): |
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5915 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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5916 dicom = f.read() |
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5917 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
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5918 sourceSize = len(dicom) |
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5919 |
328
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5920 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5921 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5922 |
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5923 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
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5924 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5925 _REMOTE, '/peers/peer/store', { |
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5926 'Resources' : [ i ], |
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5927 'Synchronous' : False, |
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5928 })) |
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5929 |
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5930 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5931 self.assertFalse(job['Content']['Compress']) |
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5932 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
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5933 self.assertEqual(str(sourceSize), job['Content']['Size']) |
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5934 |
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5935 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5936 DropOrthanc(_LOCAL) |
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5937 |
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5938 # Sending to the local Orthanc 0.8.6 server, with compression: |
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5939 # Not supported by Orthanc 0.8.6 => failure |
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5940 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
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5941 'Resources' : [ i ], |
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5942 'Compress' : True, |
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5943 })) |
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5944 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5945 |
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5946 # Sending to the tested remote server, with compression: OK |
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5947 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5948 _REMOTE, '/peers/self/store', { |
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5949 'Resources' : [ i ], |
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5950 'Compress' : True, |
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5951 'Synchronous' : False, |
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5952 })) |
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5953 |
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5954 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5955 self.assertTrue(job['Content']['Compress']) |
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5956 |
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5957 # Compression must have divided the size of the sent data at least twice |
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5958 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
332 | 5959 |
5960 | |
5961 def test_move_ambra(self): | |
5962 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
5963 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
5964 | |
5965 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
5966 | |
5967 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5968 '--study', | |
5969 '-k', 'StudyInstanceUID=' | |
5970 ]))) | |
5971 | |
5972 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5973 '--study', | |
5974 '-k', 'AccessionNumber=', | |
5975 ]))) | |
5976 | |
5977 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5978 '--study', | |
5979 '-k', 'AccessionNumber=', | |
5980 '-k', 'StudyInstanceUID=' | |
5981 ]))) | |
5982 | |
5983 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5984 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5985 '--study', | |
5986 '-k', 'AccessionNumber=CT16000988', | |
5987 '-k', 'StudyInstanceUID=', | |
5988 ]))) | |
5989 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5990 DropOrthanc(_LOCAL) | |
5991 | |
5992 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5993 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5994 '--study', | |
5995 '-k', 'AccessionNumber=CT16000988', | |
5996 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
5997 ]))) | |
5998 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5999 DropOrthanc(_LOCAL) | |
6000 | |
6001 # This fails on Orthanc <= 1.7.3 | |
6002 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
6003 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
6004 '--study', | |
6005 '-k', 'AccessionNumber=', | |
6006 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
6007 ]))) | |
6008 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
6009 DropOrthanc(_LOCAL) | |
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6010 |
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6011 |
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6012 def test_decode_elscint(self): |
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6013 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
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6014 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
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6015 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
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6016 |
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6017 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
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6018 self.assertEqual("L", im.mode) |
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6019 self.assertEqual(512, im.size[0]) |
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6020 self.assertEqual(512, im.size[1]) |
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6021 |
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6022 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
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6023 self.assertEqual("L", im.mode) |
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6024 self.assertEqual(512, im.size[0]) |
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6025 self.assertEqual(512, im.size[1]) |
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6026 |
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6027 # The two tests below fail on Orthanc <= 1.7.3 |
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6028 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
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6029 self.assertEqual(512 * 512 * 2, len(raw)) |
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6030 |
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6031 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
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6032 self.assertEqual(512 * 512 * 2, len(raw)) |
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6033 |
334
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6034 |
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6035 def test_rest_modalities_in_study_2(self): |
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6036 # Problem reported by Alain Mazy on 2020-09-15 |
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6037 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
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6038 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
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6039 |
335
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6040 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
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6041 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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6042 self.assertEqual(1, len(modalitiesInStudy)) |
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6043 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
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6044 |
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6045 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
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6046 # The empty string '' corresponds to universal matching. |
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6047 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
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6048 |
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|
6049 if i in [ 'UX', 'UX\\MR' ]: |
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6050 expected = 0 |
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6051 else: |
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6052 expected = 1 |
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6053 |
334
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|
6054 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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6055 'Query' : { 'ModalitiesInStudy' : i }}) |
335
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|
6056 self.assertEqual(expected, len(a)) |
334
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6057 |
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|
6058 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
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|
6059 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
335
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|
6060 self.assertEqual(expected, len(studyInstanceUid)) |
337
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|
6061 |
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|
6062 |
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6063 def test_webdav(self): |
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6064 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
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6065 |
342
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|
6066 for suffix in [ '', '/' ]: |
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6067 f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) |
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6068 self.assertEqual(1, len(f)) |
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6069 self.assertTrue('/webdav/' in f.keys()) |
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6070 self.assertTrue(f['/webdav/']['folder']) |
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6071 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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|
6072 |
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6073 f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) |
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6074 self.assertEqual(6, len(f)) |
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6075 self.assertTrue(f['/webdav/']['folder']) |
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6076 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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6077 |
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6078 for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: |
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6079 self.assertTrue(f['/webdav/%s' % i]['folder']) |
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6080 self.assertEqual(i, f['/webdav/%s' % i]['displayname']) |
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6081 |
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6082 for depth in [ 0, 1 ]: |
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6083 for suffix2 in [ '', '/' ]: |
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6084 g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) |
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6085 |
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6086 if i == 'uploads': |
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6087 # Empty folders might still exist in "/uploads/" |
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6088 self.assertTrue('/webdav/uploads/' in g) |
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6089 self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) |
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6090 for j in g.items(): |
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6091 self.assertTrue(g.items()[0][1]['folder']) |
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6092 else: |
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6093 self.assertEqual(1, len(g)) |
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6094 self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) |
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6095 self.assertTrue(g.items()[0][1]['folder']) |
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6096 self.assertEqual(i, g.items()[0][1]['displayname']) |
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6097 |
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6098 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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6099 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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6100 DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') |
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6101 |
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6102 while len(DoGet(_REMOTE, '/patients')) == 0: |
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6103 time.sleep(0.01) |
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6104 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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6105 |
349
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6106 |
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6107 def test_log_categories(self): |
350 | 6108 original = DoGet(_REMOTE, '/tools/log-level-http') |
349
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6109 |
350 | 6110 DoPut(_REMOTE, '/tools/log-level-http', 'default') |
6111 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
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6112 DoGet(_REMOTE, '/system') |
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6113 |
350 | 6114 DoPut(_REMOTE, '/tools/log-level-http', 'verbose') |
6115 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
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6116 DoGet(_REMOTE, '/system') |
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6117 |
350 | 6118 DoPut(_REMOTE, '/tools/log-level-http', 'trace') |
6119 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) | |
349
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6120 DoGet(_REMOTE, '/system') |
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6121 |
350 | 6122 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) |
349
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6123 |
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6124 # Switch back to the original log level |
350 | 6125 DoPut(_REMOTE, '/tools/log-level-http', original) |
6126 | |
6127 for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: | |
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6128 DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) |
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6129 |
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6130 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) |
357 | 6131 |
6132 | |
6133 def test_upload_zip(self): | |
6134 f = StringIO() | |
6135 with zipfile.ZipFile(f, 'w') as z: | |
6136 z.writestr('hello/world/invalid.txt', 'Hello world') | |
6137 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as g: | |
6138 c = g.read() | |
6139 z.writestr('hello/world/dicom1.dcm', c) | |
6140 z.writestr('hello/world/dicom2.dcm', c) | |
6141 | |
6142 f.seek(0) | |
6143 i = DoPost(_REMOTE, '/instances', f.read()) | |
6144 | |
6145 self.assertEqual(2, len(i)) | |
6146 self.assertEqual(i[0], i[1]) | |
6147 self.assertEqual(6, len(i[0])) | |
6148 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['ID']) | |
6149 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', i[0]['ParentSeries']) | |
6150 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', i[0]['ParentStudy']) | |
6151 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', i[0]['ParentPatient']) | |
6152 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', i[0]['Path']) | |
6153 | |
6154 # Both are "Success" (instead of one "AlreadyStored"), because "OverwriteInstance" is true | |
6155 self.assertEqual('Success', i[0]['Status']) |