Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 296:b55b959647ed c-get
merge default -> c-get
| author | Alain Mazy <alain@mazy.be> |
|---|---|
| date | Tue, 12 May 2020 14:36:29 +0200 |
| parents | 946b2199f481 032722c3e919 |
| children | da2be3ff2db5 |
| rev | line source |
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| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
|
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24 import base64 |
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25 import bz2 |
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26 import copy |
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27 import pprint |
| 14 | 28 import tempfile |
| 3 | 29 import unittest |
| 295 | 30 import shutil |
| 3 | 31 |
| 11 | 32 from PIL import ImageChops |
| 3 | 33 from Toolbox import * |
| 13 | 34 from xml.dom import minidom |
| 3 | 35 |
| 36 _LOCAL = None | |
| 37 _REMOTE = None | |
| 38 | |
| 39 | |
| 40 def SetOrthancParameters(local, remote): | |
| 41 global _LOCAL, _REMOTE | |
| 42 _LOCAL = local | |
| 43 _REMOTE = remote | |
| 44 | |
| 45 | |
| 14 | 46 def ExtractDicomTags(rawDicom, tags): |
| 47 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 48 f.write(rawDicom) | |
| 49 f.flush() | |
| 45 | 50 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 51 |
| 52 result = [] | |
| 53 for tag in tags: | |
| 54 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 55 if match == None: | |
| 56 result.append('') | |
| 57 else: | |
| 58 result.append(match.group(1)) | |
| 59 | |
| 60 return result | |
| 61 | |
| 62 | |
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63 def CompareLists(a, b): |
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64 if len(a) != len(b): |
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65 return False |
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66 |
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67 for i in range(len(a)): |
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68 d = a[i] - b[i] |
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69 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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70 return False |
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71 |
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72 return True |
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73 |
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74 |
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75 def CompareTags(a, b, tagsToIgnore): |
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76 for i in tagsToIgnore: |
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77 if i in a: |
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78 del a[i] |
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79 if i in b: |
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80 del b[i] |
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81 |
| 123 | 82 if a.keys() == b.keys(): |
| 83 return True | |
| 84 else: | |
| 85 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 86 return False | |
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87 |
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88 |
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89 def CallFindScu(args): |
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90 p = subprocess.Popen([ FindExecutable('findscu'), |
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91 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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92 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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93 stderr=subprocess.PIPE) |
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94 return p.communicate()[1] |
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95 |
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96 |
| 142 | 97 def GetMoveScuCommand(): |
| 98 return [ | |
| 99 FindExecutable('movescu'), | |
| 100 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 101 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 102 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 103 _REMOTE['Server'], | |
| 104 str(_REMOTE['DicomPort']) | |
| 105 ] | |
| 106 | |
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107 |
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108 def CallMoveScu(args): |
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109 try: |
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110 subprocess.check_call(GetMoveScuCommand() + args, |
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111 stderr=subprocess.PIPE) |
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112 except subprocess.CalledProcessError as e: |
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113 # The error code "69" corresponds to "EXITCODE_CMOVE_ERROR", |
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114 # that has been introduced in DCMTK 3.6.2. This error code is |
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115 # expected by some tests that try and C-MOVE non-existing |
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116 # DICOM instances. |
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117 # https://groups.google.com/d/msg/orthanc-users/DCRc5NeSCbM/DG-pSWj-BwAJ |
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118 if e.returncode != 69: |
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119 raise e |
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120 |
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121 |
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122 def GenerateTestSequence(): |
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123 return [ |
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124 { |
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125 'StudyDescription': 'Hello^', |
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126 'ReferencedStudySequence' : [ |
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127 { |
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128 'StudyDescription': 'Toto', |
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129 }, |
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130 { |
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131 'StudyDescription': 'Tata', |
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132 }, |
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133 ] |
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134 }, |
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135 { |
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136 'StudyDescription': 'Sébastien^', |
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137 'StudyDate' : '19700202', |
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138 } |
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139 ] |
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140 |
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141 |
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142 |
| 3 | 143 class Orthanc(unittest.TestCase): |
| 144 def setUp(self): | |
| 83 | 145 if (sys.version_info >= (3, 0)): |
| 146 # Remove annoying warnings about unclosed socket in Python 3 | |
| 147 import warnings | |
| 148 warnings.simplefilter("ignore", ResourceWarning) | |
| 149 | |
| 3 | 150 DropOrthanc(_LOCAL) |
| 151 DropOrthanc(_REMOTE) | |
| 174 | 152 UninstallLuaCallbacks(_REMOTE) |
| 45 | 153 #print "In test", self._testMethodName |
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154 |
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155 def AssertSameImages(self, truth, url): |
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156 im = GetImage(_REMOTE, url) |
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157 self.assertTrue(CompareLists(truth, im.getdata())) |
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158 |
| 3 | 159 |
| 160 def test_system(self): | |
| 177 | 161 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 162 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 163 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 164 | |
| 165 systemInfo = DoGet(_REMOTE, '/system') | |
| 166 if systemInfo["Version"] == "mainline": | |
| 167 print "Skipping version checks since you're currently in mainline" | |
| 168 return | |
| 169 | |
| 173 | 170 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 171 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 172 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 173 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 174 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 175 |
| 176 def test_upload(self): | |
| 173 | 177 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 178 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 179 | |
| 180 sizeDummyCT = 2472 | |
| 181 sizeOverwrite = 2476 | |
| 182 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 183 | |
| 3 | 184 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 185 self.assertEqual(instance, u['ID']) |
| 3 | 186 self.assertEqual('Success', u['Status']) |
| 173 | 187 |
| 183 | 188 if True: |
| 189 # New test for Orthanc 1.4.3 | |
| 190 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 191 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 192 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 193 | |
| 173 | 194 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 195 s = sizeDummyCT + j | |
| 196 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 197 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 198 | |
| 3 | 199 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 200 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 201 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 202 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 203 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 204 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 205 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 206 | |
| 207 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 208 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 209 self.assertEqual('KNIX', i['PatientName']) |
| 210 | |
| 211 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 212 # Overwriting | |
| 213 self.assertEqual('Success', u['Status']) | |
| 214 else: | |
| 215 self.assertEqual('AlreadyStored', u['Status']) | |
| 216 | |
| 217 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 218 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 219 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 220 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 221 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 222 | |
| 223 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 224 # Overwriting | |
| 225 self.assertEqual('Success', u['Status']) | |
| 226 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 227 s2 = sizeOverwrite + j2 | |
| 228 self.assertNotEqual(s, s2) | |
| 229 self.assertNotEqual(j, j2) | |
| 230 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 231 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 232 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 233 self.assertEqual('ANOTHER', i['PatientName']) | |
| 234 else: | |
| 235 self.assertEqual('AlreadyStored', u['Status']) | |
| 236 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 237 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 238 |
| 5 | 239 def test_upload_2(self): |
| 3 | 240 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 241 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 242 self.assertEqual(i, instance['ID']) | |
| 243 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 244 instance['MainDicomTags']['SOPInstanceUID']) | |
| 245 | |
| 246 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 247 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 248 series['MainDicomTags']['SeriesInstanceUID']) | |
| 249 | |
| 250 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 251 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 252 study['MainDicomTags']['StudyInstanceUID']) | |
| 253 | |
| 254 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 255 self.assertEqual('ozp00SjY2xG', | |
| 256 patient['MainDicomTags']['PatientID']) | |
| 257 | |
| 258 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 259 self.assertEqual(2472, len(dicom)) | |
| 260 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 261 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 262 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 263 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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264 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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265 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 266 |
| 267 | |
| 5 | 268 def test_images(self): |
| 269 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 270 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 271 |
| 5 | 272 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 273 self.assertEqual("L", im.mode) | |
| 274 self.assertEqual(512, im.size[0]) | |
| 275 self.assertEqual(358, im.size[1]) | |
| 276 | |
| 277 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 278 self.assertEqual("L", im.mode) | |
| 279 self.assertEqual(512, im.size[0]) | |
| 280 self.assertEqual(358, im.size[1]) | |
| 281 | |
| 282 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 283 self.assertEqual(512, im.size[0]) | |
| 284 self.assertEqual(358, im.size[1]) | |
| 285 | |
| 286 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 287 self.assertEqual("L", im.mode) | |
| 288 self.assertEqual(512, im.size[0]) | |
| 289 self.assertEqual(358, im.size[1]) | |
| 290 | |
| 291 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 292 self.assertEqual("L", im.mode) | |
| 293 self.assertEqual(512, im.size[0]) | |
| 294 self.assertEqual(358, im.size[1]) | |
| 295 | |
| 296 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 297 self.assertEqual(512, im.size[0]) | |
| 298 self.assertEqual(358, im.size[1]) | |
| 64 | 299 |
| 300 # This is Little Endian Explicit | |
| 301 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 302 | |
| 6 | 303 |
| 304 def test_hierarchy(self): | |
| 305 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 306 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 307 UploadFolder(_REMOTE, 'Knee/T1') | |
| 308 UploadFolder(_REMOTE, 'Knee/T2') | |
| 309 | |
| 310 p = DoGet(_REMOTE, '/patients') | |
| 311 s = DoGet(_REMOTE, '/studies') | |
| 312 t = DoGet(_REMOTE, '/series') | |
| 313 self.assertEqual(2, len(p)) | |
| 314 self.assertEqual(2, len(s)) | |
| 315 self.assertEqual(4, len(t)) | |
| 316 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 317 | |
| 318 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 319 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 320 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 321 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 322 | |
| 323 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 324 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 325 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 326 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 327 | |
| 328 self.assertTrue(brainixPatient in p) | |
| 329 self.assertTrue(kneePatient in p) | |
| 330 self.assertTrue(brainixStudy in s) | |
| 331 self.assertTrue(kneeStudy in s) | |
| 332 self.assertTrue(brainixEpi in t) | |
| 333 self.assertTrue(brainixFlair in t) | |
| 334 self.assertTrue(kneeT1 in t) | |
| 335 self.assertTrue(kneeT2 in t) | |
| 336 | |
| 337 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 338 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 339 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 340 | |
| 341 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 342 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 343 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 344 | |
| 345 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 346 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 347 | |
| 348 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 349 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 350 | |
| 351 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 352 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 353 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 354 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 355 | |
| 356 for patient in p: | |
| 357 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 358 self.assertEqual(patient, study['ParentPatient']) | |
| 359 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 360 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 211 | 361 self.assertEqual('Unknown', series['Status']) |
| 6 | 362 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): |
| 363 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 364 | |
| 365 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 366 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 367 | |
| 368 | |
| 369 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 370 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 371 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 372 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 373 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 374 self.assertEqual(None, r) | |
| 375 | |
| 376 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 377 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 378 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 379 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 380 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 381 self.assertEqual('Study', r['Type']) | |
| 382 self.assertEqual(kneeStudy, r['ID']) | |
| 383 | |
| 384 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 385 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 386 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 387 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 388 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 389 self.assertEqual('Series', r['Type']) | |
| 390 self.assertEqual(kneeT1, r['ID']) | |
| 391 | |
| 392 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 393 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 394 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 395 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 396 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 397 self.assertEqual(None, r) | |
| 398 | |
| 399 DropOrthanc(_REMOTE) | |
| 400 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 401 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 402 |
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403 def test_delete_cascade(self): |
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404 # make sure deleting the last instance of a study deletes the series, study and patient |
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405 |
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406 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) # make sure orthanc is empty when starting the test |
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407 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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408 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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409 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) |
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410 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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411 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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412 |
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413 DoDelete(_REMOTE, '/instances/%s' % a) |
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414 |
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415 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
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416 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) |
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417 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) |
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418 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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419 |
| 7 | 420 |
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421 def test_multiframe(self): |
| 7 | 422 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 423 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 424 | |
| 425 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 426 self.assertEqual("L", im.mode) | |
| 427 self.assertEqual(512, im.size[0]) | |
| 428 self.assertEqual(512, im.size[1]) | |
| 429 | |
| 430 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 431 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 432 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 433 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 434 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 435 | |
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436 |
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437 def test_changes(self): |
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438 # Check emptiness |
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439 c = DoGet(_REMOTE, '/changes') |
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440 self.assertEqual(0, len(c['Changes'])) |
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441 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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442 self.assertTrue(c['Done']) |
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443 c = DoGet(_REMOTE, '/changes?last') |
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444 self.assertEqual(0, len(c['Changes'])) |
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445 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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446 self.assertTrue(c['Done']) |
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447 |
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448 # Add 1 instance |
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449 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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450 c = DoGet(_REMOTE, '/changes') |
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451 begin = c['Last'] |
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452 self.assertEqual(4, len(c['Changes'])) |
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453 self.assertTrue(c['Done']) |
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454 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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455 |
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456 c = DoGet(_REMOTE, '/changes?last') |
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457 self.assertEqual(1, len(c['Changes'])) |
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458 self.assertEqual(begin, c['Last']) |
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459 self.assertTrue(c['Done']) |
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460 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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461 self.assertEqual(1, len(c['Changes'])) |
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462 self.assertEqual(begin, c['Last']) |
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463 self.assertTrue(c['Done']) |
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464 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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465 self.assertEqual(1, len(c['Changes'])) |
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466 self.assertEqual(begin - 1, c['Last']) |
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467 self.assertFalse(c['Done']) |
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468 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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469 self.assertEqual(1, len(c['Changes'])) |
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470 self.assertEqual(begin - 2, c['Last']) |
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471 self.assertFalse(c['Done']) |
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|
472 |
|
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473 UploadFolder(_REMOTE, 'Knee/T1') |
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474 UploadFolder(_REMOTE, 'Knee/T2') |
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|
475 since = begin |
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476 countPatients = 0 |
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477 countStudies = 0 |
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478 countSeries = 0 |
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479 countInstances = 0 |
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480 completed = 0 |
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481 while True: |
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482 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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483 since = c['Last'] |
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484 for i in c['Changes']: |
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485 if i['ResourceType'] == 'Instance': |
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486 countInstances += 1 |
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487 if i['ResourceType'] == 'Patient': |
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488 countPatients += 1 |
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489 if i['ResourceType'] == 'Study': |
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490 countStudies += 1 |
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491 if i['ResourceType'] == 'Series': |
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492 countSeries += 1 |
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493 if i['ChangeType'] == 'NewInstance': |
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494 countInstances += 1 |
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495 if i['ChangeType'] == 'NewPatient': |
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496 countPatients += 1 |
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497 if i['ChangeType'] == 'NewStudy': |
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498 countStudies += 1 |
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499 if i['ChangeType'] == 'NewSeries': |
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500 countSeries += 1 |
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501 if i['ChangeType'] == 'CompletedSeries': |
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502 completed += 1 |
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503 self.assertTrue('ID' in i) |
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504 self.assertTrue('Path' in i) |
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505 self.assertTrue('Seq' in i) |
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506 if c['Done']: |
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changeset
|
507 break |
|
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changeset
|
508 |
|
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509 self.assertEqual(2 * 50, countInstances) |
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510 self.assertEqual(2 * 1, countPatients) |
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511 self.assertEqual(2 * 1, countStudies) |
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512 self.assertEqual(2 * 2, countSeries) |
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513 self.assertEqual(0, completed) |
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|
514 |
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|
515 |
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|
516 def test_archive(self): |
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517 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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518 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 519 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 520 | |
| 521 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
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522 self.assertEqual(2, len(z.namelist())) |
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|
523 |
|
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|
524 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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525 self.assertEqual(2, len(z.namelist())) |
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|
526 |
|
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|
527 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
|
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528 self.assertEqual(1, len(z.namelist())) |
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|
529 |
|
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|
530 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 531 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 532 | |
| 533 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
8
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|
534 self.assertEqual(2, len(z.namelist())) |
| 192 | 535 |
| 536 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 537 'Resources' : [ brainix, knee ] | |
| 538 }) | |
| 539 self.assertEqual(3, len(z.namelist())) | |
| 540 | |
|
8
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changeset
|
541 |
|
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changeset
|
542 def test_media_archive(self): |
|
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changeset
|
543 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
544 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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changeset
|
545 |
|
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diff
changeset
|
546 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
|
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|
547 self.assertEqual(3, len(z.namelist())) |
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548 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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|
549 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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550 self.assertTrue('DICOMDIR' in z.namelist()) |
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diff
changeset
|
551 |
|
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diff
changeset
|
552 try: |
|
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changeset
|
553 os.remove('/tmp/DICOMDIR') |
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changeset
|
554 except: |
|
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
555 # The file does not exist |
|
f8d781d1d267
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diff
changeset
|
556 pass |
|
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diff
changeset
|
557 |
|
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changeset
|
558 z.extract('DICOMDIR', '/tmp') |
| 45 | 559 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
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|
560 stderr = subprocess.STDOUT).split('\n') |
|
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|
561 self.assertEqual(3, len(a)) |
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562 self.assertTrue(a[0].startswith('Warning')) |
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563 self.assertEqual('BasicDirectory', a[1]) |
|
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|
564 self.assertEqual('', a[2]) |
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changeset
|
565 |
| 45 | 566 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
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|
567 stderr = subprocess.STDOUT).split('\n') |
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|
568 self.assertEqual(1, len(a)) |
|
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diff
changeset
|
569 self.assertEqual('', a[0]) |
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changeset
|
570 |
| 45 | 571 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
8
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changeset
|
572 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
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parents:
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changeset
|
573 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
|
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parents:
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diff
changeset
|
574 |
|
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7
diff
changeset
|
575 os.remove('/tmp/DICOMDIR') |
| 10 | 576 |
| 577 | |
| 578 def test_protection(self): | |
| 579 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 580 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 581 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 582 a = DoGet(_REMOTE, '/patients')[0] | |
| 583 b = DoGet(_REMOTE, '/patients')[1] | |
| 584 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 585 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 586 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 587 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 588 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 589 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 590 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 591 | |
| 592 | |
| 12 | 593 def test_raw_tags(self): |
| 10 | 594 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 595 | |
| 596 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 597 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 598 | |
| 599 s = '/instances/%s/content/' % i | |
| 600 | |
| 601 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 602 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 603 | |
| 604 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 605 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 606 | |
| 607 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 608 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 609 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 610 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 611 | |
| 612 for i in DoGet(_REMOTE, '/instances'): | |
| 613 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 614 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 615 | |
| 616 | |
| 617 def test_raw_tags_mdn(self): | |
| 618 # Bug reported by Cyril Paulus | |
| 619 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 620 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 621 | |
| 622 | |
| 623 def test_modify_instance(self): | |
| 624 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 625 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 626 json.dumps({ | |
| 627 "Replace" : { | |
| 628 "PatientName" : "hello", | |
| 629 #"PatientID" : "world" | |
| 630 }, | |
| 631 "Remove" : [ "StationName" ], | |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
632 "RemovePrivateTags" : True |
| 10 | 633 }), |
| 634 'application/json') | |
| 635 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 636 | |
| 637 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 638 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 639 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 640 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 641 | |
| 642 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 643 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 644 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 645 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 646 | |
| 647 | |
| 648 def test_modify_series(self): | |
| 649 # Upload 4 images from the same series | |
| 650 for i in range(4): | |
| 651 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 652 | |
| 653 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 654 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 655 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 656 'application/json')['ID'] | |
| 657 | |
| 658 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 659 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 660 self.assertEqual(4, len(instances)) | |
| 661 for i in instances: | |
| 662 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 663 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 664 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 665 | |
| 666 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 667 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 668 | |
| 669 | |
| 670 def test_modify_study(self): | |
| 671 # Upload 4 images from the 2 series of the same study | |
| 672 for i in range(4): | |
| 673 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 674 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 675 | |
| 676 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 677 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 678 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 679 'application/json')['ID'] | |
| 680 | |
| 681 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 682 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 683 self.assertEqual(2, len(series)) | |
| 684 for s in series: | |
| 685 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 686 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 687 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 688 | |
| 689 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 690 for i in instances: | |
| 691 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 692 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 693 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 694 | |
| 695 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 696 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 697 | |
| 698 | |
| 699 def test_anonymize_series(self): | |
| 700 # Upload 4 images from the same series | |
| 701 for i in range(4): | |
| 702 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 703 | |
| 704 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 705 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 706 '{}', | |
| 707 'application/json')['ID'] | |
| 708 | |
| 709 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 710 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 711 self.assertEqual(4, len(instances)) | |
| 712 for i in instances: | |
| 713 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 714 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 715 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 716 | |
| 717 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 718 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 719 | |
| 720 | |
| 721 def test_anonymize_study(self): | |
| 722 # Upload 4 images from the 2 series of the same study | |
| 723 for i in range(4): | |
| 724 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 725 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 726 | |
| 727 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 728 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 729 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 730 'application/json')['ID'] | |
| 731 | |
| 732 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 733 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 734 self.assertEqual(2, len(series)) | |
| 735 for s in series: | |
| 736 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 737 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 738 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 739 | |
| 740 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 741 for i in instances: | |
| 742 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 743 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 744 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 745 | |
| 746 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 747 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 748 |
| 749 | |
| 750 | |
| 751 def test_storescu(self): | |
| 752 # Check emptiness | |
| 753 e = DoGet(_REMOTE, '/exports') | |
| 754 self.assertEqual(0, len(e['Exports'])) | |
| 755 self.assertEqual(0, e['Last']) | |
| 756 self.assertTrue(e['Done']) | |
| 757 e = DoGet(_REMOTE, '/exports?last') | |
| 758 self.assertEqual(0, len(e['Exports'])) | |
| 759 self.assertEqual(0, e['Last']) | |
| 760 self.assertTrue(e['Done']) | |
| 761 | |
| 762 # Add 1 instance | |
| 763 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 764 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 765 | |
| 766 # Export the instance | |
| 767 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 768 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 769 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 770 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 771 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 772 | |
| 773 e = DoGet(_REMOTE, '/exports') | |
| 774 self.assertEqual(1, len(e['Exports'])) | |
| 775 self.assertTrue(e['Done']) | |
| 776 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 777 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 778 self.assertEqual(1, len(e['Exports'])) | |
| 779 self.assertTrue(e['Done']) | |
| 780 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 781 e = DoGet(_REMOTE, '/exports?last') | |
| 782 self.assertEqual(1, len(e['Exports'])) | |
| 783 self.assertTrue(e['Done']) | |
| 784 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 785 seqInstance = e['Last'] | |
| 786 | |
| 787 # Export the series | |
| 788 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 789 | |
| 790 e = DoGet(_REMOTE, '/exports') | |
| 791 self.assertEqual(2, len(e['Exports'])) | |
| 792 self.assertTrue(e['Done']) | |
| 793 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 794 seqSeries = e['Last'] | |
| 795 self.assertNotEqual(seqInstance, seqSeries) | |
| 796 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 797 self.assertEqual(1, len(e['Exports'])) | |
| 798 self.assertFalse(e['Done']) | |
| 799 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 800 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 801 self.assertEqual(1, len(e['Exports'])) | |
| 802 self.assertTrue(e['Done']) | |
| 803 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 804 e = DoGet(_REMOTE, '/exports?last') | |
| 805 self.assertEqual(1, len(e['Exports'])) | |
| 806 self.assertTrue(e['Done']) | |
| 807 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 808 | |
| 809 # Export the study | |
| 810 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 811 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 812 | |
| 813 # Export the patient | |
| 814 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 815 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 816 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 817 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 818 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 819 | |
| 820 e = DoGet(_REMOTE, '/exports') | |
| 821 self.assertEqual(4, len(e['Exports'])) | |
| 822 self.assertTrue(e['Done']) | |
| 823 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 824 seqPatient = e['Last'] | |
| 825 self.assertNotEqual(seqInstance, seqSeries) | |
| 826 self.assertNotEqual(seqSeries, seqStudy) | |
| 827 self.assertNotEqual(seqStudy, seqPatient) | |
| 828 self.assertTrue(seqInstance < seqSeries) | |
| 829 self.assertTrue(seqSeries < seqStudy) | |
| 830 self.assertTrue(seqStudy < seqPatient) | |
| 831 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 832 self.assertEqual(1, len(e['Exports'])) | |
| 833 self.assertFalse(e['Done']) | |
| 834 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 835 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 836 self.assertEqual(1, len(e['Exports'])) | |
| 837 self.assertFalse(e['Done']) | |
| 838 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 839 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 840 self.assertEqual(1, len(e['Exports'])) | |
| 841 self.assertFalse(e['Done']) | |
| 842 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 843 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 844 self.assertEqual(1, len(e['Exports'])) | |
| 845 self.assertTrue(e['Done']) | |
| 846 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 847 e = DoGet(_REMOTE, '/exports?last') | |
| 848 self.assertEqual(1, len(e['Exports'])) | |
| 849 self.assertTrue(e['Done']) | |
| 850 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 851 | |
| 852 | |
| 853 # Check the content of the logged information | |
| 854 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 855 | |
| 856 if 'PatientID' in e[0]: | |
| 857 # Since Orthanc 0.8.6 | |
| 858 patient = 'PatientID' | |
| 859 study = 'StudyInstanceUID' | |
| 860 series = 'SeriesInstanceUID' | |
| 861 instance = 'SOPInstanceUID' | |
| 862 else: | |
| 863 # Up to Orthanc 0.8.5 | |
| 864 patient = 'PatientId' | |
| 865 study = 'StudyInstanceUid' | |
| 866 series = 'SeriesInstanceUid' | |
| 867 instance = 'SopInstanceUid' | |
| 868 | |
| 869 for k in range(4): | |
| 870 self.assertTrue('Date' in e[k]) | |
| 871 self.assertTrue('Seq' in e[k]) | |
| 872 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 873 | |
| 874 self.assertEqual(10, len(e[0])) | |
| 875 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 876 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 877 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 878 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 879 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 880 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 881 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 882 | |
| 883 self.assertEqual(9, len(e[1])) | |
| 884 self.assertEqual('Series', e[1]['ResourceType']) | |
| 885 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 886 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 887 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 888 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 889 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 890 | |
| 891 self.assertEqual(8, len(e[2])) | |
| 892 self.assertEqual('Study', e[2]['ResourceType']) | |
| 893 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 894 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 895 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 896 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 897 | |
| 898 self.assertEqual(7, len(e[3])) | |
| 899 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 900 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 901 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 902 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 903 | |
| 904 DropOrthanc(_REMOTE) | |
| 905 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 906 | |
| 907 | |
| 908 def test_store_peer(self): | |
| 909 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 910 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 911 | |
| 912 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 913 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 914 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 915 | |
| 916 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 917 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 918 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 919 | |
| 920 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 921 | |
| 922 DropOrthanc(_REMOTE) | |
| 923 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 924 | |
| 925 | |
| 926 def test_bulk_storescu(self): | |
| 927 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 928 | |
| 929 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 930 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 931 | |
| 932 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 933 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 934 | |
| 935 DropOrthanc(_LOCAL) | |
| 936 | |
| 937 # Send using patient's UUID | |
| 938 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 939 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 940 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 941 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 942 | |
| 943 | |
| 944 def test_color(self): | |
| 945 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 946 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 947 self.assertEqual("RGB", im.mode) | |
| 948 self.assertEqual(41, im.size[0]) | |
| 949 self.assertEqual(41, im.size[1]) | |
| 950 | |
| 951 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 952 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 953 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 954 | |
| 955 | |
| 12 | 956 def test_faking_ruby_put(self): |
| 957 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 958 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 959 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 960 a = DoGet(_REMOTE, '/patients')[0] | |
| 961 b = DoGet(_REMOTE, '/patients')[1] | |
| 962 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 963 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 964 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 965 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 966 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 967 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 968 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 969 | |
| 970 | |
| 971 def test_faking_ruby_delete(self): | |
| 972 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 973 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 974 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 975 a = DoGet(_REMOTE, '/patients')[0] | |
| 976 b = DoGet(_REMOTE, '/patients')[1] | |
| 977 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 978 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 979 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 980 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 981 | |
| 982 | |
| 983 def test_faking_google_put(self): | |
| 984 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 985 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 986 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 987 a = DoGet(_REMOTE, '/patients')[0] | |
| 988 b = DoGet(_REMOTE, '/patients')[1] | |
| 989 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 990 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 991 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 992 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 993 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 994 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 995 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 996 | |
| 997 | |
| 998 def test_faking_google_delete(self): | |
| 999 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1000 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1001 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1002 a = DoGet(_REMOTE, '/patients')[0] | |
| 1003 b = DoGet(_REMOTE, '/patients')[1] | |
| 1004 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1005 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1006 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 1007 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1008 | |
| 1009 | |
| 1010 def test_lua(self): | |
| 1011 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 1012 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 1013 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 1014 | |
| 1015 | |
| 1016 def test_metadata(self): | |
| 1017 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 1018 p = DoGet(_REMOTE, '/patients')[0] | |
| 1019 i = DoGet(_REMOTE, '/instances')[0] | |
| 1020 | |
| 1021 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1022 self.assertEqual(1, len(m)) | |
| 1023 self.assertEqual('LastUpdate', m[0]) | |
| 1024 | |
| 1025 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 145 | 1026 self.assertEqual(8, len(m)) |
| 12 | 1027 self.assertTrue('IndexInSeries' in m) |
| 1028 self.assertTrue('ReceptionDate' in m) | |
| 1029 self.assertTrue('RemoteAET' in m) | |
|
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1030 self.assertTrue('Origin' in m) |
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1031 self.assertTrue('TransferSyntax' in m) |
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1032 self.assertTrue('SopClassUid' in m) |
| 145 | 1033 self.assertTrue('RemoteIP' in m) |
| 1034 self.assertTrue('HttpUsername' in m) | |
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1035 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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1036 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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1037 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1038 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1039 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1040 |
| 1041 # Play with custom metadata | |
| 1042 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1043 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1044 self.assertEqual(2, len(m)) | |
| 1045 self.assertTrue('LastUpdate' in m) | |
| 1046 self.assertTrue('5555' in m) | |
| 1047 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1048 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1049 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1050 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1051 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1052 self.assertEqual(1, len(m)) | |
| 1053 self.assertTrue('LastUpdate' in m) | |
| 13 | 1054 |
| 1055 | |
| 1056 def test_statistics(self): | |
| 1057 # Upload 16 instances | |
| 1058 for i in range(4): | |
| 1059 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1060 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1061 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1062 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1063 | |
| 1064 s = DoGet(_REMOTE, '/statistics') | |
| 1065 self.assertEqual(16, s['CountInstances']) | |
| 1066 self.assertEqual(2, s['CountPatients']) | |
| 1067 self.assertEqual(2, s['CountStudies']) | |
| 1068 self.assertEqual(4, s['CountSeries']) | |
| 1069 d = int(s['TotalUncompressedSize']) | |
| 1070 | |
| 1071 e = 0 | |
| 1072 for patient in DoGet(_REMOTE, '/patients'): | |
| 1073 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1074 self.assertEqual(8, s['CountInstances']) | |
| 1075 self.assertEqual(1, s['CountStudies']) | |
| 1076 self.assertEqual(2, s['CountSeries']) | |
| 1077 e += int(s['UncompressedSize']) | |
| 1078 | |
| 1079 for study in DoGet(_REMOTE, '/studies'): | |
| 1080 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1081 self.assertEqual(8, s['CountInstances']) | |
| 1082 self.assertEqual(2, s['CountSeries']) | |
| 1083 e += int(s['UncompressedSize']) | |
| 1084 | |
| 1085 for series in DoGet(_REMOTE, '/series'): | |
| 1086 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1087 self.assertEqual(4, s['CountInstances']) | |
| 1088 e += int(s['UncompressedSize']) | |
| 1089 | |
| 1090 self.assertEqual(3 * d, e) | |
| 1091 | |
| 1092 | |
| 1093 def test_custom_attachment(self): | |
| 1094 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1095 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1096 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1097 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1098 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1099 | |
| 1100 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1101 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1102 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1103 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1104 | |
| 1105 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1106 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1107 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1108 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1109 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1110 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1111 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1112 | |
| 1113 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1114 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1115 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1116 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1117 size + | |
| 1118 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1119 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1120 | |
| 1121 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1122 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1123 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1124 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1125 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1126 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1127 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1128 | |
| 1129 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1130 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1131 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1132 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1133 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1134 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1135 | |
| 1136 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1137 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1138 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1139 | |
| 1140 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1141 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1142 | |
| 1143 | |
| 1144 def test_incoming_storescu(self): | |
| 1145 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1146 subprocess.check_call([ FindExecutable('storescu'), |
|
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1147 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1148 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1149 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1150 | |
|
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1151 i = DoGet(_REMOTE, '/instances') |
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1152 self.assertEqual(1, len(i)) |
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1153 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1154 self.assertEqual(8, len(m)) |
|
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1155 self.assertTrue('IndexInSeries' in m) |
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1156 self.assertTrue('ReceptionDate' in m) |
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1157 self.assertTrue('RemoteAET' in m) |
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1158 self.assertTrue('Origin' in m) |
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1159 self.assertTrue('TransferSyntax' in m) |
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1160 self.assertTrue('SopClassUid' in m) |
| 145 | 1161 self.assertTrue('RemoteIP' in m) |
| 1162 self.assertTrue('CalledAET' in m) | |
|
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1163 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1164 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1165 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1166 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1167 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1168 |
| 13 | 1169 |
| 1170 def test_incoming_findscu(self): | |
| 1171 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1172 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1173 | |
| 1174 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1175 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1176 self.assertEqual(2, len(patientNames)) | |
| 1177 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1178 self.assertTrue('Anonymized' in patientNames) | |
| 1179 | |
| 1180 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1181 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1182 self.assertEqual(2, len(series)) | |
| 1183 self.assertTrue('20070208' in series) | |
| 1184 self.assertTrue('19980312' in series) | |
| 1185 | |
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1186 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1187 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1188 self.assertEqual(1, len(series)) |
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1189 self.assertTrue('19980312' in series) |
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1190 |
| 13 | 1191 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1192 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1193 self.assertEqual(1, len(series)) | |
| 1194 | |
| 1195 # Test the "CaseSentitivePN" flag (false by default) | |
| 1196 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1197 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1198 self.assertEqual(1, len(series)) | |
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1199 |
| 70 | 1200 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1201 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1202 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1203 self.assertEqual(2, len(studies)) | |
| 1204 self.assertTrue('20070208' in studies) | |
| 1205 self.assertTrue('19980312' in studies) | |
| 1206 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1207 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1208 self.assertEqual(1, len(studies)) | |
| 1209 self.assertTrue('19980312' in studies) | |
| 1210 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1211 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1212 self.assertEqual(1, len(studies)) | |
| 1213 self.assertTrue('19980312' in studies) | |
| 13 | 1214 |
| 1215 | |
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1216 def test_incoming_findscu_2(self): |
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1217 # This test fails if "LookupMode_DatabaseOnly" is used |
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1218 # (sequences are not available in this mode, and only main |
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1219 # DICOM tags are returned) |
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1220 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1221 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1222 |
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1223 # Test returning sequence values (only since Orthanc 0.9.5) |
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1224 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1225 sequences = re.findall('\(0008,2112\)', i) |
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1226 self.assertEqual(1, len(sequences)) |
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1227 |
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1228 # Test returning a non-main DICOM tag, |
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1229 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1230 # "MEDPC" in "ColorTestImageJ.dcm" |
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1231 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1232 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1233 self.assertEqual(1, len(tags)) |
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1234 |
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1235 |
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1236 def test_incoming_findscu_3(self): |
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1237 # This test fails if "LookupMode_DatabaseOnly" or |
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1238 # "LookupMode_DiskOnAnswer" is used, as |
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1239 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1240 # tag, as thus a constraint cannot be applied to it |
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1241 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1242 |
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1243 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1244 sequences = re.findall('\(0018,1010\)', i) |
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1245 self.assertEqual(1, len(sequences)) |
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1246 |
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1247 |
| 13 | 1248 def test_incoming_movescu(self): |
| 1249 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1250 |
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1251 # No matching patient, so no job is created |
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1252 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1253 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1254 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1255 |
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1256 # 1 Matching patient, track the job |
| 138 | 1257 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1258 '--patient', | |
| 1259 '-k', '0008,0052=PATIENT', | |
| 1260 '-k', 'PatientID=12345678' | |
| 1261 ]))) | |
| 13 | 1262 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1263 | |
| 1264 | |
| 1265 def test_findscu(self): | |
| 1266 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1267 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1268 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1269 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1270 | |
| 1271 # Test the "find-patient" level | |
| 1272 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1273 self.assertEqual(1, len(p)) | |
| 1274 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1275 | |
| 1276 # Test wildcards constraints. The "LO" value representation | |
| 1277 # for PatientID is always case-sensitive, but the "PN" for | |
| 1278 # PatientName might depend on the implementation: | |
| 1279 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1280 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1281 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1282 self.assertEqual(1, len(p)) | |
| 1283 | |
| 1284 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1285 self.assertEqual(1, len(p)) | |
| 1286 | |
| 1287 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1288 self.assertEqual(1, len(p)) | |
| 1289 | |
| 1290 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1291 self.assertEqual(1, len(p)) | |
| 1292 | |
| 1293 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1294 self.assertEqual(0, len(p)) | |
| 1295 | |
| 1296 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1297 self.assertEqual(0, len(p)) | |
| 1298 | |
| 1299 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1300 self.assertEqual(0, len(p)) | |
| 1301 | |
| 1302 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1303 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1304 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1305 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1306 | |
| 1307 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1308 self.assertEqual(2, len(p)) | |
| 1309 | |
| 1310 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1311 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1312 self.assertEqual(1, len(s)) | |
| 1313 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1314 | |
| 1315 # Test range searches | |
| 1316 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1317 'StudyDate' : '-20070101' }) | |
| 1318 self.assertEqual(0, len(t)) | |
| 1319 | |
| 1320 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1321 'StudyDate' : '20090101-' }) | |
| 1322 self.assertEqual(0, len(t)) | |
| 1323 | |
| 1324 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1325 'StudyDate' : '20070101-' }) | |
| 1326 self.assertEqual(1, len(t)) | |
| 1327 | |
| 1328 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1329 'StudyDate' : '-20090101' }) | |
| 1330 self.assertEqual(1, len(t)) | |
| 1331 | |
| 1332 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1333 'StudyDate' : '20070207-20070207' }) | |
| 1334 self.assertEqual(0, len(t)) | |
| 1335 | |
| 1336 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1337 'StudyDate' : '20070208-20070208' }) | |
| 1338 self.assertEqual(1, len(t)) | |
| 1339 | |
| 1340 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1341 'StudyDate' : '20070209-20070209' }) | |
| 1342 self.assertEqual(0, len(t)) | |
| 1343 | |
| 1344 # Test the ModalitiesInStudy tag | |
| 1345 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1346 'PatientID' : 'B9uTHKOZ', | |
| 1347 'ModalitiesInStudy' : 'US' }) | |
| 1348 self.assertEqual(0, len(t)) | |
| 1349 | |
| 1350 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1351 'PatientID' : 'B9uTHKOZ', | |
| 1352 'ModalitiesInStudy' : 'CT' }) | |
| 1353 self.assertEqual(1, len(t)) | |
| 1354 | |
| 1355 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1356 'PatientID' : 'B9uTHKOZ', | |
| 1357 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1358 self.assertEqual(1, len(t)) | |
| 1359 | |
| 1360 # Test the "find-series" level | |
| 1361 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1362 'PatientID' : 'B9uTHKOZ', | |
| 1363 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1364 self.assertEqual(1, len(t)) | |
| 1365 | |
| 1366 # Test "\" separator | |
| 1367 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1368 'PatientID' : 'B9uTHKOZ', | |
| 1369 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1370 'Modality' : 'MR\\CT\\US' }) | |
| 1371 self.assertEqual(1, len(t)) | |
| 1372 | |
| 1373 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1374 'PatientID' : 'B9uTHKOZ', | |
| 1375 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1376 'Modality' : 'MR\\US' }) | |
| 1377 self.assertEqual(0, len(t)) | |
| 1378 | |
| 1379 | |
| 1380 def test_update_modalities(self): | |
| 1381 try: | |
| 1382 DoDelete(_REMOTE, '/modalities/toto') | |
| 1383 except: | |
| 1384 pass | |
| 1385 try: | |
| 1386 DoDelete(_REMOTE, '/modalities/tata') | |
| 1387 except: | |
| 1388 pass | |
| 1389 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1390 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1391 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1392 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1393 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1394 DoDelete(_REMOTE, '/modalities/tata') |
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1395 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1396 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1397 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1398 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1399 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1400 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1401 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1402 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1403 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1404 DoDelete(_REMOTE, '/modalities/toto') | |
| 1405 DoDelete(_REMOTE, '/modalities/tata') | |
| 1406 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1407 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1408 | |
| 1409 | |
| 1410 def test_update_peers(self): | |
| 1411 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1412 try: | |
| 1413 DoDelete(_REMOTE, '/peers/toto') | |
| 1414 except: | |
| 1415 pass | |
| 1416 try: | |
| 1417 DoDelete(_REMOTE, '/peers/tata') | |
| 1418 except: | |
| 1419 pass | |
| 1420 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1421 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 214 | 1422 DoPut(_REMOTE, '/peers/tata', { 'Url': 'http://localhost:8042/', |
| 1423 'Username': 'user', | |
| 1424 'Password' : 'pass', | |
| 1425 'RemoteSelf' : 'self' }) | |
| 128 | 1426 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1427 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1428 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1429 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 214 | 1430 |
| 1431 if IsOrthancVersionAbove(_REMOTE, 1, 5, 4): | |
| 1432 self.assertEqual(None, peersReadback['tata']['Password']) # make sure no sensitive data is included | |
| 1433 self.assertFalse(peersReadback['tata']['Pkcs11']) # make sure no sensitive data is included | |
| 1434 self.assertEqual('self', peersReadback['tata']['RemoteSelf']) | |
| 1435 else: | |
| 1436 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1437 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1438 self.assertFalse('RemoteSelf' in peersReadback['tata']) | |
| 1439 | |
| 128 | 1440 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included |
| 1441 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1442 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 214 | 1443 |
| 13 | 1444 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1445 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1446 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1447 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1448 DoDelete(_REMOTE, '/peers/toto') | |
| 1449 DoDelete(_REMOTE, '/peers/tata') | |
| 1450 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1451 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1452 | |
| 1453 | |
| 1454 def test_mesterhazy_modification(self): | |
| 1455 # When I modify a series ( eg. curl | |
| 1456 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1457 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1458 # series is added to a new Study, instead of the existing | |
| 1459 # Study. Fixed in Orthanc 0.7.5 | |
| 1460 | |
| 1461 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1462 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1463 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1464 | |
| 1465 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1466 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1467 | |
| 1468 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1469 | |
| 1470 | |
| 1471 def test_create(self): | |
| 1472 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1473 json.dumps({ | |
| 1474 'PatientName' : 'Jodogne', | |
| 1475 'Modality' : 'CT', | |
| 58 | 1476 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1477 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1478 })) | |
| 1479 | |
| 1480 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1481 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1482 | |
| 1483 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1484 self.assertEqual((5, 5), png.size) | |
| 1485 | |
| 38 | 1486 j = DoGet(_REMOTE, i['Path']) |
| 1487 self.assertEqual('Instance', j['Type']) | |
| 1488 self.assertEqual(j['ID'], i['ID']) | |
| 1489 | |
| 13 | 1490 |
| 1491 def test_pilates(self): | |
| 1492 # "SCU failed error when accessing orthanc with osirix" by | |
| 1493 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1494 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1495 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1496 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1497 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1498 | |
| 1499 | |
| 1500 def test_shared_tags(self): | |
| 1501 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1502 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1503 p = DoGet(_REMOTE, '/patients')[0] | |
| 1504 | |
| 1505 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1506 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1507 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1508 |
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1509 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1510 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1511 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1512 |
| 13 | 1513 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1514 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1515 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1516 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1517 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1518 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1519 | |
| 1520 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1521 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1522 | |
| 1523 | |
| 1524 def test_modules(self): | |
| 1525 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1526 p = DoGet(_REMOTE, '/patients')[0] | |
| 1527 s = DoGet(_REMOTE, '/studies')[0] | |
| 1528 t = DoGet(_REMOTE, '/series')[0] | |
| 1529 | |
| 1530 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1531 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1532 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1533 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1534 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1535 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1536 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1537 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1538 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1539 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1540 | |
| 1541 | |
| 1542 def test_auto_directory(self): | |
| 1543 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1544 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1545 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1546 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1547 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1548 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1549 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1550 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1551 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1552 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1553 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1554 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1555 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1556 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1557 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1558 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1559 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1560 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1561 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1562 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1563 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1564 |
| 1565 | |
| 1566 def test_echo(self): | |
| 1567 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1568 | |
| 1569 | |
| 1570 def test_xml(self): | |
| 1571 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1572 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1573 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1574 self.assertEqual(len(items), len(json)) | |
| 1575 | |
| 1576 self.assertTrue('dicom-conformance' in json) | |
| 1577 | |
| 1578 ok = False | |
| 1579 for i in items: | |
| 1580 if i.childNodes[0].data == 'dicom-conformance': | |
| 1581 ok = True | |
| 1582 self.assertTrue(ok) | |
| 1583 | |
| 1584 | |
|
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1585 def test_googlecode_issue_16(self): |
| 13 | 1586 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1587 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1588 self.assertEqual('0018,1063', t) | |
| 1589 | |
| 1590 | |
|
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1591 def test_googlecode_issue_22(self): |
| 13 | 1592 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1593 a = [ | |
| 1594 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1595 "c69eee9a51eea3e8611e82e578897254", | |
| 1596 "315666be83e2d0111c77bc0996d84901", | |
| 1597 "3e27aa959d911172c48a1436443c72b1", | |
| 1598 "958642c9e7e9d232d3869faff546058c", | |
| 1599 "5e7ea8e3e4230cae707d143481355c59", | |
| 1600 "eda37f83558d858a596175aed8b2ad47", | |
| 1601 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1602 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1603 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1604 "e2f39e85896fe58876654b94cd0b5013", | |
| 1605 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1606 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1607 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1608 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1609 "806b8b3e300c615099c11a5ec23465aa", | |
| 1610 "7c836aa298ba6eef96434579af631a11", | |
| 1611 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1612 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1613 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1614 "44e6670f127e612a2b4aa60a0d207698", | |
| 1615 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1616 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1617 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1618 ] | |
| 1619 | |
| 1620 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1621 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1622 | |
| 1623 for i in range(len(a)): | |
| 1624 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1625 | |
| 1626 | |
|
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1627 def test_googlecode_issue_19(self): |
|
21
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|
1628 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1629 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1630 | |
| 1631 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
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|
1632 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1633 |
| 1634 | |
|
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|
1635 def test_googlecode_issue_37(self): |
| 13 | 1636 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1637 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1638 | |
| 1639 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1640 'CaseSensitive' : True, | |
| 1641 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1642 self.assertEqual(1, len(a)) | |
| 14 | 1643 |
| 1644 | |
| 1645 def test_rest_find(self): | |
| 1646 # Upload 8 instances | |
| 1647 for i in range(2): | |
| 1648 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1649 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1650 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1651 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1652 | |
| 1653 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1654 'CaseSensitive' : False, | |
|
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1655 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1656 self.assertEqual(1, len(a)) |
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1657 |
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1658 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1659 'CaseSensitive' : False, |
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1660 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1661 self.assertEqual(2, len(a)) |
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1662 |
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1663 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1664 'CaseSensitive' : False, |
| 14 | 1665 'Query' : { 'PatientName' : '*n*' }}) |
| 1666 self.assertEqual(2, len(a)) | |
| 1667 | |
| 1668 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1669 'CaseSensitive' : True, | |
| 1670 'Query' : { 'PatientName' : '*n*' }}) | |
| 1671 self.assertEqual(0, len(a)) | |
| 1672 | |
| 1673 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1674 'Level' : 'Patient', | |
| 1675 'CaseSensitive' : False, | |
| 1676 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1677 self.assertEqual(1, len(a)) | |
| 1678 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1679 | |
| 1680 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1681 'CaseSensitive' : True, | |
| 1682 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1683 self.assertEqual(0, len(a)) | |
| 1684 | |
| 1685 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1686 'CaseSensitive' : True, | |
| 1687 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1688 self.assertEqual(1, len(a)) | |
| 1689 | |
| 1690 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1691 'CaseSensitive' : True, | |
| 1692 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1693 self.assertEqual(2, len(a)) | |
| 1694 | |
| 1695 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1696 'CaseSensitive' : True, | |
| 1697 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1698 self.assertEqual(4, len(a)) | |
| 1699 | |
| 1700 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1701 self.assertEqual(2, len(a)) | |
| 1702 | |
| 1703 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1704 self.assertEqual(2, len(a)) | |
| 1705 | |
| 1706 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1707 self.assertEqual(4, len(a)) | |
| 1708 | |
| 1709 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1710 self.assertEqual(8, len(a)) | |
| 1711 | |
|
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1712 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1713 'Expand' : True, |
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1714 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1715 self.assertEqual(1, len(a)) |
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1716 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1717 |
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1718 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1719 'Expand' : True, |
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1720 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1721 self.assertEqual(2, len(a)) |
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1722 for i in range(2): |
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1723 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1724 |
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1725 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1726 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1727 self.assertEqual(0, len(a)) |
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1728 |
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1729 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1730 'Expand' : True, |
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1731 'Query' : { 'StudyDate' : '-20061201' }}) |
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1732 self.assertEqual(1, len(a)) |
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1733 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1735 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1736 'Expand' : True, |
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1737 'Query' : { 'StudyDate' : '-20051201' }}) |
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1738 self.assertEqual(0, len(a)) |
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1739 |
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1740 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1741 'Expand' : True, |
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1742 'Query' : { 'StudyDate' : '20061201-' }}) |
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1743 self.assertEqual(2, len(a)) |
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1744 for i in range(2): |
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1745 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1746 |
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1747 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1748 'Expand' : True, |
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1749 'Query' : { 'StudyDate' : '20061202-' }}) |
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1750 self.assertEqual(1, len(a)) |
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1751 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1752 |
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1753 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1754 'Expand' : True, |
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1755 'Query' : { 'StudyDate' : '20080819-' }}) |
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1756 self.assertEqual(1, len(a)) |
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1757 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1758 |
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1759 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1760 'Expand' : True, |
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1761 'Query' : { 'StudyDate' : '20080820-' }}) |
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1762 self.assertEqual(0, len(a)) |
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1763 |
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1764 |
| 14 | 1765 |
| 1766 def test_rest_query_retrieve(self): | |
| 1767 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1768 | |
| 1769 # Upload 8 instances | |
| 1770 for i in range(2): | |
| 1771 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1772 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1773 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1774 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1775 | |
| 1776 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1777 for p in DoGet(_REMOTE, '/patients'): | |
| 1778 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1779 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1780 | |
| 1781 for q in DoGet(_REMOTE, '/queries'): | |
| 1782 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1783 | |
| 1784 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1785 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1786 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1787 'Query' : { |
| 1788 'PatientName' : '*NE*', | |
| 1789 'StudyDate' : '*', | |
| 1790 }})['ID'] | |
| 14 | 1791 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1792 | |
| 1793 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1794 self.assertTrue('answers' in b) | |
| 1795 self.assertTrue('level' in b) | |
| 1796 self.assertTrue('modality' in b) | |
| 1797 self.assertTrue('query' in b) | |
| 1798 self.assertTrue('retrieve' in b) | |
| 1799 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1800 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1801 | |
| 1802 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1803 self.assertEqual(2, len(q)) |
| 14 | 1804 self.assertTrue('PatientName' in q) |
| 27 | 1805 self.assertTrue('StudyDate' in q) |
| 14 | 1806 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1807 self.assertEqual('*', q['StudyDate']) |
| 14 | 1808 |
| 1809 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1810 | |
| 1811 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1812 self.assertTrue('content' in s) | |
| 1813 self.assertTrue('retrieve' in s) | |
| 1814 | |
| 1815 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1816 self.assertEqual('887', s['PatientID']) | |
| 1817 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1818 | |
| 1819 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1820 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1821 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1822 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1823 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1824 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1825 | |
| 112 | 1826 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1827 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1828 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1829 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1830 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1831 | |
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1832 # New in Orthanc 1.4.3 |
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1833 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1834 self.assertEqual(2, len(s)) |
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1835 for i in range(2): |
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1836 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1837 self.assertEqual('887', s[i]['PatientID']) |
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1838 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1839 |
| 14 | 1840 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1841 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1842 | |
| 1843 | |
| 1844 def test_parent(self): | |
| 1845 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1846 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1847 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1848 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1849 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
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1850 self.assertEqual(instance, u) |
| 14 | 1851 |
| 1852 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1853 self.assertEqual('Patient', a['Type']) | |
| 1854 self.assertEqual(patient, a['ID']) | |
| 1855 | |
| 1856 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1857 self.assertEqual('Patient', a['Type']) | |
| 1858 self.assertEqual(patient, a['ID']) | |
| 1859 | |
| 1860 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1861 self.assertEqual('Study', a['Type']) | |
| 1862 self.assertEqual(study, a['ID']) | |
| 1863 | |
| 1864 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1865 self.assertEqual('Patient', a['Type']) | |
| 1866 self.assertEqual(patient, a['ID']) | |
| 1867 | |
| 1868 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1869 self.assertEqual('Study', a['Type']) | |
| 1870 self.assertEqual(study, a['ID']) | |
| 1871 | |
| 1872 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1873 self.assertEqual('Series', a['Type']) | |
| 1874 self.assertEqual(series, a['ID']) | |
| 1875 | |
| 1876 | |
| 1877 def test_shanon(self): | |
| 1878 def Anonymize(instance, replacements = {}): | |
| 119 | 1879 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1880 'Replace' : replacements, | |
| 1881 'Force' : True, | |
| 1882 }, 'application/json') | |
| 14 | 1883 |
| 1884 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1885 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1886 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1887 | |
| 1888 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1889 ids = [ 'ozp00SjY2xG', | |
| 1890 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1891 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1892 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1893 | |
| 1894 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1895 for i in range(4): | |
| 1896 self.assertNotEqual(ids[i], a[i]) | |
| 1897 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1898 | |
| 1899 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1900 for i in range(4): | |
| 1901 self.assertNotEqual(ids[i], a[i]) | |
| 1902 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1903 | |
| 1904 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1905 self.assertEqual('instance', a[3]) | |
| 1906 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1907 | |
| 1908 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1909 self.assertEqual('series', a[2]) | |
| 1910 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1911 | |
| 1912 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1913 self.assertEqual('study', a[1]) | |
| 1914 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1915 | |
| 1916 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1917 self.assertEqual('patient', a[0]) | |
| 1918 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1919 | |
| 1920 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1921 'StudyInstanceUID' : 'study', | |
| 1922 'SeriesInstanceUID' : 'series', | |
| 1923 'SOPInstanceUID' : 'instance' }), tags) | |
| 1924 self.assertEqual('patient', a[0]) | |
| 1925 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1926 | |
| 1927 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1928 | |
| 1929 | |
| 1930 def test_shanon_2(self): | |
| 1931 def Modify(instance, replacements = {}): | |
| 119 | 1932 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1933 'Replace' : replacements, | |
| 1934 'Force': True, | |
| 1935 }, 'application/json') | |
| 14 | 1936 |
| 1937 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1938 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1939 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1940 | |
| 1941 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1942 ids = [ 'ozp00SjY2xG', | |
| 1943 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1944 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1945 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1946 | |
| 1947 a = ExtractDicomTags(Modify(u), tags) | |
| 1948 self.assertEqual(ids[0], a[0]) | |
| 1949 self.assertEqual(ids[1], a[1]) | |
| 1950 self.assertEqual(ids[2], a[2]) | |
| 1951 self.assertNotEqual(ids[3], a[3]) | |
| 1952 self.assertEqual(0, len(a[4])) | |
| 1953 | |
| 1954 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1955 self.assertEqual(ids[0], a[0]) | |
| 1956 self.assertEqual(ids[1], a[1]) | |
| 1957 self.assertEqual(ids[2], a[2]) | |
| 1958 self.assertEqual('instance', a[3]) | |
| 1959 | |
| 1960 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1961 self.assertEqual(ids[0], a[0]) | |
| 1962 self.assertEqual(ids[1], a[1]) | |
| 1963 self.assertEqual('series', a[2]) | |
| 1964 self.assertNotEqual(ids[3], a[3]) | |
| 1965 | |
| 1966 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1967 self.assertEqual(ids[0], a[0]) | |
| 1968 self.assertEqual('study', a[1]) | |
| 1969 self.assertNotEqual(ids[2], a[2]) | |
| 1970 self.assertNotEqual(ids[3], a[3]) | |
| 1971 | |
| 1972 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1973 self.assertEqual('patient', a[0]) | |
| 1974 self.assertNotEqual(ids[1], a[1]) | |
| 1975 self.assertNotEqual(ids[2], a[2]) | |
| 1976 self.assertNotEqual(ids[3], a[3]) | |
| 1977 | |
| 1978 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1979 'StudyInstanceUID' : 'study', | |
| 1980 'SeriesInstanceUID' : 'series', | |
| 1981 'SOPInstanceUID' : 'instance' }), tags) | |
| 1982 self.assertEqual('patient', a[0]) | |
| 1983 self.assertEqual('study', a[1]) | |
| 1984 self.assertEqual('series', a[2]) | |
| 1985 self.assertEqual('instance', a[3]) | |
| 1986 | |
| 1987 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1988 | |
| 1989 | |
| 1990 def test_instances_tags(self): | |
| 1991 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1992 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1993 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1994 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1995 | |
| 1996 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1997 self.assertEqual(2, len(i)) | |
| 1998 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1999 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2000 | |
| 2001 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 2002 self.assertEqual(2, len(i)) | |
| 2003 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2004 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 2005 | |
| 2006 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 2007 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 2008 self.assertEqual(1, len(i)) | |
| 2009 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2010 | |
| 2011 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 2012 self.assertEqual(1, len(i)) | |
| 2013 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 2014 | |
|
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2015 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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2016 self.assertEqual(1, len(i)) |
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2017 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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2018 |
| 14 | 2019 |
| 2020 def test_lookup(self): | |
| 2021 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2022 self.assertEqual(0, len(a)) | |
| 2023 | |
| 2024 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 2025 | |
| 2026 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 2027 self.assertEqual(1, len(a)) | |
| 2028 self.assertEqual('Patient', a[0]['Type']) | |
| 2029 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 2030 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 2031 | |
| 2032 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 2033 self.assertEqual(1, len(a)) | |
| 2034 self.assertEqual('Study', a[0]['Type']) | |
| 2035 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 2036 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 2037 | |
| 2038 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 2039 self.assertEqual(1, len(a)) | |
| 2040 self.assertEqual('Series', a[0]['Type']) | |
| 2041 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 2042 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 2043 | |
| 2044 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 2045 self.assertEqual(1, len(a)) | |
| 2046 self.assertEqual('Instance', a[0]['Type']) | |
| 2047 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 2048 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 2049 | |
| 2050 DropOrthanc(_REMOTE) | |
| 2051 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 2052 self.assertEqual(0, len(a)) | |
| 2053 | |
| 15 | 2054 |
| 2055 def test_autorouting(self): | |
| 2056 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 2057 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 2058 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 2059 | |
| 2060 # Check that this version is >= 0.8.0 | |
| 2061 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 2062 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 2063 | |
| 2064 UploadInstance(_REMOTE, knee1) | |
| 2065 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2066 | |
| 2067 DropOrthanc(_REMOTE) | |
| 2068 DropOrthanc(_LOCAL) | |
| 174 | 2069 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 2070 UploadInstance(_REMOTE, knee1) |
| 2071 UploadInstance(_REMOTE, knee2) | |
| 2072 UploadInstance(_REMOTE, other) | |
| 2073 WaitEmpty(_REMOTE) | |
| 174 | 2074 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2075 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 2076 | |
| 2077 DropOrthanc(_REMOTE) | |
| 2078 DropOrthanc(_LOCAL) | |
| 174 | 2079 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 2080 UploadInstance(_REMOTE, knee1) |
| 2081 UploadInstance(_REMOTE, knee2) | |
| 2082 UploadInstance(_REMOTE, other) | |
| 2083 WaitEmpty(_REMOTE) | |
| 174 | 2084 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2085 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 2086 | |
| 2087 DropOrthanc(_REMOTE) | |
| 2088 DropOrthanc(_LOCAL) | |
| 174 | 2089 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 2090 UploadInstance(_REMOTE, knee1) |
| 2091 WaitEmpty(_REMOTE) | |
| 174 | 2092 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2093 i = DoGet(_LOCAL, '/instances') |
| 2094 self.assertEqual(1, len(i)) | |
| 2095 | |
| 2096 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 2097 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 2098 f.flush() | |
| 45 | 2099 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 2100 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 2101 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 2102 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 2103 |
| 2104 | |
| 2105 def test_storescu_rf(self): | |
| 2106 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2107 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2108 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2109 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2110 |
| 2111 | |
| 2112 def test_anonymize_instance(self): | |
| 2113 def AnonymizeAndUpload(instanceId, parameters): | |
| 2114 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2115 'application/json'), 'application/dicom')['ID'] | |
| 2116 | |
| 2117 def ModifyAndUpload(instanceId, parameters): | |
| 2118 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2119 'application/json'), 'application/dicom')['ID'] | |
| 2120 | |
| 2121 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2122 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2123 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2124 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2125 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2126 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2127 | |
| 2128 b = AnonymizeAndUpload(a, '{}') | |
| 2129 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2130 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2131 | |
| 2132 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2133 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2134 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2135 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2136 | |
| 2137 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2138 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2139 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2140 | |
| 2141 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2142 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2143 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2144 | |
| 2145 # Examples from the Wiki | |
|
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2146 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2147 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2148 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2149 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2150 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2151 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2152 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2153 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2154 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2155 | |
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2156 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2157 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2158 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2159 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2160 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2161 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2162 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2163 | |
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2164 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2165 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2166 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2167 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2168 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2169 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2170 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2171 | |
| 2172 | |
| 2173 # Test modify non-existing | |
| 2174 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2175 json.dumps({ | |
| 2176 'PatientName' : 'Jodogne', | |
| 2177 'Modality' : 'CT', | |
| 2178 }))['ID'] | |
| 2179 | |
| 2180 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2181 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2182 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2183 | |
| 2184 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2185 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2186 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2187 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2188 | |
|
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2189 |
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2190 def test_incoming_jpeg(self): |
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2191 def storescu(image, acceptUnknownSopClassUid): |
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2192 if acceptUnknownSopClassUid: |
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2193 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2194 else: |
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2195 tmp = [ '-xs' ] |
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2196 |
|
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2197 with open(os.devnull, 'w') as FNULL: |
|
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2198 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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2199 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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2200 GetDatabasePath(image) ], |
|
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2201 stderr = FNULL) |
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2202 |
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2203 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2204 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
|
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2205 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2206 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
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2207 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2208 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
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2209 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
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2210 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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2211 storescu('UnknownSopClassUid.dcm', True) |
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2212 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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2213 |
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2214 |
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2215 def test_storescu_jpeg(self): |
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2216 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2217 |
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2218 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2219 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2220 | |
| 2221 # This is JPEG lossless | |
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2222 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2223 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
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2224 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2225 |
|
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2226 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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2227 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2228 |
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2229 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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2230 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2231 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2232 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2233 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2234 |
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2235 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2236 |
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2237 DropOrthanc(_REMOTE) |
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2238 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2239 |
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2240 |
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2241 def test_pixel_data(self): |
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2242 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2243 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2244 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2245 |
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2246 phenixSize = 358 * 512 * 2 |
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2247 colorSize = 1000 * 1000 * 3 |
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2248 jpegSize = 51918 |
|
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diff
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|
2249 |
|
2a29bcff60a7
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18
diff
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|
2250 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
|
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parents:
18
diff
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|
2251 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
|
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tests of image decoding
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parents:
18
diff
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|
2252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
|
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parents:
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diff
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|
2253 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2254 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2255 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
|
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parents:
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diff
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|
2256 |
|
2a29bcff60a7
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parents:
18
diff
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|
2257 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2258 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
|
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parents:
18
diff
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|
2259 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2260 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2261 def test_decode_brainix(self): |
|
2a29bcff60a7
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parents:
18
diff
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|
2262 brainix = [ |
|
2a29bcff60a7
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parents:
18
diff
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|
2263 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
|
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tests of image decoding
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parents:
18
diff
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|
2264 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2265 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2266 ] |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2267 h = '6fb11b932d535c2be04beabd99793ff8' |
|
2a29bcff60a7
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parents:
18
diff
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|
2268 maxValue = 426.0 |
|
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18
diff
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|
2269 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2270 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2271 for i in brainix: |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2272 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2273 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
|
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parents:
18
diff
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|
2274 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2275 truth2 = map(lambda x: min(255, x), truth.getdata()) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2276 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2277 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2278 |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2279 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2280 for i in brainix: |
|
2a29bcff60a7
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parents:
18
diff
changeset
|
2281 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2282 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2283 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2284 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
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parents:
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diff
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|
2285 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2286 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2287 def test_decode_color(self): |
|
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18
diff
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|
2288 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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parents:
18
diff
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|
2289 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2290 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2291 for i in [ imagej, color ]: |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2292 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
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parents:
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diff
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|
2293 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
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parents:
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diff
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|
2294 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2295 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
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tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2296 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
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parents:
18
diff
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|
2297 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
changeset
|
2298 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
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parents:
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diff
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|
2299 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2300 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2301 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2302 def test_decode_rf(self): |
|
2a29bcff60a7
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parents:
18
diff
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|
2303 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2304 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2305 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2306 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2307 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2308 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2309 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2310 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2311 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2312 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2313 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2314 def test_decode_multiframe(self): |
|
2a29bcff60a7
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parents:
18
diff
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|
2315 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2316 |
|
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diff
changeset
|
2317 # Test the first frame |
|
2a29bcff60a7
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parents:
18
diff
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|
2318 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2319 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
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parents:
18
diff
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|
2320 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2321 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2322 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
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|
2323 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2324 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2325 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2326 |
|
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|
2327 # Test the last frame |
|
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diff
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|
2328 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2329 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
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diff
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|
2330 |
|
2a29bcff60a7
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diff
changeset
|
2331 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2332 def test_decode_signed(self): |
|
2a29bcff60a7
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|
2333 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
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|
2334 minValue = -2000 |
|
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diff
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|
2335 maxValue = 4042 |
|
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diff
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|
2336 |
|
2a29bcff60a7
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diff
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|
2337 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2338 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
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|
2339 |
|
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diff
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|
2340 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2341 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
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diff
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|
2342 |
|
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diff
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|
2343 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2344 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
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diff
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|
2345 |
|
2a29bcff60a7
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diff
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|
2346 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2347 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
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diff
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|
2348 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
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diff
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|
2349 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
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18
diff
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|
2350 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2351 |
| 2352 | |
|
46
85b2e36ed392
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|
2353 def test_googlecode_issue_32(self): |
|
92
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2354 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2355 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2356 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2357 |
| 22 | 2358 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2359 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2360 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2361 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2362 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2363 | |
|
92
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parents:
89
diff
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|
2364 # Replay the same test using Latin1 as default encoding: This must fail |
|
dbcbffb889da
test_findscu_encoding
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parents:
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diff
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|
2365 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
dbcbffb889da
test_findscu_encoding
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diff
changeset
|
2366 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2367 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
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parents:
89
diff
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|
2368 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2369 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2370 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
test_findscu_encoding
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diff
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|
2371 |
|
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test_findscu_encoding
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|
2372 |
| 22 | 2373 def test_encodings(self): |
| 23 | 2374 # Latin-1 (ISO_IR 100) |
| 22 | 2375 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2376 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2377 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2378 |
| 2379 # Latin-2 (ISO_IR 101) | |
| 2380 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2381 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2382 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2383 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2384 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2385 | |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2386 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2387 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2388 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2389 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2390 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2391 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2392 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2393 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2394 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2395 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2396 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2397 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2398 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2399 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2400 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2401 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2402 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2403 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2404 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2405 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2406 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2407 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2408 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2409 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2410 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2411 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2412 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2413 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2414 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2415 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2416 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2417 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2418 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2419 |
| 174 | 2420 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2421 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2422 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2423 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2424 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2425 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2426 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2427 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2428 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2429 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2430 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2431 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2432 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2433 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2434 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2435 def test_resources_since_limit(self): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2436 # Upload 16 instances |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2437 for i in range(4): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2438 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2439 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2440 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2441 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2442 |
|
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diff
changeset
|
2443 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2444 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2445 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
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diff
changeset
|
2446 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
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diff
changeset
|
2447 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
2448 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2450 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2451 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2452 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2453 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
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diff
changeset
|
2454 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
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diff
changeset
|
2455 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
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diff
changeset
|
2456 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
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diff
changeset
|
2457 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2458 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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diff
changeset
|
2459 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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diff
changeset
|
2460 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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diff
changeset
|
2461 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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diff
changeset
|
2462 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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diff
changeset
|
2463 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2464 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2465 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2466 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2467 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2468 s = {} |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2469 since = 0 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2470 while True: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2471 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2472 if len(t) == 0: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2473 break |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2474 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2475 since += len(t) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2476 for i in t: |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2477 s[i] = None |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2478 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2479 self.assertEqual(16, len(s)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2480 for instance in DoGet(_REMOTE, '/instances'): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2481 self.assertTrue(instance in s) |
| 36 | 2482 |
| 2483 | |
| 2484 def test_create_pdf(self): | |
| 2485 # Upload 4 instances | |
| 2486 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2487 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2488 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2489 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2490 | |
| 2491 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2492 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2493 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2494 | |
| 2495 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2496 pdf = f.read() | |
| 2497 | |
| 2498 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2499 json.dumps({ | |
| 2500 'Tags' : { | |
| 2501 'PatientName' : 'Jodogne', | |
| 2502 'Modality' : 'CT', | |
| 2503 }, | |
| 2504 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2505 })) | |
| 2506 | |
| 2507 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2508 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2509 | |
| 2510 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2511 self.assertEqual(len(b), len(pdf) + 1) | |
| 2512 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2513 | |
| 2514 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2515 json.dumps({ | |
| 2516 'Parent' : brainixPatient, | |
| 2517 'Tags' : { | |
| 2518 'PatientName' : 'Jodogne', | |
| 2519 } | |
| 2520 }))) | |
| 2521 | |
| 2522 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2523 json.dumps({ | |
| 2524 'Parent' : brainixPatient, | |
| 2525 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2526 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2527 })) | |
| 2528 | |
| 2529 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2530 | |
| 2531 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2532 json.dumps({ | |
| 2533 'Parent' : brainixStudy, | |
| 2534 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2535 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2536 })) | |
| 2537 | |
| 2538 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2539 | |
| 2540 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2541 json.dumps({ | |
| 2542 'Parent' : brainixEpi, | |
| 37 | 2543 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2544 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2545 })) | |
| 2546 | |
| 2547 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2548 | |
| 2549 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2550 self.assertEqual(len(b), len(pdf)) | |
| 2551 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2552 | |
| 2553 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2554 |
| 2555 | |
| 2556 def test_create_series(self): | |
| 2557 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2558 json.dumps({ | |
| 2559 'Tags' : { | |
| 40 | 2560 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2561 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2562 'Modality' : 'CT', |
| 2563 }, | |
| 2564 'Content' : [ | |
| 40 | 2565 { |
| 2566 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2567 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2568 }, | |
| 38 | 2569 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2570 ] | |
| 2571 })) | |
| 2572 | |
| 2573 s = DoGet(_REMOTE, i['Path']) | |
| 2574 self.assertEqual('Series', s['Type']) | |
| 2575 self.assertEqual(s['ID'], i['ID']) | |
| 2576 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2577 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2578 self.assertEqual('Complete', s['Status']) | |
| 40 | 2579 |
| 2580 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2581 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2582 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2583 if 'ImageComments' in a: | |
| 2584 self.assertEqual('Tutu', a['ImageComments']) | |
| 2585 else: | |
| 2586 self.assertEqual('Tutu', b['ImageComments']) | |
| 2587 | |
| 2588 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2589 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2590 'Sébastien Jodogne') | |
| 47 | 2591 |
| 2592 | |
| 2593 def test_create_binary(self): | |
| 2594 binary = ''.join(map(chr, range(256))) | |
| 2595 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2596 tags = { | |
| 2597 'PatientName' : 'Jodogne', | |
| 2598 '8899-8899' : encoded | |
| 2599 } | |
| 2600 | |
| 2601 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2602 json.dumps({ | |
| 266 | 2603 'Tags' : tags, |
| 2604 'PrivateCreator' : 'TestBinary', | |
| 47 | 2605 })) |
| 2606 | |
| 2607 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2608 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2609 | |
| 2610 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2611 json.dumps({ | |
| 2612 'InterpretBinaryTags' : False, | |
| 266 | 2613 'Tags' : tags, |
| 2614 'PrivateCreator' : 'TestBinary', | |
| 47 | 2615 })) |
| 2616 | |
| 2617 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2618 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2619 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2620 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2621 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2622 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2623 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2624 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2625 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2626 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2627 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2628 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2629 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2630 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2631 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2632 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2633 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2634 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2635 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2636 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2637 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2638 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2639 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2640 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2641 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2642 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2643 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2644 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2645 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2646 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2647 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2648 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2649 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2650 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2651 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2652 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2653 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2654 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2655 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2656 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2657 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2658 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2659 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2660 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2661 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2662 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2663 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2664 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2665 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2666 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2667 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2668 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2669 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2670 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2671 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2672 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2673 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2674 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2675 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2676 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2677 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2678 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2679 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2680 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2681 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2682 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2683 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2684 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2685 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2686 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2687 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2688 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2689 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2690 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2691 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2692 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2693 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2694 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2695 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2696 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2697 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2698 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2699 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2700 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2701 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2702 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2703 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2704 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2705 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2706 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2707 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2708 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2709 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2710 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2711 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2712 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2713 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2714 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2715 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2716 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2717 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2718 |
| 52 | 2719 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2720 | |
| 2721 | |
| 2722 def test_compression(self): | |
| 2723 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2724 | |
| 2725 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2726 | |
| 2727 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2728 # uncompress the data before running the test | |
| 2729 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2730 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2731 | |
| 2732 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2733 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2734 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2735 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2736 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2737 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2738 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2739 | |
| 2740 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2741 self.assertTrue('compress' in ops) | |
| 2742 self.assertTrue('uncompress' in ops) | |
| 2743 self.assertTrue('is-compressed' in ops) | |
| 2744 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2745 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2746 | |
| 2747 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2748 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2749 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2750 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2751 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2752 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2753 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2754 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2755 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2756 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2757 | |
| 2758 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2759 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2760 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2761 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2762 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2763 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2764 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2765 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2766 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2767 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2768 |
| 2769 | |
| 2770 def test_ordered_slices(self): | |
| 2771 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2772 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2773 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2774 self.assertEqual('Sequence', o['Type']) | |
| 2775 self.assertEqual(1, len(o['Dicom'])) | |
| 2776 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2777 self.assertEqual(76, len(o['Slices'])) | |
| 2778 for j in range(76): | |
| 2779 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2780 | |
| 68 | 2781 self.assertEqual(1, len(o['SlicesShort'])) |
| 2782 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2783 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2784 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2785 | |
| 53 | 2786 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2787 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2788 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2789 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2790 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2791 | |
| 2792 self.assertEqual('Volume', o['Type']) | |
| 2793 self.assertEqual(3, len(o['Dicom'])) | |
| 2794 self.assertEqual(3, len(o['Slices'])) | |
| 2795 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2796 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2797 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2798 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2799 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2800 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2801 | |
| 68 | 2802 self.assertEqual(3, len(o['SlicesShort'])) |
| 2803 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2804 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2805 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2806 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2807 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2808 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2809 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2810 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2811 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2812 | |
| 53 | 2813 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2814 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2815 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2816 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2817 | |
| 2818 self.assertEqual('Sequence', o['Type']) | |
| 2819 self.assertEqual(2, len(o['Dicom'])) | |
| 2820 self.assertEqual(2, len(o['Slices'])) | |
| 2821 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2822 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2823 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2824 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2825 |
| 68 | 2826 self.assertEqual(2, len(o['SlicesShort'])) |
| 2827 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2828 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2829 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2830 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2831 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2832 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2833 | |
| 2834 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2835 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2836 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2837 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2838 |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2839 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2840 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2841 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2842 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2843 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2844 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2845 |
|
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2846 # 1 Matching patient, track the job |
| 138 | 2847 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2848 '--study', | |
| 2849 '-k', '0008,0052=STUDY', | |
| 2850 '-k', 'AccessionNumber=A10003245599' | |
| 2851 ]))) | |
|
137
412d5f70447e
testing asynchronous c-move
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
136
diff
changeset
|
2852 |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2853 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2854 |
| 55 | 2855 |
| 2856 def test_dicom_to_json(self): | |
| 2857 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2858 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2859 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2860 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2861 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2862 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2863 # Tags for compatibility with DCMTK 3.6.0 |
| 2864 'RETIRED_OtherPatientIDs', | |
| 2865 'OtherPatientIDs', | |
| 2866 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2867 ])) |
| 55 | 2868 |
| 2869 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2870 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2871 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2872 ])) |
| 55 | 2873 |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2874 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2875 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2876 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2877 ])) |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2878 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2879 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2880 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2881 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2882 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2883 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2884 self.assertEqual(aa, tt) |
| 57 | 2885 |
| 2886 | |
| 2887 def test_batch_archive(self): | |
| 2888 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2889 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2890 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2891 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2892 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2893 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2894 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2895 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2896 | |
| 2897 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2898 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2899 self.assertEqual(0, len(z.namelist())) | |
| 2900 | |
| 2901 # One patient | |
| 2902 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2903 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2904 self.assertEqual(4, len(z.namelist())) | |
| 2905 | |
| 2906 # One patient + twice its study + one series from other patient | |
| 2907 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2908 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2909 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2910 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2911 ]) | |
| 2912 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2913 self.assertEqual(6, len(z.namelist())) | |
| 2914 | |
| 2915 # One patient + one series + one instance | |
| 2916 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2917 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2918 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2919 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2920 ]) | |
| 2921 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2922 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2923 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2924 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2925 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2926 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2927 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2928 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2929 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2930 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2931 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2932 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2933 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2934 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2935 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2936 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2937 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2938 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2939 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2940 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2941 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2942 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2943 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2944 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2945 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2946 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2947 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2948 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2949 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2950 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2951 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2952 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2953 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2954 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2955 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2956 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2957 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2958 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2959 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2960 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2961 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2962 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2963 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2964 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2965 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2966 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2967 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2968 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2969 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2970 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2971 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2972 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2973 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2974 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2975 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2976 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2977 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2978 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2979 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2980 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2981 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2982 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2983 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2984 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2985 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2986 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2987 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2988 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2989 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2990 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2991 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2992 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2993 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2994 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2995 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2996 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2997 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2998 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2999 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3000 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3001 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3002 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3003 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3004 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3005 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3006 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3007 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3008 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3009 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3010 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3011 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3012 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3013 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3014 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3015 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3016 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3017 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3018 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3019 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3020 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3021 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3022 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3023 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3024 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3025 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3026 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3027 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3028 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3029 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3030 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3031 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3032 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3033 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3034 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3035 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3036 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3037 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3038 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3039 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3040 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3041 self.assertTrue('CT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3042 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3043 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3044 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3045 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
strip trailing 0 char that appears with some findscu versions
am@osimis.io
parents:
175
diff
changeset
|
3046 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3047 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3048 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3049 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3050 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3051 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3052 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3053 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3054 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3055 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3056 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3057 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3058 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3059 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3060 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3061 else: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3062 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3063 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3064 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3065 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3066 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3067 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3068 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3069 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3070 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3071 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3072 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3073 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3074 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3075 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3076 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 3077 |
| 3078 | |
| 3079 def test_raw_frame(self): | |
| 3080 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 3081 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3082 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3083 self.assertEqual(512 * 512 * 2, len(a)) | |
| 3084 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 3085 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 3086 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 3087 | |
| 3088 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 3089 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3090 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 3091 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 3092 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 3093 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3094 self.assertEqual("L", im.mode) | |
| 3095 self.assertEqual(512, im.size[0]) | |
| 3096 self.assertEqual(512, im.size[1]) | |
| 3097 | |
| 3098 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 3099 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 3100 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3101 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3102 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 3103 self.assertEqual(69214, len(a)) | |
| 3104 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 3105 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3106 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3107 self.assertEqual("RGB", im.mode) | |
| 3108 self.assertEqual(512, im.size[0]) | |
| 3109 self.assertEqual(512, im.size[1]) | |
| 3110 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 3111 self.assertEqual("RGB", im.mode) | |
| 3112 self.assertEqual(512, im.size[0]) | |
| 3113 self.assertEqual(512, im.size[1]) | |
| 81 | 3114 |
| 3115 | |
| 3116 | |
| 3117 def test_rest_movescu(self): | |
| 3118 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3119 | |
| 3120 # Upload 4 instances | |
| 3121 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3122 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3123 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3124 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3125 | |
| 3126 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3127 for p in DoGet(_REMOTE, '/patients'): | |
| 3128 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3129 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3130 | |
| 3131 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3132 | |
| 3133 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3134 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3135 'Resources' : [ | |
| 3136 { | |
| 3137 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3138 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3139 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3140 } | |
| 3141 ]}) | |
| 3142 | |
| 3143 # Upload series Brainix/Flair/* | |
| 3144 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3145 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3146 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3147 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3148 | |
| 3149 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3150 'Resources' : [ | |
| 3151 { | |
| 3152 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3153 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3154 } | |
| 3155 ]}) | |
| 3156 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3157 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3158 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3159 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3160 | |
| 3161 # Upload series Brainix/Epi/* | |
| 3162 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3163 'Resources' : [ | |
| 3164 { | |
| 3165 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3166 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3167 } | |
| 3168 ]}) | |
| 3169 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3170 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3171 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3172 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3173 | |
| 3174 # Upload study Knee/* | |
| 3175 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3176 'Resources' : [ | |
| 3177 { | |
| 3178 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3179 } | |
| 3180 ]}) | |
| 3181 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3182 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3183 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3184 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3185 | |
| 3186 # Reset | |
| 3187 for p in DoGet(_REMOTE, '/patients'): | |
| 3188 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3189 | |
| 3190 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3191 | |
| 3192 | |
| 3193 # Upload all at once | |
| 3194 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3195 'Resources' : [ | |
| 3196 { | |
| 3197 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3198 }, | |
| 3199 { | |
| 3200 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3201 } | |
| 3202 ]}) | |
| 3203 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3204 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3205 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3206 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3207 | |
|
86
0401ef51f5c1
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parents:
83
diff
changeset
|
3208 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3209 |
|
0401ef51f5c1
test_reconstruct_json
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parents:
83
diff
changeset
|
3210 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3211 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3212 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3213 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3214 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3215 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3216 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3217 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3218 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3219 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3220 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3221 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3222 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3223 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3224 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3225 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3226 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3227 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3228 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3229 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3230 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3231 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3232 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3233 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3234 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3235 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3236 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3237 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3238 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3239 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3240 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3241 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3242 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3243 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3244 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3245 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3246 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3247 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3248 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3249 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3250 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3251 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3252 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3253 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3254 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3255 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3256 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3257 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3258 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3259 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3260 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3261 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3262 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3263 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3264 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3265 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3266 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3267 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3268 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3269 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3270 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3271 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3272 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3273 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3274 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3275 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3276 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3277 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3278 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3279 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3280 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3281 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3282 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3283 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3284 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3285 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3286 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3287 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3288 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3289 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3290 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3291 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3292 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3293 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3294 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3295 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3296 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3297 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3298 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3299 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3300 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3301 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3302 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3303 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3304 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3305 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3306 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3316 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3317 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3318 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3319 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3320 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3321 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3322 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3323 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3324 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3325 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3326 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3327 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3328 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3329 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3330 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3331 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3332 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3333 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3334 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3335 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3336 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3337 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3338 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3339 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3340 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3341 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3342 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3343 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3344 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3345 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3346 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3347 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3348 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3349 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3350 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3351 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3352 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3353 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3354 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3355 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3356 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3357 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3358 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3359 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3360 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3361 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3362 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3363 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3364 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3365 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3366 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3367 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3368 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3369 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3370 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3371 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3372 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3373 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3374 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3375 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3376 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3377 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3378 }, |
| 119 | 3379 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3380 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3381 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3382 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3383 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3384 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3385 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3386 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3387 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3388 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3389 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3390 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3391 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3392 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3393 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3394 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3395 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3396 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3397 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3398 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3399 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3400 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3401 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3402 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3403 |
| 104 | 3404 def test_httpClient_lua(self): |
| 3405 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3406 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3407 | |
| 3408 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3409 |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3410 |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3411 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3412 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3413 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3414 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3415 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3416 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3417 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3418 |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3419 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
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test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3420 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3421 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3422 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3423 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3424 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3425 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3426 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3427 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3428 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3429 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3430 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3431 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3432 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3433 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3434 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3435 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3436 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3437 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3438 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3439 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3440 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3441 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
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parents:
104
diff
changeset
|
3442 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3443 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3444 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3445 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3446 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3447 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3448 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3449 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3450 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3451 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3452 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3453 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3454 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3455 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3456 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3457 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3458 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3459 self.assertTrue('PatientID' in modified) |
|
113
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test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3460 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3461 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3462 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3463 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3464 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
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diff
changeset
|
3465 |
|
113
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parents:
112
diff
changeset
|
3466 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3467 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3468 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3469 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3470 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3471 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
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diff
changeset
|
3472 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3473 |
|
3e5934363e76
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diff
changeset
|
3474 # Check using BRAINIX |
|
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112
diff
changeset
|
3475 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3476 'Query' : { 'PatientName' : 'B*' }, |
|
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diff
changeset
|
3477 'Limit' : 10 }) |
|
3e5934363e76
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diff
changeset
|
3478 self.assertEqual(4, len(a)) |
|
3e5934363e76
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diff
changeset
|
3479 |
|
3e5934363e76
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112
diff
changeset
|
3480 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3481 'Query' : { 'PatientName' : 'B*' }, |
|
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changeset
|
3482 'Limit' : 4 }) |
|
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diff
changeset
|
3483 self.assertEqual(4, len(a)) |
|
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changeset
|
3484 |
|
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diff
changeset
|
3485 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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diff
changeset
|
3486 'Query' : { 'PatientName' : 'B*' }, |
|
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changeset
|
3487 'Since' : 2, |
|
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diff
changeset
|
3488 'Limit' : 4 }) |
|
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diff
changeset
|
3489 self.assertEqual(2, len(a)) |
|
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diff
changeset
|
3490 |
|
3e5934363e76
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diff
changeset
|
3491 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
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changeset
|
3492 'Query' : { 'PatientName' : 'B*' }, |
|
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changeset
|
3493 'Limit' : 3 }) |
|
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diff
changeset
|
3494 self.assertEqual(3, len(a)) |
|
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diff
changeset
|
3495 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3496 b = [] |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3497 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3498 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3499 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3500 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3501 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3502 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3503 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3504 |
|
3e5934363e76
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diff
changeset
|
3505 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
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diff
changeset
|
3506 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3507 |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3508 # Check using KNEE |
|
3e5934363e76
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parents:
112
diff
changeset
|
3509 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3510 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3511 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3512 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3513 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3514 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3515 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3516 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3517 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3518 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3519 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3520 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3521 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3522 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3523 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3524 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3525 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3526 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3527 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3528 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3529 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3530 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3531 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
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diff
changeset
|
3532 # "PHI remaining after anonymization" |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3533 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3534 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3535 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3536 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3537 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3538 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3539 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3540 self.assertEqual(1, len(a)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3541 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3542 instance = a[0]['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3543 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3544 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3545 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3546 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3547 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3548 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3549 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3550 # (Patient's Mother's Birth Name) tags |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3551 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3552 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3553 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3554 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3555 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3556 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3557 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3558 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3559 self.assertTrue('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3560 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3561 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3562 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3563 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3564 self.assertFalse('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3565 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3566 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3567 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3568 for (key, value) in tags.iteritems(): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3569 t[value['Name']] = value['Value'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3570 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3571 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3572 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3573 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3574 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
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test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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113
diff
changeset
|
3575 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3576 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3577 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
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test_bitbucket_issue_46
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113
diff
changeset
|
3578 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3579 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3580 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
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diff
changeset
|
3581 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
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113
diff
changeset
|
3582 stderr = subprocess.STDOUT).split('\n') |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3583 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3584 |
|
a954c535fef6
test_bitbucket_issue_55
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parents:
117
diff
changeset
|
3585 def test_bitbucket_issue_55(self): |
|
a954c535fef6
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diff
changeset
|
3586 def Run(modify, query): |
|
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diff
changeset
|
3587 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3588 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3589 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3590 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3591 self.assertRaises(Exception, lambda: DoPost( |
|
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test_bitbucket_issue_55
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diff
changeset
|
3592 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
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test_bitbucket_issue_55
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diff
changeset
|
3593 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3594 |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3595 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
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diff
changeset
|
3596 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
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test_bitbucket_issue_55
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diff
changeset
|
3597 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
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diff
changeset
|
3598 DoDelete(_REMOTE, a) |
|
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diff
changeset
|
3599 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
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117
diff
changeset
|
3600 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3601 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3602 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3603 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3604 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3605 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3606 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3607 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3608 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3609 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3610 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3611 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3612 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3613 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3614 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3615 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3616 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3617 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3618 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3619 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3620 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3621 # is set to "false" (default value). |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3622 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3623 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3624 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3625 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3626 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3627 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3628 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3629 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3630 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3631 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3632 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3633 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3634 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3635 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3636 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3637 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3638 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3639 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3640 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3641 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3642 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3643 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3644 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3645 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3646 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3647 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3648 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3649 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3650 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3651 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3652 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3653 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3654 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3655 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3656 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3657 |
| 125 | 3658 |
| 3659 def test_gbk_alias(self): | |
| 3660 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3661 # This test fails on Orthanc <= 1.3.0 | |
| 3662 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3663 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3664 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3665 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3666 |
| 3667 | |
| 3668 def test_long_tag(self): | |
| 3669 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3670 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3671 | |
| 3672 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3673 self.assertTrue('0018,1020' in tags) | |
| 3674 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3675 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3676 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3677 | |
| 3678 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3679 self.assertTrue('0018,1020' in tags) | |
| 3680 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3681 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3682 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3683 | |
| 3684 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3685 self.assertTrue('SoftwareVersions' in tags) | |
| 3686 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3687 self.assertTrue('HeartRate' in tags) | |
| 3688 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3689 | |
| 3690 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3691 self.assertTrue('SoftwareVersions' in tags) | |
| 3692 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3693 | |
| 3694 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3695 self.assertTrue('SoftwareVersions' in tags) | |
| 3696 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3697 | |
| 3698 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3699 self.assertTrue('SoftwareVersions' in tags) | |
| 3700 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3701 | |
| 3702 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3703 self.assertEqual(1, len(tags)) | |
| 3704 self.assertTrue(i in tags.keys()) | |
| 3705 self.assertTrue('0018,1020' in tags[i]) | |
| 3706 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3707 | |
| 3708 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3709 self.assertEqual(1, len(tags)) | |
| 3710 self.assertTrue(i in tags.keys()) | |
| 3711 self.assertTrue('0018,1020' in tags[i]) | |
| 3712 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3713 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3714 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3715 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3716 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3717 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3718 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3719 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3720 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3721 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3722 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3723 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3724 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3725 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3726 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3727 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3728 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3729 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3730 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3731 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3732 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3733 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3734 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3735 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3736 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3737 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3738 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3739 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3740 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3741 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3742 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3743 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3744 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3745 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3746 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3747 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3748 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3749 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3750 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3751 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3752 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3753 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3754 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3755 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3756 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3757 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3758 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3759 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3760 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3761 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3762 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3763 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3764 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3765 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3766 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3767 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3768 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3769 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3770 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3771 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3772 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3773 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3774 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3775 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3776 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3777 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3778 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3779 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3780 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3781 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3782 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3783 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3784 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3785 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3786 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3787 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3788 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3789 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3790 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3791 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3793 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3794 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3796 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3797 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3804 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3805 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3806 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3807 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3808 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3809 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3810 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3811 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3812 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3813 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3814 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3815 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3816 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3817 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3818 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3819 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3820 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3821 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3822 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3823 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3824 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3825 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3826 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3827 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3828 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3829 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3830 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3831 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3832 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3833 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3834 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3835 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3836 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3837 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3838 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3839 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3840 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3841 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3842 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3843 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3844 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3845 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3846 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3847 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3848 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3849 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3850 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3851 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3852 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3853 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3854 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3855 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3856 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3857 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3858 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3859 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3860 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3861 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3862 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3863 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3864 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3865 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3866 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3867 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3868 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3869 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3870 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3871 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3872 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3873 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3874 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3875 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3876 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3877 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3878 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3879 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3880 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3881 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3882 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3883 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3884 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3885 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3886 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3887 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3888 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3889 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3890 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3891 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3892 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3893 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3894 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3895 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3896 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3897 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3898 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3899 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3900 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3901 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3902 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3903 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3904 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3905 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3906 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3907 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3908 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3909 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3910 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3911 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3912 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3913 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3914 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3915 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3916 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3917 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3918 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3919 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3920 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3921 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3922 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3923 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3924 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3925 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3926 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3927 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3928 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3929 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3930 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3931 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3932 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3933 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3934 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3935 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3936 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3937 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3938 |
|
144
7809fdf8056f
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3939 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3940 self.assertEqual('RestApi', m['Origin']) |
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3941 self.assertEqual('', m['RemoteAET']) |
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3942 self.assertNotEqual('', m['RemoteIP']) |
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3943 self.assertFalse('CalledAET' in m) |
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3944 self.assertEqual('alice', m['HttpUsername']) |
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3945 |
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3946 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3947 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3948 self.assertEqual('1', m['IndexInSeries']) |
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3949 self.assertTrue('ReceptionDate' in m) |
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3950 |
|
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3951 DoDelete(_REMOTE, '/instances/%s' % i) |
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3952 |
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3953 # Upload using the DICOM protocol |
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3954 subprocess.check_call([ FindExecutable('storescu'), |
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3955 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
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3956 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
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3957 '-xw' ]) # Propose JPEG2000 |
|
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3958 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
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3959 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
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3960 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
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3961 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
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3962 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
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3963 |
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3964 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
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3965 self.assertEqual('DicomProtocol', m['Origin']) |
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3966 self.assertEqual('STORESCU', m['RemoteAET']) |
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3967 self.assertNotEqual('', m['RemoteIP']) |
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3968 self.assertEqual('ANY-SCP', m['CalledAET']) |
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3969 self.assertFalse('HttpUsername' in m) |
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3970 |
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3971 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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3972 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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3973 self.assertEqual('1', m['IndexInSeries']) |
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3974 self.assertTrue('ReceptionDate' in m) |
| 147 | 3975 |
| 3976 | |
| 3977 def test_lua_deadlock(self): | |
| 3978 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 3979 # is with the lua script I'm using for conversion of images to | |
| 3980 # JPEG2000. When the script is used with 1.4.0 the first | |
| 3981 # instance appears to be stored and then everything just | |
| 3982 # halts, ie Orthanc wont respond to anything after that." | |
| 3983 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 3984 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 3985 |
| 3986 subprocess.check_call([ FindExecutable('storescu'), | |
| 3987 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 3988 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 3989 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 3990 ]) | |
| 3991 | |
| 3992 instances = DoGet(_REMOTE, '/instances') | |
| 3993 self.assertEqual(2, len(instances)) | |
| 3994 | |
| 3995 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 3996 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 3997 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 3998 self.assertEqual(t1, t2); |
|
154
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3999 |
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|
4000 |
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|
4001 def test_find_group_length(self): |
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4002 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
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4003 # one of the Generic Group Length tags (*, 0x0000) |
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4004 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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4005 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
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4006 self.assertFalse('UnableToProcess' in result) |
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4007 self.assertFalse('E:' in result) |
|
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4008 |
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4009 |
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4010 def test_split(self): |
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4011 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4012 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
|
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4013 knee1Sop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4014 knee2Sop = '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' |
|
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4015 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4016 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4017 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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4018 |
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4019 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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4020 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4021 |
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4022 info = DoGet(_REMOTE, '/studies/%s' % study) |
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4023 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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4024 |
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4025 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4026 (_REMOTE, '/studies/%s/split' % study, { |
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4027 'Series' : [ t2 ], |
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4028 'Replace' : { 'PatientName' : 'Hello' }, |
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|
4029 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 4030 'KeepSource' : False, |
| 4031 'Asynchronous' : True | |
|
179
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4032 })) |
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4033 |
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|
4034 self.assertNotEqual(None, job) |
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4035 |
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4036 studies = set(DoGet(_REMOTE, '/studies')) |
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4037 self.assertEqual(2, len(studies)) |
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4038 |
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4039 series = set(DoGet(_REMOTE, '/series')) |
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4040 self.assertEqual(2, len(series)) |
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4041 self.assertTrue(t1 in series) |
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4042 |
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4043 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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4044 self.assertTrue(study in studies) |
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4045 self.assertTrue(study2 in studies) |
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4046 |
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|
4047 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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4048 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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4049 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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4050 |
|
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4051 sopInstanceUids = set() |
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4052 for i in DoGet(_REMOTE, '/instances?expand'): |
|
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|
4053 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4054 |
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4055 self.assertTrue(knee1Sop in sopInstanceUids) |
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|
4056 |
|
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4057 # Fails if Orthanc <= 1.5.7 |
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4058 self.assertFalse(knee2Sop in sopInstanceUids) # Because "KeepSource" is False |
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4059 |
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4060 # One original instance is kept, another one is added because of the split |
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4061 self.assertEqual(2, len(sopInstanceUids)) |
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4062 |
|
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4063 |
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4064 def test_merge(self): |
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4065 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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4066 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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4067 kneeSop = '1.3.46.670589.11.17521.5.0.3124.2008081908590448738' |
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4068 brainixSop = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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4069 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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4070 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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4071 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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4072 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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4073 |
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4074 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4075 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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4076 |
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4077 job = MonitorJob2(_REMOTE, lambda: DoPost |
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4078 (_REMOTE, '/studies/%s/merge' % knee, { |
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4079 'Resources' : [ brainix ], |
| 181 | 4080 'KeepSource' : True, |
| 4081 'Synchronous' : False | |
|
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4082 })) |
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4083 |
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4084 self.assertNotEqual(None, job) |
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4085 |
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4086 studies = set(DoGet(_REMOTE, '/studies')) |
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4087 self.assertEqual(2, len(studies)) |
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4088 self.assertTrue(knee in studies) |
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4089 self.assertTrue(brainix in studies) |
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4090 |
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4091 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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4092 self.assertTrue(t1 in series) |
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4093 series.remove(t1) |
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4094 self.assertEqual(1, len(series)) |
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4095 |
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4096 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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4097 self.assertEqual(1, len(instances)) |
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4098 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4099 |
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4100 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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4101 self.assertEqual(1, len(instances)) |
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4102 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4103 |
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4104 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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4105 self.assertEqual(1, len(instances)) |
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4106 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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4107 |
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4108 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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4109 |
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4110 for key in tags['PatientMainDicomTags']: |
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4111 self.assertEqual(a[key], merged[key]) |
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4112 if (key in b and key != 'PatientSex'): |
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4113 self.assertNotEqual(a[key], b[key]) |
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4114 |
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4115 for key in tags['MainDicomTags']: |
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4116 # Not in the patient/study module |
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4117 if (not key in [ 'InstitutionName', |
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4118 'RequestingPhysician', |
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4119 'RequestedProcedureDescription', ]): |
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4120 self.assertEqual(a[key], merged[key]) |
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4121 if (key in b): |
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4122 self.assertNotEqual(a[key], b[key]) |
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4123 |
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4124 sopInstanceUids = set() |
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4125 for i in DoGet(_REMOTE, '/instances?expand'): |
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4126 sopInstanceUids.add(i['MainDicomTags']['SOPInstanceUID']) |
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4127 |
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4128 self.assertTrue(kneeSop in sopInstanceUids) |
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4129 self.assertTrue(brainixSop in sopInstanceUids) |
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4130 |
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4131 # Fails if Orthanc <= 1.5.7 |
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4132 # The 2 original instances are kept, another one is added because of the merge |
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4133 self.assertEqual(3, len(sopInstanceUids)) |
|
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4134 |
| 187 | 4135 |
| 4136 def test_async_archive(self): | |
| 4137 # Testing the asynchronous generation of archives/medias (new | |
| 4138 # in Orthanc 1.4.3) | |
| 4139 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4140 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4141 | |
| 4142 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4143 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4144 | |
| 4145 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4146 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4147 'Synchronous' : False | |
| 4148 })) | |
| 4149 | |
| 4150 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4151 self.assertEqual(1, len(z.namelist())) | |
| 4152 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4153 | |
| 4154 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4155 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4156 'Synchronous' : False | |
| 4157 })) | |
| 4158 | |
| 4159 # The archive from the first job has been replaced by the | |
| 4160 # archive from second job (as MediaArchiveSize == 1) | |
| 4161 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4162 | |
| 4163 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4164 self.assertEqual(2, len(z.namelist())) | |
| 4165 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4166 | |
| 4167 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4168 (_REMOTE, '/tools/create-archive', { | |
| 4169 'Synchronous' : False, | |
| 4170 'Resources' : [ kneeT1, kneeT2 ], | |
| 4171 })) | |
| 4172 | |
| 4173 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4174 self.assertEqual(2, len(z.namelist())) | |
| 4175 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4176 | |
| 4177 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4178 (_REMOTE, '/tools/create-media', { | |
| 4179 'Synchronous' : False, | |
| 4180 'Resources' : [ kneeT1, kneeT2 ], | |
| 4181 })) | |
| 4182 | |
| 4183 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4184 self.assertEqual(3, len(z.namelist())) | |
| 4185 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
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4186 |
| 187 | 4187 |
|
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4188 def test_queries_hierarchy(self): |
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4189 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
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4190 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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4191 |
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4192 tags = { |
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4193 'NumberOfPatientRelatedInstances' : '', |
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4194 'NumberOfPatientRelatedSeries' : '', |
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4195 'NumberOfPatientRelatedStudies' : '', |
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4196 'NumberOfStudyRelatedInstances' : '', |
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4197 'NumberOfStudyRelatedSeries' : '', |
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4198 'NumberOfSeriesRelatedInstances' : '', |
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4199 } |
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4200 |
|
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4201 tags2 = copy.copy(tags) |
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4202 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4203 |
|
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4204 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4205 'Level' : 'Patient', |
|
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4206 'Query' : tags2 |
|
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4207 }) ['ID'] |
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4208 |
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4209 study = DoPost(_REMOTE, '/modalities/self/query', { |
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changeset
|
4210 'Level' : 'Study', |
|
189
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test_dicom_disk_size
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diff
changeset
|
4211 'Query' : tags2 |
|
188
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diff
changeset
|
4212 }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4213 |
|
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new test: test_queries_hierarchy
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diff
changeset
|
4214 series = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4215 'Level' : 'Series', |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4216 'Query' : tags2 |
|
188
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new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4217 }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4218 |
|
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4219 instance = DoPost(_REMOTE, '/modalities/self/query', { |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4220 'Level' : 'Instance', |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4221 'Query' : tags2 |
|
188
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4222 }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4223 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4224 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4225 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4226 self.assertEqual('887', p[0]['PatientID']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4227 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4228 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4229 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4230 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4231 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4232 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4233 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4234 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4235 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4236 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4237 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4238 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4239 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4240 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4241 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4242 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4243 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4244 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4245 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4246 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4247 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4248 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4249 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4250 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4251 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4252 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4253 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4254 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4255 self.assertEqual(1, len(p)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4256 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4257 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4258 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4259 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4260 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4261 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4262 |
|
188
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4263 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4264 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4265 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4266 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4267 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4268 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4269 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4270 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4271 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4272 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4273 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4274 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4275 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4276 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4277 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4278 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4279 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4280 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4281 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4282 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4283 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4284 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4285 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4286 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4287 |
|
7d585263808b
new test: test_queries_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
187
diff
changeset
|
4288 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4289 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4290 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4291 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4292 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4293 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4294 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4295 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4296 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4297 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4298 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4299 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4300 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4301 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4302 self.assertEqual(1, s['CountStudies']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4303 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4304 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4305 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4306 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4307 |
|
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4308 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4309 def test_changes_2(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4310 # More consistent behavior since Orthanc 1.5.2 |
|
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test_changes_2 and test_bitbucket_issue_124
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195
diff
changeset
|
4311 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4312 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4313 # Make sure that this is not the first change |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4314 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4315 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4316 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4317 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4318 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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parents:
195
diff
changeset
|
4319 # No more instance, but there were previous changes |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4320 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4321 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4322 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4323 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4324 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4325 seq = c['Last'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4326 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4327 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4328 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4329 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4330 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4331 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4332 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4333 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4334 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4335 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4336 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4337 # Add one instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4338 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4339 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4340 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4341 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4342 self.assertEqual(4, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4343 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4344 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4345 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4346 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4347 self.assertEqual(1, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4348 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4349 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4350 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4351 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4352 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4353 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4354 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4355 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4356 # Remove the uploaded instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4357 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4358 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4359 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4360 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4361 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4362 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4363 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4364 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4365 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4366 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4367 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4368 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4369 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4370 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4371 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4372 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4373 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4374 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4375 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4376 def test_bitbucket_issue_124(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4377 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4378 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4379 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4380 self.assertEqual(2, len(z.namelist())) |
|
207
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4381 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4382 |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4383 def test_invalid_findscp(self): |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4384 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4385 findscu = CallFindScu([ '-S', '-k', '8,52=IMAGE', '-k', '8,16', '-k', '2,2' ]) |
|
a515eec74078
test_invalid_findscp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
202
diff
changeset
|
4386 self.assertEqual(0, len(re.findall('\(0002,0002\)', findscu))) |
|
208
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4387 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4388 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4389 def test_bitbucket_issue_90(self): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4390 def CountDicomResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4391 a = CallFindScu([ '-S', '-k', '8,52=STUDY', '-k', sex ]) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4392 return len(re.findall('\(0010,0040\)', a)) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4393 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4394 def CountRestResults(sex): |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4395 a = DoPost(_REMOTE, '/tools/find', |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4396 { 'Level' : 'Study', 'Query' : { 'PatientSex' : sex } }) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4397 return len(a) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4398 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4399 # Just like the "CR000000.dcm" of the issue, the test image |
|
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4400 # "DummyCT.dcm" has the tag PatientSex (0010,0040) unset |
|
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4401 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4402 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4403 # Test that the behavior of DICOM vs. REST API is consistent on missing tags |
|
2444c9a7c422
test_bitbucket_issue_90
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207
diff
changeset
|
4404 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4405 # In wildcard constraints, the patient sex must be set for a match to occur |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4406 self.assertEqual(0, CountDicomResults('PatientSex=*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4407 self.assertEqual(0, CountRestResults('*')) |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4408 |
|
2444c9a7c422
test_bitbucket_issue_90
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
207
diff
changeset
|
4409 # In single-valued constraints, the patient sex must be set |
|
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4410 self.assertEqual(0, CountDicomResults('PatientSex=F')) |
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4411 self.assertEqual(0, CountDicomResults('PatientSex=M')) |
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4412 self.assertEqual(0, CountRestResults('F')) |
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4413 self.assertEqual(0, CountRestResults('M')) |
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4414 |
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4415 # Empty constraints are only used to ask the actual value of |
|
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4416 # the tag to be added to the *answer*. The tag should not used |
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4417 # as a filter in such a situation. |
|
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4418 self.assertEqual(1, CountDicomResults('PatientSex')) |
|
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4419 self.assertEqual(1, CountDicomResults('PatientSex=')) |
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4420 self.assertEqual(1, CountRestResults('')) # This check fails on Orthanc <= 1.5.2 (issue 90) |
|
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4421 |
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4422 |
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4423 def test_rest_modalities_in_study(self): |
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4424 # Tests a regression that is present in Orthanc 1.5.2 and 1.5.3 |
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4425 # https://groups.google.com/d/msg/orthanc-users/7lZyG3wpx-M/uOXzAzVCFwAJ |
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4426 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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4427 |
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4428 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4429 'Query' : { 'ModalitiesInStudy' : 'US' }}) |
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4430 self.assertEqual(0, len(a)) |
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4431 |
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4432 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4433 'Query' : { 'ModalitiesInStudy' : 'US\\CT' }}) |
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4434 self.assertEqual(1, len(a)) |
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4435 |
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4436 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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4437 'Query' : { 'ModalitiesInStudy' : 'CT' }}) |
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4438 self.assertEqual(1, len(a)) |
| 211 | 4439 |
| 4440 | |
| 4441 def test_series_status(self): | |
| 4442 def HasCompletedInChanges(): | |
| 4443 for c in DoGet(_REMOTE, '/changes?limit=1000&since=0')['Changes']: | |
| 4444 if c['ChangeType'] == 'CompletedSeries': | |
| 4445 return True; | |
| 4446 | |
| 4447 return False | |
| 4448 | |
| 4449 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') | |
| 4450 series = '8ea120d7-5057d919-837dfbcc-ccd04e0f-7f3a94aa' | |
| 4451 self.assertEqual('Unknown', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4452 self.assertFalse(HasCompletedInChanges()) | |
| 4453 | |
| 4454 series = 'ce25ecb6-ed79d004-5ae43ca7-3fc89bc5-67511614' | |
| 4455 | |
| 4456 for i in range(3): | |
| 4457 UploadInstance(_REMOTE, 'Series/Lena-%d.dcm' % (i + 1)) | |
| 4458 self.assertEqual('Missing', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4459 self.assertFalse(HasCompletedInChanges()) | |
| 4460 | |
| 4461 UploadInstance(_REMOTE, 'Series/Lena-4.dcm') | |
| 4462 self.assertEqual('Complete', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4463 self.assertTrue(HasCompletedInChanges()) | |
| 4464 | |
| 4465 DoDelete(_REMOTE, '/changes') | |
| 4466 self.assertFalse(HasCompletedInChanges()) | |
| 4467 | |
| 4468 UploadInstance(_REMOTE, 'Series/Lena-5.dcm') | |
| 4469 self.assertEqual('Inconsistent', DoGet(_REMOTE, '/series/%s' % series)['Status']) | |
| 4470 self.assertFalse(HasCompletedInChanges()) | |
| 4471 | |
| 215 | 4472 |
| 4473 def test_dicomweb(self): | |
| 4474 def Compare(dicom, reference): | |
| 4475 a = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4476 b = DoGet(_REMOTE, '/instances/%s/file' % a, | |
| 4477 headers = { 'Accept' : 'application/dicom+json' }) | |
| 4478 with open(GetDatabasePath(reference), 'rb') as c: | |
| 4479 d = json.load(c) | |
| 220 | 4480 AssertAlmostEqualRecursive(self, d, b) |
| 215 | 4481 |
| 4482 Compare('DummyCT.dcm', 'DummyCT.json') | |
| 4483 Compare('MarekLatin2.dcm', 'MarekLatin2.json') | |
| 4484 Compare('HierarchicalAnonymization/StructuredReports/IM0', | |
| 4485 'HierarchicalAnonymization/StructuredReports/IM0.json') | |
| 217 | 4486 |
| 4487 | |
| 4488 def test_issue_95_encodings(self): | |
| 4489 # https://bitbucket.org/sjodogne/orthanc/issues/95/server-cant-support-chinese | |
| 4490 # Check out image: "../Database/Encodings/DavidClunie/charsettests.screenshot.png" | |
| 4491 | |
| 4492 # Very useful tool: "file2" from package "file-kanji" | |
| 4493 | |
| 4494 def GetPatientName(dicom): | |
| 4495 i = UploadInstance(_REMOTE, dicom) ['ID'] | |
| 4496 j = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 4497 return j['PatientName'] | |
| 4498 | |
| 4499 def ComparePatientName(name, dicom): | |
| 4500 self.assertEqual(name, GetPatientName(dicom)) | |
| 4501 | |
| 4502 # gdcmraw -t 10,10 -i SCSFREN -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4503 ComparePatientName(u'Buc^Jérôme', 'Encodings/DavidClunie/SCSFREN') | |
| 4504 | |
| 4505 # gdcmraw -t 10,10 -i SCSI2 -o /tmp/tag && uconv -f KOREAN -t UTF-8 /tmp/tag && echo | |
| 4506 ComparePatientName(u'Hong^Gildong=洪^吉洞=홍^길동', 'Encodings/DavidClunie/SCSI2') # Since Orthanc 1.5.5 | |
| 4507 | |
| 4508 # gdcmraw -t 10,10 -i SCSX2 -o /tmp/tag && uconv -f GB18030 -t UTF-8 /tmp/tag && echo | |
| 4509 ComparePatientName(u'Wang^XiaoDong=王^小东=', 'Encodings/DavidClunie/SCSX2') | |
| 4510 | |
| 4511 # gdcmraw -t 10,10 -i SCSX1 -o /tmp/tag && cat /tmp/tag && echo | |
| 4512 ComparePatientName(u'Wang^XiaoDong=王^小東=', 'Encodings/DavidClunie/SCSX1') | |
| 4513 | |
| 4514 # gdcmraw -t 10,10 -i SCSH31 -o /tmp/tag && uconv -f JIS -t UTF-8 /tmp/tag && echo | |
| 4515 ComparePatientName(u'Yamada^Tarou=山田^太郎=やまだ^たろう', 'Encodings/DavidClunie/SCSH31') | |
| 4516 | |
| 4517 # gdcmraw -t 10,10 -i SCSGERM -o /tmp/tag && uconv -f ISO-IR-100 -t UTF-8 /tmp/tag && echo | |
| 4518 ComparePatientName(u'Äneas^Rüdiger', 'Encodings/DavidClunie/SCSGERM') | |
| 4519 | |
| 4520 # gdcmraw -t 10,10 -i SCSGREEK -o /tmp/tag && uconv -f ISO-IR-126 -t UTF-8 /tmp/tag && echo | |
| 4521 ComparePatientName(u'Διονυσιος', 'Encodings/DavidClunie/SCSGREEK') | |
| 4522 | |
| 4523 # gdcmraw -t 10,10 -i SCSRUSS -o /tmp/tag && uconv -f ISO-IR-144 -t UTF-8 /tmp/tag && echo | |
| 4524 ComparePatientName(u'Люкceмбypг', 'Encodings/DavidClunie/SCSRUSS') | |
| 4525 | |
| 4526 # gdcmraw -t 10,10 -i SCSHBRW -o /tmp/tag && uconv -f ISO-IR-138 -t UTF-8 /tmp/tag && echo | |
| 4527 # NB: Hebrew is a right-to-left encoding, copying/pasting from | |
| 4528 # Linux console into Emacs automatically reverse the string | |
| 4529 ComparePatientName(u'שרון^דבורה', 'Encodings/DavidClunie/SCSHBRW') | |
| 4530 | |
| 4531 # gdcmraw -t 10,10 -i SCSARAB -o /tmp/tag && uconv -f ISO-IR-127 -t UTF-8 /tmp/tag && echo | |
| 4532 # NB: Right-to-left as for Hebrew (SCSHBRW), and the Ubuntu console can't display such | |
| 4533 # characters by default, but copy/paste works with Emacs | |
| 4534 ComparePatientName(u'قباني^لنزار', 'Encodings/DavidClunie/SCSARAB') | |
| 4535 | |
| 4536 # SCSH32: This SpecificCharacterSet is composed of 2 | |
| 4537 # codepages: "ISO 2022 IR 13" (i.e. "SHIFT_JIS") until the | |
| 4538 # first equal, then "ISO 2022 IR 87" (i.e. "JIS") for the | |
| 4539 # remainer. Orthanc only takes into consideration the first | |
| 4540 # codepage: This is a limitation. | |
| 4541 # gdcmraw -t 10,10 -i SCSH32 -o /tmp/tag && cut -d '=' -f 1 /tmp/tag | uconv -f SHIFT_JIS -t UTF-8 | |
| 4542 self.assertTrue(GetPatientName('Encodings/DavidClunie/SCSH32').startswith(u'ﾔﾏﾀﾞ^ﾀﾛｳ=')) | |
|
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4543 |
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4544 |
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|
4545 def test_findscu_missing_tags(self): |
|
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diff
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|
4546 # dcmodify -e Rows DummyCTInvalidRows.dcm -gst -gse -gin |
|
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|
4547 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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diff
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|
4548 UploadInstance(_REMOTE, 'DummyCTInvalidRows.dcm') |
|
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|
4549 |
|
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diff
changeset
|
4550 i = CallFindScu([ '-k', '0008,0052=IMAGES', '-k', 'Rows', '-k', 'PatientName' ]) |
|
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diff
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|
4551 |
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diff
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|
4552 # We have 2 instances... |
|
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diff
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|
4553 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
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diff
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|
4554 self.assertEqual(2, len(patientNames)) |
|
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diff
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|
4555 self.assertEqual('KNIX', patientNames[0]) |
|
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|
4556 self.assertEqual('KNIX', patientNames[1]) |
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|
4557 |
|
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diff
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|
4558 # ...but only 1 value for the "Rows" tag |
|
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|
4559 rows = re.findall('\(0028,0010\) US ([0-9]+)', i) |
|
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|
4560 self.assertEqual(1, len(rows)) |
|
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|
4561 self.assertEqual('512', rows[0]) |
|
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4562 |
|
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4563 |
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|
4564 |
|
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|
4565 def test_bitbucket_issue_131(self): |
|
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|
4566 # "Orthanc PACS silently fails to C-MOVE due to duplicate |
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4567 # StudyInstanceUID in it's database." |
|
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|
4568 # https://bitbucket.org/sjodogne/orthanc/issues/131/orthanc-pacs-silently-fails-to-c-move-due |
|
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|
4569 |
|
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diff
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|
4570 # Insert 2 instances, with the same StudyInstanceUID, but with |
|
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|
4571 # different patient IDs. Orthanc will create 2 distincts |
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|
4572 # patients, and the hierarchy of resources above the two |
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|
4573 # instances will be fully disjoint. |
|
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|
4574 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-a.dcm') |
|
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|
4575 UploadInstance(_REMOTE, 'PatientIdsCollision/Issue131-b.dcm') |
|
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4576 |
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|
4577 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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4578 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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4579 |
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|
4580 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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|
4581 'Level' : 'Study', |
|
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|
4582 'Query' : {"PatientID": "A" }})['ID'] |
|
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4583 |
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|
4584 # 1 study is matched |
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|
4585 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4586 |
|
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|
4587 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4588 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4589 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4590 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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|
4591 |
|
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|
4592 # The two studies are matched, as we made the request at the |
|
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|
4593 # Study level, thus the shared StudyInstanceUID is used as the key |
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|
4594 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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|
4595 |
|
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|
4596 |
|
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diff
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|
4597 # Match the 2 studies |
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4598 a = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4599 'Level' : 'Study', |
|
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4600 'Query' : {"StudyInstanceUID": "2.25.123" }})['ID'] |
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|
4601 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4602 DropOrthanc(_LOCAL) |
|
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|
4603 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4604 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4605 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4606 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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|
4607 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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|
4608 |
|
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|
4609 |
|
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|
4610 # Same test, at the patient level => only 1 instance is transfered |
|
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|
4611 a = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4612 'Level' : 'Patient', |
|
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4613 'Query' : {"PatientID": "A" }})['ID'] |
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|
4614 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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|
4615 DropOrthanc(_LOCAL) |
|
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diff
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|
4616 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4617 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4618 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4619 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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|
4620 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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|
4621 |
|
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diff
changeset
|
4622 |
|
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diff
changeset
|
4623 # Same test, at the series level => only 1 instance is transfered |
|
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|
4624 a = DoPost(_REMOTE, '/modalities/self/query', { |
|
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diff
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|
4625 'Level' : 'Series', |
|
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diff
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|
4626 'Query' : {"PatientID": "A" }})['ID'] |
|
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218
diff
changeset
|
4627 self.assertEqual(1, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) |
|
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218
diff
changeset
|
4628 DropOrthanc(_LOCAL) |
|
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diff
changeset
|
4629 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
| 220 | 4630 WaitAllNewJobsDone(_REMOTE, lambda: DoPost |
| 4631 (_REMOTE, '/queries/%s/retrieve' % a, | |
| 4632 '{"TargetAet":"ORTHANCTEST","Synchronous":false}')) | |
|
219
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diff
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|
4633 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
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218
diff
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|
4634 |
|
233
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231
diff
changeset
|
4635 |
|
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diff
changeset
|
4636 def test_bitbucket_issue_136(self): |
|
ce0b19a2c807
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231
diff
changeset
|
4637 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
ce0b19a2c807
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231
diff
changeset
|
4638 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0010,0010', '-k', '0028,0010', '-k', '0040,0275' ]) |
|
ce0b19a2c807
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231
diff
changeset
|
4639 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
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231
diff
changeset
|
4640 self.assertEqual(1, len(patientNames)) |
|
ce0b19a2c807
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231
diff
changeset
|
4641 self.assertEqual('John Doe', patientNames[0]) |
|
234
93cd4fdd4a67
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233
diff
changeset
|
4642 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4643 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4644 def test_anonymize_relationships_4(self): |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4645 # https://groups.google.com/d/msg/orthanc-users/UkcsqyTpszE/bXUpzU0vAAAJ |
|
93cd4fdd4a67
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233
diff
changeset
|
4646 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/CR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4647 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/2019-03-28/PR000000.dcm')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4648 study = '0c923249-d52121a9-2b7167f7-6b85534f-0943697e' |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4649 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4650 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, '{}', |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4651 'application/json')['ID'] |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4652 series = DoGet(_REMOTE, '/studies/%s/series' % anonymized) |
|
93cd4fdd4a67
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233
diff
changeset
|
4653 self.assertEqual(2, len(series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4654 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4655 cr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4656 pr = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'PR', series)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4657 self.assertEqual(1, len(cr)) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4658 self.assertEqual(1, len(pr)) |
|
93cd4fdd4a67
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233
diff
changeset
|
4659 self.assertEqual(1, len(cr[0]['Instances'])) |
|
93cd4fdd4a67
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diff
changeset
|
4660 self.assertEqual(1, len(pr[0]['Instances'])) |
|
93cd4fdd4a67
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233
diff
changeset
|
4661 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4662 crinstance = DoGet(_REMOTE, '/instances/%s' % cr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4663 tags = DoGet(_REMOTE, '/instances/%s/tags?short' % pr[0]['Instances'][0]) |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4664 |
|
93cd4fdd4a67
test_anonymize_relationships_4
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233
diff
changeset
|
4665 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1155'], |
|
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233
diff
changeset
|
4666 crinstance['MainDicomTags']['SOPInstanceUID']) |
|
93cd4fdd4a67
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233
diff
changeset
|
4667 self.assertEqual(tags['0008,1115'][0]['0008,1140'][0]['0008,1150'], |
|
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233
diff
changeset
|
4668 '1.2.840.10008.5.1.4.1.1.1') # SOP class for CR Image Storage |
|
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233
diff
changeset
|
4669 |
|
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233
diff
changeset
|
4670 # This fails on Orthanc <= 1.5.6 |
|
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diff
changeset
|
4671 self.assertEqual(tags['0008,1115'][0]['0020,000e'], |
|
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233
diff
changeset
|
4672 cr[0]['MainDicomTags']['SeriesInstanceUID']) |
|
235
9929e4af2b7a
test_bitbucket_issue_140
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234
diff
changeset
|
4673 |
|
9929e4af2b7a
test_bitbucket_issue_140
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234
diff
changeset
|
4674 |
|
255
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diff
changeset
|
4675 def test_anonymize_relationships_5(self): |
|
02c3d91b155c
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diff
changeset
|
4676 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') |
|
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254
diff
changeset
|
4677 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') |
|
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parents:
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diff
changeset
|
4678 oStudyId = ct1['ParentStudy'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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254
diff
changeset
|
4679 oCtInstanceId = ct1['ID'] |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4680 oRtInstanceId = rt1['ID'] |
|
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added anonymization test for RTH data (currently failing)
amazy
parents:
254
diff
changeset
|
4681 |
|
02c3d91b155c
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254
diff
changeset
|
4682 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) |
|
02c3d91b155c
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parents:
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diff
changeset
|
4683 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4684 |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4685 # first validate the relationships in the source data |
|
02c3d91b155c
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254
diff
changeset
|
4686 oStudyUID = oCtTags['StudyInstanceUID'] |
|
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diff
changeset
|
4687 oRtSeriesUID = oRtTags['SeriesInstanceUID'] |
|
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254
diff
changeset
|
4688 oRtInstanceUID = oRtTags['SOPInstanceUID'] |
|
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diff
changeset
|
4689 oRtFrameOfReferenceUID = oRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
|
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diff
changeset
|
4690 oCtSeriesUID = oCtTags['SeriesInstanceUID'] |
|
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254
diff
changeset
|
4691 oCtInstanceUID = oCtTags['SOPInstanceUID'] |
|
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diff
changeset
|
4692 oCtFrameOfReferenceUID = oCtTags['FrameOfReferenceUID'] |
|
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added anonymization test for RTH data (currently failing)
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254
diff
changeset
|
4693 |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
254
diff
changeset
|
4694 oContourSequenceCount = len(oRtTags['ROIContourSequence'][0]['ContourSequence']) |
|
02c3d91b155c
added anonymization test for RTH data (currently failing)
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parents:
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diff
changeset
|
4695 self.assertEqual(oCtFrameOfReferenceUID, oRtFrameOfReferenceUID) |
|
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added anonymization test for RTH data (currently failing)
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diff
changeset
|
4696 self.assertEqual(oStudyUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
|
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4697 self.assertEqual(oCtSeriesUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) |
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4698 self.assertEqual(oCtInstanceUID, oRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4699 self.assertEqual(oCtInstanceUID, oRtTags['ROIContourSequence'][0]['ContourSequence'][oContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4700 |
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4701 ### anonymize |
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4702 |
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4703 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{}', |
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4704 'application/json')['ID'] |
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4705 |
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4706 ### validate |
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4707 |
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4708 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) |
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4709 self.assertEqual(2, len(aSeries)) |
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4710 |
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4711 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) |
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4712 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) |
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4713 aCtInstanceId = aCt[0]['Instances'][0] |
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4714 aRtInstanceId = aRt[0]['Instances'][0] |
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4715 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) |
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4716 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) |
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4717 |
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4718 # now validate the relationships in the anonymized data |
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4719 aStudyUID = aCtTags['StudyInstanceUID'] |
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4720 aRtSeriesUID = aRtTags['SeriesInstanceUID'] |
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4721 aRtInstanceUID = aRtTags['SOPInstanceUID'] |
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4722 aRtFrameOfReferenceUID = aRtTags['ReferencedFrameOfReferenceSequence'][0]['FrameOfReferenceUID'] |
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4723 aCtSeriesUID = aCtTags['SeriesInstanceUID'] |
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4724 aCtInstanceUID = aCtTags['SOPInstanceUID'] |
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4725 aCtFrameOfReferenceUID = aCtTags['FrameOfReferenceUID'] |
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4726 |
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4727 aContourSequenceCount = len(aRtTags['ROIContourSequence'][0]['ContourSequence']) |
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4728 # make sure all UIDs have been updated |
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4729 self.assertNotEqual(oStudyUID, aStudyUID) |
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4730 self.assertNotEqual(oRtSeriesUID, aRtSeriesUID) |
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4731 self.assertNotEqual(oRtInstanceUID, aRtInstanceUID) |
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4732 self.assertNotEqual(oRtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
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4733 self.assertNotEqual(oCtSeriesUID, aCtSeriesUID) |
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4734 self.assertNotEqual(oCtInstanceUID, aCtInstanceUID) |
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4735 self.assertNotEqual(oCtFrameOfReferenceUID, aCtFrameOfReferenceUID) |
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4736 |
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4737 # validate the relationships |
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4738 self.assertEqual(oContourSequenceCount, aContourSequenceCount) |
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4739 self.assertEqual(aCtFrameOfReferenceUID, aRtFrameOfReferenceUID) |
| 256 | 4740 self.assertEqual(aStudyUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) |
| 4741 self.assertEqual(aCtSeriesUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['SeriesInstanceUID']) | |
|
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4742 self.assertEqual(aCtInstanceUID, aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['RTReferencedSeriesSequence'][0]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4743 self.assertEqual(aCtInstanceUID, aRtTags['ROIContourSequence'][0]['ContourSequence'][aContourSequenceCount-1]['ContourImageSequence'][0]['ReferencedSOPInstanceUID']) |
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4744 |
| 256 | 4745 def test_anonymize_relationships_5b(self): |
| 4746 # same test as previous one but, this time, we force the StudyInstanceUID | |
| 4747 ct1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/CT01.dcm') | |
| 4748 rt1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/RTH/RT.dcm') | |
| 4749 oStudyId = ct1['ParentStudy'] | |
| 4750 oCtInstanceId = ct1['ID'] | |
| 4751 oRtInstanceId = rt1['ID'] | |
| 4752 | |
| 4753 oCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oCtInstanceId) | |
| 4754 oRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % oRtInstanceId) | |
| 4755 | |
| 4756 ### anonymize while forcing the StudyInstanceUID | |
| 4757 | |
| 4758 aStudyId = DoPost(_REMOTE, '/studies/%s/anonymize' % oStudyId, '{ "Replace" : { "StudyInstanceUID" : "1.2.3.4"}, "Force": true}', | |
| 4759 'application/json')['ID'] | |
| 4760 | |
| 4761 ### validate | |
| 4762 | |
| 4763 aSeries = DoGet(_REMOTE, '/studies/%s/series' % aStudyId) | |
| 4764 self.assertEqual(2, len(aSeries)) | |
| 4765 | |
| 4766 aCt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'CT', aSeries)) | |
| 4767 aRt = list(filter(lambda x: x['MainDicomTags']['Modality'] == 'RTSTRUCT', aSeries)) | |
| 4768 aCtInstanceId = aCt[0]['Instances'][0] | |
| 4769 aRtInstanceId = aRt[0]['Instances'][0] | |
| 4770 aCtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aCtInstanceId) | |
| 4771 aRtTags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % aRtInstanceId) | |
| 4772 | |
| 4773 self.assertEqual("1.2.3.4", aCtTags['StudyInstanceUID']) | |
| 4774 self.assertEqual("1.2.3.4", aRtTags['StudyInstanceUID']) | |
| 4775 self.assertEqual("1.2.3.4", aRtTags['ReferencedFrameOfReferenceSequence'][0]['RTReferencedStudySequence'][0]['ReferencedSOPInstanceUID']) | |
|
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4776 |
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4777 |
|
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4778 def test_bitbucket_issue_140(self): |
| 266 | 4779 # "Modifying private tags with REST API changes VR from LO to |
| 267 | 4780 # UN." This test fails if DCMTK <= 3.6.1 (e.g. fails on Ubuntu 16.04). |
| 266 | 4781 # https://bitbucket.org/sjodogne/orthanc/issues/140 |
|
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4782 source = UploadInstance(_REMOTE, 'Issue140.dcm') ['ID'] |
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4783 series = DoGet(_REMOTE, '/instances/%s' % source) ['ParentSeries'] |
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4784 |
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4785 target = DoPost(_REMOTE, '/series/%s/modify' % series, { |
| 266 | 4786 'Replace' : { 'RadioButton3' : 'aaabbbccc' }, |
| 4787 'PrivateCreator' : 'RadioLogic', # <= the trick is here | |
|
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4788 }, 'application/json') ['ID'] |
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4789 |
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4790 instances = DoGet(_REMOTE, '/series/%s/instances' % target) |
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4791 self.assertEqual(1, len(instances)) |
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4792 |
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4793 tags = DoGet(_REMOTE, '/instances/%s/tags' % source) |
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4794 t = tags['4321,1012'] |
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4795 self.assertEqual('String', t['Type']) |
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4796 self.assertEqual('RadioButton3', t['Name']) |
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4797 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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|
4798 self.assertEqual('jklmopq', t['Value']) |
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4799 |
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4800 tags = DoGet(_REMOTE, '/instances/%s/tags' % instances[0]['ID']) |
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4801 t = tags['4321,1012'] |
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4802 self.assertEqual('String', t['Type']) |
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4803 self.assertEqual('RadioButton3', t['Name']) |
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4804 self.assertEqual('RadioLogic', t['PrivateCreator']) |
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4805 self.assertEqual('aaabbbccc', t['Value']) |
|
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4806 |
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4807 |
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4808 def test_find_normalize(self): |
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4809 # https://groups.google.com/d/msg/orthanc-users/AIwooGjsh94/YL28MNY4AgAJ |
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4810 |
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|
4811 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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4812 |
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4813 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4814 'Level' : 'Instance', |
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4815 'Query' : { 'Rows' : '42' } |
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4816 }) ['ID'] |
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4817 |
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4818 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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4819 self.assertEqual(1, len(b)) |
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4820 self.assertFalse('Rows' in b[0]) |
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4821 |
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4822 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4823 'Level' : 'Instance', |
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4824 'Query' : { 'Rows' : '42' }, |
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4825 'Normalize' : False |
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4826 }) ['ID'] |
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4827 |
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4828 b = DoGet(_REMOTE, '/queries/%s/answers' % a) |
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4829 self.assertEqual(0, len(b)) |
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4830 |
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4831 a = DoPost(_REMOTE, '/modalities/self/query', { |
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4832 'Level' : 'Instance', |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4833 'Query' : { 'Rows' : '512' }, |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4834 'Normalize' : False |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4835 }) ['ID'] |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4836 |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4837 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4838 self.assertEqual(1, len(b)) |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4839 self.assertTrue('Rows' in b[0]) |
|
2de1aec255ae
test_find_normalize
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
235
diff
changeset
|
4840 self.assertEqual('512', b[0]['Rows']) |
| 237 | 4841 |
| 4842 a = DoPost(_REMOTE, '/modalities/self/query', { | |
| 4843 'Level' : 'Instance', | |
| 4844 'Query' : { 'Rows' : '' }, | |
| 4845 'Normalize' : False | |
| 4846 }) ['ID'] | |
| 4847 | |
| 4848 b = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) | |
| 4849 self.assertEqual(1, len(b)) | |
| 4850 self.assertTrue('Rows' in b[0]) | |
| 4851 self.assertEqual('512', b[0]['Rows']) | |
| 4852 | |
| 4853 self.assertRaises(Exception, lambda: DoPost( | |
| 4854 _REMOTE, '/modalities/self/query', { | |
| 4855 'Level' : 'Instance', | |
| 4856 'Query' : { 'Rows' : '*' }, # Out-of-range value | |
| 4857 'Normalize' : False | |
| 4858 })) | |
|
243
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4859 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4860 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4861 def test_bitbucket_issue_141(self): |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4862 # https://bitbucket.org/sjodogne/orthanc/issues/141/ |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4863 a = UploadInstance(_REMOTE, 'Issue141.dcm') ['ID'] |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4864 study = '494c8037-b237f263-d8f15075-c8cb2280-daf39bd1' |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4865 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4866 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4867 pdf = f.read() |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4868 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4869 b = DoPost(_REMOTE, '/tools/create-dicom', { |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4870 'Parent' : study, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4871 'Tags' : {}, |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4872 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4873 }) ['ID'] |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4874 |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4875 tagsA = DoGet(_REMOTE, '/instances/%s/tags?short' % a) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4876 tagsB = DoGet(_REMOTE, '/instances/%s/tags?short' % b) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4877 self.assertEqual(tagsA['0008,0005'], tagsB['0008,0005']) |
|
cccf697a4e13
test_bitbucket_issue_141
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
237
diff
changeset
|
4878 self.assertEqual(tagsA['0008,1030'], tagsB['0008,1030']) |
|
247
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4879 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4880 |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4881 def test_modifying_missing_patientid(self): |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4882 # https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4883 UploadInstance(_REMOTE, '2019-06-17-VedranZdesic.dcm') |
|
1abdab0ba0e6
test_modifying_missing_patientid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
243
diff
changeset
|
4884 DoPost(_REMOTE, '/studies/0c4aca1d-c107a241-6659d6aa-594c674a-a468b94a/modify', {}) |
| 262 | 4885 |
| 4886 | |
| 4887 def test_log_level(self): | |
| 4888 # https://bitbucket.org/sjodogne/orthanc/issues/65/ | |
| 4889 original = DoGet(_REMOTE, '/tools/log-level') | |
| 4890 | |
| 4891 DoPut(_REMOTE, '/tools/log-level', 'default') | |
| 4892 self.assertEqual('default', DoGet(_REMOTE, '/tools/log-level')) | |
| 4893 DoGet(_REMOTE, '/system') | |
| 4894 | |
| 4895 DoPut(_REMOTE, '/tools/log-level', 'verbose') | |
| 4896 self.assertEqual('verbose', DoGet(_REMOTE, '/tools/log-level')) | |
| 4897 DoGet(_REMOTE, '/system') | |
| 4898 | |
| 4899 DoPut(_REMOTE, '/tools/log-level', 'trace') | |
| 4900 self.assertEqual('trace', DoGet(_REMOTE, '/tools/log-level')) | |
| 4901 DoGet(_REMOTE, '/system') | |
| 4902 | |
| 4903 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/log-level', 'nope')) | |
| 4904 | |
| 4905 # Switch back to the original log level | |
| 4906 DoPut(_REMOTE, '/tools/log-level', original) | |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4907 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4908 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4909 def test_upload_compressed(self): |
| 265 | 4910 # New in Orthanc 1.6.0 |
|
264
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4911 with open(GetDatabasePath('DummyCT.dcm.gz'), 'rb') as f: |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4912 d = f.read() |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4913 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4914 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom')) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4915 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4916 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4917 headers = { 'Content-Encoding' : 'nope' })) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4918 |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4919 a = DoPost(_REMOTE, '/instances', d, 'application/dicom', |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4920 headers = { 'Content-Encoding' : 'gzip' }) |
|
445f498bc1d4
test_upload_compressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
263
diff
changeset
|
4921 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a['ID']) |
| 262 | 4922 |
| 4923 | |
|
263
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4924 def test_study_series_find_inconsistency(self): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4925 # https://groups.google.com/forum/#!topic/orthanc-users/bLv6Z11COy0 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4926 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4927 def CountAnswers(query): |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4928 a = DoPost(_REMOTE, 'modalities/self/query', query) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4929 return len(DoGet(_REMOTE, '%s/answers' % a['Path'])) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4930 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4931 # This instance has "SeriesDescription" (0008,103e) tag, but no |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4932 # "ProtocolName" (0018,1030). Both of those tags are part of |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4933 # the "main DICOM tags" of Orthanc. |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4934 UploadInstance(_REMOTE, 'Issue137.dcm') |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4935 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4936 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4937 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4938 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4939 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4940 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4941 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4942 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4943 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4944 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4945 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4946 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4947 ## "SeriesDescription" is present, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4948 ## http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4949 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4950 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4951 # At the study level, the "SeriesDescription" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4952 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4953 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4954 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4955 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4956 'SeriesDescription' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4957 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4958 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4959 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4960 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4961 # This test fails on Orthanc <= 1.5.8 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4962 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4963 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4964 'SeriesDescription' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4965 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4966 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4967 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4968 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4969 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4970 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4971 'SeriesDescription' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4972 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4973 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4974 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4975 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4976 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4977 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4978 'SeriesDescription' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4979 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4980 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4981 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4982 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4983 for normalize in [ True, False ]: |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4984 # At the series level, the "SeriesDescription" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4985 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4986 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4987 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4988 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4989 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4990 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4991 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4992 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4993 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4994 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4995 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4996 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4997 # "Universal matching" will match all entities, including |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4998 # those with the missing tag |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
4999 # http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.3.html |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5000 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5001 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5002 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5003 'SeriesDescription' : '*' # Wildcard matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5004 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5005 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5006 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5007 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5008 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5009 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5010 'SeriesDescription' : '*model*' # The actual value is "STL model: intraop Report" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5011 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5012 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5013 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5014 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5015 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5016 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5017 'SeriesDescription' : '*MISMATCHED^VALUE*' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5018 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5019 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5020 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5021 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5022 # Universal matching matches any instance, even if the |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5023 # query is at the study-level, and thus if "SeriesDescription" |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5024 # makes no sense |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5025 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5026 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5027 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5028 'SeriesDescription' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5029 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5030 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5031 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5032 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5033 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5034 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5035 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5036 ## "ProtocolName" is absent, and has VR "CS" => wildcard is allowed |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5037 ## |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5038 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5039 # At the study level, the "ProtocolName" tag is not allowed, but |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5040 # is wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5041 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5042 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5043 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5044 'ProtocolName' : 'NOPE' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5045 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5046 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5047 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5048 self.assertEqual(0, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5049 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5050 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5051 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5052 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5053 'Normalize' : False |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5054 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5055 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5056 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5057 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5058 'ProtocolName' : 'THIS^VALUE^IS^WIPED^OUT' |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5059 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5060 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5061 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5062 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5063 'Level' : 'Study', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5064 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5065 'ProtocolName' : '*' # Matches, as wiped out by the normalization |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5066 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5067 'Normalize' : True |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5068 })) |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5069 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5070 for normalize in [ True, False ]: |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5071 # At the series level, the "ProtocolName" tag is allowed, and |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5072 # normalization has no effect |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5073 |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5074 self.assertEqual(1, CountAnswers({ |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5075 'Level' : 'Series', |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5076 'Query' : { |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5077 'ProtocolName' : '' # Universal matching |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5078 }, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5079 'Normalize' : normalize, |
|
a2719263fd04
test_study_series_find_inconsistency
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
262
diff
changeset
|
5080 })) |
|
a2719263fd04
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5081 self.assertEqual(0, CountAnswers({ |
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5082 'Level' : 'Series', |
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5083 'Query' : { |
|
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5084 'ProtocolName' : '*' # Wildcard matching => no match, as the tag is absent |
|
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5085 }, |
|
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5086 'Normalize' : normalize, |
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5087 })) |
|
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5088 self.assertEqual(0, CountAnswers({ |
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5089 'Level' : 'Series', |
|
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5090 'Query' : { |
|
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5091 'ProtocolName' : '*MISMATCHED^VALUE*' |
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5092 }, |
|
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|
5093 'Normalize' : normalize, |
|
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|
5094 })) |
|
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|
5095 |
|
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|
5096 self.assertEqual(1, CountAnswers({ |
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5097 'Level' : 'Study', |
|
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5098 'Query' : { |
|
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5099 'ProtocolName' : '' # Universal matching |
|
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5100 }, |
|
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|
5101 'Normalize' : normalize, |
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5102 })) |
|
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|
5103 |
|
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|
5104 |
|
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5105 ## |
|
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5106 ## "StudyInstanceUID" is present, and has VR "UI" => wildcard is not allowed |
|
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5107 ## |
|
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5108 |
|
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5109 for level in [ 'Study', 'Series' ] : |
|
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5110 for normalize in [ True, False ]: |
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5111 self.assertEqual(1, CountAnswers({ |
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5112 'Level' : level, |
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5113 'Query' : { |
|
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5114 'StudyInstanceUID' : '' # Universal matching |
|
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5115 }, |
|
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|
5116 'Normalize' : normalize, |
|
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5117 })) |
|
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5118 self.assertEqual(0, CountAnswers({ |
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5119 'Level' : level, |
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5120 'Query' : { |
|
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5121 'StudyInstanceUID' : 'MISMATCHED^VALUE' |
|
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5122 }, |
|
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|
5123 'Normalize' : normalize, |
|
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|
5124 })) |
|
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|
5125 self.assertEqual(1, CountAnswers({ |
|
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5126 'Level' : level, |
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|
5127 'Query' : { |
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5128 'StudyInstanceUID' : '4.5.6' # This is the actual value |
|
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5129 }, |
|
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|
5130 'Normalize' : normalize, |
|
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|
5131 })) |
|
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5132 |
| 269 | 5133 # Wildcard matching is not allowed for this VR |
|
263
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|
5134 # This test fails on Orthanc <= 1.5.8 |
| 269 | 5135 self.assertRaises(Exception, lambda: CountAnswers({ |
|
263
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5136 'Level' : level, |
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|
5137 'Query' : { |
| 269 | 5138 'StudyInstanceUID' : '*' |
|
263
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|
5139 }, |
|
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|
5140 'Normalize' : normalize, |
|
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|
5141 })) |
| 265 | 5142 |
| 5143 | |
| 5144 def test_rendered(self): | |
| 5145 # New in Orthanc 1.6.0 | |
| 5146 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 5147 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5148 self.assertEqual("RGB", im.mode) | |
| 5149 self.assertEqual(41, im.size[0]) | |
| 5150 self.assertEqual(41, im.size[1]) | |
| 5151 | |
| 5152 # http://effbot.org/zone/pil-comparing-images.htm | |
| 5153 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) | |
| 5154 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) | |
| 5155 | |
| 5156 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10' % i) | |
| 5157 self.assertEqual("RGB", im.mode) | |
| 5158 self.assertEqual(10, im.size[0]) | |
| 5159 self.assertEqual(10, im.size[1]) | |
| 5160 | |
| 5161 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10' % i) | |
| 5162 self.assertEqual("RGB", im.mode) | |
| 5163 self.assertEqual(10, im.size[0]) | |
| 5164 self.assertEqual(10, im.size[1]) | |
| 5165 | |
| 5166 im = GetImage(_REMOTE, '/instances/%s/rendered?height=128' % i) | |
| 5167 self.assertEqual("RGB", im.mode) | |
| 5168 self.assertEqual(128, im.size[0]) | |
| 5169 self.assertEqual(128, im.size[1]) | |
| 5170 | |
| 5171 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=0' % i) | |
| 5172 self.assertEqual("RGB", im.mode) | |
| 5173 self.assertEqual(10, im.size[0]) | |
| 5174 self.assertEqual(10, im.size[1]) | |
| 5175 | |
| 5176 im = GetImage(_REMOTE, '/instances/%s/rendered?height=10&smooth=1' % i) | |
| 5177 self.assertEqual("RGB", im.mode) | |
| 5178 self.assertEqual(10, im.size[0]) | |
| 5179 self.assertEqual(10, im.size[1]) | |
| 5180 | |
| 5181 im = GetImage(_REMOTE, '/instances/%s/rendered?height=5&width=10' % i) | |
| 5182 self.assertEqual("RGB", im.mode) | |
| 5183 self.assertEqual(5, im.size[0]) | |
| 5184 self.assertEqual(5, im.size[1]) | |
| 5185 | |
| 5186 | |
| 5187 # Grayscale image | |
| 5188 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 5189 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5190 self.assertEqual("L", im.mode) | |
| 5191 self.assertEqual(288, im.size[0]) | |
| 5192 self.assertEqual(288, im.size[1]) | |
| 5193 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5194 | |
| 5195 # Those are the original windowing parameters that are written | |
| 5196 # inside the DICOM file | |
| 5197 im2 = GetImage(_REMOTE, '/instances/%s/rendered?window-center=248.009544468547&window-width=431.351843817788' % i) | |
| 5198 self.assertEqual("L", im2.mode) | |
| 5199 self.assertEqual(288, im2.size[0]) | |
| 5200 self.assertEqual(288, im2.size[1]) | |
| 5201 self.assertTrue(ImageChops.difference(im, im2).getbbox() is None) | |
| 5202 | |
| 5203 im = GetImage(_REMOTE, '/instances/%s/rendered?width=512&smooth=0' % i) | |
| 5204 self.assertEqual("L", im.mode) | |
| 5205 self.assertEqual(512, im.size[0]) | |
| 5206 self.assertEqual(512, im.size[1]) | |
| 5207 | |
| 5208 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=0' % i) | |
| 5209 self.assertEqual("L", im.mode) | |
| 5210 self.assertEqual(10, im.size[0]) | |
| 5211 self.assertEqual(10, im.size[1]) | |
| 5212 | |
| 5213 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&smooth=1' % i) | |
| 5214 self.assertEqual("L", im.mode) | |
| 5215 self.assertEqual(10, im.size[0]) | |
| 5216 self.assertEqual(10, im.size[1]) | |
| 5217 | |
| 5218 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=-1000' % i) | |
| 5219 self.assertEqual("L", im.mode) | |
| 5220 self.assertEqual(1, im.size[0]) | |
| 5221 self.assertEqual(1, im.size[1]) | |
| 5222 self.assertEqual(255, im.getpixel((0, 0))) | |
| 5223 | |
| 5224 im = GetImage(_REMOTE, '/instances/%s/rendered?width=1&window-center=1000' % i) | |
| 5225 self.assertEqual("L", im.mode) | |
| 5226 self.assertEqual(1, im.size[0]) | |
| 5227 self.assertEqual(1, im.size[1]) | |
| 5228 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5229 | |
| 5230 | |
| 5231 # Test monochrome 1 | |
| 5232 i = UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')['ID'] | |
| 5233 im = GetImage(_REMOTE, '/instances/%s/rendered' % i) | |
| 5234 self.assertEqual("L", im.mode) | |
| 5235 self.assertEqual(2010, im.size[0]) | |
| 5236 self.assertEqual(2446, im.size[1]) | |
| 5237 self.assertEqual(0, im.getpixel((0, 0))) | |
| 5238 im = GetImage(_REMOTE, '/instances/%s/rendered?width=20' % i) | |
| 5239 self.assertEqual("L", im.mode) | |
| 5240 self.assertEqual(20, im.size[0]) | |
| 5241 self.assertEqual(24, im.size[1]) | |
| 5242 im = GetImage(_REMOTE, '/instances/%s/rendered?height=24' % i) | |
| 5243 self.assertEqual("L", im.mode) | |
| 5244 self.assertEqual(20, im.size[0]) | |
| 5245 self.assertEqual(24, im.size[1]) | |
| 5246 im = GetImage(_REMOTE, '/instances/%s/rendered?width=10&height=24' % i) | |
| 5247 self.assertEqual("L", im.mode) | |
| 5248 self.assertEqual(10, im.size[0]) | |
| 5249 self.assertEqual(12, im.size[1]) | |
| 5250 im = GetImage(_REMOTE, '/instances/%s/rendered?width=40&height=24' % i) | |
| 5251 self.assertEqual("L", im.mode) | |
| 5252 self.assertEqual(20, im.size[0]) | |
| 5253 self.assertEqual(24, im.size[1]) | |
|
268
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5254 |
|
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|
5255 |
|
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|
5256 def test_bitbucket_issue_154(self): |
|
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5257 # "Matching against list of UID-s by C-MOVE" |
|
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|
5258 # https://bitbucket.org/sjodogne/orthanc/issues/154/ |
|
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|
5259 a = UploadInstance(_REMOTE, 'Issue154-d1.dcm') ['ID'] |
|
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|
5260 b = UploadInstance(_REMOTE, 'Issue154-d2.dcm') ['ID'] |
|
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|
5261 |
|
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|
5262 study = '1.2.826.0.1.3680043.8.498.35214236271657363033644818354280454731' |
|
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|
5263 series1 = '1.2.826.0.1.3680043.8.498.12243321927795467590791662266352305113' |
|
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|
5264 series2 = '1.2.826.0.1.3680043.8.498.43769499931624584079690260699536473555' |
|
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|
5265 |
|
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|
5266 # C-FIND is working on list of UIDs |
|
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|
5267 i = CallFindScu([ '-k', 'QueryRetrieveLevel=SERIES', |
|
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|
5268 '-k', 'StudyInstanceUID=%s' % study, |
|
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|
5269 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2) ]) |
|
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|
5270 series = re.findall('\(0020,000e\).*?\[(.*?)\]', i) |
|
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|
5271 self.assertEqual(2, len(series)) |
|
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|
5272 self.assertTrue(series1 in series) |
|
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5273 self.assertTrue(series2 in series) |
|
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5274 |
|
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5275 # Individual retrieval is working in Orthanc < 1.6.0 |
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5276 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5277 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
|
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5278 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5279 '-k', 'StudyInstanceUID=%s' % study, |
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5280 '-k', 'SeriesInstanceUID=%s' % series1, |
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5281 ]))) |
|
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5282 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5283 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5284 '-k', 'StudyInstanceUID=%s' % study, |
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5285 '-k', 'SeriesInstanceUID=%s' % series2, |
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5286 ]))) |
|
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5287 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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5288 |
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5289 DropOrthanc(_LOCAL) |
|
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5290 |
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5291 # But list matching is working only in Orthanc >= 1.6.0 |
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5292 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5293 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
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5294 '--study', '-k', 'QueryRetrieveLevel=SERIES', |
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5295 '-k', 'StudyInstanceUID=%s' % study, |
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5296 '-k', 'SeriesInstanceUID=%s\\%s' % (series1, series2), |
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5297 ]))) |
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5298 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
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5299 |
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5300 |
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5301 def test_storage_commitment_api(self): |
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5302 # Storage commitment is available since Orthanc 1.6.0 |
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5303 |
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5304 def WaitTransaction(uid): |
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5305 while True: |
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5306 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5307 if s['Status'] != 'Pending': |
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5308 return s |
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5309 else: |
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|
5310 time.sleep(0.1) |
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5311 |
| 281 | 5312 instance = UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
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5313 sopClassUid = '1.2.840.10008.5.1.4.1.1.4' |
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5314 sopInstanceUid = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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5315 |
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5316 # Against self |
| 281 | 5317 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5318 "DicomInstances" : [ [ sopClassUid, sopInstanceUid ] ], | |
| 5319 }) ['ID'] | |
|
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5320 self.assertTrue(transaction.startswith('2.25.')) |
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5321 |
|
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5322 result = WaitTransaction(transaction) |
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5323 self.assertEqual('ORTHANC', result['RemoteAET']) |
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5324 self.assertEqual('Success', result['Status']) |
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5325 self.assertEqual(1, len(result['Success'])) |
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|
5326 self.assertEqual(0, len(result['Failures'])) |
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|
5327 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5328 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5329 |
| 281 | 5330 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5331 "DicomInstances" : [ | |
| 5332 { 'SOPClassUID' : sopClassUid, | |
| 5333 'SOPInstanceUID' : sopInstanceUid }, | |
| 5334 ], | |
| 5335 }) | |
| 5336 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) | |
| 5337 self.assertEqual(result, WaitTransaction(transaction)) | |
| 5338 | |
| 5339 tmp = DoPost(_REMOTE, '/modalities/self/storage-commitment', { | |
| 5340 "Resources" : [ | |
| 5341 instance['ID'], | |
| 5342 instance['ParentSeries'], | |
| 5343 instance['ParentStudy'], | |
| 5344 instance['ParentPatient'], | |
| 5345 ] | |
| 5346 }) | |
|
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5347 self.assertEqual(tmp['Path'], '/storage-commitment/%s' % tmp['ID']) |
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|
5348 self.assertEqual(result, WaitTransaction(transaction)) |
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|
5349 |
|
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|
5350 |
| 281 | 5351 transaction = DoPost(_REMOTE, '/modalities/self/storage-commitment', { |
| 5352 "DicomInstances" : [ | |
| 5353 [ 'nope', 'nope2' ], | |
| 5354 [ sopClassUid, sopInstanceUid ], | |
| 5355 ], | |
| 5356 }) ['ID'] | |
|
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|
5357 self.assertTrue(transaction.startswith('2.25.')) |
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|
5358 |
|
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|
5359 result = WaitTransaction(transaction) |
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|
5360 self.assertEqual('ORTHANC', result['RemoteAET']) |
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|
5361 self.assertEqual('Failure', result['Status']) |
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|
5362 self.assertEqual(1, len(result['Success'])) |
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|
5363 self.assertEqual(1, len(result['Failures'])) |
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|
5364 self.assertEqual(sopClassUid, result['Success'][0]['SOPClassUID']) |
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|
5365 self.assertEqual(sopInstanceUid, result['Success'][0]['SOPInstanceUID']) |
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|
5366 self.assertEqual('nope', result['Failures'][0]['SOPClassUID']) |
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|
5367 self.assertEqual('nope2', result['Failures'][0]['SOPInstanceUID']) |
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|
5368 self.assertEqual(274, result['Failures'][0]['FailureReason']) |
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|
5369 |
|
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|
5370 # Cannot remove items from a failed storage commitment transaction |
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|
5371 self.assertRaises(Exception, lambda: |
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|
5372 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction)) |
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|
5373 |
|
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|
5374 |
|
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|
5375 # Against Orthanc 0.8.6, that does not support storage commitment |
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|
5376 self.assertRaises(Exception, lambda: |
| 281 | 5377 DoPost(_REMOTE, '/modalities/orthanctest/storage-commitment', { |
| 5378 "DicomInstances" : [ | |
| 5379 [ sopClassUid, sopInstanceUid ], | |
| 5380 ] | |
| 5381 })) | |
|
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5382 |
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|
5383 |
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|
5384 |
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|
5385 def test_storage_commitment_store(self): |
|
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5386 # Storage commitment is available since Orthanc 1.6.0 |
|
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|
5387 |
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|
5388 def WaitTransaction(uid): |
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5389 while True: |
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5390 s = DoGet(_REMOTE, '/storage-commitment/%s' % uid) |
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5391 if s['Status'] != 'Pending': |
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|
5392 return s |
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5393 else: |
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|
5394 time.sleep(0.1) |
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|
5395 |
|
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5396 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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5397 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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5398 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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5399 |
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5400 # The Orthanc 0.8.6 from "_LOCAL" does not support storage commitment |
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5401 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5402 'Resources' : [ i ], |
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5403 'StorageCommitment' : True, |
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5404 })) |
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5405 |
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5406 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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5407 'Resources' : [ i ], |
|
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starting tests for storage commitment
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diff
changeset
|
5408 'StorageCommitment' : False, |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5409 }) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5410 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5411 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5412 j = DoPost(_REMOTE, '/modalities/self/store', { |
|
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5413 'Resources' : [ i ], |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
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269
diff
changeset
|
5414 'StorageCommitment' : True, |
|
31e1e49df380
starting tests for storage commitment
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parents:
269
diff
changeset
|
5415 }) |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5416 |
|
31e1e49df380
starting tests for storage commitment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
269
diff
changeset
|
5417 transaction = j['StorageCommitmentTransactionUID'] |
|
31e1e49df380
starting tests for storage commitment
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269
diff
changeset
|
5418 self.assertTrue(transaction.startswith('2.25.')) |
|
280
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5419 |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5420 result = WaitTransaction(transaction) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
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279
diff
changeset
|
5421 self.assertEqual('ORTHANC', result['RemoteAET']) |
|
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testing storage commitment reports
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279
diff
changeset
|
5422 self.assertEqual('Success', result['Status']) |
|
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testing storage commitment reports
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279
diff
changeset
|
5423 self.assertEqual(1, len(result['Success'])) |
|
5daa3896981c
testing storage commitment reports
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279
diff
changeset
|
5424 self.assertEqual(0, len(result['Failures'])) |
|
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testing storage commitment reports
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279
diff
changeset
|
5425 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', result['Success'][0]['SOPClassUID']) |
|
5daa3896981c
testing storage commitment reports
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diff
changeset
|
5426 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5427 result['Success'][0]['SOPInstanceUID']) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5428 |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5429 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5430 DoPost(_REMOTE, '/storage-commitment/%s/remove' % transaction) |
|
5daa3896981c
testing storage commitment reports
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
279
diff
changeset
|
5431 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
285
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5432 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5433 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5434 def test_store_straight(self): # New in Orthanc 1.6.1 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5435 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5436 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5437 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5438 with open(GetDatabasePath('DummyCT.dcm'), 'rb') as f: |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5439 dicom = f.read() |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5440 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5441 self.assertRaises(Exception, lambda: DoPost( |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5442 _REMOTE, '/modalities/orthanctest/store-straight', 'nope', 'nope')) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5443 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5444 answer = DoPost(_REMOTE, '/modalities/orthanctest/store-straight', dicom, 'nope') |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5445 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5446 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5447 answer['SOPClassUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5448 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5449 answer['SOPInstanceUID']) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5450 |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5451 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
281a32ecc5c1
test_store_straight
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
281
diff
changeset
|
5452 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
289
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5453 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5454 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5455 def test_storescu_transcoding(self): # New in Orthanc 1.7.0 |
|
4a70411ac9ad
test_storescu_transcoding
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parents:
285
diff
changeset
|
5456 # Add a RLE-encoded DICOM file |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5457 i = UploadInstance(_REMOTE, 'TransferSyntaxes/1.2.840.10008.1.2.5.dcm')['ID'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5458 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5459 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5460 rleSize = len(DoGet(_REMOTE, '/instances/%s/file' % i)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5461 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5462 # Export the instance, with transcoding: "_REMOTE" is the |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5463 # Orthanc server being tested |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5464 try: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5465 DoDelete(_REMOTE, '/modalities/toto') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5466 except: |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5467 pass |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5468 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5469 params = DoGet(_REMOTE, '/modalities?expand') ['orthanctest'] |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5470 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5471 DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5472 j = DoGet(_LOCAL, '/instances') |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5473 self.assertEqual(1, len(j)) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5474 uncompressedSize = len(DoGet(_LOCAL, '/instances/%s/file' % j[0])) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5475 self.assertTrue(uncompressedSize > rleSize / 2) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5476 |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5477 # Export, with transcoding disabled => this fails |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5478 params['AllowTranscoding'] = False |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5479 DoPut(_REMOTE, '/modalities/toto', params) |
|
4a70411ac9ad
test_storescu_transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
5480 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/modalities/toto/store', str(i), 'text/plain')) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5481 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5482 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5483 def test_bitbucket_issue_169(self): |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5484 with open(GetDatabasePath('Issue169.dcm.bz2'), 'rb') as f: |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5485 dicom = bz2.decompress(f.read()) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5486 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5487 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5488 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5489 self.assertEqual(44350560, len(dicom)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5490 i = DoPost(_REMOTE, '/instances', dicom, 'application/dicom') ['ID'] |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5491 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5492 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5493 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5494 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5495 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5496 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5497 j = DoGet(_LOCAL, '/instances') |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5498 self.assertEqual(1, len(j)) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5499 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5500 # In Orthanc <= 1.6.1, transfer syntax changed from "Explicit |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5501 # VR Little Endian" (1.2.840.10008.1.2.1) to "Implicit VR |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5502 # Little Endian" (1.2.840.10008.1.2) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5503 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5504 DoGet(_LOCAL, '/instances/%s/file' % j[0]))) |
|
290
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5505 |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5506 # In Orthanc <= 1.6.1, the value of the private tags was lost |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5507 # because of this transcoding |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5508 tags = DoGet(_LOCAL, '/instances/%s/tags' % j[0]) |
|
b5333f87065b
test_bitbucket_issue_169
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
289
diff
changeset
|
5509 self.assertEqual('NORMAL', tags['1337,1001']['Value']) |
|
291
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5510 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5511 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5512 def test_modify_transcode(self): |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5513 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5514 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax( |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5515 DoGet(_REMOTE, '/instances/%s/file' % i))) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5516 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5517 for syntax in [ |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5518 '1.2.840.10008.1.2', |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5519 '1.2.840.10008.1.2.1', |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5520 #'1.2.840.10008.1.2.1.99', # Deflated Explicit VR Little Endian |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5521 '1.2.840.10008.1.2.2', |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5522 '1.2.840.10008.1.2.4.50', |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5523 '1.2.840.10008.1.2.4.51', |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5524 '1.2.840.10008.1.2.4.57', |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5525 '1.2.840.10008.1.2.4.70', |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5526 #'1.2.840.10008.1.2.4.80', # This makes DCMTK 3.6.2 crash |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5527 #'1.2.840.10008.1.2.4.81', # This makes DCMTK 3.6.2 crash |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5528 ]: |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5529 transcoded = DoPost(_REMOTE, '/instances/%s/modify' % i, { |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5530 'Transcode' : syntax, |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5531 }) |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5532 |
|
cfa785074c64
test_modify_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
290
diff
changeset
|
5533 self.assertEqual(syntax, GetTransferSyntax(transcoded)) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5534 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5535 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5536 def test_archive_transcode(self): |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5537 info = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm') |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5538 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5539 # GET on "/media" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5540 z = GetArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5541 self.assertEqual(2, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5542 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5543 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5544 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/media?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5545 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5546 z = GetArchive(_REMOTE, '/patients/%s/media?transcode=1.2.840.10008.1.2.4.50' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5547 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5548 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5549 z = GetArchive(_REMOTE, '/studies/%s/media?transcode=1.2.840.10008.1.2.4.51' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5550 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5551 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5552 z = GetArchive(_REMOTE, '/series/%s/media?transcode=1.2.840.10008.1.2.4.57' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5553 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5554 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5555 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5556 # POST on "/media" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5557 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5558 _REMOTE, '/patients/%s/media' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5559 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5560 z = PostArchive(_REMOTE, '/patients/%s/media' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5561 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5562 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5563 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5564 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5565 z = PostArchive(_REMOTE, '/studies/%s/media' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5566 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5567 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5568 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5569 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5570 z = PostArchive(_REMOTE, '/series/%s/media' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5571 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5572 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5573 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5574 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5575 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5576 # GET on "/archive" |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5577 z = GetArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5578 self.assertEqual(1, len(z.namelist())) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5579 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5580 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5581 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients/%s/archive?transcode=nope' % info['ParentPatient'])) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5582 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5583 z = GetArchive(_REMOTE, '/patients/%s/archive?transcode=1.2.840.10008.1.2' % info['ParentPatient']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5584 self.assertEqual('1.2.840.10008.1.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5585 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5586 z = GetArchive(_REMOTE, '/studies/%s/archive?transcode=1.2.840.10008.1.2.2' % info['ParentStudy']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5587 self.assertEqual('1.2.840.10008.1.2.2', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5588 |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5589 z = GetArchive(_REMOTE, '/series/%s/archive?transcode=1.2.840.10008.1.2.4.70' % info['ParentSeries']) |
|
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5590 self.assertEqual('1.2.840.10008.1.2.4.70', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5591 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5592 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5593 # POST on "/archive" |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5594 self.assertRaises(Exception, lambda: PostArchive( |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5595 _REMOTE, '/patients/%s/archive' % info['ParentPatient'], { 'Transcode' : 'nope' })) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5596 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5597 z = PostArchive(_REMOTE, '/patients/%s/archive' % info['ParentPatient'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5598 'Transcode' : '1.2.840.10008.1.2.4.50', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5599 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5600 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5601 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5602 z = PostArchive(_REMOTE, '/studies/%s/archive' % info['ParentStudy'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5603 'Transcode' : '1.2.840.10008.1.2.4.51', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5604 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5605 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5606 |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5607 z = PostArchive(_REMOTE, '/series/%s/archive' % info['ParentSeries'], { |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5608 'Transcode' : '1.2.840.10008.1.2.4.57', |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5609 }) |
|
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5610 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read(z.namelist()[0]))) |
|
292
e1827a4f5d3b
test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
5611 |
|
293
032722c3e919
extended test_archive_transcode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
292
diff
changeset
|
5612 |
|
032722c3e919
extended test_archive_transcode
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5613 # "/tools/create-*" |
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5614 z = PostArchive(_REMOTE, '/tools/create-archive', { |
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5615 'Resources' : [ info['ParentStudy'] ], |
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5616 'Transcode' : '1.2.840.10008.1.2.4.50', |
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5617 }) |
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5618 self.assertEqual(1, len(z.namelist())) |
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5619 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(z.read(z.namelist()[0]))) |
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5620 |
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5621 z = PostArchive(_REMOTE, '/tools/create-media', { |
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5622 'Resources' : [ info['ParentStudy'] ], |
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5623 'Transcode' : '1.2.840.10008.1.2.4.51', |
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5624 }) |
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5625 self.assertEqual(2, len(z.namelist())) |
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5626 self.assertEqual('1.2.840.10008.1.2.4.51', GetTransferSyntax(z.read('IMAGES/IM0'))) |
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5627 |
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5628 z = PostArchive(_REMOTE, '/tools/create-media-extended', { |
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5629 'Resources' : [ info['ParentStudy'] ], |
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parents:
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5630 'Transcode' : '1.2.840.10008.1.2.4.57', |
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5631 }) |
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5632 self.assertEqual(2, len(z.namelist())) |
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5633 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(z.read('IMAGES/IM0'))) |
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5634 |
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5635 |
| 296 | 5636 |
| 295 | 5637 def test_getscu(self): |
| 5638 | |
| 5639 # no transcoding required | |
| 5640 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 5641 | |
| 5642 if os.path.isdir('/tmp/GETSCU'): | |
| 5643 shutil.rmtree('/tmp/GETSCU') | |
| 5644 os.makedirs('/tmp/GETSCU') | |
| 5645 | |
| 5646 subprocess.check_call([ FindExecutable('getscu'), | |
| 5647 _REMOTE['Server'], | |
| 5648 str(_REMOTE['DicomPort']), | |
| 5649 '-aec', 'ORTHANC', | |
| 5650 '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
| 5651 '-k', '0020,000d=1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 5652 '-k', '0008,0052=STUDY', | |
| 5653 '--output-directory', '/tmp/GETSCU/' | |
| 5654 ]) | |
| 5655 | |
| 5656 self.assertTrue(os.path.isfile('/tmp/GETSCU/MR.1.2.840.113619.2.176.2025.1499492.7040.1171286242.109')) | |
| 5657 | |
| 5658 # transcoding required | |
| 5659 # UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') | |
| 5660 | |
| 5661 # subprocess.check_call([ FindExecutable('getscu'), | |
| 5662 # _REMOTE['Server'], | |
| 5663 # str(_REMOTE['DicomPort']), | |
| 5664 # '-aec', 'ORTHANC', | |
| 5665 # '-aet', 'ORTHANCTEST', # pretend to be the other orthanc | |
| 5666 # '-k', '0020,000d=1.2.276.0.7230010.3.1.2.2831176407.19977.1434973482.75580', | |
| 5667 # '-k', '0008,0052=STUDY', | |
| 5668 # '--output-directory', '/tmp/GETSCU/' | |
| 5669 # ]) | |
| 5670 | |
| 5671 # self.assertTrue(os.path.isfile('/tmp/GETSCU/MR.1.2.276.0.7230010.3.1.4.2831176407.19977.1434973482.75579')) | |
| 5672 | |
| 5673 | |
| 5674 |