Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 352:3d406c0261fc
test /tools/dicom-echo
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 03 Dec 2020 11:51:06 +0100 |
parents | 429cc9d03610 |
children | 49f2943544eb |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
260
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8 # Copyright (C) 2017-2020 Osimis S.A., Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
202
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
14 | 28 import tempfile |
3 | 29 import unittest |
295 | 30 import shutil |
3 | 31 |
11 | 32 from PIL import ImageChops |
3 | 33 from Toolbox import * |
13 | 34 from xml.dom import minidom |
312 | 35 from datetime import datetime |
3 | 36 |
37 _LOCAL = None | |
38 _REMOTE = None | |
306
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39 _DOCKER = False |
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40 |
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41 |
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42 def SetOrthancParameters(local, remote, withinDocker): |
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43 global _LOCAL, _REMOTE, _DOCKER |
3 | 44 _LOCAL = local |
45 _REMOTE = remote | |
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46 _DOCKER = withinDocker |
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47 |
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48 |
14 | 49 def ExtractDicomTags(rawDicom, tags): |
50 with tempfile.NamedTemporaryFile(delete = True) as f: | |
51 f.write(rawDicom) | |
52 f.flush() | |
45 | 53 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 54 |
55 result = [] | |
56 for tag in tags: | |
57 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
58 if match == None: | |
59 result.append('') | |
60 else: | |
61 result.append(match.group(1)) | |
62 | |
63 return result | |
64 | |
65 | |
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66 def CompareLists(a, b): |
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67 if len(a) != len(b): |
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68 return False |
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69 |
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70 for i in range(len(a)): |
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71 d = a[i] - b[i] |
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72 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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73 return False |
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74 |
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75 return True |
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76 |
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77 |
80
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78 def CompareTags(a, b, tagsToIgnore): |
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79 for i in tagsToIgnore: |
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80 if i in a: |
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81 del a[i] |
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82 if i in b: |
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83 del b[i] |
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84 |
123 | 85 if a.keys() == b.keys(): |
86 return True | |
87 else: | |
88 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
89 return False | |
80
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90 |
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91 |
71
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92 def CallFindScu(args): |
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93 p = subprocess.Popen([ FindExecutable('findscu'), |
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94 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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95 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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96 stderr=subprocess.PIPE) |
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97 return p.communicate()[1] |
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98 |
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99 |
142 | 100 def GetMoveScuCommand(): |
101 return [ | |
102 FindExecutable('movescu'), | |
103 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
104 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
105 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
106 _REMOTE['Server'], | |
107 str(_REMOTE['DicomPort']) | |
108 ] | |
109 | |
231
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110 |
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111 def CallMoveScu(args): |
231
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112 try: |
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113 subprocess.check_call(GetMoveScuCommand() + args, |
318
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114 stderr = subprocess.PIPE) |
231
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115 except subprocess.CalledProcessError as e: |
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116 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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117 # that has been introduced in DCMTK 3.6.2. This error code is |
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118 # expected by some tests that try and C-MOVE non-existing |
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119 # DICOM instances. |
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120 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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121 if e.returncode != 69: |
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122 raise e |
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123 |
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124 |
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125 def GenerateTestSequence(): |
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126 return [ |
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127 { |
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128 'StudyDescription': 'Hello^', |
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129 'ReferencedStudySequence' : [ |
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130 { |
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131 'StudyDescription': 'Toto', |
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132 }, |
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133 { |
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134 'StudyDescription': 'Tata', |
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135 }, |
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136 ] |
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137 }, |
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138 { |
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139 'StudyDescription': 'Sébastien^', |
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140 'StudyDate' : '19700202', |
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141 } |
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142 ] |
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143 |
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144 |
3 | 145 class Orthanc(unittest.TestCase): |
146 def setUp(self): | |
83 | 147 if (sys.version_info >= (3, 0)): |
148 # Remove annoying warnings about unclosed socket in Python 3 | |
149 import warnings | |
150 warnings.simplefilter("ignore", ResourceWarning) | |
151 | |
3 | 152 DropOrthanc(_LOCAL) |
153 DropOrthanc(_REMOTE) | |
174 | 154 UninstallLuaCallbacks(_REMOTE) |
312 | 155 #print("%s: In test %s" % (datetime.now(), self._testMethodName)) |
44
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156 |
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157 def AssertSameImages(self, truth, url): |
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158 im = GetImage(_REMOTE, url) |
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159 self.assertTrue(CompareLists(truth, im.getdata())) |
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160 |
3 | 161 |
162 def test_system(self): | |
177 | 163 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
164 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
165 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
166 | |
167 systemInfo = DoGet(_REMOTE, '/system') | |
168 if systemInfo["Version"] == "mainline": | |
169 print "Skipping version checks since you're currently in mainline" | |
170 return | |
171 | |
173 | 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
174 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
175 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
176 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
3 | 177 |
178 def test_upload(self): | |
173 | 179 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
180 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
181 | |
182 sizeDummyCT = 2472 | |
183 sizeOverwrite = 2476 | |
184 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
185 | |
3 | 186 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
183 | 187 self.assertEqual(instance, u['ID']) |
3 | 188 self.assertEqual('Success', u['Status']) |
173 | 189 |
183 | 190 if True: |
191 # New test for Orthanc 1.4.3 | |
192 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
193 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
194 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
195 | |
173 | 196 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
197 s = sizeDummyCT + j | |
198 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
199 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
200 | |
3 | 201 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
203 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
204 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
205 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
173 | 206 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
207 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
208 | |
209 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
3 | 210 self.assertEqual('20070101', i['StudyDate']) |
173 | 211 self.assertEqual('KNIX', i['PatientName']) |
212 | |
213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
214 # Overwriting | |
215 self.assertEqual('Success', u['Status']) | |
216 else: | |
217 self.assertEqual('AlreadyStored', u['Status']) | |
218 | |
219 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
220 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
221 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
222 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
223 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
224 | |
225 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
226 # Overwriting | |
227 self.assertEqual('Success', u['Status']) | |
228 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
229 s2 = sizeOverwrite + j2 | |
230 self.assertNotEqual(s, s2) | |
231 self.assertNotEqual(j, j2) | |
232 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
233 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
234 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
235 self.assertEqual('ANOTHER', i['PatientName']) | |
236 else: | |
237 self.assertEqual('AlreadyStored', u['Status']) | |
238 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
239 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
3 | 240 |
5 | 241 def test_upload_2(self): |
3 | 242 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
243 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
244 self.assertEqual(i, instance['ID']) | |
245 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
246 instance['MainDicomTags']['SOPInstanceUID']) | |
247 | |
248 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
249 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
250 series['MainDicomTags']['SeriesInstanceUID']) | |
251 | |
252 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
253 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
254 study['MainDicomTags']['StudyInstanceUID']) | |
255 | |
256 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
257 self.assertEqual('ozp00SjY2xG', | |
258 patient['MainDicomTags']['PatientID']) | |
259 | |
260 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
261 self.assertEqual(2472, len(dicom)) | |
262 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
263 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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266 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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267 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
3 | 268 |
269 | |
5 | 270 def test_images(self): |
271 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
272 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 273 |
5 | 274 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
275 self.assertEqual("L", im.mode) | |
276 self.assertEqual(512, im.size[0]) | |
277 self.assertEqual(358, im.size[1]) | |
278 | |
279 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
280 self.assertEqual("L", im.mode) | |
281 self.assertEqual(512, im.size[0]) | |
282 self.assertEqual(358, im.size[1]) | |
283 | |
284 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
285 self.assertEqual(512, im.size[0]) | |
286 self.assertEqual(358, im.size[1]) | |
287 | |
288 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
289 self.assertEqual("L", im.mode) | |
290 self.assertEqual(512, im.size[0]) | |
291 self.assertEqual(358, im.size[1]) | |
292 | |
293 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
294 self.assertEqual("L", im.mode) | |
295 self.assertEqual(512, im.size[0]) | |
296 self.assertEqual(358, im.size[1]) | |
297 | |
298 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
299 self.assertEqual(512, im.size[0]) | |
300 self.assertEqual(358, im.size[1]) | |
64 | 301 |
302 # This is Little Endian Explicit | |
303 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
304 | |
6 | 305 |
306 def test_hierarchy(self): | |
307 UploadFolder(_REMOTE, 'Brainix/Epi') | |
308 UploadFolder(_REMOTE, 'Brainix/Flair') | |
309 UploadFolder(_REMOTE, 'Knee/T1') | |
310 UploadFolder(_REMOTE, 'Knee/T2') | |
311 | |
312 p = DoGet(_REMOTE, '/patients') | |
313 s = DoGet(_REMOTE, '/studies') | |
314 t = DoGet(_REMOTE, '/series') | |
315 self.assertEqual(2, len(p)) | |
316 self.assertEqual(2, len(s)) | |
317 self.assertEqual(4, len(t)) | |
318 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
319 | |
320 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
321 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
322 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
323 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
324 | |
325 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
326 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
327 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
328 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
329 | |
330 self.assertTrue(brainixPatient in p) | |
331 self.assertTrue(kneePatient in p) | |
332 self.assertTrue(brainixStudy in s) | |
333 self.assertTrue(kneeStudy in s) | |
334 self.assertTrue(brainixEpi in t) | |
335 self.assertTrue(brainixFlair in t) | |
336 self.assertTrue(kneeT1 in t) | |
337 self.assertTrue(kneeT2 in t) | |
338 | |
339 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
340 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
341 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
342 | |
343 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
344 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
345 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
346 | |
347 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
348 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
349 | |
350 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
351 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
352 | |
353 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
354 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
355 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
356 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
357 | |
358 for patient in p: | |
359 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
360 self.assertEqual(patient, study['ParentPatient']) | |
361 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
362 self.assertEqual(study['ID'], series['ParentStudy']) | |
211 | 363 self.assertEqual('Unknown', series['Status']) |
6 | 364 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
365 self.assertEqual(series['ID'], instance['ParentSeries']) | |
366 | |
367 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
368 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
369 | |
370 | |
371 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
372 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
373 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
374 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
375 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
376 self.assertEqual(None, r) | |
377 | |
378 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
379 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
380 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
381 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
382 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
383 self.assertEqual('Study', r['Type']) | |
384 self.assertEqual(kneeStudy, r['ID']) | |
385 | |
386 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
387 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
388 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
389 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
390 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
391 self.assertEqual('Series', r['Type']) | |
392 self.assertEqual(kneeT1, r['ID']) | |
393 | |
394 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
395 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
396 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
397 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
398 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
399 self.assertEqual(None, r) | |
400 | |
401 DropOrthanc(_REMOTE) | |
402 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
403 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 404 |
213
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405 def test_delete_cascade(self): |
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406 # make sure deleting the last instance of a study deletes the series, study and patient |
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407 |
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408 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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409 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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412 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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413 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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414 |
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415 DoDelete(_REMOTE, '/instances/%s' % a) |
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416 |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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419 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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420 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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421 |
7 | 422 |
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423 def test_multiframe(self): |
7 | 424 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
425 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
426 | |
427 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
428 self.assertEqual("L", im.mode) | |
429 self.assertEqual(512, im.size[0]) | |
430 self.assertEqual(512, im.size[1]) | |
431 | |
432 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
433 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
434 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
435 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
437 | |
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438 |
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439 def test_changes(self): |
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440 # Check emptiness |
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441 c = DoGet(_REMOTE, '/changes') |
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442 self.assertEqual(0, len(c['Changes'])) |
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443 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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444 self.assertTrue(c['Done']) |
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445 c = DoGet(_REMOTE, '/changes?last') |
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446 self.assertEqual(0, len(c['Changes'])) |
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447 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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448 self.assertTrue(c['Done']) |
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449 |
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450 # Add 1 instance |
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451 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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452 c = DoGet(_REMOTE, '/changes') |
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453 begin = c['Last'] |
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454 self.assertEqual(4, len(c['Changes'])) |
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455 self.assertTrue(c['Done']) |
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456 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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457 |
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458 c = DoGet(_REMOTE, '/changes?last') |
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459 self.assertEqual(1, len(c['Changes'])) |
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460 self.assertEqual(begin, c['Last']) |
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461 self.assertTrue(c['Done']) |
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462 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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463 self.assertEqual(1, len(c['Changes'])) |
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464 self.assertEqual(begin, c['Last']) |
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465 self.assertTrue(c['Done']) |
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466 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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467 self.assertEqual(1, len(c['Changes'])) |
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468 self.assertEqual(begin - 1, c['Last']) |
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469 self.assertFalse(c['Done']) |
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470 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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471 self.assertEqual(1, len(c['Changes'])) |
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472 self.assertEqual(begin - 2, c['Last']) |
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473 self.assertFalse(c['Done']) |
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474 |
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475 UploadFolder(_REMOTE, 'Knee/T1') |
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476 UploadFolder(_REMOTE, 'Knee/T2') |
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477 since = begin |
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478 countPatients = 0 |
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479 countStudies = 0 |
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480 countSeries = 0 |
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481 countInstances = 0 |
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482 completed = 0 |
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483 while True: |
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484 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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485 since = c['Last'] |
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486 for i in c['Changes']: |
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487 if i['ResourceType'] == 'Instance': |
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488 countInstances += 1 |
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489 if i['ResourceType'] == 'Patient': |
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490 countPatients += 1 |
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491 if i['ResourceType'] == 'Study': |
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492 countStudies += 1 |
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493 if i['ResourceType'] == 'Series': |
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494 countSeries += 1 |
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495 if i['ChangeType'] == 'NewInstance': |
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496 countInstances += 1 |
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497 if i['ChangeType'] == 'NewPatient': |
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498 countPatients += 1 |
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499 if i['ChangeType'] == 'NewStudy': |
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500 countStudies += 1 |
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501 if i['ChangeType'] == 'NewSeries': |
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502 countSeries += 1 |
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503 if i['ChangeType'] == 'CompletedSeries': |
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504 completed += 1 |
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505 self.assertTrue('ID' in i) |
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506 self.assertTrue('Path' in i) |
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507 self.assertTrue('Seq' in i) |
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508 if c['Done']: |
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509 break |
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510 |
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511 self.assertEqual(2 * 50, countInstances) |
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512 self.assertEqual(2 * 1, countPatients) |
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513 self.assertEqual(2 * 1, countStudies) |
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514 self.assertEqual(2 * 2, countSeries) |
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515 self.assertEqual(0, completed) |
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516 |
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517 |
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518 def test_archive(self): |
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519 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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520 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
192 | 521 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
522 | |
523 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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524 self.assertEqual(2, len(z.namelist())) |
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525 |
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526 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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527 self.assertEqual(2, len(z.namelist())) |
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528 |
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529 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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530 self.assertEqual(1, len(z.namelist())) |
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531 |
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532 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
192 | 533 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
534 | |
535 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
8
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536 self.assertEqual(2, len(z.namelist())) |
192 | 537 |
538 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
539 'Resources' : [ brainix, knee ] | |
540 }) | |
541 self.assertEqual(3, len(z.namelist())) | |
542 | |
8
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543 |
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544 def test_media_archive(self): |
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545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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547 |
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548 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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549 self.assertEqual(3, len(z.namelist())) |
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550 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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551 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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552 self.assertTrue('DICOMDIR' in z.namelist()) |
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553 |
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554 try: |
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555 os.remove('/tmp/DICOMDIR') |
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|
556 except: |
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557 # The file does not exist |
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558 pass |
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559 |
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560 z.extract('DICOMDIR', '/tmp') |
45 | 561 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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562 stderr = subprocess.STDOUT).split('\n') |
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563 self.assertEqual(3, len(a)) |
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564 self.assertTrue(a[0].startswith('Warning')) |
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565 self.assertEqual('BasicDirectory', a[1]) |
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566 self.assertEqual('', a[2]) |
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567 |
45 | 568 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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569 stderr = subprocess.STDOUT).split('\n') |
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570 self.assertEqual(1, len(a)) |
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571 self.assertEqual('', a[0]) |
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572 |
45 | 573 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
8
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574 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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575 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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576 |
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577 os.remove('/tmp/DICOMDIR') |
10 | 578 |
579 | |
580 def test_protection(self): | |
581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
582 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
583 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
584 a = DoGet(_REMOTE, '/patients')[0] | |
585 b = DoGet(_REMOTE, '/patients')[1] | |
586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
587 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
588 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
589 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
590 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
591 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
592 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
593 | |
594 | |
12 | 595 def test_raw_tags(self): |
10 | 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
597 | |
598 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
599 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
600 | |
601 s = '/instances/%s/content/' % i | |
602 | |
603 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
604 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
605 | |
606 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
607 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
608 | |
609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
610 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
611 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
612 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
613 | |
614 for i in DoGet(_REMOTE, '/instances'): | |
615 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
616 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
617 | |
618 | |
619 def test_raw_tags_mdn(self): | |
620 # Bug reported by Cyril Paulus | |
621 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
622 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
623 | |
624 | |
625 def test_modify_instance(self): | |
626 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
627 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
628 json.dumps({ | |
629 "Replace" : { | |
630 "PatientName" : "hello", | |
631 #"PatientID" : "world" | |
632 }, | |
633 "Remove" : [ "StationName" ], | |
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
634 "RemovePrivateTags" : True |
10 | 635 }), |
636 'application/json') | |
637 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
638 | |
639 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
640 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 641 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 642 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
643 | |
644 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
645 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
646 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
647 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
648 | |
649 | |
650 def test_modify_series(self): | |
651 # Upload 4 images from the same series | |
652 for i in range(4): | |
653 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
654 | |
655 origSeries = DoGet(_REMOTE, '/series')[0] | |
656 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
657 '{"Replace":{"PatientName":"Jodogne"}}', | |
658 'application/json')['ID'] | |
659 | |
660 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
661 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
662 self.assertEqual(4, len(instances)) | |
663 for i in instances: | |
664 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
665 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
666 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
667 | |
668 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
669 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
670 | |
671 | |
672 def test_modify_study(self): | |
673 # Upload 4 images from the 2 series of the same study | |
674 for i in range(4): | |
675 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
676 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
677 | |
678 origStudy = DoGet(_REMOTE, '/studies')[0] | |
679 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
680 '{"Replace":{"PatientName":"Jodogne"}}', | |
681 'application/json')['ID'] | |
682 | |
683 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
684 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
685 self.assertEqual(2, len(series)) | |
686 for s in series: | |
687 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
688 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
689 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
690 | |
691 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
692 for i in instances: | |
693 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
694 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
695 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
696 | |
697 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
698 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
699 | |
700 | |
701 def test_anonymize_series(self): | |
702 # Upload 4 images from the same series | |
703 for i in range(4): | |
704 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
705 | |
706 origSeries = DoGet(_REMOTE, '/series')[0] | |
707 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
708 '{}', | |
709 'application/json')['ID'] | |
710 | |
711 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
712 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
713 self.assertEqual(4, len(instances)) | |
714 for i in instances: | |
715 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
716 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
717 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
718 | |
719 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
720 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
721 | |
722 | |
723 def test_anonymize_study(self): | |
724 # Upload 4 images from the 2 series of the same study | |
725 for i in range(4): | |
726 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
727 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
728 | |
729 origStudy = DoGet(_REMOTE, '/studies')[0] | |
730 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
731 '{"Replace":{"PatientName":"Jodogne"}}', | |
732 'application/json')['ID'] | |
733 | |
734 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
735 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
736 self.assertEqual(2, len(series)) | |
737 for s in series: | |
738 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
739 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
740 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
741 | |
742 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
743 for i in instances: | |
744 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
745 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
746 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
747 | |
748 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
749 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 750 |
751 | |
752 | |
753 def test_storescu(self): | |
754 # Check emptiness | |
755 e = DoGet(_REMOTE, '/exports') | |
756 self.assertEqual(0, len(e['Exports'])) | |
757 self.assertEqual(0, e['Last']) | |
758 self.assertTrue(e['Done']) | |
759 e = DoGet(_REMOTE, '/exports?last') | |
760 self.assertEqual(0, len(e['Exports'])) | |
761 self.assertEqual(0, e['Last']) | |
762 self.assertTrue(e['Done']) | |
763 | |
764 # Add 1 instance | |
765 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
766 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
767 | |
768 # Export the instance | |
769 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
770 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
771 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
772 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
773 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
774 | |
775 e = DoGet(_REMOTE, '/exports') | |
776 self.assertEqual(1, len(e['Exports'])) | |
777 self.assertTrue(e['Done']) | |
778 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
779 e = DoGet(_REMOTE, '/exports?limit=1') | |
780 self.assertEqual(1, len(e['Exports'])) | |
781 self.assertTrue(e['Done']) | |
782 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
783 e = DoGet(_REMOTE, '/exports?last') | |
784 self.assertEqual(1, len(e['Exports'])) | |
785 self.assertTrue(e['Done']) | |
786 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
787 seqInstance = e['Last'] | |
788 | |
789 # Export the series | |
790 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
791 | |
792 e = DoGet(_REMOTE, '/exports') | |
793 self.assertEqual(2, len(e['Exports'])) | |
794 self.assertTrue(e['Done']) | |
795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
796 seqSeries = e['Last'] | |
797 self.assertNotEqual(seqInstance, seqSeries) | |
798 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
799 self.assertEqual(1, len(e['Exports'])) | |
800 self.assertFalse(e['Done']) | |
801 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
802 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
803 self.assertEqual(1, len(e['Exports'])) | |
804 self.assertTrue(e['Done']) | |
805 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
806 e = DoGet(_REMOTE, '/exports?last') | |
807 self.assertEqual(1, len(e['Exports'])) | |
808 self.assertTrue(e['Done']) | |
809 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
810 | |
811 # Export the study | |
812 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
813 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
814 | |
815 # Export the patient | |
816 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
818 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
819 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
820 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
821 | |
822 e = DoGet(_REMOTE, '/exports') | |
823 self.assertEqual(4, len(e['Exports'])) | |
824 self.assertTrue(e['Done']) | |
825 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
826 seqPatient = e['Last'] | |
827 self.assertNotEqual(seqInstance, seqSeries) | |
828 self.assertNotEqual(seqSeries, seqStudy) | |
829 self.assertNotEqual(seqStudy, seqPatient) | |
830 self.assertTrue(seqInstance < seqSeries) | |
831 self.assertTrue(seqSeries < seqStudy) | |
832 self.assertTrue(seqStudy < seqPatient) | |
833 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
834 self.assertEqual(1, len(e['Exports'])) | |
835 self.assertFalse(e['Done']) | |
836 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
837 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
838 self.assertEqual(1, len(e['Exports'])) | |
839 self.assertFalse(e['Done']) | |
840 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
841 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
842 self.assertEqual(1, len(e['Exports'])) | |
843 self.assertFalse(e['Done']) | |
844 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
845 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
846 self.assertEqual(1, len(e['Exports'])) | |
847 self.assertTrue(e['Done']) | |
848 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
849 e = DoGet(_REMOTE, '/exports?last') | |
850 self.assertEqual(1, len(e['Exports'])) | |
851 self.assertTrue(e['Done']) | |
852 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
853 | |
854 | |
855 # Check the content of the logged information | |
856 e = DoGet(_REMOTE, '/exports')['Exports'] | |
857 | |
858 if 'PatientID' in e[0]: | |
859 # Since Orthanc 0.8.6 | |
860 patient = 'PatientID' | |
861 study = 'StudyInstanceUID' | |
862 series = 'SeriesInstanceUID' | |
863 instance = 'SOPInstanceUID' | |
864 else: | |
865 # Up to Orthanc 0.8.5 | |
866 patient = 'PatientId' | |
867 study = 'StudyInstanceUid' | |
868 series = 'SeriesInstanceUid' | |
869 instance = 'SopInstanceUid' | |
870 | |
871 for k in range(4): | |
872 self.assertTrue('Date' in e[k]) | |
873 self.assertTrue('Seq' in e[k]) | |
874 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
875 | |
876 self.assertEqual(10, len(e[0])) | |
877 self.assertEqual('Instance', e[0]['ResourceType']) | |
878 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
879 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
881 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
882 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
883 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
884 | |
885 self.assertEqual(9, len(e[1])) | |
886 self.assertEqual('Series', e[1]['ResourceType']) | |
887 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
888 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
889 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
890 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
891 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
892 | |
893 self.assertEqual(8, len(e[2])) | |
894 self.assertEqual('Study', e[2]['ResourceType']) | |
895 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
896 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
897 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
898 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
899 | |
900 self.assertEqual(7, len(e[3])) | |
901 self.assertEqual('Patient', e[3]['ResourceType']) | |
902 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
903 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
904 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
905 | |
906 DropOrthanc(_REMOTE) | |
907 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
908 | |
909 | |
910 def test_store_peer(self): | |
911 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
912 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
913 | |
914 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
915 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
916 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
917 | |
918 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
919 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
920 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
921 | |
922 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
923 | |
924 DropOrthanc(_REMOTE) | |
925 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
926 | |
927 | |
928 def test_bulk_storescu(self): | |
929 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
930 | |
931 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
932 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
933 | |
934 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
935 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
936 | |
937 DropOrthanc(_LOCAL) | |
938 | |
939 # Send using patient's UUID | |
940 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
941 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
942 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
943 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
944 | |
945 | |
946 def test_color(self): | |
947 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
948 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
949 self.assertEqual("RGB", im.mode) | |
950 self.assertEqual(41, im.size[0]) | |
951 self.assertEqual(41, im.size[1]) | |
952 | |
953 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 954 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 955 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
956 | |
957 | |
12 | 958 def test_faking_ruby_put(self): |
959 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
960 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
961 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
962 a = DoGet(_REMOTE, '/patients')[0] | |
963 b = DoGet(_REMOTE, '/patients')[1] | |
964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
966 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
968 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
969 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
970 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
971 | |
972 | |
973 def test_faking_ruby_delete(self): | |
974 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
975 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
976 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
977 a = DoGet(_REMOTE, '/patients')[0] | |
978 b = DoGet(_REMOTE, '/patients')[1] | |
979 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
980 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
981 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
983 | |
984 | |
985 def test_faking_google_put(self): | |
986 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
987 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
988 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
989 a = DoGet(_REMOTE, '/patients')[0] | |
990 b = DoGet(_REMOTE, '/patients')[1] | |
991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
993 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
995 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
996 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
997 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
998 | |
999 | |
1000 def test_faking_google_delete(self): | |
1001 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1002 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1003 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1004 a = DoGet(_REMOTE, '/patients')[0] | |
1005 b = DoGet(_REMOTE, '/patients')[1] | |
1006 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1007 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1008 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
1009 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1010 | |
1011 | |
1012 def test_lua(self): | |
1013 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
1014 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
1015 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
1016 | |
1017 | |
1018 def test_metadata(self): | |
1019 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
1020 p = DoGet(_REMOTE, '/patients')[0] | |
1021 i = DoGet(_REMOTE, '/instances')[0] | |
1022 | |
1023 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1024 self.assertEqual(1, len(m)) | |
1025 self.assertEqual('LastUpdate', m[0]) | |
1026 | |
1027 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
145 | 1028 self.assertEqual(8, len(m)) |
12 | 1029 self.assertTrue('IndexInSeries' in m) |
1030 self.assertTrue('ReceptionDate' in m) | |
1031 self.assertTrue('RemoteAET' in m) | |
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1032 self.assertTrue('Origin' in m) |
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1033 self.assertTrue('TransferSyntax' in m) |
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1034 self.assertTrue('SopClassUid' in m) |
145 | 1035 self.assertTrue('RemoteIP' in m) |
1036 self.assertTrue('HttpUsername' in m) | |
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1037 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1038 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1039 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1040 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1041 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 1042 |
1043 # Play with custom metadata | |
1044 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
1045 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1046 self.assertEqual(2, len(m)) | |
1047 self.assertTrue('LastUpdate' in m) | |
1048 self.assertTrue('5555' in m) | |
1049 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1050 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
1051 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
1052 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
1053 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
1054 self.assertEqual(1, len(m)) | |
1055 self.assertTrue('LastUpdate' in m) | |
13 | 1056 |
1057 | |
1058 def test_statistics(self): | |
1059 # Upload 16 instances | |
1060 for i in range(4): | |
1061 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1062 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1063 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1064 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1065 | |
1066 s = DoGet(_REMOTE, '/statistics') | |
1067 self.assertEqual(16, s['CountInstances']) | |
1068 self.assertEqual(2, s['CountPatients']) | |
1069 self.assertEqual(2, s['CountStudies']) | |
1070 self.assertEqual(4, s['CountSeries']) | |
1071 d = int(s['TotalUncompressedSize']) | |
1072 | |
1073 e = 0 | |
1074 for patient in DoGet(_REMOTE, '/patients'): | |
1075 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
1076 self.assertEqual(8, s['CountInstances']) | |
1077 self.assertEqual(1, s['CountStudies']) | |
1078 self.assertEqual(2, s['CountSeries']) | |
1079 e += int(s['UncompressedSize']) | |
1080 | |
1081 for study in DoGet(_REMOTE, '/studies'): | |
1082 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
1083 self.assertEqual(8, s['CountInstances']) | |
1084 self.assertEqual(2, s['CountSeries']) | |
1085 e += int(s['UncompressedSize']) | |
1086 | |
1087 for series in DoGet(_REMOTE, '/series'): | |
1088 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
1089 self.assertEqual(4, s['CountInstances']) | |
1090 e += int(s['UncompressedSize']) | |
1091 | |
1092 self.assertEqual(3 * d, e) | |
1093 | |
1094 | |
1095 def test_custom_attachment(self): | |
1096 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
1097 patient = DoGet(_REMOTE, '/patients')[0] | |
1098 instance = DoGet(_REMOTE, '/instances')[0] | |
1099 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1100 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1101 | |
1102 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1103 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1104 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1105 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1106 | |
1107 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1108 hello = 'hellohellohellohellohellohellohellohellohello' | |
1109 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1110 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1111 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1112 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1113 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1114 | |
1115 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1116 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1117 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1118 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1119 size + | |
1120 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1121 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1122 | |
1123 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1124 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1125 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1126 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1127 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1128 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1129 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1130 | |
1131 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1132 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1133 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1134 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1135 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1136 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1137 | |
1138 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1139 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1140 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1141 | |
1142 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1143 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1144 | |
1145 | |
1146 def test_incoming_storescu(self): | |
1147 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1148 subprocess.check_call([ FindExecutable('storescu'), |
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1149 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1150 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1151 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1152 | |
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1153 i = DoGet(_REMOTE, '/instances') |
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1154 self.assertEqual(1, len(i)) |
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1155 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
145 | 1156 self.assertEqual(8, len(m)) |
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1157 self.assertTrue('IndexInSeries' in m) |
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1158 self.assertTrue('ReceptionDate' in m) |
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1159 self.assertTrue('RemoteAET' in m) |
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1160 self.assertTrue('Origin' in m) |
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1161 self.assertTrue('TransferSyntax' in m) |
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1162 self.assertTrue('SopClassUid' in m) |
145 | 1163 self.assertTrue('RemoteIP' in m) |
1164 self.assertTrue('CalledAET' in m) | |
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1165 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1166 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1167 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1168 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1169 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1170 |
13 | 1171 |
1172 def test_incoming_findscu(self): | |
1173 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1174 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1175 | |
1176 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1177 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1178 self.assertEqual(2, len(patientNames)) | |
1179 self.assertTrue('Test Patient BG ' in patientNames) | |
1180 self.assertTrue('Anonymized' in patientNames) | |
1181 | |
1182 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1183 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1184 self.assertEqual(2, len(series)) | |
1185 self.assertTrue('20070208' in series) | |
1186 self.assertTrue('19980312' in series) | |
1187 | |
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1188 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'Modality=MR\\XA' ]) |
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1189 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1190 self.assertEqual(1, len(series)) |
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1191 self.assertTrue('19980312' in series) |
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1192 |
13 | 1193 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1194 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1195 self.assertEqual(1, len(series)) | |
1196 | |
1197 # Test the "CaseSentitivePN" flag (false by default) | |
1198 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1199 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1200 self.assertEqual(1, len(series)) | |
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1201 |
70 | 1202 # Test range search (buggy if Orthanc <= 0.9.6) |
1203 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1204 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1205 self.assertEqual(2, len(studies)) | |
1206 self.assertTrue('20070208' in studies) | |
1207 self.assertTrue('19980312' in studies) | |
1208 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1209 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1210 self.assertEqual(1, len(studies)) | |
1211 self.assertTrue('19980312' in studies) | |
1212 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1213 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1214 self.assertEqual(1, len(studies)) | |
1215 self.assertTrue('19980312' in studies) | |
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1216 |
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1217 # Test that "Retrieve AE Title (0008,0054)" is present, which |
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1218 # was *not* the case in Orthanc <= 1.7.2 |
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1219 i = CallFindScu([ '-k', '0008,0052=INSTANCE' ]) |
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1220 instances = re.findall('\(0008,0054\).*?\[\s*(.*?)\s*\]', i) |
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1221 self.assertEqual(2, len(instances)) |
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1222 self.assertEqual('ORTHANC', instances[0].strip()) |
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1223 self.assertEqual('ORTHANC', instances[1].strip()) |
13 | 1224 |
1225 | |
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1226 def test_incoming_findscu_2(self): |
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1227 # This test fails if "LookupMode_DatabaseOnly" is used |
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1228 # (sequences are not available in this mode, and only main |
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1229 # DICOM tags are returned) |
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1230 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1231 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1232 |
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1233 # Test returning sequence values (only since Orthanc 0.9.5) |
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1234 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1235 sequences = re.findall('\(0008,2112\)', i) |
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1236 self.assertEqual(1, len(sequences)) |
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1237 |
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1238 # Test returning a non-main DICOM tag, |
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1239 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1240 # "MEDPC" in "ColorTestImageJ.dcm" |
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1241 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1242 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1243 self.assertEqual(1, len(tags)) |
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1244 |
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1245 |
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1246 def test_incoming_findscu_3(self): |
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1247 # This test fails if "LookupMode_DatabaseOnly" or |
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1248 # "LookupMode_DiskOnAnswer" is used, as |
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1249 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1250 # tag, as thus a constraint cannot be applied to it |
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1251 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1252 |
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1253 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1254 sequences = re.findall('\(0018,1010\)', i) |
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1255 self.assertEqual(1, len(sequences)) |
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1256 |
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1257 |
13 | 1258 def test_incoming_movescu(self): |
1259 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
137
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1260 |
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1261 # No matching patient, so no job is created |
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1262 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1263 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1264 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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1265 |
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1266 # 1 Matching patient, track the job |
138 | 1267 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
1268 '--patient', | |
1269 '-k', '0008,0052=PATIENT', | |
1270 '-k', 'PatientID=12345678' | |
1271 ]))) | |
13 | 1272 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
1273 | |
1274 | |
1275 def test_findscu(self): | |
1276 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1277 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1278 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1279 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1280 | |
1281 # Test the "find-patient" level | |
1282 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1283 self.assertEqual(1, len(p)) | |
1284 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1285 | |
1286 # Test wildcards constraints. The "LO" value representation | |
1287 # for PatientID is always case-sensitive, but the "PN" for | |
1288 # PatientName might depend on the implementation: | |
1289 # "GenerateConfigurationForTests.py" will force it to be case | |
1290 # insensitive (which was the default until Orthanc 0.8.6). | |
1291 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1292 self.assertEqual(1, len(p)) | |
1293 | |
1294 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1295 self.assertEqual(1, len(p)) | |
1296 | |
1297 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1298 self.assertEqual(1, len(p)) | |
1299 | |
1300 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1301 self.assertEqual(1, len(p)) | |
1302 | |
1303 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1304 self.assertEqual(0, len(p)) | |
1305 | |
1306 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1307 self.assertEqual(0, len(p)) | |
1308 | |
1309 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1310 self.assertEqual(0, len(p)) | |
1311 | |
1312 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1313 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1314 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1315 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1316 | |
1317 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1318 self.assertEqual(2, len(p)) | |
1319 | |
1320 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1321 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1322 self.assertEqual(1, len(s)) | |
1323 self.assertEqual('20070208', s[0]['StudyDate']) | |
1324 | |
1325 # Test range searches | |
1326 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1327 'StudyDate' : '-20070101' }) | |
1328 self.assertEqual(0, len(t)) | |
1329 | |
1330 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1331 'StudyDate' : '20090101-' }) | |
1332 self.assertEqual(0, len(t)) | |
1333 | |
1334 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1335 'StudyDate' : '20070101-' }) | |
1336 self.assertEqual(1, len(t)) | |
1337 | |
1338 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1339 'StudyDate' : '-20090101' }) | |
1340 self.assertEqual(1, len(t)) | |
1341 | |
1342 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1343 'StudyDate' : '20070207-20070207' }) | |
1344 self.assertEqual(0, len(t)) | |
1345 | |
1346 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1347 'StudyDate' : '20070208-20070208' }) | |
1348 self.assertEqual(1, len(t)) | |
1349 | |
1350 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1351 'StudyDate' : '20070209-20070209' }) | |
1352 self.assertEqual(0, len(t)) | |
1353 | |
1354 # Test the ModalitiesInStudy tag | |
1355 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1356 'PatientID' : 'B9uTHKOZ', | |
1357 'ModalitiesInStudy' : 'US' }) | |
1358 self.assertEqual(0, len(t)) | |
1359 | |
1360 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1361 'PatientID' : 'B9uTHKOZ', | |
1362 'ModalitiesInStudy' : 'CT' }) | |
1363 self.assertEqual(1, len(t)) | |
1364 | |
1365 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1366 'PatientID' : 'B9uTHKOZ', | |
1367 'ModalitiesInStudy' : 'US\\CT' }) | |
1368 self.assertEqual(1, len(t)) | |
1369 | |
1370 # Test the "find-series" level | |
1371 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1372 'PatientID' : 'B9uTHKOZ', | |
1373 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1374 self.assertEqual(1, len(t)) | |
1375 | |
1376 # Test "\" separator | |
1377 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1378 'PatientID' : 'B9uTHKOZ', | |
1379 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1380 'Modality' : 'MR\\CT\\US' }) | |
1381 self.assertEqual(1, len(t)) | |
1382 | |
1383 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1384 'PatientID' : 'B9uTHKOZ', | |
1385 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1386 'Modality' : 'MR\\US' }) | |
1387 self.assertEqual(0, len(t)) | |
1388 | |
1389 | |
1390 def test_update_modalities(self): | |
1391 try: | |
1392 DoDelete(_REMOTE, '/modalities/toto') | |
1393 except: | |
1394 pass | |
1395 try: | |
1396 DoDelete(_REMOTE, '/modalities/tata') | |
1397 except: | |
1398 pass | |
1399 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
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1400 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/modalities/toto')) |
13 | 1401 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) |
116 | 1402 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1403 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1404 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
121
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1405 DoDelete(_REMOTE, '/modalities/tata') |
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1406 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
128 | 1407 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
182
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1408 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1409 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1410 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1411 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
116 | 1412 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1413 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1414 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
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1416 # New in Orthanc 1.8.1 |
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1417 self.assertTrue('configuration' in DoGet(_REMOTE, '/modalities/tata')) |
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1418 self.assertEqual(modalitiesReadback['tata'], DoGet(_REMOTE, '/modalities/tata/configuration')) |
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1419 |
13 | 1420 DoDelete(_REMOTE, '/modalities/toto') |
1421 DoDelete(_REMOTE, '/modalities/tata') | |
1422 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1423 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1424 | |
1425 | |
1426 def test_update_peers(self): | |
1427 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1428 try: | |
1429 DoDelete(_REMOTE, '/peers/toto') | |
1430 except: | |
1431 pass | |
1432 try: | |
1433 DoDelete(_REMOTE, '/peers/tata') | |
1434 except: | |
1435 pass | |
1436 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
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1437 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/peers/toto')) |
13 | 1438 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) |
214 | 1439 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
1440 'Username': 'user', | |
1441 'Password' : 'pass', | |
1442 'RemoteSelf' : 'self' }) | |
128 | 1443 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
1444 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
1445 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
1446 self.assertEqual('user', peersReadback['tata']['Username']) | |
214 | 1447 |
1448 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
1449 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
1450 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
1451 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
1452 else: | |
1453 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
1454 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
1455 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
1456 | |
128 | 1457 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
1458 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
1459 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
214 | 1460 |
13 | 1461 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
1462 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1463 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1464 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
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1466 # New in Orthanc 1.8.1 |
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1467 self.assertTrue('configuration' in DoGet(_REMOTE, '/peers/tata')) |
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1468 self.assertEqual(peersReadback['tata'], DoGet(_REMOTE, '/peers/tata/configuration')) |
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1469 |
13 | 1470 DoDelete(_REMOTE, '/peers/toto') |
1471 DoDelete(_REMOTE, '/peers/tata') | |
1472 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1473 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1474 | |
1475 | |
1476 def test_mesterhazy_modification(self): | |
1477 # When I modify a series ( eg. curl | |
1478 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1479 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1480 # series is added to a new Study, instead of the existing | |
1481 # Study. Fixed in Orthanc 0.7.5 | |
1482 | |
1483 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1484 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1485 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1486 | |
1487 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1488 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1489 | |
1490 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1491 | |
1492 | |
1493 def test_create(self): | |
1494 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1495 json.dumps({ | |
1496 'PatientName' : 'Jodogne', | |
1497 'Modality' : 'CT', | |
58 | 1498 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1499 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1500 })) | |
1501 | |
1502 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1503 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1504 | |
1505 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1506 self.assertEqual((5, 5), png.size) | |
1507 | |
38 | 1508 j = DoGet(_REMOTE, i['Path']) |
1509 self.assertEqual('Instance', j['Type']) | |
1510 self.assertEqual(j['ID'], i['ID']) | |
1511 | |
13 | 1512 |
1513 def test_pilates(self): | |
1514 # "SCU failed error when accessing orthanc with osirix" by | |
1515 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1516 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1517 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1518 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1519 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1520 | |
1521 | |
1522 def test_shared_tags(self): | |
1523 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1524 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1525 p = DoGet(_REMOTE, '/patients')[0] | |
1526 | |
1527 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1528 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1529 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1530 |
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1531 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1532 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1533 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1534 |
13 | 1535 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
1536 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1537 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1538 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1539 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1540 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1541 | |
1542 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1543 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1544 | |
1545 | |
1546 def test_modules(self): | |
1547 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1548 p = DoGet(_REMOTE, '/patients')[0] | |
1549 s = DoGet(_REMOTE, '/studies')[0] | |
1550 t = DoGet(_REMOTE, '/series')[0] | |
1551 | |
1552 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1553 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1554 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1555 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1556 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1557 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1558 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1559 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1560 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1561 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1562 | |
1563 | |
1564 def test_auto_directory(self): | |
1565 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1566 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1567 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1568 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1569 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1570 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1571 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1572 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1573 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1574 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1575 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1576 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1577 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1578 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1579 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1580 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1581 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1582 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1583 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1584 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1585 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1586 |
1587 | |
1588 def test_echo(self): | |
1589 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
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1590 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/nope/echo')) |
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1591 |
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1592 # New in Orthanc 1.8.1 |
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1593 DoPost(_REMOTE, '/tools/dicom-echo', [ |
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1594 _LOCAL["DicomAet"], _LOCAL["Server"], _LOCAL["DicomPort"] ]) |
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1595 DoPost(_REMOTE, '/tools/dicom-echo', DoGet(_REMOTE, '/modalities/orthanctest/configuration')) |
13 | 1596 |
1597 | |
1598 def test_xml(self): | |
1599 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1600 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1601 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1602 self.assertEqual(len(items), len(json)) | |
1603 | |
1604 self.assertTrue('dicom-conformance' in json) | |
1605 | |
1606 ok = False | |
1607 for i in items: | |
1608 if i.childNodes[0].data == 'dicom-conformance': | |
1609 ok = True | |
1610 self.assertTrue(ok) | |
1611 | |
1612 | |
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1613 def test_googlecode_issue_16(self): |
13 | 1614 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1615 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1616 self.assertEqual('0018,1063', t) | |
1617 | |
1618 | |
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1619 def test_googlecode_issue_22(self): |
13 | 1620 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1621 a = [ | |
1622 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1623 "c69eee9a51eea3e8611e82e578897254", | |
1624 "315666be83e2d0111c77bc0996d84901", | |
1625 "3e27aa959d911172c48a1436443c72b1", | |
1626 "958642c9e7e9d232d3869faff546058c", | |
1627 "5e7ea8e3e4230cae707d143481355c59", | |
1628 "eda37f83558d858a596175aed8b2ad47", | |
1629 "486713bd2895c4ecbe0e97715ac7f80a", | |
1630 "091ef729eb169e67da8a0faa9631f9a8", | |
1631 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1632 "e2f39e85896fe58876654b94cd0b5013", | |
1633 "6fd2129e4950abbe1be053bc814d5da8", | |
1634 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1635 "746f808582156734dd6b6fdfd3a0b72c", | |
1636 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1637 "806b8b3e300c615099c11a5ec23465aa", | |
1638 "7c836aa298ba6eef96434579af631a11", | |
1639 "a0357dc9f4f72d73a885c33d7c287446", | |
1640 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1641 "8b114c526b8cbed6cad8a3248b7b480c", | |
1642 "44e6670f127e612a2b4aa60a0d207698", | |
1643 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1644 "95c796c2fa8f59018b15cf2987b1f79b", | |
1645 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1646 ] | |
1647 | |
1648 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1649 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1650 | |
1651 for i in range(len(a)): | |
1652 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1653 | |
1654 | |
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1655 def test_googlecode_issue_19(self): |
21
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1656 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1657 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1658 | |
1659 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
304 | 1660 if not HasGdcmPlugin(_REMOTE): |
299
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1661 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1662 |
1663 | |
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1664 def test_googlecode_issue_37(self): |
13 | 1665 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1666 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1667 | |
1668 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1669 'CaseSensitive' : True, | |
1670 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1671 self.assertEqual(1, len(a)) | |
14 | 1672 |
1673 | |
1674 def test_rest_find(self): | |
1675 # Upload 8 instances | |
1676 for i in range(2): | |
1677 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1678 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1679 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1680 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1681 | |
1682 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1683 'CaseSensitive' : False, | |
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1684 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1685 self.assertEqual(1, len(a)) |
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1686 |
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1687 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1688 'CaseSensitive' : False, |
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1689 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1690 self.assertEqual(2, len(a)) |
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1691 |
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1692 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1693 'CaseSensitive' : False, |
14 | 1694 'Query' : { 'PatientName' : '*n*' }}) |
1695 self.assertEqual(2, len(a)) | |
1696 | |
1697 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1698 'CaseSensitive' : True, | |
1699 'Query' : { 'PatientName' : '*n*' }}) | |
1700 self.assertEqual(0, len(a)) | |
1701 | |
1702 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1703 'Level' : 'Patient', | |
1704 'CaseSensitive' : False, | |
1705 'Query' : { 'PatientName' : '*ne*' }}) | |
1706 self.assertEqual(1, len(a)) | |
1707 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1708 | |
1709 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1710 'CaseSensitive' : True, | |
1711 'Query' : { 'PatientName' : '*ne*' }}) | |
1712 self.assertEqual(0, len(a)) | |
1713 | |
1714 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1715 'CaseSensitive' : True, | |
1716 'Query' : { 'PatientName' : '*NE*' }}) | |
1717 self.assertEqual(1, len(a)) | |
1718 | |
1719 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1720 'CaseSensitive' : True, | |
1721 'Query' : { 'PatientName' : '*NE*' }}) | |
1722 self.assertEqual(2, len(a)) | |
1723 | |
1724 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1725 'CaseSensitive' : True, | |
1726 'Query' : { 'PatientName' : '*NE*' }}) | |
1727 self.assertEqual(4, len(a)) | |
1728 | |
1729 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1730 self.assertEqual(2, len(a)) | |
1731 | |
1732 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1733 self.assertEqual(2, len(a)) | |
1734 | |
1735 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1736 self.assertEqual(4, len(a)) | |
1737 | |
1738 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1739 self.assertEqual(8, len(a)) | |
1740 | |
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1741 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1742 'Expand' : True, |
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1743 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1744 self.assertEqual(1, len(a)) |
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1745 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1746 |
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1747 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1748 'Expand' : True, |
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1749 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1750 self.assertEqual(2, len(a)) |
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1751 for i in range(2): |
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1752 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1753 |
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1754 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1755 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1756 self.assertEqual(0, len(a)) |
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1757 |
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1758 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1759 'Expand' : True, |
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1760 'Query' : { 'StudyDate' : '-20061201' }}) |
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1761 self.assertEqual(1, len(a)) |
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1762 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1763 |
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1764 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1765 'Expand' : True, |
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1766 'Query' : { 'StudyDate' : '-20051201' }}) |
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1767 self.assertEqual(0, len(a)) |
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1768 |
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1769 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1770 'Expand' : True, |
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1771 'Query' : { 'StudyDate' : '20061201-' }}) |
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1772 self.assertEqual(2, len(a)) |
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1773 for i in range(2): |
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1774 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1775 |
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1776 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1777 'Expand' : True, |
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1778 'Query' : { 'StudyDate' : '20061202-' }}) |
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1779 self.assertEqual(1, len(a)) |
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1780 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1781 |
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1782 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1783 'Expand' : True, |
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1784 'Query' : { 'StudyDate' : '20080819-' }}) |
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1785 self.assertEqual(1, len(a)) |
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1786 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1787 |
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1788 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1789 'Expand' : True, |
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1790 'Query' : { 'StudyDate' : '20080820-' }}) |
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1791 self.assertEqual(0, len(a)) |
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1792 |
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1793 |
14 | 1794 |
1795 def test_rest_query_retrieve(self): | |
1796 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1797 | |
1798 # Upload 8 instances | |
1799 for i in range(2): | |
1800 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1801 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1802 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1803 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1804 | |
1805 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1806 for p in DoGet(_REMOTE, '/patients'): | |
1807 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1808 DoDelete(_REMOTE, '/patients/%s' % p) | |
1809 | |
1810 for q in DoGet(_REMOTE, '/queries'): | |
1811 DoDelete(_REMOTE, '/queries/%s' % q) | |
1812 | |
1813 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1814 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1815 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1816 'Query' : { |
1817 'PatientName' : '*NE*', | |
1818 'StudyDate' : '*', | |
1819 }})['ID'] | |
14 | 1820 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1821 | |
1822 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1823 self.assertTrue('answers' in b) | |
1824 self.assertTrue('level' in b) | |
1825 self.assertTrue('modality' in b) | |
1826 self.assertTrue('query' in b) | |
1827 self.assertTrue('retrieve' in b) | |
1828 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1829 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1830 | |
1831 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1832 self.assertEqual(2, len(q)) |
14 | 1833 self.assertTrue('PatientName' in q) |
27 | 1834 self.assertTrue('StudyDate' in q) |
14 | 1835 self.assertEqual('*NE*', q['PatientName']) |
27 | 1836 self.assertEqual('*', q['StudyDate']) |
14 | 1837 |
1838 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1839 | |
1840 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1841 self.assertTrue('content' in s) | |
1842 self.assertTrue('retrieve' in s) | |
1843 | |
1844 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1845 self.assertEqual('887', s['PatientID']) | |
1846 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1847 | |
1848 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1849 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1850 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1851 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1852 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1853 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1854 | |
112 | 1855 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1856 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1857 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1858 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1859 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1860 | |
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1861 # New in Orthanc 1.4.3 |
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1862 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1863 self.assertEqual(2, len(s)) |
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1864 for i in range(2): |
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1865 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1866 self.assertEqual('887', s[i]['PatientID']) |
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1867 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1868 |
14 | 1869 DoDelete(_REMOTE, '/queries/%s' % a) |
1870 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1871 | |
1872 | |
1873 def test_parent(self): | |
1874 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1875 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1876 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1877 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1878 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1879 self.assertEqual(instance, u) |
14 | 1880 |
1881 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1882 self.assertEqual('Patient', a['Type']) | |
1883 self.assertEqual(patient, a['ID']) | |
1884 | |
1885 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1886 self.assertEqual('Patient', a['Type']) | |
1887 self.assertEqual(patient, a['ID']) | |
1888 | |
1889 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1890 self.assertEqual('Study', a['Type']) | |
1891 self.assertEqual(study, a['ID']) | |
1892 | |
1893 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1894 self.assertEqual('Patient', a['Type']) | |
1895 self.assertEqual(patient, a['ID']) | |
1896 | |
1897 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1898 self.assertEqual('Study', a['Type']) | |
1899 self.assertEqual(study, a['ID']) | |
1900 | |
1901 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1902 self.assertEqual('Series', a['Type']) | |
1903 self.assertEqual(series, a['ID']) | |
1904 | |
1905 | |
1906 def test_shanon(self): | |
1907 def Anonymize(instance, replacements = {}): | |
119 | 1908 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1909 'Replace' : replacements, | |
1910 'Force' : True, | |
1911 }, 'application/json') | |
14 | 1912 |
1913 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1914 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1915 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1916 | |
1917 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1918 ids = [ 'ozp00SjY2xG', | |
1919 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1920 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1921 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1922 | |
1923 a = ExtractDicomTags(Anonymize(u), tags) | |
1924 for i in range(4): | |
1925 self.assertNotEqual(ids[i], a[i]) | |
1926 self.assertTrue(a[4].startswith('Orthanc')) | |
1927 | |
1928 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1929 for i in range(4): | |
1930 self.assertNotEqual(ids[i], a[i]) | |
1931 self.assertFalse(a[4].startswith('Orthanc')) | |
1932 | |
1933 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1934 self.assertEqual('instance', a[3]) | |
1935 self.assertFalse(a[4].startswith('Orthanc')) | |
1936 | |
1937 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1938 self.assertEqual('series', a[2]) | |
1939 self.assertFalse(a[4].startswith('Orthanc')) | |
1940 | |
1941 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1942 self.assertEqual('study', a[1]) | |
1943 self.assertFalse(a[4].startswith('Orthanc')) | |
1944 | |
1945 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1946 self.assertEqual('patient', a[0]) | |
1947 self.assertFalse(a[4].startswith('Orthanc')) | |
1948 | |
1949 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1950 'StudyInstanceUID' : 'study', | |
1951 'SeriesInstanceUID' : 'series', | |
1952 'SOPInstanceUID' : 'instance' }), tags) | |
1953 self.assertEqual('patient', a[0]) | |
1954 self.assertFalse(a[4].startswith('Orthanc')) | |
1955 | |
1956 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1957 | |
1958 | |
1959 def test_shanon_2(self): | |
1960 def Modify(instance, replacements = {}): | |
119 | 1961 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1962 'Replace' : replacements, | |
1963 'Force': True, | |
1964 }, 'application/json') | |
14 | 1965 |
1966 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1967 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1968 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1969 | |
1970 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1971 ids = [ 'ozp00SjY2xG', | |
1972 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1973 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1974 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1975 | |
1976 a = ExtractDicomTags(Modify(u), tags) | |
1977 self.assertEqual(ids[0], a[0]) | |
1978 self.assertEqual(ids[1], a[1]) | |
1979 self.assertEqual(ids[2], a[2]) | |
1980 self.assertNotEqual(ids[3], a[3]) | |
1981 self.assertEqual(0, len(a[4])) | |
1982 | |
1983 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1984 self.assertEqual(ids[0], a[0]) | |
1985 self.assertEqual(ids[1], a[1]) | |
1986 self.assertEqual(ids[2], a[2]) | |
1987 self.assertEqual('instance', a[3]) | |
1988 | |
1989 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1990 self.assertEqual(ids[0], a[0]) | |
1991 self.assertEqual(ids[1], a[1]) | |
1992 self.assertEqual('series', a[2]) | |
1993 self.assertNotEqual(ids[3], a[3]) | |
1994 | |
1995 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1996 self.assertEqual(ids[0], a[0]) | |
1997 self.assertEqual('study', a[1]) | |
1998 self.assertNotEqual(ids[2], a[2]) | |
1999 self.assertNotEqual(ids[3], a[3]) | |
2000 | |
2001 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
2002 self.assertEqual('patient', a[0]) | |
2003 self.assertNotEqual(ids[1], a[1]) | |
2004 self.assertNotEqual(ids[2], a[2]) | |
2005 self.assertNotEqual(ids[3], a[3]) | |
2006 | |
2007 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
2008 'StudyInstanceUID' : 'study', | |
2009 'SeriesInstanceUID' : 'series', | |
2010 'SOPInstanceUID' : 'instance' }), tags) | |
2011 self.assertEqual('patient', a[0]) | |
2012 self.assertEqual('study', a[1]) | |
2013 self.assertEqual('series', a[2]) | |
2014 self.assertEqual('instance', a[3]) | |
2015 | |
2016 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2017 | |
2018 | |
2019 def test_instances_tags(self): | |
2020 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
2021 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
2022 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
2023 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
2024 | |
2025 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
2026 self.assertEqual(2, len(i)) | |
2027 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2028 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2029 | |
2030 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
2031 self.assertEqual(2, len(i)) | |
2032 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2033 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
2034 | |
2035 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2036 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
2037 self.assertEqual(1, len(i)) | |
2038 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2039 | |
2040 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
2041 self.assertEqual(1, len(i)) | |
2042 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
2043 | |
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2044 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2045 self.assertEqual(1, len(i)) |
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2046 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2047 |
14 | 2048 |
2049 def test_lookup(self): | |
2050 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2051 self.assertEqual(0, len(a)) | |
2052 | |
2053 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
2054 | |
2055 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
2056 self.assertEqual(1, len(a)) | |
2057 self.assertEqual('Patient', a[0]['Type']) | |
2058 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
2059 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
2060 | |
2061 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
2062 self.assertEqual(1, len(a)) | |
2063 self.assertEqual('Study', a[0]['Type']) | |
2064 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
2065 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
2066 | |
2067 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
2068 self.assertEqual(1, len(a)) | |
2069 self.assertEqual('Series', a[0]['Type']) | |
2070 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
2071 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
2072 | |
2073 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
2074 self.assertEqual(1, len(a)) | |
2075 self.assertEqual('Instance', a[0]['Type']) | |
2076 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
2077 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
2078 | |
2079 DropOrthanc(_REMOTE) | |
2080 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
2081 self.assertEqual(0, len(a)) | |
2082 | |
15 | 2083 |
2084 def test_autorouting(self): | |
2085 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
2086 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
2087 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
2088 | |
2089 # Check that this version is >= 0.8.0 | |
2090 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
2091 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
2092 | |
2093 UploadInstance(_REMOTE, knee1) | |
2094 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2095 | |
2096 DropOrthanc(_REMOTE) | |
2097 DropOrthanc(_LOCAL) | |
174 | 2098 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
15 | 2099 UploadInstance(_REMOTE, knee1) |
2100 UploadInstance(_REMOTE, knee2) | |
2101 UploadInstance(_REMOTE, other) | |
2102 WaitEmpty(_REMOTE) | |
174 | 2103 UninstallLuaCallbacks(_REMOTE) |
15 | 2104 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
2105 | |
2106 DropOrthanc(_REMOTE) | |
2107 DropOrthanc(_LOCAL) | |
174 | 2108 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
15 | 2109 UploadInstance(_REMOTE, knee1) |
2110 UploadInstance(_REMOTE, knee2) | |
2111 UploadInstance(_REMOTE, other) | |
2112 WaitEmpty(_REMOTE) | |
174 | 2113 UninstallLuaCallbacks(_REMOTE) |
15 | 2114 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
2115 | |
2116 DropOrthanc(_REMOTE) | |
2117 DropOrthanc(_LOCAL) | |
174 | 2118 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
15 | 2119 UploadInstance(_REMOTE, knee1) |
2120 WaitEmpty(_REMOTE) | |
174 | 2121 UninstallLuaCallbacks(_REMOTE) |
15 | 2122 i = DoGet(_LOCAL, '/instances') |
2123 self.assertEqual(1, len(i)) | |
2124 | |
2125 with tempfile.NamedTemporaryFile(delete = True) as f: | |
2126 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
2127 f.flush() | |
45 | 2128 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 2129 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
2130 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
2131 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 2132 |
2133 | |
2134 def test_storescu_rf(self): | |
2135 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
2136 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
2137 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
2138 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 2139 |
2140 | |
2141 def test_anonymize_instance(self): | |
2142 def AnonymizeAndUpload(instanceId, parameters): | |
2143 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
2144 'application/json'), 'application/dicom')['ID'] | |
2145 | |
2146 def ModifyAndUpload(instanceId, parameters): | |
2147 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
2148 'application/json'), 'application/dicom')['ID'] | |
2149 | |
2150 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
2151 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
2152 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
2153 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
2154 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
2155 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2156 | |
2157 b = AnonymizeAndUpload(a, '{}') | |
2158 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2159 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2160 | |
2161 # Keep private tag (only OK since Orthanc 0.8.0) | |
2162 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
2163 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2164 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2165 | |
2166 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
2167 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2168 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2169 | |
2170 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
2171 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
2172 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
2173 | |
2174 # Examples from the Wiki | |
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2175 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 2176 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2177 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2178 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2179 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2180 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2181 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2182 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
2183 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2184 | |
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2185 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 2186 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2187 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2188 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2189 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
2190 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
2191 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2192 | |
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2193 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 2194 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
2195 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
2196 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
2197 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
2198 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
2199 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
2200 | |
2201 | |
2202 # Test modify non-existing | |
2203 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2204 json.dumps({ | |
2205 'PatientName' : 'Jodogne', | |
2206 'Modality' : 'CT', | |
2207 }))['ID'] | |
2208 | |
2209 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
2210 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
2211 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
2212 | |
2213 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
2214 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
2215 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
2216 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
2217 | |
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2218 |
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2219 def test_incoming_jpeg(self): |
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2220 def storescu(image, acceptUnknownSopClassUid): |
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2221 if acceptUnknownSopClassUid: |
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2222 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2223 else: |
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2224 tmp = [ '-xs' ] |
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2225 |
21
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2226 with open(os.devnull, 'w') as FNULL: |
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2227 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2228 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2229 GetDatabasePath(image) ], |
21
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2230 stderr = FNULL) |
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2231 |
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2232 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2233 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
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2234 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2235 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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2236 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
174 | 2237 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
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2238 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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2239 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2240 storescu('UnknownSopClassUid.dcm', True) |
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2241 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2242 |
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2243 |
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2244 def test_storescu_jpeg(self): |
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2245 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2246 |
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2247 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 2248 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
2249 | |
2250 # This is JPEG lossless | |
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2251 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
64 | 2252 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2253 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
64 | 2254 |
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2255 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2256 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2257 |
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2258 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2259 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2260 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2261 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2262 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2263 |
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2264 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2265 |
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2266 DropOrthanc(_REMOTE) |
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2267 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2268 |
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2269 |
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2270 def test_pixel_data(self): |
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2271 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2272 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2273 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2274 |
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2275 phenixSize = 358 * 512 * 2 |
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2276 colorSize = 1000 * 1000 * 3 |
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2277 jpegSize = 51918 |
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2278 |
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2279 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2280 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2281 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2282 |
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2283 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2284 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2285 |
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2286 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2287 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2288 |
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diff
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|
2289 |
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|
2290 def test_decode_brainix(self): |
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2291 brainix = [ |
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2292 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2293 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2294 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2295 ] |
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|
2296 h = '6fb11b932d535c2be04beabd99793ff8' |
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2297 maxValue = 426.0 |
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|
2298 |
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2299 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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|
2300 for i in brainix: |
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diff
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|
2301 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2302 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2303 |
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2304 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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|
2305 for i in brainix: |
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2306 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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2307 |
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2308 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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diff
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|
2309 for i in brainix: |
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2310 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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|
2311 |
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changeset
|
2312 for i in brainix: |
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2313 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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2314 |
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|
2315 |
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2316 def test_decode_color(self): |
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2317 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2318 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2319 |
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|
2320 for i in [ imagej, color ]: |
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|
2321 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2322 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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|
2323 |
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2324 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2325 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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|
2326 |
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2327 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2328 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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|
2329 |
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|
2330 |
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|
2331 def test_decode_rf(self): |
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2332 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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|
2333 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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|
2334 |
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|
2335 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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|
2336 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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|
2337 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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|
2338 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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|
2339 |
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|
2340 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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|
2341 |
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|
2342 |
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|
2343 def test_decode_multiframe(self): |
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2344 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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|
2345 |
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|
2346 # Test the first frame |
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2347 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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18
diff
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|
2348 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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|
2349 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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diff
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|
2350 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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|
2351 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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|
2352 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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diff
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|
2353 |
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changeset
|
2354 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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18
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|
2355 |
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|
2356 # Test the last frame |
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18
diff
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|
2357 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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18
diff
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|
2358 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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|
2359 |
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18
diff
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|
2360 |
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|
2361 def test_decode_signed(self): |
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18
diff
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|
2362 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
2a29bcff60a7
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18
diff
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|
2363 minValue = -2000 |
2a29bcff60a7
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18
diff
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|
2364 maxValue = 4042 |
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18
diff
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|
2365 |
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diff
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|
2366 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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18
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|
2367 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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|
2368 |
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|
2369 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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|
2370 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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|
2371 |
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|
2372 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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18
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|
2373 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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|
2374 |
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|
2375 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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diff
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|
2376 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2377 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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|
2378 |
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|
2379 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2380 |
2381 | |
46
85b2e36ed392
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45
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|
2382 def test_googlecode_issue_32(self): |
92
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2383 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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2384 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
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2385 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
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2386 |
22 | 2387 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2388 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2389 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2390 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2391 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2392 | |
92
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|
2393 # Replay the same test using Latin1 as default encoding: This must fail |
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2394 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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|
2395 |
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|
2396 DoDelete(_REMOTE, '/instances/%s' % f) |
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2397 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
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2398 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
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2399 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
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89
diff
changeset
|
2400 |
314 | 2401 # Back to UTF-8 |
2402 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
2403 | |
92
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test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2404 |
22 | 2405 def test_encodings(self): |
23 | 2406 # Latin-1 (ISO_IR 100) |
22 | 2407 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2408 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2409 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2410 |
2411 # Latin-2 (ISO_IR 101) | |
2412 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2413 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2414 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2415 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2416 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2417 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2418 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2419 def test_storescu_custom_aet(self): |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2420 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2421 # setting of the local AET during C-Store SCU (both in Lua and |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2422 # in the REST API)." |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2423 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2424 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2425 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2426 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2427 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2428 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2429 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2430 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2431 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2432 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2433 'Resources' : [ a['ID'], b['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2434 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2435 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2436 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2437 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2438 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2439 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2440 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2441 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2442 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2443 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2444 }) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2445 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2446 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2447 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2448 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2449 DropOrthanc(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2450 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2451 |
174 | 2452 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2453 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2454 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2455 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2456 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2457 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2458 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2459 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2460 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2461 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2462 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2463 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2464 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2465 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2466 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2467 def test_resources_since_limit(self): |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2468 # Upload 16 instances |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2469 for i in range(4): |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2470 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2471 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2472 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2473 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2474 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2475 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2476 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2477 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2478 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2479 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2480 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2481 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2482 |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2483 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2484 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2485 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2486 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2487 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2488 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2489 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2490 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2491 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2492 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2493 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2494 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2495 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2496 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2497 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2498 |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2499 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2500 s = {} |
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diff
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|
2501 since = 0 |
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diff
changeset
|
2502 while True: |
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diff
changeset
|
2503 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2504 if len(t) == 0: |
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diff
changeset
|
2505 break |
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diff
changeset
|
2506 |
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diff
changeset
|
2507 since += len(t) |
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diff
changeset
|
2508 for i in t: |
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diff
changeset
|
2509 s[i] = None |
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diff
changeset
|
2510 |
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diff
changeset
|
2511 self.assertEqual(16, len(s)) |
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2512 for instance in DoGet(_REMOTE, '/instances'): |
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2513 self.assertTrue(instance in s) |
36 | 2514 |
2515 | |
2516 def test_create_pdf(self): | |
2517 # Upload 4 instances | |
2518 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2519 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2520 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2521 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2522 | |
2523 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2524 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2525 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2526 | |
2527 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2528 pdf = f.read() | |
2529 | |
2530 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2531 json.dumps({ | |
2532 'Tags' : { | |
2533 'PatientName' : 'Jodogne', | |
2534 'Modality' : 'CT', | |
2535 }, | |
2536 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2537 })) | |
2538 | |
2539 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2540 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2541 | |
2542 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2543 self.assertEqual(len(b), len(pdf) + 1) | |
2544 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2545 | |
2546 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2547 json.dumps({ | |
2548 'Parent' : brainixPatient, | |
2549 'Tags' : { | |
2550 'PatientName' : 'Jodogne', | |
2551 } | |
2552 }))) | |
2553 | |
2554 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2555 json.dumps({ | |
2556 'Parent' : brainixPatient, | |
2557 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2558 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2559 })) | |
2560 | |
2561 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2562 | |
2563 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2564 json.dumps({ | |
2565 'Parent' : brainixStudy, | |
2566 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2567 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2568 })) | |
2569 | |
2570 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2571 | |
2572 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2573 json.dumps({ | |
2574 'Parent' : brainixEpi, | |
37 | 2575 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2576 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2577 })) | |
2578 | |
2579 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2580 | |
2581 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2582 self.assertEqual(len(b), len(pdf)) | |
2583 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2584 | |
2585 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2586 |
2587 | |
2588 def test_create_series(self): | |
2589 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2590 json.dumps({ | |
2591 'Tags' : { | |
40 | 2592 'SpecificCharacterSet' : 'ISO_IR 100', |
2593 'PatientName' : 'Sébastien Jodogne', | |
38 | 2594 'Modality' : 'CT', |
2595 }, | |
2596 'Content' : [ | |
40 | 2597 { |
2598 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2599 'Tags' : { 'ImageComments' : 'Tutu' } | |
2600 }, | |
38 | 2601 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2602 ] | |
2603 })) | |
2604 | |
2605 s = DoGet(_REMOTE, i['Path']) | |
2606 self.assertEqual('Series', s['Type']) | |
2607 self.assertEqual(s['ID'], i['ID']) | |
2608 self.assertEqual(2, len(s['Instances'])) | |
39 | 2609 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2610 self.assertEqual('Complete', s['Status']) | |
40 | 2611 |
2612 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2613 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2614 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2615 if 'ImageComments' in a: | |
2616 self.assertEqual('Tutu', a['ImageComments']) | |
2617 else: | |
2618 self.assertEqual('Tutu', b['ImageComments']) | |
2619 | |
2620 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2621 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2622 'Sébastien Jodogne') | |
47 | 2623 |
2624 | |
2625 def test_create_binary(self): | |
2626 binary = ''.join(map(chr, range(256))) | |
2627 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2628 tags = { | |
2629 'PatientName' : 'Jodogne', | |
2630 '8899-8899' : encoded | |
2631 } | |
2632 | |
2633 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2634 json.dumps({ | |
266 | 2635 'Tags' : tags, |
2636 'PrivateCreator' : 'TestBinary', | |
47 | 2637 })) |
2638 | |
2639 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2640 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2641 | |
2642 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2643 json.dumps({ | |
2644 'InterpretBinaryTags' : False, | |
266 | 2645 'Tags' : tags, |
2646 'PrivateCreator' : 'TestBinary', | |
47 | 2647 })) |
2648 | |
2649 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2650 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2651 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2652 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2653 def test_patient_ids_collision(self): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2654 # Upload 3 instances from 3 different studies, but with the |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2655 # same PatientID |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2656 for i in range(3): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2657 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2658 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2659 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2660 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2661 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2662 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2663 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2664 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2665 'CaseSensitive' : True, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2666 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2667 self.assertEqual(2, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2668 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2669 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2670 'CaseSensitive' : False, |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2671 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2672 self.assertEqual(1, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2673 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2674 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2675 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2676 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2677 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2678 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2679 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2680 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2681 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2682 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2683 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2684 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2685 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2686 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2687 self.assertEqual('COMMON', d[0]) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2688 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2689 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2690 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2691 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2692 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2693 |
e7f9b8199545
test_bitbucket_issue_4
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parents:
48
diff
changeset
|
2694 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2695 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2696 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2697 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2698 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2699 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2700 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2701 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2702 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2703 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2704 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2705 |
e7f9b8199545
test_bitbucket_issue_4
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parents:
48
diff
changeset
|
2706 p = DoGet(_REMOTE, '/patients') |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2707 self.assertEqual(2, len(p)) |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2708 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2709 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2710 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2711 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2712 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2713 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
2714 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2715 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
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parents:
49
diff
changeset
|
2716 |
8de63d56cf11
test_create_sequence
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49
diff
changeset
|
2717 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2718 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2719 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
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diff
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|
2720 json.dumps({ |
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diff
changeset
|
2721 'Tags' : { |
8de63d56cf11
test_create_sequence
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diff
changeset
|
2722 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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49
diff
changeset
|
2723 'PatientName': 'Jodogne^', |
51
264a20a0276d
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parents:
50
diff
changeset
|
2724 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
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parents:
49
diff
changeset
|
2725 } |
8de63d56cf11
test_create_sequence
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diff
changeset
|
2726 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2727 |
8de63d56cf11
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2728 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2729 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2730 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2731 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2732 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2733 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
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diff
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|
2734 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2735 |
264a20a0276d
test_modify_sequence
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parents:
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diff
changeset
|
2736 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2737 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2738 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2739 |
264a20a0276d
test_modify_sequence
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diff
changeset
|
2740 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2741 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2742 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2743 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
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parents:
50
diff
changeset
|
2744 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2745 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2746 }), |
264a20a0276d
test_modify_sequence
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parents:
50
diff
changeset
|
2747 'application/json') |
264a20a0276d
test_modify_sequence
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parents:
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diff
changeset
|
2748 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
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parents:
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diff
changeset
|
2749 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
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parents:
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diff
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|
2750 |
52 | 2751 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2752 | |
2753 | |
2754 def test_compression(self): | |
2755 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2756 | |
2757 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2758 | |
2759 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2760 # uncompress the data before running the test | |
2761 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2762 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2763 | |
2764 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2765 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2766 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2767 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2768 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2769 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2770 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2771 | |
2772 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2773 self.assertTrue('compress' in ops) | |
2774 self.assertTrue('uncompress' in ops) | |
2775 self.assertTrue('is-compressed' in ops) | |
2776 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2777 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2778 | |
2779 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2780 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2781 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2782 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2783 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2784 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2785 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2786 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2787 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2788 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2789 | |
2790 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2791 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2792 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2793 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2794 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2795 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2796 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2797 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2798 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2799 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2800 |
2801 | |
2802 def test_ordered_slices(self): | |
2803 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2804 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2805 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2806 self.assertEqual('Sequence', o['Type']) | |
2807 self.assertEqual(1, len(o['Dicom'])) | |
2808 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2809 self.assertEqual(76, len(o['Slices'])) | |
2810 for j in range(76): | |
2811 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2812 | |
68 | 2813 self.assertEqual(1, len(o['SlicesShort'])) |
2814 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2815 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2816 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2817 | |
53 | 2818 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2819 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2820 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2821 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2822 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2823 | |
2824 self.assertEqual('Volume', o['Type']) | |
2825 self.assertEqual(3, len(o['Dicom'])) | |
2826 self.assertEqual(3, len(o['Slices'])) | |
2827 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2828 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2829 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2830 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2831 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2832 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2833 | |
68 | 2834 self.assertEqual(3, len(o['SlicesShort'])) |
2835 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2836 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2837 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2838 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2839 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2840 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2841 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2842 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2843 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2844 | |
53 | 2845 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2846 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2847 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2848 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2849 | |
2850 self.assertEqual('Sequence', o['Type']) | |
2851 self.assertEqual(2, len(o['Dicom'])) | |
2852 self.assertEqual(2, len(o['Slices'])) | |
2853 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2854 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2855 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2856 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
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parents:
53
diff
changeset
|
2857 |
68 | 2858 self.assertEqual(2, len(o['SlicesShort'])) |
2859 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2860 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2861 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2862 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2863 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2864 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2865 | |
2866 | |
54
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diff
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|
2867 |
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53
diff
changeset
|
2868 def test_incoming_movescu_accession(self): |
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diff
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|
2869 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2870 |
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2871 # No matching patient, so no job is created |
54
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diff
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2872 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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diff
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|
2873 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
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diff
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|
2874 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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diff
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|
2875 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
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diff
changeset
|
2876 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
137
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2877 |
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changeset
|
2878 # 1 Matching patient, track the job |
138 | 2879 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
2880 '--study', | |
2881 '-k', '0008,0052=STUDY', | |
2882 '-k', 'AccessionNumber=A10003245599' | |
2883 ]))) | |
137
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2884 |
54
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diff
changeset
|
2885 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
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|
2886 |
55 | 2887 |
2888 def test_dicom_to_json(self): | |
2889 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
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2890 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
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2891 |
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diff
changeset
|
2892 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
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changeset
|
2893 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
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diff
changeset
|
2894 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2895 # Tags for compatibility with DCMTK 3.6.0 |
2896 'RETIRED_OtherPatientIDs', | |
2897 'OtherPatientIDs', | |
2898 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
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|
2899 ])) |
55 | 2900 |
2901 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2902 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
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diff
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|
2903 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
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|
2904 ])) |
55 | 2905 |
60
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2906 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
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|
2907 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
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2908 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
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|
2909 ])) |
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2910 |
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2911 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
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2912 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
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59
diff
changeset
|
2913 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2914 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2915 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2916 self.assertEqual(aa, tt) |
57 | 2917 |
2918 | |
2919 def test_batch_archive(self): | |
2920 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2921 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2922 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2923 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2924 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2925 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2926 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2927 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2928 | |
2929 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2930 z = zipfile.ZipFile(StringIO(s), "r") | |
2931 self.assertEqual(0, len(z.namelist())) | |
2932 | |
2933 # One patient | |
2934 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2935 z = zipfile.ZipFile(StringIO(s), "r") | |
2936 self.assertEqual(4, len(z.namelist())) | |
2937 | |
2938 # One patient + twice its study + one series from other patient | |
2939 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2940 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2941 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2942 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2943 ]) | |
2944 z = zipfile.ZipFile(StringIO(s), "r") | |
2945 self.assertEqual(6, len(z.namelist())) | |
2946 | |
2947 # One patient + one series + one instance | |
2948 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2949 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2950 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2951 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2952 ]) | |
2953 z = zipfile.ZipFile(StringIO(s), "r") | |
2954 self.assertEqual(7, len(z.namelist())) | |
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2955 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2956 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2957 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2958 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2959 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2960 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2961 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2962 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2963 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2964 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2965 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2966 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2967 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2968 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2969 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2970 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2971 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2972 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2973 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2974 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2975 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2976 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2977 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2978 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2979 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2980 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2981 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2982 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2983 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2984 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2985 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2986 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2987 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2988 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2989 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2990 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2991 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2992 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2993 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2994 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2995 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2996 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2997 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2998 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2999 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3000 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3001 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3002 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3003 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3004 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3005 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3006 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3007 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3008 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3009 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3010 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3011 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3012 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3013 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3014 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3015 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3016 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3017 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3018 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3019 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3020 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3021 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3022 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3023 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3024 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3025 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3026 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3027 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3028 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
3029 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3030 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3031 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3032 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3033 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3034 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3035 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3036 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3037 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3038 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3039 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3040 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3041 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3042 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3043 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3044 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
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3045 self.assertTrue('2 ' in s) |
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3046 |
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3047 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
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3048 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
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|
3049 self.assertEqual(1, len(s)) |
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3050 self.assertTrue('3 ' in s) |
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3051 |
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3052 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
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3053 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
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3054 self.assertEqual(1, len(s)) |
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3055 self.assertTrue('2 ' in s) |
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3056 |
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3057 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
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3058 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
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3059 self.assertEqual(1, len(s)) |
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diff
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|
3060 self.assertTrue('3 ' in s) |
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3061 |
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diff
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3062 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
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3063 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
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|
3064 self.assertEqual(2, len(s)) |
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diff
changeset
|
3065 self.assertTrue('1 ' in s) |
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diff
changeset
|
3066 self.assertTrue('2 ' in s) |
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|
3067 |
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|
3068 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
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diff
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3069 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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|
3070 self.assertEqual(1, len(s)) |
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3071 t = map(lambda x: x.strip(), s[0].split('\\')) |
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changeset
|
3072 self.assertTrue('PT' in t) |
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diff
changeset
|
3073 self.assertTrue('CT' in t) |
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diff
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3074 |
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diff
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|
3075 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
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3076 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
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changeset
|
3077 self.assertEqual(1, len(s)) |
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3078 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
71
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3079 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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3080 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
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3081 |
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diff
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|
3082 |
78
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test_decode_transfer_syntax
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parents:
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diff
changeset
|
3083 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
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diff
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3084 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
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diff
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|
3085 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
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diff
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3086 |
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3087 if t != '1.2.840.10008.1.2': # This file has no meta header |
74b7b9aed5f8
test TransferSyntax metadata
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parents:
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diff
changeset
|
3088 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
74b7b9aed5f8
test TransferSyntax metadata
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diff
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3089 self.assertEqual(t, transferSyntax) |
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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3090 |
78
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diff
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|
3091 if md5 == None: |
b89af51797ff
test_decode_transfer_syntax
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diff
changeset
|
3092 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
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diff
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|
3093 else: |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3094 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
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diff
changeset
|
3095 self.assertEqual(m, md5) |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
3096 |
b89af51797ff
test_decode_transfer_syntax
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diff
changeset
|
3097 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
3098 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
323 | 3099 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') # TODO - Doesn't work with GDCM 3.0.7 alone |
78
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3100 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
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|
3101 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3102 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
b89af51797ff
test_decode_transfer_syntax
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74
diff
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|
3103 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
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|
3104 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
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|
3105 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3106 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
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|
3107 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
3108 # JPEG2k image, not supported without GDCM plugin |
304 | 3109 if not HasGdcmPlugin(_REMOTE): |
299
c2144cf4bd83
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
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|
3110 Check('1.2.840.10008.1.2.4.90', None) |
c2144cf4bd83
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293
diff
changeset
|
3111 Check('1.2.840.10008.1.2.4.91', None) |
79 | 3112 |
3113 | |
3114 def test_raw_frame(self): | |
3115 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
3116 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3117 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3118 self.assertEqual(512 * 512 * 2, len(a)) | |
3119 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
3120 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
3121 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
3122 | |
3123 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
3124 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3125 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
3126 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
3127 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
3128 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3129 self.assertEqual("L", im.mode) | |
3130 self.assertEqual(512, im.size[0]) | |
3131 self.assertEqual(512, im.size[1]) | |
3132 | |
3133 # Test an image with 2 JPEG frames spread over multiple fragments | |
3134 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
3135 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
3136 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3137 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
3138 self.assertEqual(69214, len(a)) | |
3139 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
3140 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
3141 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
3142 self.assertEqual("RGB", im.mode) | |
3143 self.assertEqual(512, im.size[0]) | |
3144 self.assertEqual(512, im.size[1]) | |
323 | 3145 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) # TODO - Doesn't work with GDCM 3.0.7 alone |
79 | 3146 self.assertEqual("RGB", im.mode) |
3147 self.assertEqual(512, im.size[0]) | |
3148 self.assertEqual(512, im.size[1]) | |
81 | 3149 |
3150 | |
3151 | |
3152 def test_rest_movescu(self): | |
3153 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3154 | |
3155 # Upload 4 instances | |
3156 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
3157 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
3158 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
3159 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
3160 | |
3161 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3162 for p in DoGet(_REMOTE, '/patients'): | |
3163 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
3164 DoDelete(_REMOTE, '/patients/%s' % p) | |
3165 | |
3166 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3167 | |
3168 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
3169 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
3170 'Resources' : [ | |
3171 { | |
3172 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3173 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3174 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
3175 } | |
3176 ]}) | |
3177 | |
3178 # Upload series Brainix/Flair/* | |
3179 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3180 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3181 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3182 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
3183 | |
3184 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3185 'Resources' : [ | |
3186 { | |
3187 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3188 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
3189 } | |
3190 ]}) | |
3191 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3192 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3193 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
3194 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
3195 | |
3196 # Upload series Brainix/Epi/* | |
3197 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
3198 'Resources' : [ | |
3199 { | |
3200 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3201 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
3202 } | |
3203 ]}) | |
3204 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
3205 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
3206 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
3207 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
3208 | |
3209 # Upload study Knee/* | |
3210 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3211 'Resources' : [ | |
3212 { | |
3213 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3214 } | |
3215 ]}) | |
3216 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3217 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3218 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3219 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3220 | |
3221 # Reset | |
3222 for p in DoGet(_REMOTE, '/patients'): | |
3223 DoDelete(_REMOTE, '/patients/%s' % p) | |
3224 | |
3225 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
3226 | |
3227 | |
3228 # Upload all at once | |
3229 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
3230 'Resources' : [ | |
3231 { | |
3232 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
3233 }, | |
3234 { | |
3235 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
3236 } | |
3237 ]}) | |
3238 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
3239 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
3240 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
3241 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
3242 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
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83
diff
changeset
|
3243 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3244 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3245 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3246 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3247 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3248 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3249 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3250 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3251 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3253 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3254 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3255 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3256 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3257 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3258 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3259 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3260 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3261 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3262 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3263 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3264 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3265 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3266 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3267 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3268 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3269 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3270 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3271 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3272 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3273 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3274 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3275 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3276 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3277 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3278 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3279 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3280 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3281 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3282 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3283 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3284 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3285 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3286 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3287 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3288 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3289 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3290 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3291 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3292 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3293 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3294 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3295 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3296 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3297 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3298 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3299 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3300 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3301 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3302 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3303 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3304 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3305 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3306 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3346 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3347 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3348 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3349 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3350 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3351 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3352 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3353 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3354 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3355 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3356 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3357 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3358 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3359 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3360 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3361 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3362 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3363 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3364 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3365 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3366 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3367 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3368 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3369 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3370 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3371 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3372 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3373 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3374 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3375 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3376 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3377 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3378 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3379 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3380 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3381 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3382 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3383 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3384 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3385 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3386 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3387 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3388 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3389 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3390 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3391 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3392 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3393 |
314 | 3394 # Back to UTF-8 |
3395 self.assertEqual('Utf8', DoPut(_REMOTE, '/tools/default-encoding', 'Utf8')) | |
3396 | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3397 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3398 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3399 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3400 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3401 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3402 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3403 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3404 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3405 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3406 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3407 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3408 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3409 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3410 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3411 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3412 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3413 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3414 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3415 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3416 }, |
119 | 3417 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3418 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3419 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3420 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3421 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3422 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3423 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3424 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3425 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3426 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3427 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3428 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3429 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3430 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3431 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3432 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3433 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3434 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3435 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3436 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3437 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3438 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3439 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3440 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3441 |
104 | 3442 def test_httpClient_lua(self): |
3443 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3444 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3445 | |
3446 self.assertIn('OK', result) | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3447 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3448 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3449 def test_bitbucket_issue_44(self): |
319 | 3450 # https://bugs.orthanc-server.com/show_bug.cgi?id=44 |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3451 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3452 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3453 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3454 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3455 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3456 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3457 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3458 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3459 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3460 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3461 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3462 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3463 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3464 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3465 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3466 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3467 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3468 self.assertEqual(2010, im.size[0]) |
fddb35f7289d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3469 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3470 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3471 # This is the chest image, with MONOCHROME1. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3472 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3473 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3474 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3475 self.assertGreater(10, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3476 else: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3477 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3478 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3479 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3480 self.assertEqual("L", im.mode) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3481 self.assertEqual(1572, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3482 self.assertEqual(2010, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3483 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3484 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3485 # white (255), should be rendered as white (255) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3486 self.assertEqual(255, im.getpixel((0,0))) |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3487 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3488 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3489 def test_bitbucket_issue_42(self): |
319 | 3490 # https://bugs.orthanc-server.com/show_bug.cgi?id=42 |
123 | 3491 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3492 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3493 modified = DoPost(_REMOTE, |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3494 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3495 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3496 'application/json') |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3497 self.assertTrue('PatientID' in modified) |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3498 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3499 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3500 def test_rest_find_limit(self): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3501 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
319 | 3502 # Related to issue 53: https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3503 |
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3504 # Upload 6 instances |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3505 brainix = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3506 knee = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3507 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3508 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3509 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3510 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3511 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3512 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3515 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3517 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3518 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3519 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3520 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3521 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3522 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3523 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3524 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3525 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3526 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3527 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3528 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3529 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3530 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3531 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3532 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3533 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3534 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3535 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3536 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3537 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3538 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3539 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3540 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3541 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3542 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3543 # Check whether the two sets are equal through symmetric difference |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3544 self.assertEqual(0, len(set(b) ^ set(brainix))) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3545 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3546 # Check using KNEE |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3547 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3548 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3549 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3550 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3551 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3552 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3553 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3554 'Limit' : 2 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3555 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3556 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3557 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3558 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3559 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3560 'Query' : { 'PatientName' : 'K*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3561 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3562 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3563 self.assertEqual(1, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3564 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3565 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3566 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3567 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3568 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3569 def test_bitbucket_issue_46(self): |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3570 # "PHI remaining after anonymization" |
319 | 3571 # https://bugs.orthanc-server.com/show_bug.cgi?id=46 |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3572 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3573 def GetAnonymizedTags(study, version): |
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3574 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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diff
changeset
|
3575 { 'DicomVersion' : version }, |
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diff
changeset
|
3576 'application/json') ['ID'] |
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113
diff
changeset
|
3577 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3578 self.assertEqual(1, len(a)) |
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3579 |
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3580 instance = a[0]['ID'] |
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3581 |
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3582 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
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3583 |
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3584 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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3585 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
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3586 |
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3587 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
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3588 # (Patient's Mother's Birth Name) tags |
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3589 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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3590 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
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3591 'application/json')['ID'] |
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|
3592 |
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3593 # Use Table E.1-1 from PS 3.15-2008 |
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3594 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3595 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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3596 self.assertTrue('0032,1033' in tags) |
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3597 self.assertTrue('0010,1060' in tags) |
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|
3598 |
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3599 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
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3600 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3601 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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3602 self.assertFalse('0032,1033' in tags) |
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3603 self.assertFalse('0010,1060' in tags) |
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3604 |
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3605 t = {} |
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3606 for (key, value) in tags.iteritems(): |
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3607 t[value['Name']] = value['Value'] |
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|
3608 |
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3609 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
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3610 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
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3611 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
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3612 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
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3613 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
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|
3614 |
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3615 with tempfile.NamedTemporaryFile(delete = True) as f: |
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3616 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
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3617 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
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3618 f.flush() |
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3619 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
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|
3620 stderr = subprocess.STDOUT).split('\n') |
118
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|
3621 |
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diff
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|
3622 |
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3623 def test_bitbucket_issue_55(self): |
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3624 def Run(modify, query): |
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3625 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3626 |
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|
3627 operation = 'modify' if modify else 'anonymize' |
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|
3628 |
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|
3629 self.assertRaises(Exception, lambda: DoPost( |
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3630 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
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3631 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3632 |
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|
3633 query["Force"] = True |
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3634 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
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3635 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
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3636 DoDelete(_REMOTE, a) |
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|
3637 |
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3638 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3639 |
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3640 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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3641 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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|
3642 |
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3643 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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3644 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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|
3645 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3646 |
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|
3647 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
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|
3648 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
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|
3649 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
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|
3650 |
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|
3651 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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|
3652 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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|
3653 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3654 |
120
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diff
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|
3655 |
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|
3656 def test_bitbucket_issue_56(self): |
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|
3657 # Case-insensitive matching over accents. This test assumes |
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|
3658 # that the "CaseSensitivePN" configuration option of Orthanc |
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diff
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|
3659 # is set to "false" (default value). |
319 | 3660 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
120
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|
3661 |
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|
3662 def Check(name, expected, expectedSensitive): |
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|
3663 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
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|
3664 '-k', '0008,0052=PATIENT', |
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|
3665 '-k', 'PatientName=%s' % name ]) |
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|
3666 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
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|
3667 self.assertEqual(expected, len(patientNames)) |
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|
3668 |
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diff
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|
3669 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3670 'CaseSensitive' : False, |
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|
3671 'Query' : { 'PatientName' : name }}) |
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|
3672 self.assertEqual(expected, len(a)) |
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|
3673 |
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diff
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|
3674 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3675 'CaseSensitive' : True, |
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|
3676 'Query' : { 'PatientName' : name }}) |
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|
3677 self.assertEqual(expectedSensitive, len(a)) |
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|
3678 |
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|
3679 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
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diff
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|
3680 |
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|
3681 # WildcardConstraint |
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diff
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|
3682 Check('TeSt*', 1, 0) |
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|
3683 Check('TeSt-a*', 0, 0) |
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diff
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|
3684 Check('TeSt-É*', 1, 0) |
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diff
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|
3685 Check('TeSt-é*', 1, 0) |
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diff
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|
3686 Check('Test-é*', 1, 1) |
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diff
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|
3687 |
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|
3688 # ListConstraint |
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diff
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|
3689 Check('Test-éüäöò\\nope', 1, 1) |
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diff
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|
3690 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
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diff
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|
3691 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3692 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3693 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3694 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3695 |
125 | 3696 |
3697 def test_gbk_alias(self): | |
3698 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3699 # This test fails on Orthanc <= 1.3.0 | |
3700 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3701 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3702 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3703 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3704 |
3705 | |
3706 def test_long_tag(self): | |
3707 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3708 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3709 | |
3710 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3711 self.assertTrue('0018,1020' in tags) | |
3712 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3713 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3714 self.assertEqual(None, tags['0018,1020']['Value']) | |
3715 | |
3716 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3717 self.assertTrue('0018,1020' in tags) | |
3718 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3719 self.assertEqual('String', tags['0018,1020']['Type']) | |
3720 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3721 | |
3722 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3723 self.assertTrue('SoftwareVersions' in tags) | |
3724 self.assertEqual(None, tags['SoftwareVersions']) | |
3725 self.assertTrue('HeartRate' in tags) | |
3726 self.assertEqual(474, int(tags['HeartRate'])) | |
3727 | |
3728 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3729 self.assertTrue('SoftwareVersions' in tags) | |
3730 self.assertEqual(None, tags['SoftwareVersions']) | |
3731 | |
3732 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3733 self.assertTrue('SoftwareVersions' in tags) | |
3734 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3735 | |
3736 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3737 self.assertTrue('SoftwareVersions' in tags) | |
3738 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3739 | |
3740 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3741 self.assertEqual(1, len(tags)) | |
3742 self.assertTrue(i in tags.keys()) | |
3743 self.assertTrue('0018,1020' in tags[i]) | |
3744 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3745 | |
3746 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3747 self.assertEqual(1, len(tags)) | |
3748 self.assertTrue(i in tags.keys()) | |
3749 self.assertTrue('0018,1020' in tags[i]) | |
3750 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3751 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3752 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3753 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3754 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3755 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3756 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3757 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3758 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3759 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3760 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3761 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3762 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3763 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3764 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3765 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3766 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3767 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3768 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3769 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3770 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3771 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3772 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3773 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3774 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3775 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3776 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3777 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3778 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3779 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3780 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3781 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3782 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3783 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3784 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3785 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3786 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3787 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3788 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3789 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3790 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3791 |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 def test_anonymize_relationships_1(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3793 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3794 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3796 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3797 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3805 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3806 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3807 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3808 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3809 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3810 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3811 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3812 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3813 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3814 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3815 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3816 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3817 DoGet(_REMOTE, FRAME % a2)) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3819 DoGet(_REMOTE, FRAME % b2)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3820 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3821 DoGet(_REMOTE, FRAME % b1)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3822 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3823 DoGet(_REMOTE, FRAME % b2)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3824 |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3825 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3828 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
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Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3829 |
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Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3830 for i in range(3): |
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parents:
130
diff
changeset
|
3831 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
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130
diff
changeset
|
3832 DoGet(_REMOTE, SOP % (a2, i))) |
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parents:
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diff
changeset
|
3833 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
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130
diff
changeset
|
3834 DoGet(_REMOTE, SOP % (b2, i))) |
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parents:
130
diff
changeset
|
3835 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
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parents:
130
diff
changeset
|
3836 DoGet(_REMOTE, SOP % (b1, i))) |
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parents:
130
diff
changeset
|
3837 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3838 DoGet(_REMOTE, SOP % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
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parents:
130
diff
changeset
|
3839 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3840 DoGet(_REMOTE, CLASS % (b1, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3841 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3842 DoGet(_REMOTE, CLASS % (b2, i))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3843 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3844 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3845 def test_anonymize_relationships_2(self): |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3846 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3847 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3848 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3849 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3850 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3851 '{}', |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3852 'application/json')['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3853 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3854 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3855 self.assertEqual(2, len(a)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3856 a1 = a[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3857 a2 = a[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3858 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3859 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3860 self.assertEqual(2, len(b)) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3861 b1 = b[0]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3862 b2 = b[1]['ID'] |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3863 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3864 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3865 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3866 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3867 |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3868 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3869 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3870 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3871 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3872 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3873 DoGet(_REMOTE, SOP % (a2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3874 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3875 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3876 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3877 DoGet(_REMOTE, SOP % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3878 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3879 DoGet(_REMOTE, SOP % (b2, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3880 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3881 DoGet(_REMOTE, CLASS % (b1, 0))) |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3882 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3883 DoGet(_REMOTE, CLASS % (b2, 0))) |
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3884 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3885 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3886 def test_anonymize_relationships_3(self): |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3887 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3888 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3889 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3890 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3891 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3892 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3895 self.assertEqual(2, len(a)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3896 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3897 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3898 sr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3899 mr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3900 else: |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3901 sr2 = a[1]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3902 mr2 = a[0]['ID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3903 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3904 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3905 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3906 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3907 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3908 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3909 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3910 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3911 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3912 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3913 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3914 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3915 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3916 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3917 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3918 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3919 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3920 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3921 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3922 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3923 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3924 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3925 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3926 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3927 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3928 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3929 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3930 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3931 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3932 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3933 |
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3934 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
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3935 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
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3936 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
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3937 |
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3938 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
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3939 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
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3940 self.assertEqual(str(content1), str(content2)) |
141
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3941 |
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test_bitbucket_issue_94
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3942 |
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test_bitbucket_issue_94
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3943 def test_bitbucket_issue_94(self): |
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3944 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
319 | 3945 # https://bugs.orthanc-server.com/show_bug.cgi?id=94 |
141
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3946 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
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3947 |
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3948 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
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3949 |
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3950 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
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3951 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
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3952 |
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3953 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
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3954 |
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3955 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
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3956 self.assertEqual(1, len(a)) |
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3957 |
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3958 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
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3959 self.assertEqual(1, len(b)) |
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3960 |
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3961 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
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3962 self.assertEqual(1, len(c)) |
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3963 |
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3964 self.assertEqual(a, b) # Modified DICOM |
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3965 self.assertNotEqual(a, c) # Anonymized DICOM |
143
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3966 |
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3967 |
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3968 def test_metadata_origin(self): |
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3969 # Upload using the REST API |
144
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3970 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
143
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3971 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3972 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3973 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3974 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
315 | 3975 |
3976 # "HttpUsername" is empty iff "AuthenticationEnabled" is "false" | |
3977 self.assertTrue(DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i) in [ '', 'alice' ]) | |
3978 | |
144
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3979 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3980 self.assertEqual('RestApi', m['Origin']) |
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3981 self.assertEqual('', m['RemoteAET']) |
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3982 self.assertNotEqual('', m['RemoteIP']) |
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3983 self.assertFalse('CalledAET' in m) |
315 | 3984 self.assertTrue('HttpUsername' in m) |
3985 self.assertTrue(m['HttpUsername'] in [ '', 'alice' ]) | |
144
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3986 |
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3987 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3988 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3989 self.assertEqual('1', m['IndexInSeries']) |
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3990 self.assertTrue('ReceptionDate' in m) |
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|
3991 |
143
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test_metadata_origin
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3992 DoDelete(_REMOTE, '/instances/%s' % i) |
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3993 |
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3994 # Upload using the DICOM protocol |
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3995 subprocess.check_call([ FindExecutable('storescu'), |
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|
3996 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
144
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diff
changeset
|
3997 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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testing metadata?expand
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|
3998 '-xw' ]) # Propose JPEG2000 |
143
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3999 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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4000 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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4001 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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test_metadata_origin
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4002 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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test_metadata_origin
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4003 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
144
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4004 |
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changeset
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4005 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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changeset
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4006 self.assertEqual('DicomProtocol', m['Origin']) |
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changeset
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4007 self.assertEqual('STORESCU', m['RemoteAET']) |
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changeset
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4008 self.assertNotEqual('', m['RemoteIP']) |
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changeset
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4009 self.assertEqual('ANY-SCP', m['CalledAET']) |
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changeset
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4010 self.assertFalse('HttpUsername' in m) |
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diff
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4011 |
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|
4012 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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4013 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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changeset
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4014 self.assertEqual('1', m['IndexInSeries']) |
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diff
changeset
|
4015 self.assertTrue('ReceptionDate' in m) |
147 | 4016 |
4017 | |
4018 def test_lua_deadlock(self): | |
4019 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
4020 # is with the lua script I'm using for conversion of images to | |
4021 # JPEG2000. When the script is used with 1.4.0 the first | |
4022 # instance appears to be stored and then everything just | |
4023 # halts, ie Orthanc wont respond to anything after that." | |
4024 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
174 | 4025 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
147 | 4026 |
4027 subprocess.check_call([ FindExecutable('storescu'), | |
4028 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
4029 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
4030 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
4031 ]) | |
4032 | |
4033 instances = DoGet(_REMOTE, '/instances') | |
4034 self.assertEqual(2, len(instances)) | |
4035 | |
4036 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
4037 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
175 | 4038 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
147 | 4039 self.assertEqual(t1, t2); |
154
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diff
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|
4040 |
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test_find_group_length
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diff
changeset
|
4041 |
4a533d003080
test_find_group_length
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diff
changeset
|
4042 def test_find_group_length(self): |
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diff
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4043 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
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4044 # one of the Generic Group Length tags (*, 0x0000) |
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4045 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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4046 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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4047 self.assertFalse('UnableToProcess' in result) |
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4048 self.assertFalse('E:' in result) |
179
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4049 |
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4050 |
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4051 def test_split(self): |
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4052 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4053 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
254
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diff
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|
4054 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4055 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
179
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4056 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4057 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4058 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4059 |
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4060 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4061 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4062 |
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|
4063 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4064 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4065 |
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4066 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4067 (_REMOTE, '/studies/%s/split' % study, { |
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4068 'Series' : [ t2 ], |
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4069 'Replace' : { 'PatientName' : 'Hello' }, |
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4070 'Remove' : [ 'ReferringPhysicianName' ], |
181 | 4071 'KeepSource' : False, |
4072 'Asynchronous' : True | |
179
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4073 })) |
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4074 |
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4075 self.assertNotEqual(None, job) |
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4076 |
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4077 studies = set(DoGet(_REMOTE, '/studies')) |
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4078 self.assertEqual(2, len(studies)) |
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4079 |
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4080 series = set(DoGet(_REMOTE, '/series')) |
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4081 self.assertEqual(2, len(series)) |
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4082 self.assertTrue(t1 in series) |
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4083 |
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4084 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4085 self.assertTrue(study in studies) |
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4086 self.assertTrue(study2 in studies) |
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|
4087 |
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4088 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4089 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4090 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4091 |
254
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4092 sopInstanceUids = set() |
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4093 for i in DoGet(_REMOTE, '/instances?expand'): |
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4094 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4095 |
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4096 self.assertTrue(knee1Sop in sopInstanceUids) |
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4097 |
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4098 # Fails if Orthanc <= 1.5.7 |
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4099 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4100 |
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4101 # One original instance is kept, another one is added because of the split |
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4102 self.assertEqual(2, len(sopInstanceUids)) |
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4103 |
179
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4104 |
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4105 def test_merge(self): |
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4106 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
254
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4107 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4108 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4109 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
179
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4110 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4111 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4112 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4113 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4114 |
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4115 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4116 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4117 |
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4118 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4119 (_REMOTE, '/studies/%s/merge' % knee, { |
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4120 'Resources' : [ brainix ], |
181 | 4121 'KeepSource' : True, |
4122 'Synchronous' : False | |
179
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4123 })) |
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4124 |
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4125 self.assertNotEqual(None, job) |
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|
4126 |
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4127 studies = set(DoGet(_REMOTE, '/studies')) |
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4128 self.assertEqual(2, len(studies)) |
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4129 self.assertTrue(knee in studies) |
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4130 self.assertTrue(brainix in studies) |
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|
4131 |
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4132 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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|
4133 self.assertTrue(t1 in series) |
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4134 series.remove(t1) |
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4135 self.assertEqual(1, len(series)) |
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|
4136 |
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4137 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4138 self.assertEqual(1, len(instances)) |
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4139 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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|
4140 |
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|
4141 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4142 self.assertEqual(1, len(instances)) |
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4143 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4144 |
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4145 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4146 self.assertEqual(1, len(instances)) |
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4147 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4148 |
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4149 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4150 |
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4151 for key in tags['PatientMainDicomTags']: |
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4152 self.assertEqual(a[key], merged[key]) |
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4153 if (key in b and key != 'PatientSex'): |
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4154 self.assertNotEqual(a[key], b[key]) |
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4155 |
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4156 for key in tags['MainDicomTags']: |
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4157 # Not in the patient/study module |
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4158 if (not key in [ 'InstitutionName', |
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4159 'RequestingPhysician', |
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4160 'RequestedProcedureDescription', ]): |
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4161 self.assertEqual(a[key], merged[key]) |
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4162 if (key in b): |
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4163 self.assertNotEqual(a[key], b[key]) |
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4164 |
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4165 sopInstanceUids = set() |
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4166 for i in DoGet(_REMOTE, '/instances?expand'): |
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4167 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4168 |
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4169 self.assertTrue(kneeSop in sopInstanceUids) |
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4170 self.assertTrue(brainixSop in sopInstanceUids) |
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4171 |
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4172 # Fails if Orthanc <= 1.5.7 |
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4173 # The 2 original instances are kept, another one is added because of the merge |
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4174 self.assertEqual(3, len(sopInstanceUids)) |
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4175 |
187 | 4176 |
4177 def test_async_archive(self): | |
4178 # Testing the asynchronous generation of archives/medias (new | |
4179 # in Orthanc 1.4.3) | |
4180 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
4181 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
4182 | |
4183 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
4184 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
4185 | |
4186 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4187 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
4188 'Synchronous' : False | |
4189 })) | |
4190 | |
4191 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4192 self.assertEqual(1, len(z.namelist())) | |
4193 self.assertFalse('DICOMDIR' in z.namelist()) | |
4194 | |
4195 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
4196 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
4197 'Synchronous' : False | |
4198 })) | |
4199 | |
4200 # The archive from the first job has been replaced by the | |
4201 # archive from second job (as MediaArchiveSize == 1) | |
4202 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
4203 | |
4204 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
4205 self.assertEqual(2, len(z.namelist())) | |
4206 self.assertTrue('DICOMDIR' in z.namelist()) | |
4207 | |
4208 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4209 (_REMOTE, '/tools/create-archive', { | |
4210 'Synchronous' : False, | |
4211 'Resources' : [ kneeT1, kneeT2 ], | |
4212 })) | |
4213 | |
4214 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4215 self.assertEqual(2, len(z.namelist())) | |
4216 self.assertFalse('DICOMDIR' in z.namelist()) | |
4217 | |
4218 job = MonitorJob2(_REMOTE, lambda: DoPost | |
4219 (_REMOTE, '/tools/create-media', { | |
4220 'Synchronous' : False, | |
4221 'Resources' : [ kneeT1, kneeT2 ], | |
4222 })) | |
4223 | |
4224 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
4225 self.assertEqual(3, len(z.namelist())) | |
4226 self.assertTrue('DICOMDIR' in z.namelist()) | |
188
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4227 |
187 | 4228 |
188
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4229 def test_queries_hierarchy(self): |
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4230 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
189
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4231 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
188
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4232 |
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4233 tags = { |
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4234 'NumberOfPatientRelatedInstances' : '', |
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4235 'NumberOfPatientRelatedSeries' : '', |
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4236 'NumberOfPatientRelatedStudies' : '', |
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4237 'NumberOfStudyRelatedInstances' : '', |
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4238 'NumberOfStudyRelatedSeries' : '', |
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4239 'NumberOfSeriesRelatedInstances' : '', |
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4240 } |
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4241 |
189
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4242 tags2 = copy.copy(tags) |
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4243 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4244 |
188
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4245 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4246 'Level' : 'Patient', |
189
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4247 'Query' : tags2 |
188
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4248 }) ['ID'] |
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4249 |
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4250 study = DoPost(_REMOTE, '/modalities/self/query', { |
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4251 'Level' : 'Study', |
189
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4252 'Query' : tags2 |
188
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4253 }) ['ID'] |
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4254 |
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4255 series = DoPost(_REMOTE, '/modalities/self/query', { |
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4256 'Level' : 'Series', |
189
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4257 'Query' : tags2 |
188
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4258 }) ['ID'] |
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4259 |
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4260 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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4261 'Level' : 'Instance', |
189
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4262 'Query' : tags2 |
188
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4263 }) ['ID'] |
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4264 |
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4265 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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4266 self.assertEqual(1, len(p)) |
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4267 self.assertEqual('887', p[0]['PatientID']) |
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4268 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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4269 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4270 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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4271 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4272 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4273 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4274 |
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4275 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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4276 self.assertEqual(1, len(p)) |
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4277 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4278 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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4279 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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4280 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4281 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4282 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4283 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4284 |
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4285 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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4286 self.assertEqual(1, len(p)) |
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4287 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
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4288 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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4289 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4290 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4291 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4292 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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4293 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4294 |
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4295 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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4296 self.assertEqual(1, len(p)) |
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4297 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
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4298 |
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4299 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
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4300 { 'Query' : tags }) ['ID'] |
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4301 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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4302 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
189
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4303 |
188
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4304 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
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4305 { 'Query' : tags }) ['ID'] |
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4306 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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4307 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
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4308 |
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4309 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
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4310 { 'Query' : tags }) ['ID'] |
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4311 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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4312 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
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4313 |
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4314 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
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4315 { 'Query' : tags }) ['ID'] |
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4316 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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4317 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
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4318 |
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4319 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
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4320 { 'Query' : tags }) ['ID'] |
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4321 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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new test: test_queries_hierarchy
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diff
changeset
|
4322 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4323 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4324 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4325 { 'Query' : tags }) ['ID'] |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4326 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4327 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4328 |
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4329 |
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
4330 def test_dicom_disk_size(self): |
11719f19bd62
test_dicom_disk_size
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parents:
188
diff
changeset
|
4331 dicomSize = 0 |
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4332 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4333 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
11719f19bd62
test_dicom_disk_size
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parents:
188
diff
changeset
|
4334 |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4335 for i in range(2): |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4336 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4337 UploadInstance(_REMOTE, p) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4338 dicomSize += os.path.getsize(GetDatabasePath(p)) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4339 |
11719f19bd62
test_dicom_disk_size
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parents:
188
diff
changeset
|
4340 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4341 self.assertEqual(2, s['CountInstances']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4342 self.assertEqual(2, s['CountSeries']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4343 self.assertEqual(1, s['CountStudies']) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4344 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4345 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4346 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4347 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
11719f19bd62
test_dicom_disk_size
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parents:
188
diff
changeset
|
4348 |
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4349 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4350 def test_changes_2(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4351 # More consistent behavior since Orthanc 1.5.2 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4352 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4353 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4354 # Make sure that this is not the first change |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4355 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4356 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4357 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4358 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4359 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4360 # No more instance, but there were previous changes |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4361 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4362 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4363 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4364 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4365 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4366 seq = c['Last'] |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4367 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4368 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4369 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4370 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4371 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4372 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4373 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4374 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4375 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4376 self.assertEqual(seq, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4377 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4378 # Add one instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4379 UploadInstance(_REMOTE, 'DummyCT.dcm') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4380 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4381 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4382 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4383 self.assertEqual(4, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4384 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4385 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4386 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4387 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4388 self.assertEqual(1, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4389 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4390 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4391 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4392 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4393 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4394 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4395 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4396 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4397 # Remove the uploaded instance |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4398 DoDelete(_REMOTE, '/instances/%s' % a) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4399 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4400 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4401 c = DoGet(_REMOTE, '/changes') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4402 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4403 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4404 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4405 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4406 c = DoGet(_REMOTE, '/changes?last') |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4407 self.assertEqual(0, len(c['Changes'])) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4408 self.assertTrue(c['Done']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4409 self.assertEqual(seq + 4, c['Last']) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4410 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4411 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4412 self.assertEqual(0, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4413 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4414 self.assertEqual(seq + 4, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4415 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4416 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4417 def test_bitbucket_issue_124(self): |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4418 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4419 |
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4420 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
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test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4421 self.assertEqual(2, len(z.namelist())) |
207
a515eec74078
test_invalid_findscp
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diff
changeset
|
4422 |
a515eec74078
test_invalid_findscp
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202
diff
changeset
|
4423 |
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4424 def test_invalid_findscp(self): |
a515eec74078
test_invalid_findscp
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4425 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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4426 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
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4427 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
208
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4428 |
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|
4429 |
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|
4430 def test_bitbucket_issue_90(self): |
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4431 def CountDicomResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
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4432 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
2444c9a7c422
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diff
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4433 return len(re.findall('\(0010,0040\)', a)) |
2444c9a7c422
test_bitbucket_issue_90
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4434 |
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test_bitbucket_issue_90
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|
4435 def CountRestResults(sex): |
2444c9a7c422
test_bitbucket_issue_90
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diff
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4436 a = DoPost(_REMOTE, '/tools/find', |
2444c9a7c422
test_bitbucket_issue_90
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parents:
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diff
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4437 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
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parents:
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diff
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4438 return len(a) |
2444c9a7c422
test_bitbucket_issue_90
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diff
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|
4439 |
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test_bitbucket_issue_90
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diff
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|
4440 # Just like the "CR000000.dcm" of the issue, the test image |
2444c9a7c422
test_bitbucket_issue_90
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parents:
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diff
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4441 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
2444c9a7c422
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diff
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4442 UploadInstance(_REMOTE, 'DummyCT.dcm') |
2444c9a7c422
test_bitbucket_issue_90
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diff
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|
4443 |
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test_bitbucket_issue_90
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4444 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
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4445 |
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diff
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4446 # In wildcard constraints, the patient sex must be set for a match to occur |
2444c9a7c422
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4447 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
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4448 self.assertEqual(0, CountRestResults('*')) |
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4449 |
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4450 # In single-valued constraints, the patient sex must be set |
2444c9a7c422
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diff
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4451 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
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4452 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
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diff
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4453 self.assertEqual(0, CountRestResults('F')) |
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4454 self.assertEqual(0, CountRestResults('M')) |
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diff
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|
4455 |
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parents:
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|
4456 # Empty constraints are only used to ask the actual value of |
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diff
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4457 # the tag to be added to the *answer*. The tag should not used |
2444c9a7c422
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parents:
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diff
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4458 # as a filter in such a situation. |
2444c9a7c422
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parents:
207
diff
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|
4459 self.assertEqual(1, CountDicomResults('PatientSex')) |
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parents:
207
diff
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4460 self.assertEqual(1, CountDicomResults('PatientSex=')) |
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test_bitbucket_issue_90
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parents:
207
diff
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4461 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
210
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208
diff
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4462 |
2c50c8f340c2
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diff
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|
4463 |
2c50c8f340c2
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diff
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|
4464 def test_rest_modalities_in_study(self): |
2c50c8f340c2
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diff
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4465 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4466 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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diff
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|
4467 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
2c50c8f340c2
test_rest_modalities_in_study
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|
4468 |
2c50c8f340c2
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diff
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|
4469 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
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diff
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|
4470 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
2c50c8f340c2
test_rest_modalities_in_study
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diff
changeset
|
4471 self.assertEqual(0, len(a)) |
2c50c8f340c2
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diff
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|
4472 |
2c50c8f340c2
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changeset
|
4473 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
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208
diff
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|
4474 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
2c50c8f340c2
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|
4475 self.assertEqual(1, len(a)) |
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|
4476 |
2c50c8f340c2
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parents:
208
diff
changeset
|
4477 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
2c50c8f340c2
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parents:
208
diff
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|
4478 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
2c50c8f340c2
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diff
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|
4479 self.assertEqual(1, len(a)) |
211 | 4480 |
4481 | |
4482 def test_series_status(self): | |
4483 def HasCompletedInChanges(): | |
4484 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
4485 if c['ChangeType'] == 'CompletedSeries': | |
4486 return True; | |
4487 | |
4488 return False | |
4489 | |
4490 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
4491 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
4492 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4493 self.assertFalse(HasCompletedInChanges()) | |
4494 | |
4495 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
4496 | |
4497 for i in range(3): | |
4498 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
4499 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4500 self.assertFalse(HasCompletedInChanges()) | |
4501 | |
4502 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
4503 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4504 self.assertTrue(HasCompletedInChanges()) | |
4505 | |
4506 DoDelete(_REMOTE, '/changes') | |
4507 self.assertFalse(HasCompletedInChanges()) | |
4508 | |
4509 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
4510 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
4511 self.assertFalse(HasCompletedInChanges()) | |
4512 | |
215 | 4513 |
4514 def test_dicomweb(self): | |
4515 def Compare(dicom, reference): | |
4516 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
4517 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
4518 headers = { 'Accept' : 'application/dicom+json' }) | |
4519 with open(GetDatabasePath(reference), 'rb') as c: | |
4520 d = json.load(c) | |
220 | 4521 AssertAlmostEqualRecursive(self, d, b) |
215 | 4522 |
4523 Compare('DummyCT.dcm', 'DummyCT.json') | |
4524 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
4525 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
4526 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
217 | 4527 |
4528 | |
4529 def test_issue_95_encodings(self): | |
319 | 4530 # https://bugs.orthanc-server.com/show_bug.cgi?id=95 |
217 | 4531 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" |
4532 | |
4533 # Very useful tool: "file2" from package "file-kanji" | |
4534 | |
4535 def GetPatientName(dicom): | |
4536 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
4537 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
4538 return j['PatientName'] | |
4539 | |
4540 def ComparePatientName(name, dicom): | |
4541 self.assertEqual(name, GetPatientName(dicom)) | |
4542 | |
4543 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4544 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
4545 | |
4546 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
4547 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
4548 | |
4549 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
4550 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
4551 | |
4552 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
4553 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
4554 | |
4555 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
4556 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
4557 | |
4558 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
4559 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
4560 | |
4561 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
4562 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
4563 | |
4564 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
4565 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
4566 | |
4567 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
4568 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
4569 # Linux console into Emacs automatically reverse the string | |
4570 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
4571 | |
4572 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
4573 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
4574 # characters by default, but copy/paste works with Emacs | |
4575 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
4576 | |
4577 # SCSH32: This SpecificCharacterSet is composed of 2 | |
4578 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
4579 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
4580 # remainer. Orthanc only takes into consideration the first | |
4581 # codepage: This is a limitation. | |
4582 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
4583 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ヤマダ^タロウ=')) | |
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4584 |
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4585 |
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diff
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|
4586 def test_findscu_missing_tags(self): |
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diff
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|
4587 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
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4588 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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diff
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|
4589 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
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|
4590 |
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diff
changeset
|
4591 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
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|
4592 |
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diff
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|
4593 # We have 2 instances... |
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diff
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|
4594 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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diff
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|
4595 self.assertEqual(2, len(patientNames)) |
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diff
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|
4596 self.assertEqual('KNIX', patientNames[0]) |
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diff
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|
4597 self.assertEqual('KNIX', patientNames[1]) |
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diff
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|
4598 |
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217
diff
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|
4599 # ...but only 1 value for the "Rows" tag |
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diff
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|
4600 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
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diff
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|
4601 self.assertEqual(1, len(rows)) |
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diff
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|
4602 self.assertEqual('512', rows[0]) |
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4603 |
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4604 |
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4605 |
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4606 def test_bitbucket_issue_131(self): |
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4607 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
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4608 # StudyInstanceUID in it's database." |
319 | 4609 # https://bugs.orthanc-server.com/show_bug.cgi?id=131 |
219
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4610 |
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4611 # Insert 2 instances, with the same StudyInstanceUID, but with |
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4612 # different patient IDs. Orthanc will create 2 distincts |
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4613 # patients, and the hierarchy of resources above the two |
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4614 # instances will be fully disjoint. |
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4615 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
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4616 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
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4617 |
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4618 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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4619 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4620 |
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4621 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4622 'Level' : 'Study', |
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4623 'Query' : {"PatientID": "A" }})['ID'] |
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4624 |
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4625 # 1 study is matched |
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4626 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4627 |
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4628 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4629 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4630 (_REMOTE, '/queries/%s/retrieve' % a, | |
4631 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
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4632 |
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4633 # The two studies are matched, as we made the request at the |
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4634 # Study level, thus the shared StudyInstanceUID is used as the key |
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4635 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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4636 |
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|
4637 |
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4638 # Match the 2 studies |
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4639 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4640 'Level' : 'Study', |
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4641 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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4642 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4643 DropOrthanc(_LOCAL) |
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4644 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4645 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4646 (_REMOTE, '/queries/%s/retrieve' % a, | |
4647 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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4648 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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4649 |
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4650 |
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4651 # Same test, at the patient level => only 1 instance is transfered |
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4652 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4653 'Level' : 'Patient', |
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4654 'Query' : {"PatientID": "A" }})['ID'] |
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4655 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4656 DropOrthanc(_LOCAL) |
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4657 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4658 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4659 (_REMOTE, '/queries/%s/retrieve' % a, | |
4660 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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4661 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
4662 |
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|
4663 |
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4664 # Same test, at the series level => only 1 instance is transfered |
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4665 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4666 'Level' : 'Series', |
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4667 'Query' : {"PatientID": "A" }})['ID'] |
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4668 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
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4669 DropOrthanc(_LOCAL) |
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4670 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
220 | 4671 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
4672 (_REMOTE, '/queries/%s/retrieve' % a, | |
4673 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
219
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4674 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
4675 |
233
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|
4676 |
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|
4677 def test_bitbucket_issue_136(self): |
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4678 UploadInstance(_REMOTE, 'Issue137.dcm') |
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|
4679 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
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|
4680 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
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4681 self.assertEqual(1, len(patientNames)) |
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4682 self.assertEqual('John Doe', patientNames[0]) |
234
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4683 |
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4684 |
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4685 def test_anonymize_relationships_4(self): |
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4686 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
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4687 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
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4688 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
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4689 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
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4690 |
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|
4691 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
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4692 'application/json')['ID'] |
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4693 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
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4694 self.assertEqual(2, len(series)) |
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4695 |
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4696 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
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4697 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
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4698 self.assertEqual(1, len(cr)) |
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4699 self.assertEqual(1, len(pr)) |
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4700 self.assertEqual(1, len(cr[0]['Instances'])) |
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4701 self.assertEqual(1, len(pr[0]['Instances'])) |
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4702 |
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4703 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
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4704 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
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4705 |
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4706 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
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4707 crinstance['MainDicomTags']['SOPInstanceUID']) |
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4708 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
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4709 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
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4710 |
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|
4711 # This fails on Orthanc <= 1.5.6 |
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4712 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
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4713 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
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4714 |
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4715 |
255
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|
4716 def test_anonymize_relationships_5(self): |
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4717 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
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4718 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
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4719 oStudyId = ct1['ParentStudy'] |
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4720 oCtInstanceId = ct1['ID'] |
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4721 oRtInstanceId = rt1['ID'] |
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4722 |
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4723 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
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4724 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
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4725 |
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4726 # first validate the relationships in the source data |
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4727 oStudyUID = oCtTags['StudyInstanceUID'] |
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4728 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
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4729 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
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4730 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4731 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
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4732 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
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4733 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
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4734 |
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4735 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4736 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
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4737 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
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4738 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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4739 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4740 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4741 |
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4742 ### anonymize |
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4743 |
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4744 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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4745 'application/json')['ID'] |
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4746 |
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4747 ### validate |
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4748 |
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4749 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4750 self.assertEqual(2, len(aSeries)) |
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4751 |
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4752 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4753 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4754 aCtInstanceId = aCt[0]['Instances'][0] |
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4755 aRtInstanceId = aRt[0]['Instances'][0] |
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4756 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4757 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4758 |
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4759 # now validate the relationships in the anonymized data |
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4760 aStudyUID = aCtTags['StudyInstanceUID'] |
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4761 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4762 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4763 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4764 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4765 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4766 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4767 |
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4768 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4769 # make sure all UIDs have been updated |
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4770 self.assertNotEqual(oStudyUID, aStudyUID) |
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4771 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4772 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4773 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4774 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4775 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4776 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4777 |
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4778 # validate the relationships |
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4779 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4780 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
256 | 4781 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
4782 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
255
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4783 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4784 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4785 |
256 | 4786 def test_anonymize_relationships_5b(self): |
4787 # same test as previous one but, this time, we force the StudyInstanceUID | |
4788 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
4789 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
4790 oStudyId = ct1['ParentStudy'] | |
4791 oCtInstanceId = ct1['ID'] | |
4792 oRtInstanceId = rt1['ID'] | |
4793 | |
4794 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
4795 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
4796 | |
4797 ### anonymize while forcing the StudyInstanceUID | |
4798 | |
4799 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
4800 'application/json')['ID'] | |
4801 | |
4802 ### validate | |
4803 | |
4804 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
4805 self.assertEqual(2, len(aSeries)) | |
4806 | |
4807 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
4808 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
4809 aCtInstanceId = aCt[0]['Instances'][0] | |
4810 aRtInstanceId = aRt[0]['Instances'][0] | |
4811 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
4812 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
4813 | |
4814 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
4815 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
4816 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
255
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4817 |
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4818 |
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4819 def test_bitbucket_issue_140(self): |
266 | 4820 # "Modifying private tags with REST API changes VR from LO to |
267 | 4821 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
319 | 4822 # https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
235
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4823 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4824 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4825 |
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4826 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
266 | 4827 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
4828 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
235
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4829 }, 'application/json') ['ID'] |
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4830 |
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4831 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4832 self.assertEqual(1, len(instances)) |
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4833 |
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4834 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4835 t = tags['4321,1012'] |
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4836 self.assertEqual('String', t['Type']) |
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4837 self.assertEqual('RadioButton3', t['Name']) |
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4838 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4839 self.assertEqual('jklmopq', t['Value']) |
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4840 |
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4841 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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4842 t = tags['4321,1012'] |
327 | 4843 self.assertEqual('String', t['Type']) # This fails if DCMTK <= 3.6.1 |
235
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4844 self.assertEqual('RadioButton3', t['Name']) |
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4845 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4846 self.assertEqual('aaabbbccc', t['Value']) |
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4847 |
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4848 |
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4849 def test_find_normalize(self): |
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4850 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4851 |
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4852 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4853 |
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4854 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4855 'Level' : 'Instance', |
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4856 'Query' : { 'Rows' : '42' } |
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4857 }) ['ID'] |
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4858 |
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4859 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4860 self.assertEqual(1, len(b)) |
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diff
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|
4861 self.assertFalse('Rows' in b[0]) |
2de1aec255ae
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diff
changeset
|
4862 |
2de1aec255ae
test_find_normalize
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235
diff
changeset
|
4863 a = DoPost(_REMOTE, '/modalities/self/query', { |
2de1aec255ae
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diff
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|
4864 'Level' : 'Instance', |
2de1aec255ae
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diff
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|
4865 'Query' : { 'Rows' : '42' }, |
2de1aec255ae
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diff
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|
4866 'Normalize' : False |
2de1aec255ae
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diff
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|
4867 }) ['ID'] |
2de1aec255ae
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diff
changeset
|
4868 |
2de1aec255ae
test_find_normalize
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diff
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|
4869 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
2de1aec255ae
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diff
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|
4870 self.assertEqual(0, len(b)) |
2de1aec255ae
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diff
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|
4871 |
2de1aec255ae
test_find_normalize
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diff
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|
4872 a = DoPost(_REMOTE, '/modalities/self/query', { |
2de1aec255ae
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diff
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|
4873 'Level' : 'Instance', |
2de1aec255ae
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diff
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|
4874 'Query' : { 'Rows' : '512' }, |
2de1aec255ae
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|
4875 'Normalize' : False |
2de1aec255ae
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diff
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|
4876 }) ['ID'] |
2de1aec255ae
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235
diff
changeset
|
4877 |
2de1aec255ae
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parents:
235
diff
changeset
|
4878 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
2de1aec255ae
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diff
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|
4879 self.assertEqual(1, len(b)) |
2de1aec255ae
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diff
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|
4880 self.assertTrue('Rows' in b[0]) |
2de1aec255ae
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diff
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|
4881 self.assertEqual('512', b[0]['Rows']) |
237 | 4882 |
4883 a = DoPost(_REMOTE, '/modalities/self/query', { | |
4884 'Level' : 'Instance', | |
4885 'Query' : { 'Rows' : '' }, | |
4886 'Normalize' : False | |
4887 }) ['ID'] | |
4888 | |
4889 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
4890 self.assertEqual(1, len(b)) | |
4891 self.assertTrue('Rows' in b[0]) | |
4892 self.assertEqual('512', b[0]['Rows']) | |
4893 | |
4894 self.assertRaises(Exception, lambda: DoPost( | |
4895 _REMOTE, '/modalities/self/query', { | |
4896 'Level' : 'Instance', | |
4897 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
4898 'Normalize' : False | |
4899 })) | |
243
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diff
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|
4900 |
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test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
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|
4901 |
cccf697a4e13
test_bitbucket_issue_141
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diff
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|
4902 def test_bitbucket_issue_141(self): |
319 | 4903 # https://bugs.orthanc-server.com/show_bug.cgi?id=141 |
243
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diff
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|
4904 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
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diff
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|
4905 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
cccf697a4e13
test_bitbucket_issue_141
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diff
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|
4906 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
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237
diff
changeset
|
4907 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
cccf697a4e13
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diff
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|
4908 pdf = f.read() |
cccf697a4e13
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diff
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|
4909 |
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
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|
4910 b = DoPost(_REMOTE, '/tools/create-dicom', { |
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diff
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|
4911 'Parent' : study, |
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diff
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|
4912 'Tags' : {}, |
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diff
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|
4913 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
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diff
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|
4914 }) ['ID'] |
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diff
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|
4915 |
cccf697a4e13
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237
diff
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|
4916 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
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diff
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|
4917 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
cccf697a4e13
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diff
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|
4918 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
cccf697a4e13
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237
diff
changeset
|
4919 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
247
1abdab0ba0e6
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243
diff
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|
4920 |
1abdab0ba0e6
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243
diff
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|
4921 |
1abdab0ba0e6
test_modifying_missing_patientid
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243
diff
changeset
|
4922 def test_modifying_missing_patientid(self): |
1abdab0ba0e6
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243
diff
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|
4923 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
1abdab0ba0e6
test_modifying_missing_patientid
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diff
changeset
|
4924 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
1abdab0ba0e6
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diff
changeset
|
4925 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
262 | 4926 |
4927 | |
4928 def test_log_level(self): | |
319 | 4929 # https://bugs.orthanc-server.com/show_bug.cgi?id=65 |
262 | 4930 original = DoGet(_REMOTE, '/tools/log-level') |
4931 | |
4932 DoPut(_REMOTE, '/tools/log-level', 'default') | |
4933 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
4934 DoGet(_REMOTE, '/system') | |
4935 | |
4936 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
4937 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
4938 DoGet(_REMOTE, '/system') | |
4939 | |
4940 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
4941 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
4942 DoGet(_REMOTE, '/system') | |
4943 | |
4944 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
4945 | |
4946 # Switch back to the original log level | |
4947 DoPut(_REMOTE, '/tools/log-level', original) | |
264
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263
diff
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|
4948 |
445f498bc1d4
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263
diff
changeset
|
4949 |
445f498bc1d4
test_upload_compressed
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263
diff
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|
4950 def test_upload_compressed(self): |
265 | 4951 # New in Orthanc 1.6.0 |
264
445f498bc1d4
test_upload_compressed
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263
diff
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|
4952 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
445f498bc1d4
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diff
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|
4953 d = f.read() |
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diff
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|
4954 |
445f498bc1d4
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diff
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|
4955 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
445f498bc1d4
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diff
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|
4956 |
445f498bc1d4
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263
diff
changeset
|
4957 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
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|
4958 headers = { 'Content-Encoding' : 'nope' })) |
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263
diff
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|
4959 |
445f498bc1d4
test_upload_compressed
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263
diff
changeset
|
4960 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
445f498bc1d4
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|
4961 headers = { 'Content-Encoding' : 'gzip' }) |
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263
diff
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|
4962 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
262 | 4963 |
4964 | |
263
a2719263fd04
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262
diff
changeset
|
4965 def test_study_series_find_inconsistency(self): |
a2719263fd04
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diff
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|
4966 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
a2719263fd04
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|
4967 |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
4968 def CountAnswers(query): |
a2719263fd04
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262
diff
changeset
|
4969 a = DoPost(_REMOTE, 'modalities/self/query', query) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4970 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
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diff
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|
4971 |
a2719263fd04
test_study_series_find_inconsistency
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diff
changeset
|
4972 # This instance has "SeriesDescription" (0008,103e) tag, but no |
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diff
changeset
|
4973 # "ProtocolName" (0018,1030). Both of those tags are part of |
a2719263fd04
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diff
changeset
|
4974 # the "main DICOM tags" of Orthanc. |
a2719263fd04
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262
diff
changeset
|
4975 UploadInstance(_REMOTE, 'Issue137.dcm') |
a2719263fd04
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diff
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|
4976 |
a2719263fd04
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diff
changeset
|
4977 |
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diff
changeset
|
4978 self.assertEqual(1, CountAnswers({ |
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diff
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|
4979 'Level' : 'Study', |
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diff
changeset
|
4980 })) |
a2719263fd04
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diff
changeset
|
4981 |
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diff
changeset
|
4982 self.assertEqual(1, CountAnswers({ |
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diff
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|
4983 'Level' : 'Series', |
a2719263fd04
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diff
changeset
|
4984 })) |
a2719263fd04
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diff
changeset
|
4985 |
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diff
changeset
|
4986 |
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diff
changeset
|
4987 ## |
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diff
changeset
|
4988 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
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|
4989 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
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|
4990 ## |
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|
4991 |
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diff
changeset
|
4992 # At the study level, the "SeriesDescription" tag is not allowed, but |
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diff
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|
4993 # is wiped out by the normalization |
a2719263fd04
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diff
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|
4994 self.assertEqual(0, CountAnswers({ |
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diff
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|
4995 'Level' : 'Study', |
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diff
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|
4996 'Query' : { |
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diff
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|
4997 'SeriesDescription' : 'NOPE' |
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diff
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|
4998 }, |
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diff
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|
4999 'Normalize' : False |
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|
5000 })) |
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diff
changeset
|
5001 self.assertEqual(0, CountAnswers({ |
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diff
changeset
|
5002 # This test fails on Orthanc <= 1.5.8 |
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diff
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|
5003 'Level' : 'Study', |
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diff
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|
5004 'Query' : { |
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diff
changeset
|
5005 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5006 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5007 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5008 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5009 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5010 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5011 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5012 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5013 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5014 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5015 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5016 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5017 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5018 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5019 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5020 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5021 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5022 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5023 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5024 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5025 # At the series level, the "SeriesDescription" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5026 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5027 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5028 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5029 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5030 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5031 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5032 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5033 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5034 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5035 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5036 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5037 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5038 # "Universal matching" will match all entities, including |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5039 # those with the missing tag |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5040 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5041 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5042 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5043 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5044 'SeriesDescription' : '*' # Wildcard matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5045 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5046 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5047 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5048 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5049 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5050 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5051 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5052 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5053 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5054 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5055 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 'SeriesDescription' : '*MISMATCHED^VALUE*' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 # Universal matching matches any instance, even if the |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 # query is at the study-level, and thus if "SeriesDescription" |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 # makes no sense |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 'SeriesDescription' : '' # Universal matching |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 'Normalize' : normalize, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 ## |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5080 # At the study level, the "ProtocolName" tag is not allowed, but |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5081 # is wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5082 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5083 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5084 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5085 'ProtocolName' : 'NOPE' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5086 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5087 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5088 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5089 self.assertEqual(0, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5090 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5091 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5092 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5093 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5094 'Normalize' : False |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5095 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5096 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5097 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5098 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5099 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5100 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5101 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5102 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5103 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5104 'Level' : 'Study', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5105 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5106 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5107 }, |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5108 'Normalize' : True |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5109 })) |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5110 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5111 for normalize in [ True, False ]: |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5112 # At the series level, the "ProtocolName" tag is allowed, and |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5113 # normalization has no effect |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5114 |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5115 self.assertEqual(1, CountAnswers({ |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5116 'Level' : 'Series', |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5117 'Query' : { |
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5118 'ProtocolName' : '' # Universal matching |
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5119 }, |
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5120 'Normalize' : normalize, |
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5121 })) |
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5122 self.assertEqual(0, CountAnswers({ |
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5123 'Level' : 'Series', |
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5124 'Query' : { |
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5125 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
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5126 }, |
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5127 'Normalize' : normalize, |
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5128 })) |
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5129 self.assertEqual(0, CountAnswers({ |
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5130 'Level' : 'Series', |
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5131 'Query' : { |
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5132 'ProtocolName' : '*MISMATCHED^VALUE*' |
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5133 }, |
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5134 'Normalize' : normalize, |
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5135 })) |
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|
5136 |
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5137 self.assertEqual(1, CountAnswers({ |
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5138 'Level' : 'Study', |
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5139 'Query' : { |
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5140 'ProtocolName' : '' # Universal matching |
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5141 }, |
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5142 'Normalize' : normalize, |
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5143 })) |
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5144 |
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5145 |
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5146 ## |
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5147 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
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5148 ## |
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5149 |
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5150 for level in [ 'Study', 'Series' ] : |
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5151 for normalize in [ True, False ]: |
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5152 self.assertEqual(1, CountAnswers({ |
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5153 'Level' : level, |
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5154 'Query' : { |
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5155 'StudyInstanceUID' : '' # Universal matching |
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5156 }, |
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5157 'Normalize' : normalize, |
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5158 })) |
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5159 self.assertEqual(0, CountAnswers({ |
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5160 'Level' : level, |
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5161 'Query' : { |
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5162 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
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5163 }, |
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5164 'Normalize' : normalize, |
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5165 })) |
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5166 self.assertEqual(1, CountAnswers({ |
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5167 'Level' : level, |
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5168 'Query' : { |
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5169 'StudyInstanceUID' : '4.5.6' # This is the actual value |
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5170 }, |
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5171 'Normalize' : normalize, |
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5172 })) |
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5173 |
269 | 5174 # Wildcard matching is not allowed for this VR |
263
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5175 # This test fails on Orthanc <= 1.5.8 |
269 | 5176 self.assertRaises(Exception, lambda: CountAnswers({ |
263
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5177 'Level' : level, |
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5178 'Query' : { |
269 | 5179 'StudyInstanceUID' : '*' |
263
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5180 }, |
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5181 'Normalize' : normalize, |
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5182 })) |
265 | 5183 |
5184 | |
5185 def test_rendered(self): | |
5186 # New in Orthanc 1.6.0 | |
5187 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
5188 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5189 self.assertEqual("RGB", im.mode) | |
5190 self.assertEqual(41, im.size[0]) | |
5191 self.assertEqual(41, im.size[1]) | |
5192 | |
5193 # http://effbot.org/zone/pil-comparing-images.htm | |
5194 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
5195 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
5196 | |
5197 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
5198 self.assertEqual("RGB", im.mode) | |
5199 self.assertEqual(10, im.size[0]) | |
5200 self.assertEqual(10, im.size[1]) | |
5201 | |
5202 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
5203 self.assertEqual("RGB", im.mode) | |
5204 self.assertEqual(10, im.size[0]) | |
5205 self.assertEqual(10, im.size[1]) | |
5206 | |
5207 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
5208 self.assertEqual("RGB", im.mode) | |
5209 self.assertEqual(128, im.size[0]) | |
5210 self.assertEqual(128, im.size[1]) | |
5211 | |
5212 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
5213 self.assertEqual("RGB", im.mode) | |
5214 self.assertEqual(10, im.size[0]) | |
5215 self.assertEqual(10, im.size[1]) | |
5216 | |
5217 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
5218 self.assertEqual("RGB", im.mode) | |
5219 self.assertEqual(10, im.size[0]) | |
5220 self.assertEqual(10, im.size[1]) | |
5221 | |
5222 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
5223 self.assertEqual("RGB", im.mode) | |
5224 self.assertEqual(5, im.size[0]) | |
5225 self.assertEqual(5, im.size[1]) | |
5226 | |
5227 | |
5228 # Grayscale image | |
5229 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
5230 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5231 self.assertEqual("L", im.mode) | |
5232 self.assertEqual(288, im.size[0]) | |
5233 self.assertEqual(288, im.size[1]) | |
5234 self.assertEqual(0, im.getpixel((0, 0))) | |
5235 | |
5236 # Those are the original windowing parameters that are written | |
5237 # inside the DICOM file | |
5238 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
5239 self.assertEqual("L", im2.mode) | |
5240 self.assertEqual(288, im2.size[0]) | |
5241 self.assertEqual(288, im2.size[1]) | |
5242 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
5243 | |
5244 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
5245 self.assertEqual("L", im.mode) | |
5246 self.assertEqual(512, im.size[0]) | |
5247 self.assertEqual(512, im.size[1]) | |
5248 | |
5249 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
5250 self.assertEqual("L", im.mode) | |
5251 self.assertEqual(10, im.size[0]) | |
5252 self.assertEqual(10, im.size[1]) | |
5253 | |
5254 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
5255 self.assertEqual("L", im.mode) | |
5256 self.assertEqual(10, im.size[0]) | |
5257 self.assertEqual(10, im.size[1]) | |
5258 | |
5259 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
5260 self.assertEqual("L", im.mode) | |
5261 self.assertEqual(1, im.size[0]) | |
5262 self.assertEqual(1, im.size[1]) | |
5263 self.assertEqual(255, im.getpixel((0, 0))) | |
5264 | |
5265 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
5266 self.assertEqual("L", im.mode) | |
5267 self.assertEqual(1, im.size[0]) | |
5268 self.assertEqual(1, im.size[1]) | |
5269 self.assertEqual(0, im.getpixel((0, 0))) | |
5270 | |
5271 | |
5272 # Test monochrome 1 | |
5273 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
5274 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
5275 self.assertEqual("L", im.mode) | |
5276 self.assertEqual(2010, im.size[0]) | |
5277 self.assertEqual(2446, im.size[1]) | |
5278 self.assertEqual(0, im.getpixel((0, 0))) | |
5279 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
5280 self.assertEqual("L", im.mode) | |
5281 self.assertEqual(20, im.size[0]) | |
5282 self.assertEqual(24, im.size[1]) | |
5283 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
5284 self.assertEqual("L", im.mode) | |
5285 self.assertEqual(20, im.size[0]) | |
5286 self.assertEqual(24, im.size[1]) | |
5287 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
5288 self.assertEqual("L", im.mode) | |
5289 self.assertEqual(10, im.size[0]) | |
5290 self.assertEqual(12, im.size[1]) | |
5291 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
5292 self.assertEqual("L", im.mode) | |
5293 self.assertEqual(20, im.size[0]) | |
5294 self.assertEqual(24, im.size[1]) | |
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5295 |
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5296 |
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5297 def test_bitbucket_issue_154(self): |
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5298 # "Matching against list of UID-s by C-MOVE" |
319 | 5299 # https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
268
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5300 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
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5301 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
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5302 |
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5303 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
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5304 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
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5305 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
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5306 |
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5307 # C-FIND is working on list of UIDs |
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5308 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
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5309 '-k', 'StudyInstanceUID=%s' % study, |
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5310 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
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5311 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
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5312 self.assertEqual(2, len(series)) |
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5313 self.assertTrue(series1 in series) |
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5314 self.assertTrue(series2 in series) |
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5315 |
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5316 # Individual retrieval is working in Orthanc < 1.6.0 |
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5317 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5318 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5319 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5320 '-k', 'StudyInstanceUID=%s' % study, |
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5321 '-k', 'SeriesInstanceUID=%s' % series1, |
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5322 ]))) |
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5323 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5324 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5325 '-k', 'StudyInstanceUID=%s' % study, |
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5326 '-k', 'SeriesInstanceUID=%s' % series2, |
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5327 ]))) |
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5328 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5329 |
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5330 DropOrthanc(_LOCAL) |
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5331 |
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5332 # But list matching is working only in Orthanc >= 1.6.0 |
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5333 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5334 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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|
5335 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5336 '-k', 'StudyInstanceUID=%s' % study, |
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5337 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5338 ]))) |
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5339 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
279
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5340 |
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5341 |
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5342 def test_storage_commitment_api(self): |
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5343 # Storage commitment is available since Orthanc 1.6.0 |
280
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5344 |
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5345 def WaitTransaction(uid): |
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5346 while True: |
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5347 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5348 if s['Status'] != 'Pending': |
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5349 return s |
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5350 else: |
342
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5351 time.sleep(0.01) |
280
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5352 |
281 | 5353 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
279
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5354 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5355 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5356 |
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5357 # Against self |
281 | 5358 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5359 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
5360 }) ['ID'] | |
279
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5361 self.assertTrue(transaction.startswith('2.25.')) |
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5362 |
280
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5363 result = WaitTransaction(transaction) |
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5364 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5365 self.assertEqual('Success', result['Status']) |
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5366 self.assertEqual(1, len(result['Success'])) |
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5367 self.assertEqual(0, len(result['Failures'])) |
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5368 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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5369 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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5370 |
281 | 5371 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5372 "DicomInstances" : [ | |
5373 { 'SOPClassUID' : sopClassUid, | |
5374 'SOPInstanceUID' : sopInstanceUid }, | |
5375 ], | |
5376 }) | |
5377 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
5378 self.assertEqual(result, WaitTransaction(transaction)) | |
5379 | |
5380 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
5381 "Resources" : [ | |
5382 instance['ID'], | |
5383 instance['ParentSeries'], | |
5384 instance['ParentStudy'], | |
5385 instance['ParentPatient'], | |
5386 ] | |
5387 }) | |
280
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5388 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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5389 self.assertEqual(result, WaitTransaction(transaction)) |
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|
5390 |
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5391 |
281 | 5392 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
5393 "DicomInstances" : [ | |
5394 [ 'nope', 'nope2' ], | |
5395 [ sopClassUid, sopInstanceUid ], | |
5396 ], | |
5397 }) ['ID'] | |
279
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5398 self.assertTrue(transaction.startswith('2.25.')) |
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|
5399 |
280
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|
5400 result = WaitTransaction(transaction) |
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|
5401 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5402 self.assertEqual('Failure', result['Status']) |
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5403 self.assertEqual(1, len(result['Success'])) |
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|
5404 self.assertEqual(1, len(result['Failures'])) |
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|
5405 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5406 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5407 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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5408 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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|
5409 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5410 |
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|
5411 # Cannot remove items from a failed storage commitment transaction |
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|
5412 self.assertRaises(Exception, lambda: |
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|
5413 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5414 |
279
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|
5415 |
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|
5416 # Against Orthanc 0.8.6, that does not support storage commitment |
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|
5417 self.assertRaises(Exception, lambda: |
281 | 5418 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
5419 "DicomInstances" : [ | |
5420 [ sopClassUid, sopInstanceUid ], | |
5421 ] | |
5422 })) | |
279
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5423 |
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|
5424 |
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|
5425 |
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|
5426 def test_storage_commitment_store(self): |
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5427 # Storage commitment is available since Orthanc 1.6.0 |
280
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|
5428 |
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|
5429 def WaitTransaction(uid): |
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5430 while True: |
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5431 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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|
5432 if s['Status'] != 'Pending': |
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|
5433 return s |
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|
5434 else: |
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|
5435 time.sleep(0.01) |
280
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|
5436 |
279
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5437 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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5438 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5439 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5440 |
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5441 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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5442 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5443 'Resources' : [ i ], |
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5444 'StorageCommitment' : True, |
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5445 })) |
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5446 |
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5447 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5448 'Resources' : [ i ], |
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5449 'StorageCommitment' : False, |
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5450 }) |
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5451 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5452 |
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5453 j = DoPost(_REMOTE, '/modalities/self/store', { |
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5454 'Resources' : [ i ], |
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5455 'StorageCommitment' : True, |
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diff
changeset
|
5456 }) |
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5457 |
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5458 transaction = j['StorageCommitmentTransactionUID'] |
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starting tests for storage commitment
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269
diff
changeset
|
5459 self.assertTrue(transaction.startswith('2.25.')) |
280
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5460 |
5daa3896981c
testing storage commitment reports
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parents:
279
diff
changeset
|
5461 result = WaitTransaction(transaction) |
5daa3896981c
testing storage commitment reports
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279
diff
changeset
|
5462 self.assertEqual('ORTHANC', result['RemoteAET']) |
5daa3896981c
testing storage commitment reports
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279
diff
changeset
|
5463 self.assertEqual('Success', result['Status']) |
5daa3896981c
testing storage commitment reports
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diff
changeset
|
5464 self.assertEqual(1, len(result['Success'])) |
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testing storage commitment reports
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279
diff
changeset
|
5465 self.assertEqual(0, len(result['Failures'])) |
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testing storage commitment reports
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diff
changeset
|
5466 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
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testing storage commitment reports
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diff
changeset
|
5467 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5468 result['Success'][0]['SOPInstanceUID']) |
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testing storage commitment reports
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parents:
279
diff
changeset
|
5469 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5470 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5471 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5472 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
285
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5473 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5474 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5475 def test_store_straight(self): # New in Orthanc 1.6.1 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
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281
diff
changeset
|
5476 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5477 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5478 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5479 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5480 dicom = f.read() |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5481 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5482 self.assertRaises(Exception, lambda: DoPost( |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5483 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5484 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5485 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5486 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5487 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5488 answer['SOPClassUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5489 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5490 answer['SOPInstanceUID']) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5491 |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5492 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5493 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5494 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5495 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5496 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5497 # Add a RLE-encoded DICOM file |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5498 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5499 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5500 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5501 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5502 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5503 # Export the instance, with transcoding: "_REMOTE" is the |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5504 # Orthanc server being tested |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5505 try: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5506 DoDelete(_REMOTE, '/modalities/toto') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5507 except: |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5508 pass |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5509 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5510 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5511 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5512 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5513 j = DoGet(_LOCAL, '/instances') |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5514 self.assertEqual(1, len(j)) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5515 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5516 self.assertTrue(uncompressedSize > rleSize / 2) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5517 |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5518 # Export, with transcoding disabled => this fails |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5519 params['AllowTranscoding'] = False |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5520 DoPut(_REMOTE, '/modalities/toto', params) |
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5521 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5522 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5523 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5524 def test_bitbucket_issue_169(self): |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5525 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5526 dicom = bz2.decompress(f.read()) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5527 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5528 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5529 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5530 self.assertEqual(44350560, len(dicom)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5531 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5532 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5533 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5534 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5535 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5536 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5537 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5538 j = DoGet(_LOCAL, '/instances') |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5539 self.assertEqual(1, len(j)) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5540 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5541 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5542 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5543 # Little Endian" (1.2.840.10008.1.2) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5544 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5545 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5546 |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5547 # In Orthanc <= 1.6.1, the value of the private tags was lost |
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test_bitbucket_issue_169
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289
diff
changeset
|
5548 # because of this transcoding |
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test_bitbucket_issue_169
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parents:
289
diff
changeset
|
5549 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5550 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5551 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5552 |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5553 def test_modify_transcode_instance(self): |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5554 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5555 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5556 DoGet(_REMOTE, '/instances/%s/file' % i))) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5557 |
299
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5558 a = ExtractDicomTags(DoGet(_REMOTE, '/instances/%s/file' % i), [ 'SOPInstanceUID' ]) [0] |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5559 self.assertTrue(len(a) > 20) |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5560 |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5561 SYNTAXES = [ |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5562 '1.2.840.10008.1.2', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
293
diff
changeset
|
5563 '1.2.840.10008.1.2.1', |
300
d6c2eb5a2603
disabling test on Deflated Explicit VR Little Endian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
299
diff
changeset
|
5564 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
299
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diff
changeset
|
5565 '1.2.840.10008.1.2.2', |
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diff
changeset
|
5566 '1.2.840.10008.1.2.4.50', |
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diff
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|
5567 '1.2.840.10008.1.2.4.51', |
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diff
changeset
|
5568 '1.2.840.10008.1.2.4.57', |
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diff
changeset
|
5569 '1.2.840.10008.1.2.4.70', |
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diff
changeset
|
5570 ] |
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diff
changeset
|
5571 |
304 | 5572 if HasGdcmPlugin(_REMOTE): |
299
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diff
changeset
|
5573 SYNTAXES = SYNTAXES + [ |
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diff
changeset
|
5574 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
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diff
changeset
|
5575 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5576 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5577 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5578 ] |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5579 |
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HasGdcmPlugin() test
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293
diff
changeset
|
5580 for syntax in SYNTAXES: |
291
cfa785074c64
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5581 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
cfa785074c64
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5582 'Transcode' : syntax, |
299
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diff
changeset
|
5583 'Keep' : [ 'SOPInstanceUID' ], |
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diff
changeset
|
5584 'Force' : True, |
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5585 }) |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5586 |
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5587 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5588 |
299
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5589 b = ExtractDicomTags(transcoded, [ 'SOPInstanceUID' ]) [0] |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5590 self.assertTrue(len(b) > 20) |
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293
diff
changeset
|
5591 if syntax in [ '1.2.840.10008.1.2.4.50', |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5592 '1.2.840.10008.1.2.4.51', |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5593 '1.2.840.10008.1.2.4.81', |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5594 '1.2.840.10008.1.2.4.91' ]: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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293
diff
changeset
|
5595 # Lossy transcoding: The SOP instance UID must have changed |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5596 self.assertNotEqual(a, b) |
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HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5597 else: |
c2144cf4bd83
HasGdcmPlugin() test
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5598 self.assertEqual(a, b) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5599 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5600 def test_archive_transcode(self): |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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291
diff
changeset
|
5601 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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291
diff
changeset
|
5602 |
293
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5603 # GET on "/media" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5604 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5605 self.assertEqual(2, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5606 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5607 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5608 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5609 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5610 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5611 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5612 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5613 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5614 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5615 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5616 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5617 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5618 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5619 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5620 # POST on "/media" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5621 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5622 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5623 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5624 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5625 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5626 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5627 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5628 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5629 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5630 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5631 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5632 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5633 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5634 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5635 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5636 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5637 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5638 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5639 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5640 # GET on "/archive" |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5641 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5642 self.assertEqual(1, len(z.namelist())) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5643 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5644 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5645 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5646 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5647 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5648 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5649 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5650 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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291
diff
changeset
|
5651 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5652 |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5653 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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291
diff
changeset
|
5654 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
293
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5655 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5656 |
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5657 # POST on "/archive" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5658 self.assertRaises(Exception, lambda: PostArchive( |
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5659 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5660 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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292
diff
changeset
|
5661 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5662 'Transcode' : '1.2.840.10008.1.2.4.50', |
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extended test_archive_transcode
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diff
changeset
|
5663 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
5664 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5665 |
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5666 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
032722c3e919
extended test_archive_transcode
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diff
changeset
|
5667 'Transcode' : '1.2.840.10008.1.2.4.51', |
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extended test_archive_transcode
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diff
changeset
|
5668 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5669 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5670 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5671 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5672 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5673 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5674 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5675 |
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5676 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5677 # "/tools/create-*" |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5678 z = PostArchive(_REMOTE, '/tools/create-archive', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5679 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5680 'Transcode' : '1.2.840.10008.1.2.4.50', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5681 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5682 self.assertEqual(1, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5683 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5684 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5685 z = PostArchive(_REMOTE, '/tools/create-media', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5686 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5687 'Transcode' : '1.2.840.10008.1.2.4.51', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5688 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5689 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5690 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5691 |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5692 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5693 'Resources' : [ info['ParentStudy'] ], |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5694 'Transcode' : '1.2.840.10008.1.2.4.57', |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5695 }) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5696 self.assertEqual(2, len(z.namelist())) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5697 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5698 |
308 | 5699 |
301
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5700 def test_modify_keep_source(self): |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5701 # https://groups.google.com/d/msg/orthanc-users/CgU-Wg8vDio/BY5ZWcDEAgAJ |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5702 i = UploadInstance(_REMOTE, 'DummyCT.dcm') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5703 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5704 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5705 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5706 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5707 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5708 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5709 'KeepSource' : True, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5710 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5711 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5712 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5713 self.assertEqual(2, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5714 self.assertTrue(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5715 self.assertTrue(j['ID'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5716 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5717 DoDelete(_REMOTE, '/studies/%s' % j['ID']) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5718 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5719 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5720 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5721 'Replace' : { |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5722 'StationName' : 'TEST', |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5723 }, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5724 'KeepSource' : False, |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5725 }) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5726 |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5727 s = DoGet(_REMOTE, '/studies') |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5728 self.assertEqual(1, len(s)) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5729 self.assertFalse(i['ParentStudy'] in s) |
6652d5720a45
test_modify_keep_source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
300
diff
changeset
|
5730 self.assertTrue(j['ID'] in s) |
302
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5731 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5732 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5733 def test_modify_transcode_study(self): |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5734 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5735 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5736 DoGet(_REMOTE, '/instances/%s/file' % i['ID']))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5737 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5738 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5739 j = DoPost(_REMOTE, '/studies/%s/modify' % i['ParentStudy'], { |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5740 'Transcode' : '1.2.840.10008.1.2.4.50', |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5741 'KeepSource' : False |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5742 }) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5743 |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5744 k = DoGet(_REMOTE, '/instances') |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5745 self.assertEqual(1, len(k)) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5746 self.assertEqual(i['ID'], DoGet(_REMOTE, '/instances/%s/metadata?expand' % k[0]) ['ModifiedFrom']) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5747 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax( |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5748 DoGet(_REMOTE, '/instances/%s/file' % k[0]))) |
22b6dd0f8c84
test_modify_transcode_study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
301
diff
changeset
|
5749 |
305
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5750 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5751 def test_store_peer_transcoding(self): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5752 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5753 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5754 SYNTAXES = [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5755 '1.2.840.10008.1.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5756 '1.2.840.10008.1.2.1', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5757 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian (cannot be decoded in debug mode if Orthanc is statically linked against DCMTK 3.6.5) |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5758 '1.2.840.10008.1.2.2', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5759 '1.2.840.10008.1.2.4.50', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5760 '1.2.840.10008.1.2.4.51', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5761 '1.2.840.10008.1.2.4.57', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5762 '1.2.840.10008.1.2.4.70', |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5763 ] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5764 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5765 if HasGdcmPlugin(_REMOTE): |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5766 SYNTAXES = SYNTAXES + [ |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5767 '1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5768 '1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5769 '1.2.840.10008.1.2.4.90', # JPEG2k, unavailable without GDCM |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5770 '1.2.840.10008.1.2.4.91', # JPEG2k, unavailable without GDCM |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5771 ] |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5772 |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5773 for syntax in SYNTAXES: |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5774 body = { |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5775 'Resources' : [ i ], |
ed20ead1a8b6
test_store_peer_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
5776 } |
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5777 |
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5778 if syntax != '1.2.840.10008.1.2.1': |
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5779 body['Transcode'] = syntax |
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5780 |
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5781 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5782 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5783 DoPost(_REMOTE, '/peers/peer/store', body, 'text/plain') |
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5784 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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5785 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5786 self.assertEqual(syntax, GetTransferSyntax( |
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5787 DoGet(_LOCAL, '/instances/%s/file' % DoGet(_LOCAL, '/instances') [0]))) |
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5788 |
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5789 DropOrthanc(_LOCAL) |
308 | 5790 |
5791 | |
295 | 5792 def test_getscu(self): |
307 | 5793 def CleanTarget(): |
5794 if os.path.isdir('/tmp/GETSCU'): | |
5795 shutil.rmtree('/tmp/GETSCU') | |
5796 os.makedirs('/tmp/GETSCU') | |
5797 | |
306
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5798 env = {} |
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5799 if _DOCKER: |
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5800 # This is "getscu" from DCMTK 3.6.5 compiled using LSB, |
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5801 # and running in a GNU/Linux distribution running DCMTK |
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5802 # 3.6.0. Tell "getscu" where it can find the DICOM dictionary. |
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5803 env['DCMDICTPATH'] = '/usr/share/libdcmtk2/dicom.dic' |
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5804 |
295 | 5805 # no transcoding required |
307 | 5806 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
5807 | |
5808 CleanTarget() | |
295 | 5809 |
306
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5810 subprocess.check_call([ |
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5811 FindExecutable('getscu'), |
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5812 _REMOTE['Server'], |
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5813 str(_REMOTE['DicomPort']), |
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5814 '-aec', 'ORTHANC', |
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|
5815 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc |
307 | 5816 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775', |
306
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5817 '-k', '0008,0052=STUDY', |
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5818 '--output-directory', '/tmp/GETSCU/' |
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5819 ], env = env) |
295 | 5820 |
311 | 5821 f1 = '/tmp/GETSCU/MR.1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
5822 self.assertTrue(os.path.isfile(f1)) | |
5823 with open(f1, 'rb') as f: | |
5824 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5825 | |
307 | 5826 CleanTarget() |
295 | 5827 |
5828 # transcoding required | |
311 | 5829 UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
307 | 5830 |
5831 subprocess.check_call([ | |
5832 FindExecutable('getscu'), | |
5833 _REMOTE['Server'], | |
5834 str(_REMOTE['DicomPort']), | |
5835 '-aec', 'ORTHANC', | |
5836 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
311 | 5837 '-k', '0020,000d=2.16.840.1.113669.632.20.1211.10000357775\\1.2.840.113663.1298.6234813.1.298.20000329.1115122', |
307 | 5838 '-k', '0008,0052=STUDY', |
5839 '--output-directory', '/tmp/GETSCU/' | |
5840 ], env = env) | |
5841 | |
311 | 5842 self.assertTrue(os.path.isfile(f1)) |
5843 with open(f1, 'rb') as f: | |
5844 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
5845 | |
5846 # This file is transcoded from "1.2.840.10008.1.2.4.50" to "1.2.840.10008.1.2.1" | |
5847 # (LittleEndianExplicit is proposed by default by "getscu") | |
5848 f2 = '/tmp/GETSCU/US.1.2.840.113663.1298.1.3.715.20000329.1115326' | |
5849 self.assertTrue(os.path.isfile(f2)) | |
5850 with open(f2, 'rb') as f: | |
5851 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(f.read())) | |
324
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5852 |
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5853 |
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|
5854 def test_findscu_truncation(self): |
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5855 # https://groups.google.com/forum/#!msg/orthanc-users/FkckWAHvso8/UbRBAhQ5CwAJ |
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5856 # Fixed by: https://hg.orthanc-server.com/orthanc/rev/2724977419fb |
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5857 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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|
5858 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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|
5859 |
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|
5860 study = '1.3.46.670589.7.5.8.80001255161.20000323.151537.1' |
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|
5861 |
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|
5862 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyInstanceUID' ]) |
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|
5863 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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|
5864 self.assertEqual(2, len(result)) |
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diff
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|
5865 |
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|
5866 # The "StudyInstanceUID" is set as a list of 5 times the same |
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|
5867 # study, leading to a string of 249 characters |
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|
5868 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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diff
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|
5869 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s' % (( study, ) * 5) ]) |
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diff
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|
5870 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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diff
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|
5871 self.assertEqual(1, len(result)) |
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diff
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|
5872 |
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diff
changeset
|
5873 # The "StudyInstanceUID" is set as a list of 6 times the same |
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|
5874 # study, leading to a string of 299 characters. In Orthanc <= |
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diff
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|
5875 # 1.7.2, this is above the value of ORTHANC_MAXIMUM_TAG_LENGTH |
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5876 # == 256, and is thus wiped out by C-FIND SCP. As a |
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diff
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|
5877 # consequence, Orthanc <= 1.7.2 doesn't apply the filter on |
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diff
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|
5878 # "StudyInstanceUID" and returns all the available |
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diff
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|
5879 # studies (i.e. 2). This issue was fixed in Orthanc 1.7.3. |
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|
5880 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', |
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diff
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|
5881 'StudyInstanceUID=%s\\%s\\%s\\%s\\%s\\%s' % (( study, ) * 6) ]) |
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diff
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|
5882 result = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
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|
5883 self.assertEqual(1, len(result)) |
328
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diff
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|
5884 |
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diff
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|
5885 |
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diff
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|
5886 def test_store_compressed(self): |
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diff
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|
5887 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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diff
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|
5888 dicom = f.read() |
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|
5889 i = DoPost(_REMOTE, '/instances', dicom) ['ID'] |
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|
5890 sourceSize = len(dicom) |
324
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|
5891 |
328
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|
5892 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5893 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
5894 |
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|
5895 # Sending to the local Orthanc 0.8.6 server, without compression: OK |
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5896 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5897 _REMOTE, '/peers/peer/store', { |
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5898 'Resources' : [ i ], |
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5899 'Synchronous' : False, |
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5900 })) |
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|
5901 |
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|
5902 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5903 self.assertFalse(job['Content']['Compress']) |
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5904 self.assertEqual('', job['Content']['Peer'][2]) # Password must not be reported |
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5905 self.assertEqual(str(sourceSize), job['Content']['Size']) |
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|
5906 |
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|
5907 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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|
5908 DropOrthanc(_LOCAL) |
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|
5909 |
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|
5910 # Sending to the local Orthanc 0.8.6 server, with compression: |
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5911 # Not supported by Orthanc 0.8.6 => failure |
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5912 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/peers/peer/store', { |
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5913 'Resources' : [ i ], |
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5914 'Compress' : True, |
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5915 })) |
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5916 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
5917 |
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|
5918 # Sending to the tested remote server, with compression: OK |
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5919 jobId = MonitorJob2(_REMOTE, lambda: DoPost( |
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5920 _REMOTE, '/peers/self/store', { |
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5921 'Resources' : [ i ], |
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5922 'Compress' : True, |
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5923 'Synchronous' : False, |
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5924 })) |
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5925 |
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5926 job = DoGet(_REMOTE, '/jobs/%s' % jobId) |
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5927 self.assertTrue(job['Content']['Compress']) |
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5928 |
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5929 # Compression must have divided the size of the sent data at least twice |
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5930 self.assertLess(int(job['Content']['Size']), sourceSize / 2) |
332 | 5931 |
5932 | |
5933 def test_move_ambra(self): | |
5934 # "Orthanc + Ambra: Query/Retrieve" (2020-08-25) | |
5935 # https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ | |
5936 | |
5937 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') | |
5938 | |
5939 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5940 '--study', | |
5941 '-k', 'StudyInstanceUID=' | |
5942 ]))) | |
5943 | |
5944 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5945 '--study', | |
5946 '-k', 'AccessionNumber=', | |
5947 ]))) | |
5948 | |
5949 self.assertFalse(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5950 '--study', | |
5951 '-k', 'AccessionNumber=', | |
5952 '-k', 'StudyInstanceUID=' | |
5953 ]))) | |
5954 | |
5955 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5956 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5957 '--study', | |
5958 '-k', 'AccessionNumber=CT16000988', | |
5959 '-k', 'StudyInstanceUID=', | |
5960 ]))) | |
5961 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5962 DropOrthanc(_LOCAL) | |
5963 | |
5964 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5965 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5966 '--study', | |
5967 '-k', 'AccessionNumber=CT16000988', | |
5968 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39', | |
5969 ]))) | |
5970 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5971 DropOrthanc(_LOCAL) | |
5972 | |
5973 # This fails on Orthanc <= 1.7.3 | |
5974 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
5975 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ | |
5976 '--study', | |
5977 '-k', 'AccessionNumber=', | |
5978 '-k', 'StudyInstanceUID=1.2.840.113619.2.278.3.4194965761.659.1468842739.39' | |
5979 ]))) | |
5980 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
5981 DropOrthanc(_LOCAL) | |
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5982 |
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5983 |
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5984 def test_decode_elscint(self): |
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5985 # https://groups.google.com/g/orthanc-users/c/d9anAx6lSis/m/qEzm1x3PAAAJ |
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5986 a = UploadInstance(_REMOTE, '2020-09-12-ELSCINT1-PMSCT_RLE1.dcm')['ID'] |
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5987 b = UploadInstance(_REMOTE, '2020-09-11-Christopher-ELSCINT1-Raw.dcm')['ID'] |
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5988 |
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5989 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % a) |
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5990 self.assertEqual("L", im.mode) |
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5991 self.assertEqual(512, im.size[0]) |
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5992 self.assertEqual(512, im.size[1]) |
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5993 |
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5994 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % b) |
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5995 self.assertEqual("L", im.mode) |
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5996 self.assertEqual(512, im.size[0]) |
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5997 self.assertEqual(512, im.size[1]) |
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5998 |
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5999 # The two tests below fail on Orthanc <= 1.7.3 |
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6000 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % a) |
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6001 self.assertEqual(512 * 512 * 2, len(raw)) |
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6002 |
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6003 raw = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % b) |
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6004 self.assertEqual(512 * 512 * 2, len(raw)) |
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6005 |
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6006 |
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6007 def test_rest_modalities_in_study_2(self): |
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6008 # Problem reported by Alain Mazy on 2020-09-15 |
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6009 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
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6010 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
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6011 |
335
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6012 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=' ]) |
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6013 modalitiesInStudy = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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6014 self.assertEqual(1, len(modalitiesInStudy)) |
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6015 self.assertEqual('CT\\PT ', modalitiesInStudy[0]) |
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6016 |
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6017 for i in [ '', 'CT', 'PT', 'UX', 'UX\\MR', 'CT\\PT', 'UX\\PT', 'CT\\PT', 'UX\\CT\\PT' ]: |
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6018 # The empty string '' corresponds to universal matching. |
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6019 # The case where "i == 'CT'" failed in Orthanc <= 1.7.3. |
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6020 |
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6021 if i in [ 'UX', 'UX\\MR' ]: |
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6022 expected = 0 |
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6023 else: |
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6024 expected = 1 |
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6025 |
334
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6026 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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6027 'Query' : { 'ModalitiesInStudy' : i }}) |
335
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6028 self.assertEqual(expected, len(a)) |
334
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6029 |
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6030 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0020,000d=', '-k', '0008,0061=%s' % i ]) |
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6031 studyInstanceUid = re.findall('\(0020,000d\).*?\[(.*?)\]', i) |
335
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6032 self.assertEqual(expected, len(studyInstanceUid)) |
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6033 |
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6034 |
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6035 def test_webdav(self): |
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6036 self.assertRaises(Exception, lambda: DoPropFind(_REMOTE, '/webdav/', 2)) |
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6037 |
342
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6038 for suffix in [ '', '/' ]: |
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6039 f = DoPropFind(_REMOTE, '/webdav' + suffix, 0) |
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6040 self.assertEqual(1, len(f)) |
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6041 self.assertTrue('/webdav/' in f.keys()) |
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6042 self.assertTrue(f['/webdav/']['folder']) |
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6043 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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6044 |
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6045 f = DoPropFind(_REMOTE, '/webdav' + suffix, 1) |
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6046 self.assertEqual(6, len(f)) |
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6047 self.assertTrue(f['/webdav/']['folder']) |
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6048 self.assertEqual('webdav', f['/webdav/']['displayname']) |
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6049 |
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6050 for i in [ 'by-dates', 'by-patients', 'by-studies', 'by-uids', 'uploads' ]: |
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6051 self.assertTrue(f['/webdav/%s' % i]['folder']) |
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6052 self.assertEqual(i, f['/webdav/%s' % i]['displayname']) |
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6053 |
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6054 for depth in [ 0, 1 ]: |
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6055 for suffix2 in [ '', '/' ]: |
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6056 g = DoPropFind(_REMOTE, '/webdav/%s%s' % (i, suffix2), depth) |
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6057 |
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6058 if i == 'uploads': |
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6059 # Empty folders might still exist in "/uploads/" |
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6060 self.assertTrue('/webdav/uploads/' in g) |
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6061 self.assertEqual('uploads', g['/webdav/uploads/']['displayname']) |
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6062 for j in g.items(): |
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6063 self.assertTrue(g.items()[0][1]['folder']) |
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6064 else: |
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6065 self.assertEqual(1, len(g)) |
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6066 self.assertEqual('/webdav/%s/' % i, g.items()[0][0]) |
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6067 self.assertTrue(g.items()[0][1]['folder']) |
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6068 self.assertEqual(i, g.items()[0][1]['displayname']) |
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6069 |
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6070 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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6071 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
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6072 DoPut(_REMOTE, '/webdav/uploads/dummy', f.read(), 'text/plain') |
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6073 |
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6074 while len(DoGet(_REMOTE, '/patients')) == 0: |
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6075 time.sleep(0.01) |
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6076 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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6077 |
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6078 |
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6079 def test_log_categories(self): |
350 | 6080 original = DoGet(_REMOTE, '/tools/log-level-http') |
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6081 |
350 | 6082 DoPut(_REMOTE, '/tools/log-level-http', 'default') |
6083 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level-http')) | |
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6084 DoGet(_REMOTE, '/system') |
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6085 |
350 | 6086 DoPut(_REMOTE, '/tools/log-level-http', 'verbose') |
6087 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level-http')) | |
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6088 DoGet(_REMOTE, '/system') |
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6089 |
350 | 6090 DoPut(_REMOTE, '/tools/log-level-http', 'trace') |
6091 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level-http')) | |
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6092 DoGet(_REMOTE, '/system') |
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6093 |
350 | 6094 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-http', 'nope')) |
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6095 |
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6096 # Switch back to the original log level |
350 | 6097 DoPut(_REMOTE, '/tools/log-level-http', original) |
6098 | |
6099 for c in [ 'generic', 'http', 'dicom', 'plugins', 'sqlite', 'lua', 'jobs' ]: | |
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6100 DoPut(_REMOTE, '/tools/log-level-%s' % c, DoGet(_REMOTE, '/tools/log-level-%s' % c)) |
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6101 |
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6102 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level-nope', 'default')) |