Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 205:42e4c00fe7c8 Orthanc-1.5.2
fix
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 18 Jan 2019 19:11:20 +0100 |
| parents | f26f9ae9c599 |
| children | a515eec74078 |
| rev | line source |
|---|---|
| 22 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 | |
| 3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
| 3 | 7 # Department, University Hospital of Liege, Belgium |
| 195 | 8 # Copyright (C) 2017-2019 Osimis S.A., Belgium |
| 3 | 9 # |
| 10 # This program is free software: you can redistribute it and/or | |
| 11 # modify it under the terms of the GNU General Public License as | |
| 12 # published by the Free Software Foundation, either version 3 of the | |
| 13 # License, or (at your option) any later version. | |
| 14 # | |
| 15 # This program is distributed in the hope that it will be useful, but | |
| 16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 18 # General Public License for more details. | |
| 19 # | |
| 20 # You should have received a copy of the GNU General Public License | |
| 21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 22 | |
| 23 | |
|
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24 import base64 |
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25 import copy |
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26 import pprint |
| 14 | 27 import tempfile |
| 3 | 28 import unittest |
| 29 | |
| 11 | 30 from PIL import ImageChops |
| 3 | 31 from Toolbox import * |
| 13 | 32 from xml.dom import minidom |
| 3 | 33 |
| 34 _LOCAL = None | |
| 35 _REMOTE = None | |
| 36 | |
| 37 | |
| 38 def SetOrthancParameters(local, remote): | |
| 39 global _LOCAL, _REMOTE | |
| 40 _LOCAL = local | |
| 41 _REMOTE = remote | |
| 42 | |
| 43 | |
| 14 | 44 def ExtractDicomTags(rawDicom, tags): |
| 45 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 46 f.write(rawDicom) | |
| 47 f.flush() | |
| 45 | 48 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 14 | 49 |
| 50 result = [] | |
| 51 for tag in tags: | |
| 52 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
| 53 if match == None: | |
| 54 result.append('') | |
| 55 else: | |
| 56 result.append(match.group(1)) | |
| 57 | |
| 58 return result | |
| 59 | |
| 60 | |
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61 def CompareLists(a, b): |
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62 if len(a) != len(b): |
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63 return False |
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64 |
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65 for i in range(len(a)): |
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66 d = a[i] - b[i] |
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67 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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68 return False |
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69 |
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70 return True |
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71 |
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72 |
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80
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73 def CompareTags(a, b, tagsToIgnore): |
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74 for i in tagsToIgnore: |
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75 if i in a: |
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76 del a[i] |
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77 if i in b: |
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78 del b[i] |
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79 |
| 123 | 80 if a.keys() == b.keys(): |
| 81 return True | |
| 82 else: | |
| 83 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
| 84 return False | |
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85 |
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86 |
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87 def CallFindScu(args): |
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88 p = subprocess.Popen([ FindExecutable('findscu'), |
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89 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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90 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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91 stderr=subprocess.PIPE) |
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92 return p.communicate()[1] |
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93 |
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94 |
| 142 | 95 def GetMoveScuCommand(): |
| 96 return [ | |
| 97 FindExecutable('movescu'), | |
| 98 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) | |
| 99 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
| 100 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
| 101 _REMOTE['Server'], | |
| 102 str(_REMOTE['DicomPort']) | |
| 103 ] | |
| 104 | |
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105 def CallMoveScu(args): |
| 142 | 106 subprocess.check_call(GetMoveScuCommand() + args, |
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107 stderr=subprocess.PIPE) |
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108 |
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109 |
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110 |
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111 def GenerateTestSequence(): |
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112 return [ |
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113 { |
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114 'StudyDescription': 'Hello^', |
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115 'ReferencedStudySequence' : [ |
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116 { |
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117 'StudyDescription': 'Toto', |
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118 }, |
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119 { |
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120 'StudyDescription': 'Tata', |
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121 }, |
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122 ] |
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123 }, |
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124 { |
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125 'StudyDescription': 'Sébastien^', |
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126 'StudyDate' : '19700202', |
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127 } |
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128 ] |
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129 |
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130 |
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131 |
| 15 | 132 |
| 3 | 133 class Orthanc(unittest.TestCase): |
| 134 def setUp(self): | |
| 83 | 135 if (sys.version_info >= (3, 0)): |
| 136 # Remove annoying warnings about unclosed socket in Python 3 | |
| 137 import warnings | |
| 138 warnings.simplefilter("ignore", ResourceWarning) | |
| 139 | |
| 3 | 140 DropOrthanc(_LOCAL) |
| 141 DropOrthanc(_REMOTE) | |
| 174 | 142 UninstallLuaCallbacks(_REMOTE) |
| 45 | 143 #print "In test", self._testMethodName |
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44
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144 |
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145 def AssertSameImages(self, truth, url): |
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146 im = GetImage(_REMOTE, url) |
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147 self.assertTrue(CompareLists(truth, im.getdata())) |
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148 |
| 3 | 149 |
| 150 def test_system(self): | |
| 177 | 151 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) |
| 152 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 153 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 154 | |
| 155 systemInfo = DoGet(_REMOTE, '/system') | |
| 156 if systemInfo["Version"] == "mainline": | |
| 157 print "Skipping version checks since you're currently in mainline" | |
| 158 return | |
| 159 | |
| 173 | 160 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 8, 6)) |
| 161 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 8, 7)) | |
| 162 self.assertTrue(IsOrthancVersionAbove(_LOCAL, 0, 7, 6)) | |
| 163 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 0, 9, 6)) | |
| 164 self.assertFalse(IsOrthancVersionAbove(_LOCAL, 1, 8, 6)) | |
| 3 | 165 |
| 166 def test_upload(self): | |
| 173 | 167 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 168 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 169 | |
| 170 sizeDummyCT = 2472 | |
| 171 sizeOverwrite = 2476 | |
| 172 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
| 173 | |
| 3 | 174 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 183 | 175 self.assertEqual(instance, u['ID']) |
| 3 | 176 self.assertEqual('Success', u['Status']) |
| 173 | 177 |
| 183 | 178 if True: |
| 179 # New test for Orthanc 1.4.3 | |
| 180 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', u['ParentSeries']) | |
| 181 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', u['ParentStudy']) | |
| 182 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', u['ParentPatient']) | |
| 183 | |
| 173 | 184 j = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) |
| 185 s = sizeDummyCT + j | |
| 186 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 187 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 188 | |
| 3 | 189 u = UploadInstance(_REMOTE, 'DummyCT.dcm') |
| 190 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 191 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 192 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 193 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 173 | 194 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) |
| 195 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 196 | |
| 197 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 3 | 198 self.assertEqual('20070101', i['StudyDate']) |
| 173 | 199 self.assertEqual('KNIX', i['PatientName']) |
| 200 | |
| 201 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 202 # Overwriting | |
| 203 self.assertEqual('Success', u['Status']) | |
| 204 else: | |
| 205 self.assertEqual('AlreadyStored', u['Status']) | |
| 206 | |
| 207 u = UploadInstance(_REMOTE, 'DummyCT-overwrite.dcm') | |
| 208 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 209 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 210 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 211 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 212 | |
| 213 if IsOrthancVersionAbove(_REMOTE, 1, 4, 2): | |
| 214 # Overwriting | |
| 215 self.assertEqual('Success', u['Status']) | |
| 216 j2 = int(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % instance)) | |
| 217 s2 = sizeOverwrite + j2 | |
| 218 self.assertNotEqual(s, s2) | |
| 219 self.assertNotEqual(j, j2) | |
| 220 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 221 self.assertEqual('%d' % s2, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 222 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % instance) | |
| 223 self.assertEqual('ANOTHER', i['PatientName']) | |
| 224 else: | |
| 225 self.assertEqual('AlreadyStored', u['Status']) | |
| 226 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 227 self.assertEqual('%d' % s, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 3 | 228 |
| 5 | 229 def test_upload_2(self): |
| 3 | 230 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
| 231 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
| 232 self.assertEqual(i, instance['ID']) | |
| 233 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
| 234 instance['MainDicomTags']['SOPInstanceUID']) | |
| 235 | |
| 236 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
| 237 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 238 series['MainDicomTags']['SeriesInstanceUID']) | |
| 239 | |
| 240 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
| 241 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 242 study['MainDicomTags']['StudyInstanceUID']) | |
| 243 | |
| 244 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
| 245 self.assertEqual('ozp00SjY2xG', | |
| 246 patient['MainDicomTags']['PatientID']) | |
| 247 | |
| 248 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
| 249 self.assertEqual(2472, len(dicom)) | |
| 250 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
| 251 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 252 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
| 253 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
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254 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['StationName']) |
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255 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags?short' % i)['0008,1010']) |
| 3 | 256 |
| 257 | |
| 5 | 258 def test_images(self): |
| 259 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
| 260 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 3 | 261 |
| 5 | 262 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
| 263 self.assertEqual("L", im.mode) | |
| 264 self.assertEqual(512, im.size[0]) | |
| 265 self.assertEqual(358, im.size[1]) | |
| 266 | |
| 267 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
| 268 self.assertEqual("L", im.mode) | |
| 269 self.assertEqual(512, im.size[0]) | |
| 270 self.assertEqual(358, im.size[1]) | |
| 271 | |
| 272 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
| 273 self.assertEqual(512, im.size[0]) | |
| 274 self.assertEqual(358, im.size[1]) | |
| 275 | |
| 276 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 277 self.assertEqual("L", im.mode) | |
| 278 self.assertEqual(512, im.size[0]) | |
| 279 self.assertEqual(358, im.size[1]) | |
| 280 | |
| 281 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 282 self.assertEqual("L", im.mode) | |
| 283 self.assertEqual(512, im.size[0]) | |
| 284 self.assertEqual(358, im.size[1]) | |
| 285 | |
| 286 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 287 self.assertEqual(512, im.size[0]) | |
| 288 self.assertEqual(358, im.size[1]) | |
| 64 | 289 |
| 290 # This is Little Endian Explicit | |
| 291 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
| 292 | |
| 6 | 293 |
| 294 def test_hierarchy(self): | |
| 295 UploadFolder(_REMOTE, 'Brainix/Epi') | |
| 296 UploadFolder(_REMOTE, 'Brainix/Flair') | |
| 297 UploadFolder(_REMOTE, 'Knee/T1') | |
| 298 UploadFolder(_REMOTE, 'Knee/T2') | |
| 299 | |
| 300 p = DoGet(_REMOTE, '/patients') | |
| 301 s = DoGet(_REMOTE, '/studies') | |
| 302 t = DoGet(_REMOTE, '/series') | |
| 303 self.assertEqual(2, len(p)) | |
| 304 self.assertEqual(2, len(s)) | |
| 305 self.assertEqual(4, len(t)) | |
| 306 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
| 307 | |
| 308 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 309 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 310 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 311 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 312 | |
| 313 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
| 314 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
| 315 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 316 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 317 | |
| 318 self.assertTrue(brainixPatient in p) | |
| 319 self.assertTrue(kneePatient in p) | |
| 320 self.assertTrue(brainixStudy in s) | |
| 321 self.assertTrue(kneeStudy in s) | |
| 322 self.assertTrue(brainixEpi in t) | |
| 323 self.assertTrue(brainixFlair in t) | |
| 324 self.assertTrue(kneeT1 in t) | |
| 325 self.assertTrue(kneeT2 in t) | |
| 326 | |
| 327 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
| 328 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
| 329 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
| 330 | |
| 331 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
| 332 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
| 333 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
| 334 | |
| 335 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
| 336 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
| 337 | |
| 338 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
| 339 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
| 340 | |
| 341 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
| 342 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
| 343 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
| 344 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
| 345 | |
| 346 for patient in p: | |
| 347 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
| 348 self.assertEqual(patient, study['ParentPatient']) | |
| 349 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
| 350 self.assertEqual(study['ID'], series['ParentStudy']) | |
| 351 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
| 352 self.assertEqual(series['ID'], instance['ParentSeries']) | |
| 353 | |
| 354 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
| 355 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
| 356 | |
| 357 | |
| 358 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
| 359 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 360 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 361 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 362 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
| 363 self.assertEqual(None, r) | |
| 364 | |
| 365 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
| 366 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 367 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 368 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 369 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
| 370 self.assertEqual('Study', r['Type']) | |
| 371 self.assertEqual(kneeStudy, r['ID']) | |
| 372 | |
| 373 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
| 374 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 375 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 376 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 377 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
| 378 self.assertEqual('Series', r['Type']) | |
| 379 self.assertEqual(kneeT1, r['ID']) | |
| 380 | |
| 381 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
| 382 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 383 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
| 384 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
| 385 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 386 self.assertEqual(None, r) | |
| 387 | |
| 388 DropOrthanc(_REMOTE) | |
| 389 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 390 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 7 | 391 |
| 392 | |
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393 def test_multiframe(self): |
| 7 | 394 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
| 395 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
| 396 | |
| 397 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
| 398 self.assertEqual("L", im.mode) | |
| 399 self.assertEqual(512, im.size[0]) | |
| 400 self.assertEqual(512, im.size[1]) | |
| 401 | |
| 402 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
| 403 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
| 404 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
| 405 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
| 406 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
| 407 | |
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408 |
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409 def test_changes(self): |
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410 # Check emptiness |
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411 c = DoGet(_REMOTE, '/changes') |
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412 self.assertEqual(0, len(c['Changes'])) |
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413 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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414 self.assertTrue(c['Done']) |
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415 c = DoGet(_REMOTE, '/changes?last') |
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416 self.assertEqual(0, len(c['Changes'])) |
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417 #self.assertEqual(0, c['Last']) # Not true anymore for Orthanc >= 1.5.2 |
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418 self.assertTrue(c['Done']) |
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419 |
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420 # Add 1 instance |
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421 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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422 c = DoGet(_REMOTE, '/changes') |
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423 begin = c['Last'] |
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424 self.assertEqual(4, len(c['Changes'])) |
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425 self.assertTrue(c['Done']) |
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426 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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427 |
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428 c = DoGet(_REMOTE, '/changes?last') |
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429 self.assertEqual(1, len(c['Changes'])) |
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430 self.assertEqual(begin, c['Last']) |
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431 self.assertTrue(c['Done']) |
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432 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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433 self.assertEqual(1, len(c['Changes'])) |
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434 self.assertEqual(begin, c['Last']) |
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435 self.assertTrue(c['Done']) |
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436 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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437 self.assertEqual(1, len(c['Changes'])) |
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438 self.assertEqual(begin - 1, c['Last']) |
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439 self.assertFalse(c['Done']) |
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440 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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441 self.assertEqual(1, len(c['Changes'])) |
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442 self.assertEqual(begin - 2, c['Last']) |
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443 self.assertFalse(c['Done']) |
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444 |
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445 UploadFolder(_REMOTE, 'Knee/T1') |
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446 UploadFolder(_REMOTE, 'Knee/T2') |
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447 since = begin |
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448 countPatients = 0 |
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449 countStudies = 0 |
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450 countSeries = 0 |
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451 countInstances = 0 |
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452 completed = 0 |
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453 while True: |
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454 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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455 since = c['Last'] |
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456 for i in c['Changes']: |
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457 if i['ResourceType'] == 'Instance': |
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458 countInstances += 1 |
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459 if i['ResourceType'] == 'Patient': |
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460 countPatients += 1 |
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461 if i['ResourceType'] == 'Study': |
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462 countStudies += 1 |
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463 if i['ResourceType'] == 'Series': |
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464 countSeries += 1 |
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465 if i['ChangeType'] == 'NewInstance': |
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466 countInstances += 1 |
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467 if i['ChangeType'] == 'NewPatient': |
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468 countPatients += 1 |
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469 if i['ChangeType'] == 'NewStudy': |
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470 countStudies += 1 |
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471 if i['ChangeType'] == 'NewSeries': |
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472 countSeries += 1 |
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473 if i['ChangeType'] == 'CompletedSeries': |
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474 completed += 1 |
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475 self.assertTrue('ID' in i) |
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476 self.assertTrue('Path' in i) |
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477 self.assertTrue('Seq' in i) |
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478 if c['Done']: |
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479 break |
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480 |
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481 self.assertEqual(2 * 50, countInstances) |
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482 self.assertEqual(2 * 1, countPatients) |
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483 self.assertEqual(2 * 1, countStudies) |
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484 self.assertEqual(2 * 2, countSeries) |
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485 self.assertEqual(0, completed) |
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486 |
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487 |
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488 def test_archive(self): |
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489 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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490 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
| 192 | 491 knee = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' |
| 492 | |
| 493 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
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494 self.assertEqual(2, len(z.namelist())) |
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495 |
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496 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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497 self.assertEqual(2, len(z.namelist())) |
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498 |
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499 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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500 self.assertEqual(1, len(z.namelist())) |
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501 |
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502 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
| 192 | 503 brainix = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' |
| 504 | |
| 505 z = GetArchive(_REMOTE, '/patients/%s/archive' % knee) | |
|
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506 self.assertEqual(2, len(z.namelist())) |
| 192 | 507 |
| 508 z = PostArchive(_REMOTE, '/tools/create-archive', { | |
| 509 'Resources' : [ brainix, knee ] | |
| 510 }) | |
| 511 self.assertEqual(3, len(z.namelist())) | |
| 512 | |
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513 |
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514 def test_media_archive(self): |
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515 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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516 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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517 |
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518 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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519 self.assertEqual(3, len(z.namelist())) |
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520 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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521 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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522 self.assertTrue('DICOMDIR' in z.namelist()) |
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523 |
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524 try: |
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525 os.remove('/tmp/DICOMDIR') |
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526 except: |
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527 # The file does not exist |
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528 pass |
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529 |
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530 z.extract('DICOMDIR', '/tmp') |
| 45 | 531 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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532 stderr = subprocess.STDOUT).split('\n') |
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533 self.assertEqual(3, len(a)) |
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534 self.assertTrue(a[0].startswith('Warning')) |
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535 self.assertEqual('BasicDirectory', a[1]) |
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536 self.assertEqual('', a[2]) |
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537 |
| 45 | 538 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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539 stderr = subprocess.STDOUT).split('\n') |
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540 self.assertEqual(1, len(a)) |
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541 self.assertEqual('', a[0]) |
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542 |
| 45 | 543 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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544 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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545 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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546 |
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547 os.remove('/tmp/DICOMDIR') |
| 10 | 548 |
| 549 | |
| 550 def test_protection(self): | |
| 551 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 552 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 553 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 554 a = DoGet(_REMOTE, '/patients')[0] | |
| 555 b = DoGet(_REMOTE, '/patients')[1] | |
| 556 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 557 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 558 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 559 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
| 560 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 561 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
| 562 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 563 | |
| 564 | |
| 12 | 565 def test_raw_tags(self): |
| 10 | 566 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
| 567 | |
| 568 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
| 569 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
| 570 | |
| 571 s = '/instances/%s/content/' % i | |
| 572 | |
| 573 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
| 574 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
| 575 | |
| 576 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
| 577 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
| 578 | |
| 579 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 580 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 582 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 583 | |
| 584 for i in DoGet(_REMOTE, '/instances'): | |
| 585 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
| 586 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
| 587 | |
| 588 | |
| 589 def test_raw_tags_mdn(self): | |
| 590 # Bug reported by Cyril Paulus | |
| 591 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 592 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
| 593 | |
| 594 | |
| 595 def test_modify_instance(self): | |
| 596 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
| 597 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
| 598 json.dumps({ | |
| 599 "Replace" : { | |
| 600 "PatientName" : "hello", | |
| 601 #"PatientID" : "world" | |
| 602 }, | |
| 603 "Remove" : [ "StationName" ], | |
|
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604 "RemovePrivateTags" : True |
| 10 | 605 }), |
| 606 'application/json') | |
| 607 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
| 608 | |
| 609 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 610 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
| 83 | 611 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
| 10 | 612 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
| 613 | |
| 614 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 615 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
| 616 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
| 617 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
| 618 | |
| 619 | |
| 620 def test_modify_series(self): | |
| 621 # Upload 4 images from the same series | |
| 622 for i in range(4): | |
| 623 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 624 | |
| 625 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 626 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
| 627 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 628 'application/json')['ID'] | |
| 629 | |
| 630 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
| 631 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 632 self.assertEqual(4, len(instances)) | |
| 633 for i in instances: | |
| 634 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 635 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 636 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 637 | |
| 638 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 639 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 640 | |
| 641 | |
| 642 def test_modify_study(self): | |
| 643 # Upload 4 images from the 2 series of the same study | |
| 644 for i in range(4): | |
| 645 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 646 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 647 | |
| 648 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 649 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
| 650 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 651 'application/json')['ID'] | |
| 652 | |
| 653 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
| 654 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 655 self.assertEqual(2, len(series)) | |
| 656 for s in series: | |
| 657 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
| 658 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 659 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 660 | |
| 661 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 662 for i in instances: | |
| 663 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
| 664 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 665 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 666 | |
| 667 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 668 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 669 | |
| 670 | |
| 671 def test_anonymize_series(self): | |
| 672 # Upload 4 images from the same series | |
| 673 for i in range(4): | |
| 674 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 675 | |
| 676 origSeries = DoGet(_REMOTE, '/series')[0] | |
| 677 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
| 678 '{}', | |
| 679 'application/json')['ID'] | |
| 680 | |
| 681 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
| 682 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
| 683 self.assertEqual(4, len(instances)) | |
| 684 for i in instances: | |
| 685 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 686 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 687 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 688 | |
| 689 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
| 690 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
| 691 | |
| 692 | |
| 693 def test_anonymize_study(self): | |
| 694 # Upload 4 images from the 2 series of the same study | |
| 695 for i in range(4): | |
| 696 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 697 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 698 | |
| 699 origStudy = DoGet(_REMOTE, '/studies')[0] | |
| 700 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
| 701 '{"Replace":{"PatientName":"Jodogne"}}', | |
| 702 'application/json')['ID'] | |
| 703 | |
| 704 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
| 705 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
| 706 self.assertEqual(2, len(series)) | |
| 707 for s in series: | |
| 708 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
| 709 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
| 710 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
| 711 | |
| 712 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
| 713 for i in instances: | |
| 714 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
| 715 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
| 716 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
| 717 | |
| 718 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
| 719 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
| 11 | 720 |
| 721 | |
| 722 | |
| 723 def test_storescu(self): | |
| 724 # Check emptiness | |
| 725 e = DoGet(_REMOTE, '/exports') | |
| 726 self.assertEqual(0, len(e['Exports'])) | |
| 727 self.assertEqual(0, e['Last']) | |
| 728 self.assertTrue(e['Done']) | |
| 729 e = DoGet(_REMOTE, '/exports?last') | |
| 730 self.assertEqual(0, len(e['Exports'])) | |
| 731 self.assertEqual(0, e['Last']) | |
| 732 self.assertTrue(e['Done']) | |
| 733 | |
| 734 # Add 1 instance | |
| 735 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 736 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 737 | |
| 738 # Export the instance | |
| 739 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
| 740 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 741 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 742 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 743 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 744 | |
| 745 e = DoGet(_REMOTE, '/exports') | |
| 746 self.assertEqual(1, len(e['Exports'])) | |
| 747 self.assertTrue(e['Done']) | |
| 748 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 749 e = DoGet(_REMOTE, '/exports?limit=1') | |
| 750 self.assertEqual(1, len(e['Exports'])) | |
| 751 self.assertTrue(e['Done']) | |
| 752 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 753 e = DoGet(_REMOTE, '/exports?last') | |
| 754 self.assertEqual(1, len(e['Exports'])) | |
| 755 self.assertTrue(e['Done']) | |
| 756 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 757 seqInstance = e['Last'] | |
| 758 | |
| 759 # Export the series | |
| 760 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
| 761 | |
| 762 e = DoGet(_REMOTE, '/exports') | |
| 763 self.assertEqual(2, len(e['Exports'])) | |
| 764 self.assertTrue(e['Done']) | |
| 765 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 766 seqSeries = e['Last'] | |
| 767 self.assertNotEqual(seqInstance, seqSeries) | |
| 768 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 769 self.assertEqual(1, len(e['Exports'])) | |
| 770 self.assertFalse(e['Done']) | |
| 771 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 772 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 773 self.assertEqual(1, len(e['Exports'])) | |
| 774 self.assertTrue(e['Done']) | |
| 775 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 776 e = DoGet(_REMOTE, '/exports?last') | |
| 777 self.assertEqual(1, len(e['Exports'])) | |
| 778 self.assertTrue(e['Done']) | |
| 779 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 780 | |
| 781 # Export the study | |
| 782 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
| 783 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
| 784 | |
| 785 # Export the patient | |
| 786 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
| 787 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 788 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
| 789 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
| 790 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 791 | |
| 792 e = DoGet(_REMOTE, '/exports') | |
| 793 self.assertEqual(4, len(e['Exports'])) | |
| 794 self.assertTrue(e['Done']) | |
| 795 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
| 796 seqPatient = e['Last'] | |
| 797 self.assertNotEqual(seqInstance, seqSeries) | |
| 798 self.assertNotEqual(seqSeries, seqStudy) | |
| 799 self.assertNotEqual(seqStudy, seqPatient) | |
| 800 self.assertTrue(seqInstance < seqSeries) | |
| 801 self.assertTrue(seqSeries < seqStudy) | |
| 802 self.assertTrue(seqStudy < seqPatient) | |
| 803 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
| 804 self.assertEqual(1, len(e['Exports'])) | |
| 805 self.assertFalse(e['Done']) | |
| 806 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
| 807 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
| 808 self.assertEqual(1, len(e['Exports'])) | |
| 809 self.assertFalse(e['Done']) | |
| 810 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
| 811 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
| 812 self.assertEqual(1, len(e['Exports'])) | |
| 813 self.assertFalse(e['Done']) | |
| 814 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
| 815 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
| 816 self.assertEqual(1, len(e['Exports'])) | |
| 817 self.assertTrue(e['Done']) | |
| 818 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 819 e = DoGet(_REMOTE, '/exports?last') | |
| 820 self.assertEqual(1, len(e['Exports'])) | |
| 821 self.assertTrue(e['Done']) | |
| 822 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
| 823 | |
| 824 | |
| 825 # Check the content of the logged information | |
| 826 e = DoGet(_REMOTE, '/exports')['Exports'] | |
| 827 | |
| 828 if 'PatientID' in e[0]: | |
| 829 # Since Orthanc 0.8.6 | |
| 830 patient = 'PatientID' | |
| 831 study = 'StudyInstanceUID' | |
| 832 series = 'SeriesInstanceUID' | |
| 833 instance = 'SOPInstanceUID' | |
| 834 else: | |
| 835 # Up to Orthanc 0.8.5 | |
| 836 patient = 'PatientId' | |
| 837 study = 'StudyInstanceUid' | |
| 838 series = 'SeriesInstanceUid' | |
| 839 instance = 'SopInstanceUid' | |
| 840 | |
| 841 for k in range(4): | |
| 842 self.assertTrue('Date' in e[k]) | |
| 843 self.assertTrue('Seq' in e[k]) | |
| 844 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
| 845 | |
| 846 self.assertEqual(10, len(e[0])) | |
| 847 self.assertEqual('Instance', e[0]['ResourceType']) | |
| 848 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
| 849 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
| 850 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
| 851 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
| 852 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
| 853 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
| 854 | |
| 855 self.assertEqual(9, len(e[1])) | |
| 856 self.assertEqual('Series', e[1]['ResourceType']) | |
| 857 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
| 858 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
| 859 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
| 860 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
| 861 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
| 862 | |
| 863 self.assertEqual(8, len(e[2])) | |
| 864 self.assertEqual('Study', e[2]['ResourceType']) | |
| 865 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
| 866 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
| 867 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
| 868 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
| 869 | |
| 870 self.assertEqual(7, len(e[3])) | |
| 871 self.assertEqual('Patient', e[3]['ResourceType']) | |
| 872 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
| 873 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
| 874 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
| 875 | |
| 876 DropOrthanc(_REMOTE) | |
| 877 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 878 | |
| 879 | |
| 880 def test_store_peer(self): | |
| 881 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
| 882 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 883 | |
| 884 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 885 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 886 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 887 | |
| 888 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
| 889 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 890 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 891 | |
| 892 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 893 | |
| 894 DropOrthanc(_REMOTE) | |
| 895 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
| 896 | |
| 897 | |
| 898 def test_bulk_storescu(self): | |
| 899 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 900 | |
| 901 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 902 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 903 | |
| 904 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
| 905 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 906 | |
| 907 DropOrthanc(_LOCAL) | |
| 908 | |
| 909 # Send using patient's UUID | |
| 910 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 911 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
| 912 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
| 913 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
| 914 | |
| 915 | |
| 916 def test_color(self): | |
| 917 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
| 918 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
| 919 self.assertEqual("RGB", im.mode) | |
| 920 self.assertEqual(41, im.size[0]) | |
| 921 self.assertEqual(41, im.size[1]) | |
| 922 | |
| 923 # http://effbot.org/zone/pil-comparing-images.htm | |
| 13 | 924 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
| 11 | 925 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
| 926 | |
| 927 | |
| 12 | 928 def test_faking_ruby_put(self): |
| 929 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 930 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 931 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 932 a = DoGet(_REMOTE, '/patients')[0] | |
| 933 b = DoGet(_REMOTE, '/patients')[1] | |
| 934 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 935 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 936 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 937 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
| 938 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 939 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
| 940 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 941 | |
| 942 | |
| 943 def test_faking_ruby_delete(self): | |
| 944 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 945 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 946 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 947 a = DoGet(_REMOTE, '/patients')[0] | |
| 948 b = DoGet(_REMOTE, '/patients')[1] | |
| 949 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
| 950 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 951 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
| 952 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 953 | |
| 954 | |
| 955 def test_faking_google_put(self): | |
| 956 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 957 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 958 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 959 a = DoGet(_REMOTE, '/patients')[0] | |
| 960 b = DoGet(_REMOTE, '/patients')[1] | |
| 961 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 962 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 963 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 964 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
| 965 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 966 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
| 967 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
| 968 | |
| 969 | |
| 970 def test_faking_google_delete(self): | |
| 971 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 972 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 973 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 974 a = DoGet(_REMOTE, '/patients')[0] | |
| 975 b = DoGet(_REMOTE, '/patients')[1] | |
| 976 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 977 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 978 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
| 979 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 980 | |
| 981 | |
| 982 def test_lua(self): | |
| 983 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
| 984 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
| 985 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
| 986 | |
| 987 | |
| 988 def test_metadata(self): | |
| 989 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 990 p = DoGet(_REMOTE, '/patients')[0] | |
| 991 i = DoGet(_REMOTE, '/instances')[0] | |
| 992 | |
| 993 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 994 self.assertEqual(1, len(m)) | |
| 995 self.assertEqual('LastUpdate', m[0]) | |
| 996 | |
| 997 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
| 145 | 998 self.assertEqual(8, len(m)) |
| 12 | 999 self.assertTrue('IndexInSeries' in m) |
| 1000 self.assertTrue('ReceptionDate' in m) | |
| 1001 self.assertTrue('RemoteAET' in m) | |
|
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1002 self.assertTrue('Origin' in m) |
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test TransferSyntax metadata
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1003 self.assertTrue('TransferSyntax' in m) |
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testing of metadata SopClassUid
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1004 self.assertTrue('SopClassUid' in m) |
| 145 | 1005 self.assertTrue('RemoteIP' in m) |
| 1006 self.assertTrue('HttpUsername' in m) | |
|
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parents:
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1007 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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test Origin metadata of instances
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1008 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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test Origin metadata of instances
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parents:
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1009 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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1010 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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1011 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
| 12 | 1012 |
| 1013 # Play with custom metadata | |
| 1014 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
| 1015 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1016 self.assertEqual(2, len(m)) | |
| 1017 self.assertTrue('LastUpdate' in m) | |
| 1018 self.assertTrue('5555' in m) | |
| 1019 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1020 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
| 1021 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
| 1022 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
| 1023 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
| 1024 self.assertEqual(1, len(m)) | |
| 1025 self.assertTrue('LastUpdate' in m) | |
| 13 | 1026 |
| 1027 | |
| 1028 def test_statistics(self): | |
| 1029 # Upload 16 instances | |
| 1030 for i in range(4): | |
| 1031 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1032 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1033 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1034 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1035 | |
| 1036 s = DoGet(_REMOTE, '/statistics') | |
| 1037 self.assertEqual(16, s['CountInstances']) | |
| 1038 self.assertEqual(2, s['CountPatients']) | |
| 1039 self.assertEqual(2, s['CountStudies']) | |
| 1040 self.assertEqual(4, s['CountSeries']) | |
| 1041 d = int(s['TotalUncompressedSize']) | |
| 1042 | |
| 1043 e = 0 | |
| 1044 for patient in DoGet(_REMOTE, '/patients'): | |
| 1045 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
| 1046 self.assertEqual(8, s['CountInstances']) | |
| 1047 self.assertEqual(1, s['CountStudies']) | |
| 1048 self.assertEqual(2, s['CountSeries']) | |
| 1049 e += int(s['UncompressedSize']) | |
| 1050 | |
| 1051 for study in DoGet(_REMOTE, '/studies'): | |
| 1052 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
| 1053 self.assertEqual(8, s['CountInstances']) | |
| 1054 self.assertEqual(2, s['CountSeries']) | |
| 1055 e += int(s['UncompressedSize']) | |
| 1056 | |
| 1057 for series in DoGet(_REMOTE, '/series'): | |
| 1058 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
| 1059 self.assertEqual(4, s['CountInstances']) | |
| 1060 e += int(s['UncompressedSize']) | |
| 1061 | |
| 1062 self.assertEqual(3 * d, e) | |
| 1063 | |
| 1064 | |
| 1065 def test_custom_attachment(self): | |
| 1066 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 1067 patient = DoGet(_REMOTE, '/patients')[0] | |
| 1068 instance = DoGet(_REMOTE, '/instances')[0] | |
| 1069 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
| 1070 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1071 | |
| 1072 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1073 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
| 1074 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1075 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
| 1076 | |
| 1077 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
| 1078 hello = 'hellohellohellohellohellohellohellohellohello' | |
| 1079 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
| 1080 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1081 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1082 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1083 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
| 1084 | |
| 1085 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
| 1086 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1087 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1088 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1089 size + | |
| 1090 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
| 1091 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1092 | |
| 1093 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1094 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
| 1095 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1096 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
| 1097 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
| 1098 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
| 1099 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
| 1100 | |
| 1101 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
| 1102 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
| 1103 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1104 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1105 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
| 1106 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
| 1107 | |
| 1108 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1109 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
| 1110 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
| 1111 | |
| 1112 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
| 1113 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
| 1114 | |
| 1115 | |
| 1116 def test_incoming_storescu(self): | |
| 1117 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 45 | 1118 subprocess.check_call([ FindExecutable('storescu'), |
|
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1119 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
| 13 | 1120 GetDatabasePath('ColorTestImageJ.dcm') ]) |
| 1121 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1122 | |
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1123 i = DoGet(_REMOTE, '/instances') |
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1124 self.assertEqual(1, len(i)) |
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1125 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
| 145 | 1126 self.assertEqual(8, len(m)) |
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1127 self.assertTrue('IndexInSeries' in m) |
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1128 self.assertTrue('ReceptionDate' in m) |
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1129 self.assertTrue('RemoteAET' in m) |
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1130 self.assertTrue('Origin' in m) |
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1131 self.assertTrue('TransferSyntax' in m) |
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1132 self.assertTrue('SopClassUid' in m) |
| 145 | 1133 self.assertTrue('RemoteIP' in m) |
| 1134 self.assertTrue('CalledAET' in m) | |
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1135 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1136 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1137 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1138 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1139 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1140 |
| 13 | 1141 |
| 1142 def test_incoming_findscu(self): | |
| 1143 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
| 1144 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
| 1145 | |
| 1146 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
| 1147 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
| 1148 self.assertEqual(2, len(patientNames)) | |
| 1149 self.assertTrue('Test Patient BG ' in patientNames) | |
| 1150 self.assertTrue('Anonymized' in patientNames) | |
| 1151 | |
| 1152 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
| 1153 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
| 1154 self.assertEqual(2, len(series)) | |
| 1155 self.assertTrue('20070208' in series) | |
| 1156 self.assertTrue('19980312' in series) | |
| 1157 | |
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1158 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1159 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1160 self.assertEqual(1, len(series)) |
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1161 self.assertTrue('19980312' in series) |
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1162 |
| 13 | 1163 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
| 1164 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1165 self.assertEqual(1, len(series)) | |
| 1166 | |
| 1167 # Test the "CaseSentitivePN" flag (false by default) | |
| 1168 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
| 1169 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
| 1170 self.assertEqual(1, len(series)) | |
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1171 |
| 70 | 1172 # Test range search (buggy if Orthanc <= 0.9.6) |
| 1173 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
| 1174 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1175 self.assertEqual(2, len(studies)) | |
| 1176 self.assertTrue('20070208' in studies) | |
| 1177 self.assertTrue('19980312' in studies) | |
| 1178 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
| 1179 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1180 self.assertEqual(1, len(studies)) | |
| 1181 self.assertTrue('19980312' in studies) | |
| 1182 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
| 1183 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
| 1184 self.assertEqual(1, len(studies)) | |
| 1185 self.assertTrue('19980312' in studies) | |
| 13 | 1186 |
| 1187 | |
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1188 def test_incoming_findscu_2(self): |
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1189 # This test fails if "LookupMode_DatabaseOnly" is used |
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1190 # (sequences are not available in this mode, and only main |
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1191 # DICOM tags are returned) |
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1192 UploadInstance(_REMOTE, 'Multiframe.dcm') |
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1193 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1194 |
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1195 # Test returning sequence values (only since Orthanc 0.9.5) |
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1196 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1197 sequences = re.findall('\(0008,2112\)', i) |
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1198 self.assertEqual(1, len(sequences)) |
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1199 |
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1200 # Test returning a non-main DICOM tag, |
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1201 # "SecondaryCaptureDeviceID" (0018,1010), whose value is |
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1202 # "MEDPC" in "ColorTestImageJ.dcm" |
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1203 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010' ]) |
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1204 tags = re.findall('\(0018,1010\).*MEDPC', i) |
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1205 self.assertEqual(1, len(tags)) |
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1206 |
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1207 |
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1208 def test_incoming_findscu_3(self): |
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1209 # This test fails if "LookupMode_DatabaseOnly" or |
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1210 # "LookupMode_DiskOnAnswer" is used, as |
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1211 # "SecondaryCaptureDeviceID" (0018,1010) is not a main DICOM |
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1212 # tag, as thus a constraint cannot be applied to it |
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1213 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') |
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1214 |
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1215 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0018,1010=MEDPC' ]) |
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1216 sequences = re.findall('\(0018,1010\)', i) |
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1217 self.assertEqual(1, len(sequences)) |
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1218 |
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1219 |
| 13 | 1220 def test_incoming_movescu(self): |
| 1221 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
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1222 |
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1223 # No matching patient, so no job is created |
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1224 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1225 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
| 13 | 1226 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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1228 # 1 Matching patient, track the job |
| 138 | 1229 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 1230 '--patient', | |
| 1231 '-k', '0008,0052=PATIENT', | |
| 1232 '-k', 'PatientID=12345678' | |
| 1233 ]))) | |
| 13 | 1234 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
| 1235 | |
| 1236 | |
| 1237 def test_findscu(self): | |
| 1238 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1239 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 1240 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
| 1241 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1242 | |
| 1243 # Test the "find-patient" level | |
| 1244 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1245 self.assertEqual(1, len(p)) | |
| 1246 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
| 1247 | |
| 1248 # Test wildcards constraints. The "LO" value representation | |
| 1249 # for PatientID is always case-sensitive, but the "PN" for | |
| 1250 # PatientName might depend on the implementation: | |
| 1251 # "GenerateConfigurationForTests.py" will force it to be case | |
| 1252 # insensitive (which was the default until Orthanc 0.8.6). | |
| 1253 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
| 1254 self.assertEqual(1, len(p)) | |
| 1255 | |
| 1256 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
| 1257 self.assertEqual(1, len(p)) | |
| 1258 | |
| 1259 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
| 1260 self.assertEqual(1, len(p)) | |
| 1261 | |
| 1262 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
| 1263 self.assertEqual(1, len(p)) | |
| 1264 | |
| 1265 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
| 1266 self.assertEqual(0, len(p)) | |
| 1267 | |
| 1268 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
| 1269 self.assertEqual(0, len(p)) | |
| 1270 | |
| 1271 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
| 1272 self.assertEqual(0, len(p)) | |
| 1273 | |
| 1274 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
| 1275 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
| 1276 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
| 1277 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
| 1278 | |
| 1279 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
| 1280 self.assertEqual(2, len(p)) | |
| 1281 | |
| 1282 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
| 1283 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
| 1284 self.assertEqual(1, len(s)) | |
| 1285 self.assertEqual('20070208', s[0]['StudyDate']) | |
| 1286 | |
| 1287 # Test range searches | |
| 1288 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1289 'StudyDate' : '-20070101' }) | |
| 1290 self.assertEqual(0, len(t)) | |
| 1291 | |
| 1292 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1293 'StudyDate' : '20090101-' }) | |
| 1294 self.assertEqual(0, len(t)) | |
| 1295 | |
| 1296 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1297 'StudyDate' : '20070101-' }) | |
| 1298 self.assertEqual(1, len(t)) | |
| 1299 | |
| 1300 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1301 'StudyDate' : '-20090101' }) | |
| 1302 self.assertEqual(1, len(t)) | |
| 1303 | |
| 1304 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1305 'StudyDate' : '20070207-20070207' }) | |
| 1306 self.assertEqual(0, len(t)) | |
| 1307 | |
| 1308 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1309 'StudyDate' : '20070208-20070208' }) | |
| 1310 self.assertEqual(1, len(t)) | |
| 1311 | |
| 1312 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
| 1313 'StudyDate' : '20070209-20070209' }) | |
| 1314 self.assertEqual(0, len(t)) | |
| 1315 | |
| 1316 # Test the ModalitiesInStudy tag | |
| 1317 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1318 'PatientID' : 'B9uTHKOZ', | |
| 1319 'ModalitiesInStudy' : 'US' }) | |
| 1320 self.assertEqual(0, len(t)) | |
| 1321 | |
| 1322 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1323 'PatientID' : 'B9uTHKOZ', | |
| 1324 'ModalitiesInStudy' : 'CT' }) | |
| 1325 self.assertEqual(1, len(t)) | |
| 1326 | |
| 1327 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
| 1328 'PatientID' : 'B9uTHKOZ', | |
| 1329 'ModalitiesInStudy' : 'US\\CT' }) | |
| 1330 self.assertEqual(1, len(t)) | |
| 1331 | |
| 1332 # Test the "find-series" level | |
| 1333 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1334 'PatientID' : 'B9uTHKOZ', | |
| 1335 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
| 1336 self.assertEqual(1, len(t)) | |
| 1337 | |
| 1338 # Test "\" separator | |
| 1339 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1340 'PatientID' : 'B9uTHKOZ', | |
| 1341 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1342 'Modality' : 'MR\\CT\\US' }) | |
| 1343 self.assertEqual(1, len(t)) | |
| 1344 | |
| 1345 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
| 1346 'PatientID' : 'B9uTHKOZ', | |
| 1347 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
| 1348 'Modality' : 'MR\\US' }) | |
| 1349 self.assertEqual(0, len(t)) | |
| 1350 | |
| 1351 | |
| 1352 def test_update_modalities(self): | |
| 1353 try: | |
| 1354 DoDelete(_REMOTE, '/modalities/toto') | |
| 1355 except: | |
| 1356 pass | |
| 1357 try: | |
| 1358 DoDelete(_REMOTE, '/modalities/tata') | |
| 1359 except: | |
| 1360 pass | |
| 1361 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1362 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
| 116 | 1363 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
| 1364 DoDelete(_REMOTE, '/modalities/tata') | |
| 124 | 1365 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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1366 DoDelete(_REMOTE, '/modalities/tata') |
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1367 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
| 128 | 1368 modalitiesReadback = DoGet(_REMOTE, '/modalities?expand') |
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1369 self.assertEqual('STORESCP', modalitiesReadback['tata']['AET']) |
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1370 self.assertEqual('localhost', modalitiesReadback['tata']['Host']) |
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1371 self.assertEqual(2000, modalitiesReadback['tata']['Port']) |
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1372 self.assertEqual('GenericNoWildcardInDates', modalitiesReadback['tata']['Manufacturer']) |
| 116 | 1373 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
| 13 | 1374 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
| 1375 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
| 1376 DoDelete(_REMOTE, '/modalities/toto') | |
| 1377 DoDelete(_REMOTE, '/modalities/tata') | |
| 1378 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
| 1379 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
| 1380 | |
| 1381 | |
| 1382 def test_update_peers(self): | |
| 1383 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
| 1384 try: | |
| 1385 DoDelete(_REMOTE, '/peers/toto') | |
| 1386 except: | |
| 1387 pass | |
| 1388 try: | |
| 1389 DoDelete(_REMOTE, '/peers/tata') | |
| 1390 except: | |
| 1391 pass | |
| 1392 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1393 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
| 1394 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
| 128 | 1395 self.assertTrue('tata' in DoGet(_REMOTE, '/peers')) |
| 1396 peersReadback = DoGet(_REMOTE, '/peers?expand') | |
| 1397 self.assertEqual('http://localhost:8042/', peersReadback['tata']['Url']) | |
| 1398 self.assertEqual('user', peersReadback['tata']['Username']) | |
| 1399 self.assertFalse('Password' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1400 self.assertFalse('CertificateFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1401 self.assertFalse('CertificateKeyFile' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1402 self.assertFalse('CertificateKeyPassword' in peersReadback['tata']) # make sure no sensitive data is included | |
| 1403 self.assertFalse('Pkcs11' in peersReadback['tata']) # make sure no sensitive data is included | |
| 13 | 1404 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) |
| 1405 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
| 1406 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
| 1407 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
| 1408 DoDelete(_REMOTE, '/peers/toto') | |
| 1409 DoDelete(_REMOTE, '/peers/tata') | |
| 1410 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
| 1411 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
| 1412 | |
| 1413 | |
| 1414 def test_mesterhazy_modification(self): | |
| 1415 # When I modify a series ( eg. curl | |
| 1416 # http://localhost:8042/series/uidhere/modify -X POST -d | |
| 1417 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
| 1418 # series is added to a new Study, instead of the existing | |
| 1419 # Study. Fixed in Orthanc 0.7.5 | |
| 1420 | |
| 1421 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1422 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1423 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1424 | |
| 1425 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
| 1426 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
| 1427 | |
| 1428 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
| 1429 | |
| 1430 | |
| 1431 def test_create(self): | |
| 1432 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 1433 json.dumps({ | |
| 1434 'PatientName' : 'Jodogne', | |
| 1435 'Modality' : 'CT', | |
| 58 | 1436 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
| 13 | 1437 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
| 1438 })) | |
| 1439 | |
| 1440 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 1441 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 1442 | |
| 1443 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
| 1444 self.assertEqual((5, 5), png.size) | |
| 1445 | |
| 38 | 1446 j = DoGet(_REMOTE, i['Path']) |
| 1447 self.assertEqual('Instance', j['Type']) | |
| 1448 self.assertEqual(j['ID'], i['ID']) | |
| 1449 | |
| 13 | 1450 |
| 1451 def test_pilates(self): | |
| 1452 # "SCU failed error when accessing orthanc with osirix" by | |
| 1453 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
| 1454 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
| 1455 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
| 1456 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 1457 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
| 1458 | |
| 1459 | |
| 1460 def test_shared_tags(self): | |
| 1461 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1462 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
| 1463 p = DoGet(_REMOTE, '/patients')[0] | |
| 1464 | |
| 1465 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1466 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
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1467 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)) |
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1468 |
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1469 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags' % p)['0010,0010']['Value']) |
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1470 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)['PatientName']) |
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1471 self.assertEqual('KNEE', DoGet(_REMOTE, '/patients/%s/shared-tags?short' % p)['0010,0010']) |
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1472 |
| 13 | 1473 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) |
| 1474 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1475 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1476 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1477 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
| 1478 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
| 1479 | |
| 1480 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
| 1481 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
| 1482 | |
| 1483 | |
| 1484 def test_modules(self): | |
| 1485 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1486 p = DoGet(_REMOTE, '/patients')[0] | |
| 1487 s = DoGet(_REMOTE, '/studies')[0] | |
| 1488 t = DoGet(_REMOTE, '/series')[0] | |
| 1489 | |
| 1490 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
| 1491 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
| 1492 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
| 1493 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
| 1494 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
| 1495 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
| 1496 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
| 1497 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
| 1498 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
| 1499 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
| 1500 | |
| 1501 | |
| 1502 def test_auto_directory(self): | |
| 1503 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1504 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
| 1505 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
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1506 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
| 13 | 1507 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
| 1508 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 1509 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1510 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1511 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1512 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1513 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1514 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1515 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
| 1516 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
| 1517 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
| 79 | 1518 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
| 13 | 1519 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
| 28 | 1520 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
| 1521 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
| 1522 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
| 1523 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
| 13 | 1524 |
| 1525 | |
| 1526 def test_echo(self): | |
| 1527 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
| 1528 | |
| 1529 | |
| 1530 def test_xml(self): | |
| 1531 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
| 1532 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
| 1533 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
| 1534 self.assertEqual(len(items), len(json)) | |
| 1535 | |
| 1536 self.assertTrue('dicom-conformance' in json) | |
| 1537 | |
| 1538 ok = False | |
| 1539 for i in items: | |
| 1540 if i.childNodes[0].data == 'dicom-conformance': | |
| 1541 ok = True | |
| 1542 self.assertTrue(ok) | |
| 1543 | |
| 1544 | |
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1545 def test_googlecode_issue_16(self): |
| 13 | 1546 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
| 1547 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
| 1548 self.assertEqual('0018,1063', t) | |
| 1549 | |
| 1550 | |
|
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1551 def test_googlecode_issue_22(self): |
| 13 | 1552 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
| 1553 a = [ | |
| 1554 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
| 1555 "c69eee9a51eea3e8611e82e578897254", | |
| 1556 "315666be83e2d0111c77bc0996d84901", | |
| 1557 "3e27aa959d911172c48a1436443c72b1", | |
| 1558 "958642c9e7e9d232d3869faff546058c", | |
| 1559 "5e7ea8e3e4230cae707d143481355c59", | |
| 1560 "eda37f83558d858a596175aed8b2ad47", | |
| 1561 "486713bd2895c4ecbe0e97715ac7f80a", | |
| 1562 "091ef729eb169e67da8a0faa9631f9a8", | |
| 1563 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
| 1564 "e2f39e85896fe58876654b94cd0b5013", | |
| 1565 "6fd2129e4950abbe1be053bc814d5da8", | |
| 1566 "c3331a8ba7a757f3d423735ab7fa81f9", | |
| 1567 "746f808582156734dd6b6fdfd3a0b72c", | |
| 1568 "8075ea2b227a70c60ea6b7b75a6bb190", | |
| 1569 "806b8b3e300c615099c11a5ec23465aa", | |
| 1570 "7c836aa298ba6eef96434579af631a11", | |
| 1571 "a0357dc9f4f72d73a885c33d7c287446", | |
| 1572 "f25ba3be1cc7d7fad95706adc199ea7d", | |
| 1573 "8b114c526b8cbed6cad8a3248b7b480c", | |
| 1574 "44e6670f127e612a2b4aa60a0d207698", | |
| 1575 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
| 1576 "95c796c2fa8f59018b15cf2987b1f79b", | |
| 1577 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
| 1578 ] | |
| 1579 | |
| 1580 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 1581 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
| 1582 | |
| 1583 for i in range(len(a)): | |
| 1584 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
| 1585 | |
| 1586 | |
|
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1587 def test_googlecode_issue_19(self): |
|
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1588 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
| 13 | 1589 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
| 1590 | |
| 1591 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
|
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1592 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
| 13 | 1593 |
| 1594 | |
|
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1595 def test_googlecode_issue_37(self): |
| 13 | 1596 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
| 1597 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
| 1598 | |
| 1599 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1600 'CaseSensitive' : True, | |
| 1601 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
| 1602 self.assertEqual(1, len(a)) | |
| 14 | 1603 |
| 1604 | |
| 1605 def test_rest_find(self): | |
| 1606 # Upload 8 instances | |
| 1607 for i in range(2): | |
| 1608 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1609 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1610 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1611 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1612 | |
| 1613 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1614 'CaseSensitive' : False, | |
|
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1615 'Query' : { 'PatientName' : 'BRAINIX' }}) |
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1616 self.assertEqual(1, len(a)) |
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1617 |
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1618 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1619 'CaseSensitive' : False, |
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1620 'Query' : { 'PatientName' : 'BRAINIX\\KNEE\\NOPE' }}) |
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1621 self.assertEqual(2, len(a)) |
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1622 |
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1623 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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1624 'CaseSensitive' : False, |
| 14 | 1625 'Query' : { 'PatientName' : '*n*' }}) |
| 1626 self.assertEqual(2, len(a)) | |
| 1627 | |
| 1628 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1629 'CaseSensitive' : True, | |
| 1630 'Query' : { 'PatientName' : '*n*' }}) | |
| 1631 self.assertEqual(0, len(a)) | |
| 1632 | |
| 1633 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
| 1634 'Level' : 'Patient', | |
| 1635 'CaseSensitive' : False, | |
| 1636 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1637 self.assertEqual(1, len(a)) | |
| 1638 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
| 1639 | |
| 1640 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
| 1641 'CaseSensitive' : True, | |
| 1642 'Query' : { 'PatientName' : '*ne*' }}) | |
| 1643 self.assertEqual(0, len(a)) | |
| 1644 | |
| 1645 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
| 1646 'CaseSensitive' : True, | |
| 1647 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1648 self.assertEqual(1, len(a)) | |
| 1649 | |
| 1650 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
| 1651 'CaseSensitive' : True, | |
| 1652 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1653 self.assertEqual(2, len(a)) | |
| 1654 | |
| 1655 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
| 1656 'CaseSensitive' : True, | |
| 1657 'Query' : { 'PatientName' : '*NE*' }}) | |
| 1658 self.assertEqual(4, len(a)) | |
| 1659 | |
| 1660 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
| 1661 self.assertEqual(2, len(a)) | |
| 1662 | |
| 1663 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
| 1664 self.assertEqual(2, len(a)) | |
| 1665 | |
| 1666 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
| 1667 self.assertEqual(4, len(a)) | |
| 1668 | |
| 1669 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
| 1670 self.assertEqual(8, len(a)) | |
| 1671 | |
|
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1672 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1673 'Expand' : True, |
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1674 'Query' : { 'StudyDate' : '20061201-20061201' }}) |
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1675 self.assertEqual(1, len(a)) |
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1676 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1677 |
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1678 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1679 'Expand' : True, |
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1680 'Query' : { 'StudyDate' : '20061201-20091201' }}) |
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1681 self.assertEqual(2, len(a)) |
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1682 for i in range(2): |
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1683 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1684 |
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1685 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1686 'Query' : { 'StudyDate' : '20061202-20061202' }}) |
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1687 self.assertEqual(0, len(a)) |
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1688 |
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1689 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1690 'Expand' : True, |
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1691 'Query' : { 'StudyDate' : '-20061201' }}) |
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1692 self.assertEqual(1, len(a)) |
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1693 self.assertEqual('BRAINIX', a[0]['PatientMainDicomTags']['PatientName']) |
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1694 |
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1695 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1696 'Expand' : True, |
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1697 'Query' : { 'StudyDate' : '-20051201' }}) |
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1698 self.assertEqual(0, len(a)) |
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1699 |
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1700 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1701 'Expand' : True, |
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1702 'Query' : { 'StudyDate' : '20061201-' }}) |
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1703 self.assertEqual(2, len(a)) |
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1704 for i in range(2): |
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1705 self.assertTrue(a[i]['PatientMainDicomTags']['PatientName'] in ['BRAINIX', 'KNEE']) |
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1706 |
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1707 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1708 'Expand' : True, |
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1709 'Query' : { 'StudyDate' : '20061202-' }}) |
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1710 self.assertEqual(1, len(a)) |
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1711 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1712 |
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1713 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1714 'Expand' : True, |
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1715 'Query' : { 'StudyDate' : '20080819-' }}) |
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1716 self.assertEqual(1, len(a)) |
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1717 self.assertEqual('KNEE', a[0]['PatientMainDicomTags']['PatientName']) |
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1718 |
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1719 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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1720 'Expand' : True, |
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1721 'Query' : { 'StudyDate' : '20080820-' }}) |
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1722 self.assertEqual(0, len(a)) |
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1723 |
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1724 |
| 14 | 1725 |
| 1726 def test_rest_query_retrieve(self): | |
| 1727 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1728 | |
| 1729 # Upload 8 instances | |
| 1730 for i in range(2): | |
| 1731 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
| 1732 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
| 1733 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
| 1734 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
| 1735 | |
| 1736 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 1737 for p in DoGet(_REMOTE, '/patients'): | |
| 1738 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 1739 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 1740 | |
| 1741 for q in DoGet(_REMOTE, '/queries'): | |
| 1742 DoDelete(_REMOTE, '/queries/%s' % q) | |
| 1743 | |
| 1744 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1745 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1746 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
| 27 | 1747 'Query' : { |
| 1748 'PatientName' : '*NE*', | |
| 1749 'StudyDate' : '*', | |
| 1750 }})['ID'] | |
| 14 | 1751 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
| 1752 | |
| 1753 b = DoGet(_REMOTE, '/queries/%s' % a) | |
| 1754 self.assertTrue('answers' in b) | |
| 1755 self.assertTrue('level' in b) | |
| 1756 self.assertTrue('modality' in b) | |
| 1757 self.assertTrue('query' in b) | |
| 1758 self.assertTrue('retrieve' in b) | |
| 1759 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
| 1760 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
| 1761 | |
| 1762 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
| 27 | 1763 self.assertEqual(2, len(q)) |
| 14 | 1764 self.assertTrue('PatientName' in q) |
| 27 | 1765 self.assertTrue('StudyDate' in q) |
| 14 | 1766 self.assertEqual('*NE*', q['PatientName']) |
| 27 | 1767 self.assertEqual('*', q['StudyDate']) |
| 14 | 1768 |
| 1769 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
| 1770 | |
| 1771 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
| 1772 self.assertTrue('content' in s) | |
| 1773 self.assertTrue('retrieve' in s) | |
| 1774 | |
| 1775 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
| 1776 self.assertEqual('887', s['PatientID']) | |
| 1777 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
| 1778 | |
| 1779 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 1780 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
| 1781 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 1782 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1783 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 1784 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 1785 | |
| 112 | 1786 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
| 14 | 1787 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
| 1788 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 1789 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1790 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 1791 | |
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1792 # New in Orthanc 1.4.3 |
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1793 s = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % a) |
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1794 self.assertEqual(2, len(s)) |
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1795 for i in range(2): |
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1796 self.assertEqual('SERIES', s[i]['QueryRetrieveLevel']) |
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1797 self.assertEqual('887', s[i]['PatientID']) |
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1798 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s[i]['StudyInstanceUID']) |
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1799 |
| 14 | 1800 DoDelete(_REMOTE, '/queries/%s' % a) |
| 1801 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
| 1802 | |
| 1803 | |
| 1804 def test_parent(self): | |
| 1805 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1806 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
| 1807 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
| 1808 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 1809 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
|
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1810 self.assertEqual(instance, u) |
| 14 | 1811 |
| 1812 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
| 1813 self.assertEqual('Patient', a['Type']) | |
| 1814 self.assertEqual(patient, a['ID']) | |
| 1815 | |
| 1816 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
| 1817 self.assertEqual('Patient', a['Type']) | |
| 1818 self.assertEqual(patient, a['ID']) | |
| 1819 | |
| 1820 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
| 1821 self.assertEqual('Study', a['Type']) | |
| 1822 self.assertEqual(study, a['ID']) | |
| 1823 | |
| 1824 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
| 1825 self.assertEqual('Patient', a['Type']) | |
| 1826 self.assertEqual(patient, a['ID']) | |
| 1827 | |
| 1828 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
| 1829 self.assertEqual('Study', a['Type']) | |
| 1830 self.assertEqual(study, a['ID']) | |
| 1831 | |
| 1832 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
| 1833 self.assertEqual('Series', a['Type']) | |
| 1834 self.assertEqual(series, a['ID']) | |
| 1835 | |
| 1836 | |
| 1837 def test_shanon(self): | |
| 1838 def Anonymize(instance, replacements = {}): | |
| 119 | 1839 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
| 1840 'Replace' : replacements, | |
| 1841 'Force' : True, | |
| 1842 }, 'application/json') | |
| 14 | 1843 |
| 1844 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1845 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1846 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1847 | |
| 1848 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1849 ids = [ 'ozp00SjY2xG', | |
| 1850 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1851 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1852 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1853 | |
| 1854 a = ExtractDicomTags(Anonymize(u), tags) | |
| 1855 for i in range(4): | |
| 1856 self.assertNotEqual(ids[i], a[i]) | |
| 1857 self.assertTrue(a[4].startswith('Orthanc')) | |
| 1858 | |
| 1859 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
| 1860 for i in range(4): | |
| 1861 self.assertNotEqual(ids[i], a[i]) | |
| 1862 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1863 | |
| 1864 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1865 self.assertEqual('instance', a[3]) | |
| 1866 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1867 | |
| 1868 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1869 self.assertEqual('series', a[2]) | |
| 1870 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1871 | |
| 1872 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1873 self.assertEqual('study', a[1]) | |
| 1874 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1875 | |
| 1876 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
| 1877 self.assertEqual('patient', a[0]) | |
| 1878 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1879 | |
| 1880 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
| 1881 'StudyInstanceUID' : 'study', | |
| 1882 'SeriesInstanceUID' : 'series', | |
| 1883 'SOPInstanceUID' : 'instance' }), tags) | |
| 1884 self.assertEqual('patient', a[0]) | |
| 1885 self.assertFalse(a[4].startswith('Orthanc')) | |
| 1886 | |
| 1887 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1888 | |
| 1889 | |
| 1890 def test_shanon_2(self): | |
| 1891 def Modify(instance, replacements = {}): | |
| 119 | 1892 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
| 1893 'Replace' : replacements, | |
| 1894 'Force': True, | |
| 1895 }, 'application/json') | |
| 14 | 1896 |
| 1897 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
| 1898 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 1899 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1900 | |
| 1901 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
| 1902 ids = [ 'ozp00SjY2xG', | |
| 1903 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
| 1904 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
| 1905 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
| 1906 | |
| 1907 a = ExtractDicomTags(Modify(u), tags) | |
| 1908 self.assertEqual(ids[0], a[0]) | |
| 1909 self.assertEqual(ids[1], a[1]) | |
| 1910 self.assertEqual(ids[2], a[2]) | |
| 1911 self.assertNotEqual(ids[3], a[3]) | |
| 1912 self.assertEqual(0, len(a[4])) | |
| 1913 | |
| 1914 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
| 1915 self.assertEqual(ids[0], a[0]) | |
| 1916 self.assertEqual(ids[1], a[1]) | |
| 1917 self.assertEqual(ids[2], a[2]) | |
| 1918 self.assertEqual('instance', a[3]) | |
| 1919 | |
| 1920 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
| 1921 self.assertEqual(ids[0], a[0]) | |
| 1922 self.assertEqual(ids[1], a[1]) | |
| 1923 self.assertEqual('series', a[2]) | |
| 1924 self.assertNotEqual(ids[3], a[3]) | |
| 1925 | |
| 1926 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
| 1927 self.assertEqual(ids[0], a[0]) | |
| 1928 self.assertEqual('study', a[1]) | |
| 1929 self.assertNotEqual(ids[2], a[2]) | |
| 1930 self.assertNotEqual(ids[3], a[3]) | |
| 1931 | |
| 1932 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
| 1933 self.assertEqual('patient', a[0]) | |
| 1934 self.assertNotEqual(ids[1], a[1]) | |
| 1935 self.assertNotEqual(ids[2], a[2]) | |
| 1936 self.assertNotEqual(ids[3], a[3]) | |
| 1937 | |
| 1938 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
| 1939 'StudyInstanceUID' : 'study', | |
| 1940 'SeriesInstanceUID' : 'series', | |
| 1941 'SOPInstanceUID' : 'instance' }), tags) | |
| 1942 self.assertEqual('patient', a[0]) | |
| 1943 self.assertEqual('study', a[1]) | |
| 1944 self.assertEqual('series', a[2]) | |
| 1945 self.assertEqual('instance', a[3]) | |
| 1946 | |
| 1947 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 1948 | |
| 1949 | |
| 1950 def test_instances_tags(self): | |
| 1951 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
| 1952 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
| 1953 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
| 1954 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
| 1955 | |
| 1956 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
| 1957 self.assertEqual(2, len(i)) | |
| 1958 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1959 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1960 | |
| 1961 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
| 1962 self.assertEqual(2, len(i)) | |
| 1963 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1964 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
| 1965 | |
| 1966 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 1967 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
| 1968 self.assertEqual(1, len(i)) | |
| 1969 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1970 | |
| 1971 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
| 1972 self.assertEqual(1, len(i)) | |
| 1973 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
| 1974 | |
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1975 i = DoGet(_REMOTE, '/patients/%s/instances-tags?short' % DoGet(_REMOTE, '/series')[1]) |
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1976 self.assertEqual(1, len(i)) |
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1977 self.assertEqual('887', i[i.keys()[0]]['0010,0020']) |
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1978 |
| 14 | 1979 |
| 1980 def test_lookup(self): | |
| 1981 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1982 self.assertEqual(0, len(a)) | |
| 1983 | |
| 1984 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
| 1985 | |
| 1986 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
| 1987 self.assertEqual(1, len(a)) | |
| 1988 self.assertEqual('Patient', a[0]['Type']) | |
| 1989 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
| 1990 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
| 1991 | |
| 1992 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
| 1993 self.assertEqual(1, len(a)) | |
| 1994 self.assertEqual('Study', a[0]['Type']) | |
| 1995 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
| 1996 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
| 1997 | |
| 1998 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
| 1999 self.assertEqual(1, len(a)) | |
| 2000 self.assertEqual('Series', a[0]['Type']) | |
| 2001 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
| 2002 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
| 2003 | |
| 2004 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
| 2005 self.assertEqual(1, len(a)) | |
| 2006 self.assertEqual('Instance', a[0]['Type']) | |
| 2007 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
| 2008 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
| 2009 | |
| 2010 DropOrthanc(_REMOTE) | |
| 2011 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
| 2012 self.assertEqual(0, len(a)) | |
| 2013 | |
| 15 | 2014 |
| 2015 def test_autorouting(self): | |
| 2016 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
| 2017 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
| 2018 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
| 2019 | |
| 2020 # Check that this version is >= 0.8.0 | |
| 2021 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
| 2022 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
| 2023 | |
| 2024 UploadInstance(_REMOTE, knee1) | |
| 2025 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2026 | |
| 2027 DropOrthanc(_REMOTE) | |
| 2028 DropOrthanc(_LOCAL) | |
| 174 | 2029 InstallLuaScriptFromPath(_REMOTE, 'Lua/Autorouting.lua') |
| 15 | 2030 UploadInstance(_REMOTE, knee1) |
| 2031 UploadInstance(_REMOTE, knee2) | |
| 2032 UploadInstance(_REMOTE, other) | |
| 2033 WaitEmpty(_REMOTE) | |
| 174 | 2034 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2035 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) |
| 2036 | |
| 2037 DropOrthanc(_REMOTE) | |
| 2038 DropOrthanc(_LOCAL) | |
| 174 | 2039 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingConditional.lua') |
| 15 | 2040 UploadInstance(_REMOTE, knee1) |
| 2041 UploadInstance(_REMOTE, knee2) | |
| 2042 UploadInstance(_REMOTE, other) | |
| 2043 WaitEmpty(_REMOTE) | |
| 174 | 2044 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2045 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
| 2046 | |
| 2047 DropOrthanc(_REMOTE) | |
| 2048 DropOrthanc(_LOCAL) | |
| 174 | 2049 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingModification.lua') |
| 15 | 2050 UploadInstance(_REMOTE, knee1) |
| 2051 WaitEmpty(_REMOTE) | |
| 174 | 2052 UninstallLuaCallbacks(_REMOTE) |
| 15 | 2053 i = DoGet(_LOCAL, '/instances') |
| 2054 self.assertEqual(1, len(i)) | |
| 2055 | |
| 2056 with tempfile.NamedTemporaryFile(delete = True) as f: | |
| 2057 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
| 2058 f.flush() | |
| 45 | 2059 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
| 15 | 2060 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
| 2061 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
| 2062 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
| 17 | 2063 |
| 2064 | |
| 2065 def test_storescu_rf(self): | |
| 2066 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
| 2067 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
| 2068 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
| 2069 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
| 18 | 2070 |
| 2071 | |
| 2072 def test_anonymize_instance(self): | |
| 2073 def AnonymizeAndUpload(instanceId, parameters): | |
| 2074 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
| 2075 'application/json'), 'application/dicom')['ID'] | |
| 2076 | |
| 2077 def ModifyAndUpload(instanceId, parameters): | |
| 2078 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
| 2079 'application/json'), 'application/dicom')['ID'] | |
| 2080 | |
| 2081 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
| 2082 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
| 2083 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
| 2084 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
| 2085 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
| 2086 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2087 | |
| 2088 b = AnonymizeAndUpload(a, '{}') | |
| 2089 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2090 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2091 | |
| 2092 # Keep private tag (only OK since Orthanc 0.8.0) | |
| 2093 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
| 2094 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2095 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2096 | |
| 2097 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
| 2098 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2099 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2100 | |
| 2101 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
| 2102 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
| 2103 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
| 2104 | |
| 2105 # Examples from the Wiki | |
|
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2106 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
| 18 | 2107 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2108 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2109 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2110 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2111 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2112 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2113 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
| 2114 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2115 | |
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2116 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
| 18 | 2117 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2118 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2119 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2120 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
| 2121 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
| 2122 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2123 | |
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2124 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
| 18 | 2125 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
| 2126 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
| 2127 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
| 2128 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
| 2129 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
| 2130 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
| 2131 | |
| 2132 | |
| 2133 # Test modify non-existing | |
| 2134 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2135 json.dumps({ | |
| 2136 'PatientName' : 'Jodogne', | |
| 2137 'Modality' : 'CT', | |
| 2138 }))['ID'] | |
| 2139 | |
| 2140 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
| 2141 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
| 2142 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
| 2143 | |
| 2144 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
| 2145 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
| 2146 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
| 2147 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
| 2148 | |
|
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2149 |
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2150 def test_incoming_jpeg(self): |
|
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2151 def storescu(image, acceptUnknownSopClassUid): |
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2152 if acceptUnknownSopClassUid: |
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2153 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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2154 else: |
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|
2155 tmp = [ '-xs' ] |
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2156 |
|
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2157 with open(os.devnull, 'w') as FNULL: |
|
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2158 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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|
2159 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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|
2160 GetDatabasePath(image) ], |
|
21
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2161 stderr = FNULL) |
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2162 |
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2163 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2164 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxDisable.lua') |
|
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2165 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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2166 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
|
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2167 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
| 174 | 2168 InstallLuaScriptFromPath(_REMOTE, 'Lua/TransferSyntaxEnable.lua') |
|
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2169 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
|
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2170 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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|
2171 storescu('UnknownSopClassUid.dcm', True) |
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|
2172 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
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|
2173 |
|
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|
2174 |
|
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|
2175 def test_storescu_jpeg(self): |
|
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2176 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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|
2177 |
|
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|
2178 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
| 64 | 2179 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
| 2180 | |
| 2181 # This is JPEG lossless | |
|
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|
2182 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header' % i)['0002,0010']['Value']) |
| 64 | 2183 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) |
|
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2184 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?short' % i)['0002,0010']) |
| 64 | 2185 |
|
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2186 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
|
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2187 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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2188 |
|
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2189 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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|
2190 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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2191 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
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2192 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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2193 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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2194 |
|
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2195 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
|
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2196 |
|
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|
2197 DropOrthanc(_REMOTE) |
|
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2198 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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2199 |
|
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|
2200 |
|
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|
2201 def test_pixel_data(self): |
|
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2202 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
|
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2203 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
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|
2204 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
|
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|
2205 |
|
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|
2206 phenixSize = 358 * 512 * 2 |
|
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|
2207 colorSize = 1000 * 1000 * 3 |
|
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|
2208 jpegSize = 51918 |
|
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|
2209 |
|
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|
2210 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2211 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2212 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2213 |
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|
2214 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
|
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2215 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2216 |
|
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|
2217 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2218 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2219 |
|
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2220 |
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|
2221 def test_decode_brainix(self): |
|
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2222 brainix = [ |
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|
2223 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2224 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2225 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2226 ] |
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|
2227 h = '6fb11b932d535c2be04beabd99793ff8' |
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2228 maxValue = 426.0 |
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2229 |
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2230 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2231 for i in brainix: |
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2232 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2233 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2234 |
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2235 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2236 for i in brainix: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2237 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
|
2a29bcff60a7
tests of image decoding
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parents:
18
diff
changeset
|
2238 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2239 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2240 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2241 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2242 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2243 for i in brainix: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2244 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2245 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2246 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2247 def test_decode_color(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2248 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2249 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2250 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2251 for i in [ imagej, color ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2252 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2253 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2254 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2255 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2256 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2257 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2258 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2259 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2260 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2261 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2262 def test_decode_rf(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2263 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2264 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2265 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2266 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2267 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2268 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2269 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2270 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2271 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2272 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2273 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2274 def test_decode_multiframe(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2275 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2276 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2277 # Test the first frame |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2278 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2279 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2280 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2281 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2282 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2283 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2284 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2285 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2286 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2287 # Test the last frame |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2288 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2289 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2290 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2291 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2292 def test_decode_signed(self): |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2293 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2294 minValue = -2000 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2295 maxValue = 4042 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2296 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2297 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2298 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2299 |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2300 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2301 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2302 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2303 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2304 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2305 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2306 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2307 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
|
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2308 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2309 |
|
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
2310 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
| 22 | 2311 |
| 2312 | |
|
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
2313 def test_googlecode_issue_32(self): |
|
92
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2314 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
|
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parents:
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diff
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|
2315 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
|
dbcbffb889da
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parents:
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diff
changeset
|
2316 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
|
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diff
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|
2317 |
| 22 | 2318 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
| 2319 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
| 2320 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
| 2321 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
| 2322 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
| 2323 | |
|
92
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diff
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|
2324 # Replay the same test using Latin1 as default encoding: This must fail |
|
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parents:
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diff
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|
2325 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
|
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diff
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|
2326 |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2327 DoDelete(_REMOTE, '/instances/%s' % f) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
2328 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2329 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2330 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2331 |
|
dbcbffb889da
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2332 |
| 22 | 2333 def test_encodings(self): |
| 23 | 2334 # Latin-1 (ISO_IR 100) |
| 22 | 2335 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2336 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
| 2337 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
| 23 | 2338 |
| 2339 # Latin-2 (ISO_IR 101) | |
| 2340 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
| 2341 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
| 2342 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
| 2343 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
| 2344 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
| 2345 | |
|
26
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2346 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2347 def test_storescu_custom_aet(self): |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2348 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2349 # setting of the local AET during C-Store SCU (both in Lua and |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2350 # in the REST API)." |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2351 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2352 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2353 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2354 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2355 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2356 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2357 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2358 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2359 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2360 'LocalAet' : 'YOP', |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2361 'Resources' : [ a['ID'], b['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2362 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2363 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2364 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2365 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2366 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2367 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2368 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2369 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2370 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2371 'Resources' : [ c['ID'] ] |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2372 }) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2373 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2374 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2375 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2376 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2377 DropOrthanc(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2378 DropOrthanc(_LOCAL) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2379 |
| 174 | 2380 InstallLuaScriptFromPath(_REMOTE, 'Lua/AutoroutingChangeAet.lua') |
|
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2381 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2382 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2383 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2384 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2385 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2386 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2387 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2388 |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2389 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2390 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2391 WaitEmpty(_REMOTE) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2392 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
|
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2393 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
|
34
1047d7bc5210
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diff
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|
2394 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
2395 def test_resources_since_limit(self): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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28
diff
changeset
|
2396 # Upload 16 instances |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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28
diff
changeset
|
2397 for i in range(4): |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2398 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2399 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2400 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2401 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2402 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2403 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
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diff
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|
2404 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2405 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2406 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2407 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2408 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2409 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2410 |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2411 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2412 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2413 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2414 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2415 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2416 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
|
1047d7bc5210
test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2417 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
|
1047d7bc5210
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2418 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2419 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2420 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2421 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
|
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parents:
28
diff
changeset
|
2422 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
|
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parents:
28
diff
changeset
|
2423 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2424 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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28
diff
changeset
|
2425 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
|
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28
diff
changeset
|
2426 |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
28
diff
changeset
|
2427 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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28
diff
changeset
|
2428 s = {} |
|
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test limit and since arguments while retrieving DICOM resources in the REST API
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28
diff
changeset
|
2429 since = 0 |
|
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28
diff
changeset
|
2430 while True: |
|
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parents:
28
diff
changeset
|
2431 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
|
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diff
changeset
|
2432 if len(t) == 0: |
|
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diff
changeset
|
2433 break |
|
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28
diff
changeset
|
2434 |
|
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28
diff
changeset
|
2435 since += len(t) |
|
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28
diff
changeset
|
2436 for i in t: |
|
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diff
changeset
|
2437 s[i] = None |
|
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diff
changeset
|
2438 |
|
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diff
changeset
|
2439 self.assertEqual(16, len(s)) |
|
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diff
changeset
|
2440 for instance in DoGet(_REMOTE, '/instances'): |
|
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diff
changeset
|
2441 self.assertTrue(instance in s) |
| 36 | 2442 |
| 2443 | |
| 2444 def test_create_pdf(self): | |
| 2445 # Upload 4 instances | |
| 2446 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
| 2447 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2448 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2449 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2450 | |
| 2451 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
| 2452 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
| 2453 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
| 2454 | |
| 2455 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
| 2456 pdf = f.read() | |
| 2457 | |
| 2458 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2459 json.dumps({ | |
| 2460 'Tags' : { | |
| 2461 'PatientName' : 'Jodogne', | |
| 2462 'Modality' : 'CT', | |
| 2463 }, | |
| 2464 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2465 })) | |
| 2466 | |
| 2467 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2468 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
| 2469 | |
| 2470 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
| 2471 self.assertEqual(len(b), len(pdf) + 1) | |
| 2472 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
| 2473 | |
| 2474 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
| 2475 json.dumps({ | |
| 2476 'Parent' : brainixPatient, | |
| 2477 'Tags' : { | |
| 2478 'PatientName' : 'Jodogne', | |
| 2479 } | |
| 2480 }))) | |
| 2481 | |
| 2482 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2483 json.dumps({ | |
| 2484 'Parent' : brainixPatient, | |
| 2485 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
| 2486 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2487 })) | |
| 2488 | |
| 2489 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
| 2490 | |
| 2491 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2492 json.dumps({ | |
| 2493 'Parent' : brainixStudy, | |
| 2494 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
| 2495 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
| 2496 })) | |
| 2497 | |
| 2498 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
| 2499 | |
| 2500 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2501 json.dumps({ | |
| 2502 'Parent' : brainixEpi, | |
| 37 | 2503 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
| 36 | 2504 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
| 2505 })) | |
| 2506 | |
| 2507 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
| 2508 | |
| 2509 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
| 2510 self.assertEqual(len(b), len(pdf)) | |
| 2511 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
| 2512 | |
| 2513 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
| 38 | 2514 |
| 2515 | |
| 2516 def test_create_series(self): | |
| 2517 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2518 json.dumps({ | |
| 2519 'Tags' : { | |
| 40 | 2520 'SpecificCharacterSet' : 'ISO_IR 100', |
| 2521 'PatientName' : 'Sébastien Jodogne', | |
| 38 | 2522 'Modality' : 'CT', |
| 2523 }, | |
| 2524 'Content' : [ | |
| 40 | 2525 { |
| 2526 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
| 2527 'Tags' : { 'ImageComments' : 'Tutu' } | |
| 2528 }, | |
| 38 | 2529 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
| 2530 ] | |
| 2531 })) | |
| 2532 | |
| 2533 s = DoGet(_REMOTE, i['Path']) | |
| 2534 self.assertEqual('Series', s['Type']) | |
| 2535 self.assertEqual(s['ID'], i['ID']) | |
| 2536 self.assertEqual(2, len(s['Instances'])) | |
| 39 | 2537 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
| 2538 self.assertEqual('Complete', s['Status']) | |
| 40 | 2539 |
| 2540 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
| 2541 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
| 2542 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
| 2543 if 'ImageComments' in a: | |
| 2544 self.assertEqual('Tutu', a['ImageComments']) | |
| 2545 else: | |
| 2546 self.assertEqual('Tutu', b['ImageComments']) | |
| 2547 | |
| 2548 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
| 2549 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
| 2550 'Sébastien Jodogne') | |
| 47 | 2551 |
| 2552 | |
| 2553 def test_create_binary(self): | |
| 2554 binary = ''.join(map(chr, range(256))) | |
| 2555 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
| 2556 tags = { | |
| 2557 'PatientName' : 'Jodogne', | |
| 2558 '8899-8899' : encoded | |
| 2559 } | |
| 2560 | |
| 2561 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2562 json.dumps({ | |
| 2563 'Tags' : tags | |
| 2564 })) | |
| 2565 | |
| 2566 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2567 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
| 2568 | |
| 2569 i = DoPost(_REMOTE, '/tools/create-dicom', | |
| 2570 json.dumps({ | |
| 2571 'InterpretBinaryTags' : False, | |
| 2572 'Tags' : tags | |
| 2573 })) | |
| 2574 | |
| 2575 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
| 2576 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
|
48
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2577 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2578 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2579 def test_patient_ids_collision(self): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2580 # Upload 3 instances from 3 different studies, but with the |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2581 # same PatientID |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2582 for i in range(3): |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2583 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2584 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2585 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2586 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2587 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2588 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2589 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2590 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2591 'CaseSensitive' : True, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2592 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2593 self.assertEqual(2, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2594 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2595 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2596 'CaseSensitive' : False, |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2597 'Query' : { 'PatientName' : 'Foo' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2598 self.assertEqual(1, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2599 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2600 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2601 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2602 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2603 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2604 'Query' : { 'PatientName' : '*' }}) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2605 self.assertEqual(3, len(a)) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2606 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2607 self.assertTrue('FOO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2608 self.assertTrue('HELLO^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2609 self.assertTrue('WORLD^SERIES' in d) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2610 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2611 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2612 self.assertEqual(1, len(set(d))) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2613 self.assertEqual('COMMON', d[0]) |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2614 |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2615 for i in a: |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2616 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2617 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
|
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2618 self.assertEqual('%s^SERIES' % p, d) |
|
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2619 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2620 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2621 def test_bitbucket_issue_4(self): |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2622 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2623 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2624 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2625 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2626 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2627 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2628 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2629 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2630 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2631 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2632 p = DoGet(_REMOTE, '/patients') |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2633 self.assertEqual(2, len(p)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2634 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2635 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2636 self.assertEqual(3, len(i1)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2637 self.assertEqual(3, len(i2)) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2638 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2639 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2640 |
|
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2641 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2642 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2643 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2644 def test_create_sequence(self): |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2645 i = DoPost(_REMOTE, '/tools/create-dicom', |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2646 json.dumps({ |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2647 'Tags' : { |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2648 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2649 'PatientName': 'Jodogne^', |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2650 'ReferencedStudySequence': GenerateTestSequence(), |
|
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2651 } |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2652 }))['ID'] |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2653 |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2654 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
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49
diff
changeset
|
2655 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2656 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2657 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2658 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
|
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2659 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
|
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2660 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2661 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2662 def test_modify_sequence(self): |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2663 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2664 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2665 |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2666 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2667 json.dumps({ |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2668 "Replace" : { |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2669 "PatientName" : "hello", |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2670 'ReferencedStudySequence': GenerateTestSequence(), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2671 }, |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2672 }), |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2673 'application/json') |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2674 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2675 DoDelete(_REMOTE, '/instances/%s' % i) |
|
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2676 |
| 52 | 2677 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
| 2678 | |
| 2679 | |
| 2680 def test_compression(self): | |
| 2681 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
| 2682 | |
| 2683 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
| 2684 | |
| 2685 # "StorageCompression" is enabled in the Orthanc to be tested, | |
| 2686 # uncompress the data before running the test | |
| 2687 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
| 2688 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2689 | |
| 2690 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
| 2691 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
| 2692 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
| 2693 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
| 2694 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2695 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2696 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2697 | |
| 2698 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
| 2699 self.assertTrue('compress' in ops) | |
| 2700 self.assertTrue('uncompress' in ops) | |
| 2701 self.assertTrue('is-compressed' in ops) | |
| 2702 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2703 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2704 | |
| 2705 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
| 2706 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2707 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2708 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2709 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 2710 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
| 2711 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2712 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2713 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2714 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2715 | |
| 2716 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
| 2717 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
| 2718 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
| 2719 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
| 2720 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
| 2721 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
| 2722 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
| 2723 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
| 2724 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
| 2725 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
| 53 | 2726 |
| 2727 | |
| 2728 def test_ordered_slices(self): | |
| 2729 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 2730 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2731 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2732 self.assertEqual('Sequence', o['Type']) | |
| 2733 self.assertEqual(1, len(o['Dicom'])) | |
| 2734 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
| 2735 self.assertEqual(76, len(o['Slices'])) | |
| 2736 for j in range(76): | |
| 2737 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
| 2738 | |
| 68 | 2739 self.assertEqual(1, len(o['SlicesShort'])) |
| 2740 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
| 2741 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2742 self.assertEqual(76, o['SlicesShort'][0][2]) | |
| 2743 | |
| 53 | 2744 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
| 2745 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
| 2746 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
| 2747 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2748 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2749 | |
| 2750 self.assertEqual('Volume', o['Type']) | |
| 2751 self.assertEqual(3, len(o['Dicom'])) | |
| 2752 self.assertEqual(3, len(o['Slices'])) | |
| 2753 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
| 2754 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2755 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
| 2756 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
| 2757 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
| 2758 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
| 2759 | |
| 68 | 2760 self.assertEqual(3, len(o['SlicesShort'])) |
| 2761 self.assertEqual(k, o['SlicesShort'][0][0]) | |
| 2762 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2763 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2764 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2765 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2766 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2767 self.assertEqual(i, o['SlicesShort'][2][0]) | |
| 2768 self.assertEqual(0, o['SlicesShort'][2][1]) | |
| 2769 self.assertEqual(1, o['SlicesShort'][2][2]) | |
| 2770 | |
| 53 | 2771 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
| 2772 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
| 2773 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
| 2774 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
| 2775 | |
| 2776 self.assertEqual('Sequence', o['Type']) | |
| 2777 self.assertEqual(2, len(o['Dicom'])) | |
| 2778 self.assertEqual(2, len(o['Slices'])) | |
| 2779 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
| 2780 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
| 2781 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
| 2782 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2783 |
| 68 | 2784 self.assertEqual(2, len(o['SlicesShort'])) |
| 2785 self.assertEqual(i, o['SlicesShort'][0][0]) | |
| 2786 self.assertEqual(0, o['SlicesShort'][0][1]) | |
| 2787 self.assertEqual(1, o['SlicesShort'][0][2]) | |
| 2788 self.assertEqual(j, o['SlicesShort'][1][0]) | |
| 2789 self.assertEqual(0, o['SlicesShort'][1][1]) | |
| 2790 self.assertEqual(1, o['SlicesShort'][1][2]) | |
| 2791 | |
| 2792 | |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2793 |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2794 def test_incoming_movescu_accession(self): |
|
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2795 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
c5f8a6b0d85e
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parents:
53
diff
changeset
|
2796 |
|
137
412d5f70447e
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parents:
136
diff
changeset
|
2797 # No matching patient, so no job is created |
|
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2798 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2799 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2800 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2801 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
|
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test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2802 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
|
137
412d5f70447e
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parents:
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diff
changeset
|
2803 |
|
412d5f70447e
testing asynchronous c-move
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diff
changeset
|
2804 # 1 Matching patient, track the job |
| 138 | 2805 self.assertTrue(MonitorJob(_REMOTE, lambda: CallMoveScu([ |
| 2806 '--study', | |
| 2807 '-k', '0008,0052=STUDY', | |
| 2808 '-k', 'AccessionNumber=A10003245599' | |
| 2809 ]))) | |
|
137
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diff
changeset
|
2810 |
|
54
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parents:
53
diff
changeset
|
2811 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
|
c5f8a6b0d85e
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diff
changeset
|
2812 |
| 55 | 2813 |
| 2814 def test_dicom_to_json(self): | |
| 2815 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
|
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
59
diff
changeset
|
2816 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
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|
2817 |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
59
diff
changeset
|
2818 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
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diff
changeset
|
2819 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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diff
changeset
|
2820 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
| 123 | 2821 # Tags for compatibility with DCMTK 3.6.0 |
| 2822 'RETIRED_OtherPatientIDs', | |
| 2823 'OtherPatientIDs', | |
| 2824 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
|
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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diff
changeset
|
2825 ])) |
| 55 | 2826 |
| 2827 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 2828 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2829 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
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diff
changeset
|
2830 ])) |
| 55 | 2831 |
|
60
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2832 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
|
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diff
changeset
|
2833 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
|
80
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|
2834 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
|
8466dbfcb22b
fix test against dcmtk 3.6.1
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changeset
|
2835 ])) |
|
60
cd3c7f70f139
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|
2836 |
|
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diff
changeset
|
2837 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
|
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test backward compatibility with Orthanc 0.9.4
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59
diff
changeset
|
2838 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
|
cd3c7f70f139
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diff
changeset
|
2839 a = json.loads(f.read()) |
|
65
09fc27e0899a
patch for testing windows builds
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parents:
64
diff
changeset
|
2840 aa = json.dumps(a).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
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diff
changeset
|
2841 tt = json.dumps(t).replace('2e+022', '2e+22') |
|
09fc27e0899a
patch for testing windows builds
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diff
changeset
|
2842 self.assertEqual(aa, tt) |
| 57 | 2843 |
| 2844 | |
| 2845 def test_batch_archive(self): | |
| 2846 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 2847 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
| 2848 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 2849 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
| 2850 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 2851 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
| 2852 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 2853 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 2854 | |
| 2855 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
| 2856 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2857 self.assertEqual(0, len(z.namelist())) | |
| 2858 | |
| 2859 # One patient | |
| 2860 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
| 2861 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2862 self.assertEqual(4, len(z.namelist())) | |
| 2863 | |
| 2864 # One patient + twice its study + one series from other patient | |
| 2865 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2866 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2867 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 2868 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
| 2869 ]) | |
| 2870 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2871 self.assertEqual(6, len(z.namelist())) | |
| 2872 | |
| 2873 # One patient + one series + one instance | |
| 2874 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
| 2875 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 2876 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
| 2877 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
| 2878 ]) | |
| 2879 z = zipfile.ZipFile(StringIO(s), "r") | |
| 2880 self.assertEqual(7, len(z.namelist())) | |
|
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2881 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2882 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2883 def test_decode_brainix_as_jpeg(self): |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2884 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2885 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2886 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2887 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2888 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2889 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2890 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2891 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2892 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2893 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2894 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2895 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2896 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2897 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2898 self.assertEqual('PNG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2899 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2900 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2901 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2902 self.assertEqual(j.size[0], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2903 self.assertEqual(j.size[1], 256) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2904 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2905 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2906 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2907 self.assertLess(a, b) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2908 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2909 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2910 self.assertEqual('JPEG', j.format) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2911 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2912 # 16bit encoding is not supported with JPEG |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2913 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2914 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2915 |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2916 # No matching content type |
|
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2917 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
|
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2918 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2919 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2920 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2921 def test_media_encodings(self): |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2922 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2923 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2924 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2925 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2926 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2927 z = zipfile.ZipFile(StringIO(tmp), "r") |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2928 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2929 self.assertEqual(4, len(z.namelist())) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2930 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2931 self.assertTrue('IMAGES/IM1' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2932 self.assertTrue('IMAGES/IM2' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2933 self.assertTrue('DICOMDIR' in z.namelist()) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2934 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2935 try: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2936 os.remove('/tmp/DICOMDIR') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2937 except: |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2938 # The file does not exist |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2939 pass |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2940 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2941 z.extract('DICOMDIR', '/tmp') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2942 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2943 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2944 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2945 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2946 stderr = subprocess.STDOUT).split('\n') |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2947 self.assertEqual(1, len(a)) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2948 self.assertEqual('', a[0]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2949 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2950 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2951 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2952 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2953 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2954 |
|
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2955 os.remove('/tmp/DICOMDIR') |
|
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2956 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2957 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2958 def test_findscu_counters(self): |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2959 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2960 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2961 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2962 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2963 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2964 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2965 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2966 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2967 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2968 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2969 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2970 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2971 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
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parents:
70
diff
changeset
|
2972 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2973 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
|
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parents:
70
diff
changeset
|
2974 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2975 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2976 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2977 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2978 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2979 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2980 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2981 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2982 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2983 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
|
48740070cbf1
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parents:
70
diff
changeset
|
2984 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2985 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2986 self.assertTrue('3 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2987 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2988 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2989 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2990 self.assertEqual(2, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2991 self.assertTrue('1 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2992 self.assertTrue('2 ' in s) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2993 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2994 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2995 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2996 self.assertEqual(1, len(s)) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2997 t = map(lambda x: x.strip(), s[0].split('\\')) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2998 self.assertTrue('PT' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2999 self.assertTrue('CT' in t) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3000 |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3001 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
|
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3002 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3003 self.assertEqual(1, len(s)) |
|
176
48cc188ffb09
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am@osimis.io
parents:
175
diff
changeset
|
3004 t = map(lambda x: x.strip('\x00'), s[0].split('\\')) |
|
71
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3005 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
|
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
3006 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
|
48740070cbf1
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parents:
70
diff
changeset
|
3007 |
|
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parents:
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diff
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|
3008 |
|
78
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3009 def test_decode_transfer_syntax(self): |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3010 def Check(t, md5): |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3011 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
|
b89af51797ff
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parents:
74
diff
changeset
|
3012 |
|
89
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3013 if t != '1.2.840.10008.1.2': # This file has no meta header |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3014 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3015 self.assertEqual(t, transferSyntax) |
|
74b7b9aed5f8
test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
87
diff
changeset
|
3016 |
|
78
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3017 if md5 == None: |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3018 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
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74
diff
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|
3019 else: |
|
b89af51797ff
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parents:
74
diff
changeset
|
3020 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
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|
3021 self.assertEqual(m, md5) |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3022 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3023 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
|
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
3024 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
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|
3025 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3026 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3027 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3028 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3029 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3030 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3031 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3032 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
|
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3033 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
|
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
3034 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
| 79 | 3035 |
| 3036 | |
| 3037 def test_raw_frame(self): | |
| 3038 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
| 3039 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3040 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3041 self.assertEqual(512 * 512 * 2, len(a)) | |
| 3042 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
| 3043 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
| 3044 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
| 3045 | |
| 3046 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
| 3047 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3048 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
| 3049 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
| 3050 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
| 3051 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3052 self.assertEqual("L", im.mode) | |
| 3053 self.assertEqual(512, im.size[0]) | |
| 3054 self.assertEqual(512, im.size[1]) | |
| 3055 | |
| 3056 # Test an image with 2 JPEG frames spread over multiple fragments | |
| 3057 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
| 3058 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
| 3059 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3060 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
| 3061 self.assertEqual(69214, len(a)) | |
| 3062 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
| 3063 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
| 3064 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
| 3065 self.assertEqual("RGB", im.mode) | |
| 3066 self.assertEqual(512, im.size[0]) | |
| 3067 self.assertEqual(512, im.size[1]) | |
| 3068 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
| 3069 self.assertEqual("RGB", im.mode) | |
| 3070 self.assertEqual(512, im.size[0]) | |
| 3071 self.assertEqual(512, im.size[1]) | |
| 81 | 3072 |
| 3073 | |
| 3074 | |
| 3075 def test_rest_movescu(self): | |
| 3076 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3077 | |
| 3078 # Upload 4 instances | |
| 3079 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
| 3080 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
| 3081 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
| 3082 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 3083 | |
| 3084 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3085 for p in DoGet(_REMOTE, '/patients'): | |
| 3086 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
| 3087 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3088 | |
| 3089 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3090 | |
| 3091 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
| 3092 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
| 3093 'Resources' : [ | |
| 3094 { | |
| 3095 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3096 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3097 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
| 3098 } | |
| 3099 ]}) | |
| 3100 | |
| 3101 # Upload series Brainix/Flair/* | |
| 3102 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3103 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3104 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3105 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
| 3106 | |
| 3107 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3108 'Resources' : [ | |
| 3109 { | |
| 3110 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3111 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
| 3112 } | |
| 3113 ]}) | |
| 3114 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3115 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3116 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
| 3117 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
| 3118 | |
| 3119 # Upload series Brainix/Epi/* | |
| 3120 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
| 3121 'Resources' : [ | |
| 3122 { | |
| 3123 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3124 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
| 3125 } | |
| 3126 ]}) | |
| 3127 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
| 3128 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
| 3129 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
| 3130 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
| 3131 | |
| 3132 # Upload study Knee/* | |
| 3133 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3134 'Resources' : [ | |
| 3135 { | |
| 3136 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3137 } | |
| 3138 ]}) | |
| 3139 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3140 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3141 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3142 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3143 | |
| 3144 # Reset | |
| 3145 for p in DoGet(_REMOTE, '/patients'): | |
| 3146 DoDelete(_REMOTE, '/patients/%s' % p) | |
| 3147 | |
| 3148 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
| 3149 | |
| 3150 | |
| 3151 # Upload all at once | |
| 3152 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
| 3153 'Resources' : [ | |
| 3154 { | |
| 3155 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 3156 }, | |
| 3157 { | |
| 3158 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
| 3159 } | |
| 3160 ]}) | |
| 3161 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
| 3162 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
| 3163 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
| 3164 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
| 3165 | |
|
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3166 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3167 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3168 def test_reconstruct_json(self): |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3169 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3170 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3171 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3172 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3173 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3174 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3175 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3176 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3177 # Cannot delete the "DICOM" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3178 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3179 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3180 # Can delete the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3181 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3182 self.assertTrue(type(r) is dict and len(r) == 0) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3183 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3184 # Only the "DICOM" attachment subsists |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3185 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3186 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3187 # Cannot manually reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3188 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3189 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3190 # Transparently reconstruct the "DICOM as JSON" attachment |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3191 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3192 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3193 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3194 |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3195 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3196 self.assertEqual(str(first), str(second)) |
|
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
3197 self.assertEqual(str(first), str(third)) |
|
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3198 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3199 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3200 def test_reconstruct_json2(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3201 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3202 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3203 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3204 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3205 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3206 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3207 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3208 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3209 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3210 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3211 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3212 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3213 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3214 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3215 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3216 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3217 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3218 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3219 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3220 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3221 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3222 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3223 |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3224 def test_private_tags(self): |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3225 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3226 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3227 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3228 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
|
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3229 |
|
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3230 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3231 def test_findscu_encoding(self): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3232 # Check out ../Database/Encodings/Generate.sh |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3233 TEST = u'Test-éüäöòДΘĝדصķћ๛ﾈİ' |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3234 ENCODINGS = { |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3235 'Arabic' : [ 'ISO_IR 127' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3236 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3237 'Cyrillic' : [ 'ISO_IR 144' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3238 'Greek' : [ 'ISO_IR 126' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3239 'Hebrew' : [ 'ISO_IR 138' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3240 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3241 'Latin1' : [ 'ISO_IR 100' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3242 'Latin2' : [ 'ISO_IR 101' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3243 'Latin3' : [ 'ISO_IR 109' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3244 'Latin4' : [ 'ISO_IR 110' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3245 'Latin5' : [ 'ISO_IR 148' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3246 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3247 'Utf8' : [ 'ISO_IR 192' ], |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3248 } |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3249 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3250 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3251 if len(ENCODINGS[name]) == 1: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3252 ENCODINGS[name].append(name.lower()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3253 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3254 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3255 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3256 for name in ENCODINGS.iterkeys(): |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3257 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3258 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3259 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3260 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3261 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3262 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3263 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3264 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3265 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3266 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3267 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3268 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3269 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3270 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3271 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3272 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3273 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3274 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3275 #for master in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3276 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3277 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3278 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3279 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3280 for name in ENCODINGS: |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3281 DropOrthanc(_REMOTE) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3282 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3283 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3284 i = CallFindScu([ '-k', '0008,0052=STUDY', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3285 '-k', 'PatientID', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3286 '-k', 'SpecificCharacterSet', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3287 '-k', 'PatientName' ]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3288 i = i.decode(ENCODINGS[master][1]) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3289 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3290 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3291 self.assertEqual(1, len(characterSet)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3292 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3293 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3294 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3295 self.assertEqual(1, len(patientId)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3296 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3297 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3298 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3299 self.assertEqual(1, len(patientName)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3300 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3301 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3302 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3303 tmp = ENCODINGS[master][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3304 expected = expected.encode(tmp, 'ignore').decode(tmp) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3305 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3306 self.assertEqual(expected, patientName[0].strip()) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3307 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3308 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3309 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3310 'Level' : 'Study', |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3311 'Query' : { }}) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3312 self.assertEqual(1, len(a)) |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3313 |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3314 tmp = ENCODINGS[name][1] |
|
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3315 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3316 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3317 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3318 def test_reconstruct(self): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3319 def CompareMainDicomTag(expected, instance, level, tag): |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3320 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3321 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3322 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3323 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3324 studies = DoGet(_REMOTE, '/studies/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3325 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3326 self.assertEqual(1, len(studies)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3327 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3328 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3329 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3330 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3331 "Replace" : { |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3332 "StudyDescription" : "hello", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3333 "SeriesDescription" : "world", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3334 "SOPClassUID" : "test", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3335 "SOPInstanceUID" : "myid", |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3336 }, |
| 119 | 3337 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
| 3338 "Force" : True | |
|
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3339 }) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3340 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3341 instances = DoGet(_REMOTE, '/instances/') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3342 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3343 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3344 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3345 self.assertEqual(2, len(instances)) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3346 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3347 b = instances[0] if instances[1] == a else instances[1] |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3348 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3349 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3350 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3351 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3352 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3353 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3354 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3355 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3356 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3357 |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3358 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3359 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
|
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3360 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
| 102 | 3361 |
| 104 | 3362 def test_httpClient_lua(self): |
| 3363 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
| 102 | 3364 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
| 3365 | |
| 3366 self.assertIn('OK', result) | |
|
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3367 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3368 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3369 def test_bitbucket_issue_44(self): |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3370 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3371 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3372 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3373 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3374 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3375 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3376 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3377 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3378 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3379 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3380 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3381 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3382 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3383 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3384 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3385 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3386 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3387 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3388 self.assertEqual(2010, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3389 self.assertEqual(2446, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3390 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3391 # This is the chest image, with MONOCHROME1. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3392 # white (255), should be rendered as black (0) => invert |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3393 if i == monochrome1_jpeg: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3394 # Add some tolerance because of JPEG destructive compression |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3395 self.assertGreater(10, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3396 else: |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3397 self.assertEqual(0, im.getpixel((0,0))) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3398 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3399 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3400 self.assertEqual("L", im.mode) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3401 self.assertEqual(1572, im.size[0]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3402 self.assertEqual(2010, im.size[1]) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3403 |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3404 # This is the key image, with MONOCHROME2. Raw background is |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3405 # white (255), should be rendered as white (255) |
|
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3406 self.assertEqual(255, im.getpixel((0,0))) |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3407 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3408 |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3409 def test_bitbucket_issue_42(self): |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3410 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
| 123 | 3411 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3412 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3413 modified = DoPost(_REMOTE, |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3414 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
| 119 | 3415 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3416 'application/json') |
|
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3417 self.assertTrue('PatientID' in modified) |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3418 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3419 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3420 def test_rest_find_limit(self): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3421 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3422 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
|
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3423 |
|
113
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3424 # Upload 6 instances |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3425 brainix = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3426 knee = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3427 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3428 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3429 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3430 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3431 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3432 # Check using BRAINIX |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3433 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3434 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3435 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3436 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3437 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3438 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3439 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3440 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3441 self.assertEqual(4, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3442 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3443 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3444 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3445 'Since' : 2, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3446 'Limit' : 4 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3447 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3448 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3449 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3450 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3451 'Limit' : 3 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3452 self.assertEqual(3, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3453 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3454 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3455 for i in range(4): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3456 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3457 'Query' : { 'PatientName' : 'B*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3458 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3459 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3460 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3461 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3462 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3463 # Check whether the two sets are equal through symmetric difference |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3464 self.assertEqual(0, len(set(b) ^ set(brainix))) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3465 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3466 # Check using KNEE |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3467 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3468 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3469 'Limit' : 10 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3470 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3471 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3472 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3473 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3474 'Limit' : 2 }) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3475 self.assertEqual(2, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3476 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3477 b = [] |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3478 for i in range(2): |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3479 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3480 'Query' : { 'PatientName' : 'K*' }, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3481 'Limit' : 1, |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3482 'Since' : i }) |
|
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3483 self.assertEqual(1, len(a)) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3484 b.append(a[0]) |
|
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3485 |
|
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3486 self.assertEqual(0, len(set(b) ^ set(knee))) |
|
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3487 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3488 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3489 def test_bitbucket_issue_46(self): |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3490 # "PHI remaining after anonymization" |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3491 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3492 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3493 def GetAnonymizedTags(study, version): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3494 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3495 { 'DicomVersion' : version }, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3496 'application/json') ['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3497 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3498 self.assertEqual(1, len(a)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3499 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3500 instance = a[0]['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3501 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3502 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3503 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3504 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3505 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3506 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3507 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
|
45ebfab035b7
test_bitbucket_issue_46
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parents:
113
diff
changeset
|
3508 # (Patient's Mother's Birth Name) tags |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3509 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3510 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3511 'application/json')['ID'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3512 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3513 # Use Table E.1-1 from PS 3.15-2008 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3514 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3515 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3516 self.assertTrue('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3517 self.assertTrue('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3518 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3519 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3520 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3521 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3522 self.assertFalse('0032,1033' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3523 self.assertFalse('0010,1060' in tags) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3524 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3525 t = {} |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3526 for (key, value) in tags.iteritems(): |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3527 t[value['Name']] = value['Value'] |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3528 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3529 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3530 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3531 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3532 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3533 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3534 |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3535 with tempfile.NamedTemporaryFile(delete = True) as f: |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3536 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3537 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3538 f.flush() |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3539 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
|
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
3540 stderr = subprocess.STDOUT).split('\n') |
|
118
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3541 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3542 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3543 def test_bitbucket_issue_55(self): |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3544 def Run(modify, query): |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3545 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3546 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3547 operation = 'modify' if modify else 'anonymize' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3548 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3549 self.assertRaises(Exception, lambda: DoPost( |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3550 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3551 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3552 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3553 query["Force"] = True |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3554 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3555 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3556 DoDelete(_REMOTE, a) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3557 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3558 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3559 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3560 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3561 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3562 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3563 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3564 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3565 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3566 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3567 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3568 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3569 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3570 |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3571 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3572 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3573 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
|
a954c535fef6
test_bitbucket_issue_55
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
117
diff
changeset
|
3574 |
|
120
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3575 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3576 def test_bitbucket_issue_56(self): |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3577 # Case-insensitive matching over accents. This test assumes |
|
fce08afe6b2d
test_bitbucket_issue_56
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119
diff
changeset
|
3578 # that the "CaseSensitivePN" configuration option of Orthanc |
|
fce08afe6b2d
test_bitbucket_issue_56
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diff
changeset
|
3579 # is set to "false" (default value). |
|
fce08afe6b2d
test_bitbucket_issue_56
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parents:
119
diff
changeset
|
3580 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3581 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3582 def Check(name, expected, expectedSensitive): |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3583 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3584 '-k', '0008,0052=PATIENT', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3585 '-k', 'PatientName=%s' % name ]) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3586 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3587 self.assertEqual(expected, len(patientNames)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3588 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3589 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3590 'CaseSensitive' : False, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3591 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3592 self.assertEqual(expected, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3593 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3594 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3595 'CaseSensitive' : True, |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3596 'Query' : { 'PatientName' : name }}) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3597 self.assertEqual(expectedSensitive, len(a)) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3598 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3599 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3600 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3601 # WildcardConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3602 Check('TeSt*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3603 Check('TeSt-a*', 0, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3604 Check('TeSt-É*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3605 Check('TeSt-é*', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3606 Check('Test-é*', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3607 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3608 # ListConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3609 Check('Test-éüäöò\\nope', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3610 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3611 |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3612 # ValueConstraint |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3613 Check('Test-éüäöò', 1, 1) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3614 Check('Test-ÉÜÄÖÒ', 1, 0) |
|
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3615 |
| 125 | 3616 |
| 3617 def test_gbk_alias(self): | |
| 3618 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
| 3619 # This test fails on Orthanc <= 1.3.0 | |
| 3620 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
| 3621 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3622 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
| 3623 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
| 126 | 3624 |
| 3625 | |
| 3626 def test_long_tag(self): | |
| 3627 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
| 3628 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
| 3629 | |
| 3630 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
| 3631 self.assertTrue('0018,1020' in tags) | |
| 3632 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3633 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
| 3634 self.assertEqual(None, tags['0018,1020']['Value']) | |
| 3635 | |
| 3636 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
| 3637 self.assertTrue('0018,1020' in tags) | |
| 3638 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
| 3639 self.assertEqual('String', tags['0018,1020']['Type']) | |
| 3640 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3641 | |
| 3642 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
| 3643 self.assertTrue('SoftwareVersions' in tags) | |
| 3644 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3645 self.assertTrue('HeartRate' in tags) | |
| 3646 self.assertEqual(474, int(tags['HeartRate'])) | |
| 3647 | |
| 3648 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
| 3649 self.assertTrue('SoftwareVersions' in tags) | |
| 3650 self.assertEqual(None, tags['SoftwareVersions']) | |
| 3651 | |
| 3652 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
| 3653 self.assertTrue('SoftwareVersions' in tags) | |
| 3654 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3655 | |
| 3656 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
| 3657 self.assertTrue('SoftwareVersions' in tags) | |
| 3658 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
| 3659 | |
| 3660 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
| 3661 self.assertEqual(1, len(tags)) | |
| 3662 self.assertTrue(i in tags.keys()) | |
| 3663 self.assertTrue('0018,1020' in tags[i]) | |
| 3664 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
| 3665 | |
| 3666 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
| 3667 self.assertEqual(1, len(tags)) | |
| 3668 self.assertTrue(i in tags.keys()) | |
| 3669 self.assertTrue('0018,1020' in tags[i]) | |
| 3670 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
| 3671 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
| 3672 | |
|
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3673 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3674 def test_extended_media(self): |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3675 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3676 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3677 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3678 self.assertEqual(2, len(z.namelist())) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3679 self.assertTrue('IMAGES/IM0' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3680 self.assertTrue('DICOMDIR' in z.namelist()) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3681 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3682 try: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3683 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3684 except: |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3685 # The file does not exist |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3686 pass |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3687 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3688 z.extract('DICOMDIR', '/tmp') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3689 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3690 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3691 self.assertEqual(5, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3692 self.assertTrue(a[0].startswith('Warning')) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3693 self.assertEqual('BasicDirectory', a[1]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3694 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3695 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3696 self.assertEqual('', a[4]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3697 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3698 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3699 stderr = subprocess.STDOUT).split('\n') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3700 self.assertEqual(1, len(a)) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3701 self.assertEqual('', a[0]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3702 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3703 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3704 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3705 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3706 # Check the presence of the series description (extended tag) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3707 self.assertTrue(re.search('T1W_aTSE', a) != None) |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3708 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3709 os.remove('/tmp/DICOMDIR') |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3710 |
|
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3711 |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3712 def test_anonymize_relationships_1(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3713 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3714 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3715 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3716 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3717 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3718 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3719 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3720 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3721 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3722 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3723 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3724 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3725 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3726 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3727 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3728 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3729 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3730 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3731 SEQUENCE = '/instances/%s/content/ReferencedImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3732 SOP = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3733 CLASS = '/instances/%s/content/ReferencedImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3734 FRAME = '/instances/%s/content/FrameOfReferenceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3735 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3736 self.assertEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3737 DoGet(_REMOTE, FRAME % a2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3738 self.assertEqual(DoGet(_REMOTE, FRAME % b1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3739 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3740 self.assertNotEqual(DoGet(_REMOTE, FRAME % a1), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3741 DoGet(_REMOTE, FRAME % b1)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3742 self.assertNotEqual(DoGet(_REMOTE, FRAME % a2), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3743 DoGet(_REMOTE, FRAME % b2)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3744 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3745 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3746 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3747 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3748 self.assertEqual(3, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3749 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3750 for i in range(3): |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3751 self.assertEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3752 DoGet(_REMOTE, SOP % (a2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3753 self.assertEqual(DoGet(_REMOTE, SOP % (b1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3754 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3755 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3756 DoGet(_REMOTE, SOP % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3757 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3758 DoGet(_REMOTE, SOP % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3759 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3760 DoGet(_REMOTE, CLASS % (b1, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3761 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, i)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3762 DoGet(_REMOTE, CLASS % (b2, i))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3763 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3764 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3765 def test_anonymize_relationships_2(self): |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3766 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3767 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0002.dcm') |
|
132
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3768 study = '6c65289b-db2fcb71-7eaf73f4-8e12470c-a4d6d7cf' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3769 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3770 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3771 '{}', |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3772 'application/json')['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3773 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3774 a = DoGet(_REMOTE, '/studies/%s/instances' % study) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3775 self.assertEqual(2, len(a)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3776 a1 = a[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3777 a2 = a[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3778 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3779 b = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3780 self.assertEqual(2, len(b)) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3781 b1 = b[0]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3782 b2 = b[1]['ID'] |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3783 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3784 SEQUENCE = '/instances/%s/content/SourceImageSequence' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3785 SOP = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPInstanceUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3786 CLASS = '/instances/%s/content/SourceImageSequence/%d/ReferencedSOPClassUID' |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3787 |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3788 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3789 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % a2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3790 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b1))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3791 self.assertEqual(1, len(DoGet(_REMOTE, SEQUENCE % b2))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3792 self.assertEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3793 DoGet(_REMOTE, SOP % (a2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3794 self.assertEqual(DoGet(_REMOTE, SOP % (b1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3795 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3796 self.assertNotEqual(DoGet(_REMOTE, SOP % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3797 DoGet(_REMOTE, SOP % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3798 self.assertNotEqual(DoGet(_REMOTE, SOP % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3799 DoGet(_REMOTE, SOP % (b2, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3800 self.assertEqual(DoGet(_REMOTE, CLASS % (a1, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3801 DoGet(_REMOTE, CLASS % (b1, 0))) |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3802 self.assertEqual(DoGet(_REMOTE, CLASS % (a2, 0)), |
|
149144d854bb
Orthanc.test_anonymize_relationships_1/2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
130
diff
changeset
|
3803 DoGet(_REMOTE, CLASS % (b2, 0))) |
|
133
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3804 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3805 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3806 def test_anonymize_relationships_3(self): |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3807 sr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM0')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3808 mr1 = UploadInstance(_REMOTE, 'HierarchicalAnonymization/StructuredReports/IM631')['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3809 study = 'ef351eb2-c1147229-062736b8-35a151e3-e32d526b' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3810 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3811 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3812 { "Keep" : [ "ContentSequence" ] }) ['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3813 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3814 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3815 self.assertEqual(2, len(a)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3816 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3817 if DoGet(_REMOTE, '/instances/%s/content/Modality' % a[0]['ID']) == 'SR': |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3818 sr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3819 mr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3820 else: |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3821 sr2 = a[1]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3822 mr2 = a[0]['ID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3823 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3824 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % sr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3825 DoGet(_REMOTE, '/instances/%s/content/Modality' % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3826 self.assertEqual(DoGet(_REMOTE, '/instances/%s/content/Modality' % mr1), |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3827 DoGet(_REMOTE, '/instances/%s/content/Modality' % mr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3828 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3829 mrUid1 = DoGet(_REMOTE, '/instances/%s' % mr1)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3830 mrUid2 = DoGet(_REMOTE, '/instances/%s' % mr2)['MainDicomTags']['SOPInstanceUID'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3831 mrSeries1 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3832 mrSeries2 = DoGet(_REMOTE, '/instances/%s/content/SeriesInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3833 mrStudy1 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr1).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3834 mrStudy2 = DoGet(_REMOTE, '/instances/%s/content/StudyInstanceUID' % mr2).strip('\x00') |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3835 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3836 PATH1 = '/instances/%s/content/CurrentRequestedProcedureEvidenceSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3837 PATH2 = PATH1 + '/0/ReferencedSeriesSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3838 PATH3 = PATH2 + '/0/ReferencedSOPSequence' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3839 PATH4 = PATH3 + '/0/ReferencedSOPInstanceUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3840 PATH5 = PATH3 + '/0/ReferencedSOPClassUID' |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3841 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3842 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3843 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3844 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr1))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3845 self.assertEqual(DoGet(_REMOTE, PATH4 % sr1), mrUid1) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3846 self.assertEqual(mrSeries1, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3847 self.assertEqual(mrStudy1, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr1).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3848 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3849 self.assertEqual(1, len(DoGet(_REMOTE, PATH1 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3850 self.assertEqual(1, len(DoGet(_REMOTE, PATH2 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3851 self.assertEqual(1, len(DoGet(_REMOTE, PATH3 % sr2))) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3852 self.assertEqual(DoGet(_REMOTE, PATH5 % sr1), DoGet(_REMOTE, PATH5 % sr2)) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3853 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3854 self.assertEqual(mrUid2, DoGet(_REMOTE, PATH4 % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3855 self.assertEqual(mrSeries2, DoGet(_REMOTE, (PATH2 + '/0/SeriesInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3856 self.assertEqual(mrStudy2, DoGet(_REMOTE, (PATH1 + '/0/StudyInstanceUID') % sr2).strip('\x00')) |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3857 |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3858 content1 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr1) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3859 content2 = DoGet(_REMOTE, '/instances/%s/tags?simplify' % sr2) ['ContentSequence'] |
|
f0d4c4707e64
test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
132
diff
changeset
|
3860 self.assertEqual(str(content1), str(content2)) |
|
141
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3861 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3862 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3863 def test_bitbucket_issue_94(self): |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3864 # "a simple instance modification should not modify FrameOfReferenceUID + ..." |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3865 # https://bitbucket.org/sjodogne/orthanc/issues/94 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3866 i = UploadInstance(_REMOTE, 'Issue94.dcm')['ID'] |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3867 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3868 source = DoGet(_REMOTE, '/instances/%s/attachments/dicom/data' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3869 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3870 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3871 { "Replace" : {"PatientID" : "toto"}, "Force": True}) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3872 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3873 anonymized = DoPost(_REMOTE, '/instances/%s/anonymize' % i) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3874 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3875 a = ExtractDicomTags(source, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3876 self.assertEqual(1, len(a)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3877 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3878 b = ExtractDicomTags(modified, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3879 self.assertEqual(1, len(b)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3880 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3881 c = ExtractDicomTags(anonymized, [ 'FrameOfReferenceUID' ]) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3882 self.assertEqual(1, len(c)) |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3883 |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3884 self.assertEqual(a, b) # Modified DICOM |
|
5de178abe4d8
test_bitbucket_issue_94
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
138
diff
changeset
|
3885 self.assertNotEqual(a, c) # Anonymized DICOM |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3886 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3887 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3888 def test_metadata_origin(self): |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3889 # Upload using the REST API |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3890 i = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3891 self.assertEqual('RestApi', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3892 self.assertEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3893 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3894 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3895 self.assertEqual('alice', DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3896 |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3897 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3898 self.assertEqual('RestApi', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3899 self.assertEqual('', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3900 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3901 self.assertFalse('CalledAET' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3902 self.assertEqual('alice', m['HttpUsername']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3903 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3904 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3905 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3906 self.assertEqual('1', m['IndexInSeries']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3907 self.assertTrue('ReceptionDate' in m) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3908 |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3909 DoDelete(_REMOTE, '/instances/%s' % i) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3910 |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3911 # Upload using the DICOM protocol |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3912 subprocess.check_call([ FindExecutable('storescu'), |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3913 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3914 GetDatabasePath('Knee/T1/IM-0001-0001.dcm'), |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3915 '-xw' ]) # Propose JPEG2000 |
|
143
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3916 self.assertEqual('DicomProtocol', DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3917 self.assertEqual('STORESCU', DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3918 self.assertNotEqual('', DoGet(_REMOTE, '/instances/%s/metadata/RemoteIP' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3919 self.assertEqual('ANY-SCP', DoGet(_REMOTE, '/instances/%s/metadata/CalledAET' % i)) |
|
28d50ffac07d
test_metadata_origin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
142
diff
changeset
|
3920 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/metadata/HttpUsername' % i)) |
|
144
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3921 |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3922 m = DoGet(_REMOTE, '/instances/%s/metadata?expand' % i) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3923 self.assertEqual('DicomProtocol', m['Origin']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3924 self.assertEqual('STORESCU', m['RemoteAET']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3925 self.assertNotEqual('', m['RemoteIP']) |
|
7809fdf8056f
testing metadata?expand
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
143
diff
changeset
|
3926 self.assertEqual('ANY-SCP', m['CalledAET']) |
|
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3927 self.assertFalse('HttpUsername' in m) |
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3928 |
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|
3929 self.assertEqual('1.2.840.10008.1.2.4.91', m['TransferSyntax']) |
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|
3930 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', m['SopClassUid']) |
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|
3931 self.assertEqual('1', m['IndexInSeries']) |
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|
3932 self.assertTrue('ReceptionDate' in m) |
| 147 | 3933 |
| 3934 | |
| 3935 def test_lua_deadlock(self): | |
| 3936 # Rana Asim Wajid (2018-07-14): "It does seem that the issue | |
| 3937 # is with the lua script I'm using for conversion of images to | |
| 3938 # JPEG2000. When the script is used with 1.4.0 the first | |
| 3939 # instance appears to be stored and then everything just | |
| 3940 # halts, ie Orthanc wont respond to anything after that." | |
| 3941 # https://groups.google.com/d/msg/orthanc-users/Rc-Beb42xc8/JUgdzrmCAgAJ | |
| 174 | 3942 InstallLuaScriptFromPath(_REMOTE, 'Lua/Jpeg2000Conversion.lua') |
| 147 | 3943 |
| 3944 subprocess.check_call([ FindExecutable('storescu'), | |
| 3945 _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
| 3946 GetDatabasePath('Brainix/Flair/IM-0001-0001.dcm'), | |
| 3947 GetDatabasePath('Brainix/Flair/IM-0001-0002.dcm'), | |
| 3948 ]) | |
| 3949 | |
| 3950 instances = DoGet(_REMOTE, '/instances') | |
| 3951 self.assertEqual(2, len(instances)) | |
| 3952 | |
| 3953 t1 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[0]) | |
| 3954 t2 = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % instances[1]) | |
| 175 | 3955 self.assertEqual('1.2.840.10008.1.2.4.90', t1) # this will fail if libgdcm-tools is not installed |
| 147 | 3956 self.assertEqual(t1, t2); |
|
154
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|
3957 |
|
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diff
changeset
|
3958 |
|
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|
3959 def test_find_group_length(self): |
|
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|
3960 # Orthanc <= 1.4.1 fails to answer C-FIND queries that contain |
|
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|
3961 # one of the Generic Group Length tags (*, 0x0000) |
|
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|
3962 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
|
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|
3963 result = CallFindScu([ '-k', '0008,0052=STUDY', '-k', '0008,0000=80' ]) |
|
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3964 self.assertFalse('UnableToProcess' in result) |
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|
3965 self.assertFalse('E:' in result) |
|
179
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3966 |
|
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|
3967 |
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|
3968 def test_split(self): |
|
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3969 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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|
3970 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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3971 study = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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|
3972 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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|
3973 t2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' |
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changeset
|
3974 |
|
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changeset
|
3975 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) |
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|
3976 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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changeset
|
3977 |
|
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|
3978 info = DoGet(_REMOTE, '/studies/%s' % study) |
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changeset
|
3979 self.assertTrue('ReferringPhysicianName' in info['MainDicomTags']) |
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changeset
|
3980 |
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|
3981 job = MonitorJob2(_REMOTE, lambda: DoPost |
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|
3982 (_REMOTE, '/studies/%s/split' % study, { |
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diff
changeset
|
3983 'Series' : [ t2 ], |
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|
3984 'Replace' : { 'PatientName' : 'Hello' }, |
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|
3985 'Remove' : [ 'ReferringPhysicianName' ], |
| 181 | 3986 'KeepSource' : False, |
| 3987 'Asynchronous' : True | |
|
179
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|
3988 })) |
|
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changeset
|
3989 |
|
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changeset
|
3990 self.assertNotEqual(None, job) |
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changeset
|
3991 |
|
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changeset
|
3992 studies = set(DoGet(_REMOTE, '/studies')) |
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changeset
|
3993 self.assertEqual(2, len(studies)) |
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changeset
|
3994 |
|
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diff
changeset
|
3995 series = set(DoGet(_REMOTE, '/series')) |
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diff
changeset
|
3996 self.assertEqual(2, len(series)) |
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changeset
|
3997 self.assertTrue(t1 in series) |
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diff
changeset
|
3998 |
|
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diff
changeset
|
3999 study2 = DoGet(_REMOTE, '/jobs/%s' % job)['Content']['TargetStudy'] |
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changeset
|
4000 self.assertTrue(study in studies) |
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changeset
|
4001 self.assertTrue(study2 in studies) |
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changeset
|
4002 |
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diff
changeset
|
4003 info = DoGet(_REMOTE, '/studies/%s' % study2) |
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changeset
|
4004 self.assertTrue('Hello', info['PatientMainDicomTags']['PatientName']) |
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changeset
|
4005 self.assertFalse('ReferringPhysicianName' in info['MainDicomTags']) |
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changeset
|
4006 |
|
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diff
changeset
|
4007 |
|
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changeset
|
4008 def test_merge(self): |
|
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diff
changeset
|
4009 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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diff
changeset
|
4010 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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diff
changeset
|
4011 knee = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' |
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diff
changeset
|
4012 t1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' |
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diff
changeset
|
4013 brainix = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' |
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diff
changeset
|
4014 flair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' |
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diff
changeset
|
4015 |
|
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diff
changeset
|
4016 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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changeset
|
4017 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) |
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changeset
|
4018 |
|
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diff
changeset
|
4019 job = MonitorJob2(_REMOTE, lambda: DoPost |
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diff
changeset
|
4020 (_REMOTE, '/studies/%s/merge' % knee, { |
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changeset
|
4021 'Resources' : [ brainix ], |
| 181 | 4022 'KeepSource' : True, |
| 4023 'Synchronous' : False | |
|
179
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changeset
|
4024 })) |
|
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changeset
|
4025 |
|
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changeset
|
4026 self.assertNotEqual(None, job) |
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changeset
|
4027 |
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changeset
|
4028 studies = set(DoGet(_REMOTE, '/studies')) |
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changeset
|
4029 self.assertEqual(2, len(studies)) |
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|
4030 self.assertTrue(knee in studies) |
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|
4031 self.assertTrue(brainix in studies) |
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changeset
|
4032 |
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changeset
|
4033 series = set(DoGet(_REMOTE, '/studies/%s' % knee)['Series']) |
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|
4034 self.assertTrue(t1 in series) |
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|
4035 series.remove(t1) |
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changeset
|
4036 self.assertEqual(1, len(series)) |
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changeset
|
4037 |
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changeset
|
4038 instances = DoGet(_REMOTE, '/series/%s' % list(series)[0])['Instances'] |
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|
4039 self.assertEqual(1, len(instances)) |
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|
4040 merged = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4041 |
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diff
changeset
|
4042 instances = DoGet(_REMOTE, '/series/%s' % t1)['Instances'] |
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|
4043 self.assertEqual(1, len(instances)) |
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|
4044 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4045 |
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changeset
|
4046 instances = DoGet(_REMOTE, '/series/%s' % flair)['Instances'] |
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|
4047 self.assertEqual(1, len(instances)) |
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|
4048 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % instances[0]) |
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changeset
|
4049 |
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|
4050 tags = DoGet(_REMOTE, '/studies/%s' % knee) |
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changeset
|
4051 |
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|
4052 for key in tags['PatientMainDicomTags']: |
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|
4053 self.assertEqual(a[key], merged[key]) |
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|
4054 if (key in b and key != 'PatientSex'): |
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4055 self.assertNotEqual(a[key], b[key]) |
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4056 |
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4057 for key in tags['MainDicomTags']: |
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4058 # Not in the patient/study module |
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4059 if (not key in [ 'InstitutionName', |
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4060 'RequestingPhysician', |
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4061 'RequestedProcedureDescription', ]): |
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4062 self.assertEqual(a[key], merged[key]) |
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4063 if (key in b): |
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4064 self.assertNotEqual(a[key], b[key]) |
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4065 |
| 187 | 4066 |
| 4067 def test_async_archive(self): | |
| 4068 # Testing the asynchronous generation of archives/medias (new | |
| 4069 # in Orthanc 1.4.3) | |
| 4070 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
| 4071 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
| 4072 | |
| 4073 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
| 4074 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
| 4075 | |
| 4076 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4077 (_REMOTE, '/studies/%s/archive' % kneeT1, { | |
| 4078 'Synchronous' : False | |
| 4079 })) | |
| 4080 | |
| 4081 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4082 self.assertEqual(1, len(z.namelist())) | |
| 4083 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4084 | |
| 4085 job2 = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4086 (_REMOTE, '/studies/%s/media' % kneeT1, { | |
| 4087 'Synchronous' : False | |
| 4088 })) | |
| 4089 | |
| 4090 # The archive from the first job has been replaced by the | |
| 4091 # archive from second job (as MediaArchiveSize == 1) | |
| 4092 self.assertRaises(Exception, lambda: GetArchive(_REMOTE, '/jobs/%s/archive' % job)) | |
| 4093 | |
| 4094 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job2) | |
| 4095 self.assertEqual(2, len(z.namelist())) | |
| 4096 self.assertTrue('DICOMDIR' in z.namelist()) | |
| 4097 | |
| 4098 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4099 (_REMOTE, '/tools/create-archive', { | |
| 4100 'Synchronous' : False, | |
| 4101 'Resources' : [ kneeT1, kneeT2 ], | |
| 4102 })) | |
| 4103 | |
| 4104 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4105 self.assertEqual(2, len(z.namelist())) | |
| 4106 self.assertFalse('DICOMDIR' in z.namelist()) | |
| 4107 | |
| 4108 job = MonitorJob2(_REMOTE, lambda: DoPost | |
| 4109 (_REMOTE, '/tools/create-media', { | |
| 4110 'Synchronous' : False, | |
| 4111 'Resources' : [ kneeT1, kneeT2 ], | |
| 4112 })) | |
| 4113 | |
| 4114 z = GetArchive(_REMOTE, '/jobs/%s/archive' % job) | |
| 4115 self.assertEqual(3, len(z.namelist())) | |
| 4116 self.assertTrue('DICOMDIR' in z.namelist()) | |
|
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4117 |
| 187 | 4118 |
|
188
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4119 def test_queries_hierarchy(self): |
|
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4120 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
|
189
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4121 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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4122 |
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4123 tags = { |
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4124 'NumberOfPatientRelatedInstances' : '', |
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4125 'NumberOfPatientRelatedSeries' : '', |
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4126 'NumberOfPatientRelatedStudies' : '', |
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4127 'NumberOfStudyRelatedInstances' : '', |
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4128 'NumberOfStudyRelatedSeries' : '', |
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4129 'NumberOfSeriesRelatedInstances' : '', |
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4130 } |
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4131 |
|
189
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4132 tags2 = copy.copy(tags) |
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4133 tags2['PatientID'] = '887' # Only consider the "Knee" patient |
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4134 |
|
188
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4135 patient = DoPost(_REMOTE, '/modalities/self/query', { |
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4136 'Level' : 'Patient', |
|
189
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4137 'Query' : tags2 |
|
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4138 }) ['ID'] |
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4139 |
|
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|
4140 study = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4141 'Level' : 'Study', |
|
189
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|
4142 'Query' : tags2 |
|
188
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4143 }) ['ID'] |
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4144 |
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4145 series = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4146 'Level' : 'Series', |
|
189
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|
4147 'Query' : tags2 |
|
188
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|
4148 }) ['ID'] |
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|
4149 |
|
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|
4150 instance = DoPost(_REMOTE, '/modalities/self/query', { |
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|
4151 'Level' : 'Instance', |
|
189
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|
4152 'Query' : tags2 |
|
188
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4153 }) ['ID'] |
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4154 |
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4155 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % patient) |
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4156 self.assertEqual(1, len(p)) |
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4157 self.assertEqual('887', p[0]['PatientID']) |
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4158 self.assertEqual('1', p[0]['NumberOfPatientRelatedInstances']) |
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|
4159 self.assertEqual('1', p[0]['NumberOfPatientRelatedSeries']) |
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4160 self.assertEqual('1', p[0]['NumberOfPatientRelatedStudies']) |
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|
4161 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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|
4162 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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|
4163 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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|
4164 |
|
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|
4165 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study) |
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|
4166 self.assertEqual(1, len(p)) |
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|
4167 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', p[0]['StudyInstanceUID']) |
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4168 self.assertEqual('1', p[0]['NumberOfStudyRelatedInstances']) |
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|
4169 self.assertEqual('1', p[0]['NumberOfStudyRelatedSeries']) |
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|
4170 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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|
4171 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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|
4172 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4173 self.assertFalse('NumberOfSeriesRelatedInstances' in p[0]) |
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4174 |
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|
4175 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series) |
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4176 self.assertEqual(1, len(p)) |
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4177 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908564160709', p[0]['SeriesInstanceUID']) |
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|
4178 self.assertEqual('1', p[0]['NumberOfSeriesRelatedInstances']) |
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|
4179 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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|
4180 self.assertFalse('NumberOfPatientRelatedSeries' in p[0]) |
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4181 self.assertFalse('NumberOfPatientRelatedInstances' in p[0]) |
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4182 self.assertFalse('NumberOfStudyRelatedInstances' in p[0]) |
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|
4183 self.assertFalse('NumberOfStudyRelatedSeries' in p[0]) |
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4184 |
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|
4185 p = DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance) |
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|
4186 self.assertEqual(1, len(p)) |
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4187 self.assertEqual('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', p[0]['SOPInstanceUID']) |
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4188 |
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4189 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-studies' % patient, |
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4190 { 'Query' : tags }) ['ID'] |
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4191 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
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4192 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % study)) |
|
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4193 |
|
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4194 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % patient, |
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4195 { 'Query' : tags }) ['ID'] |
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4196 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
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diff
changeset
|
4197 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4198 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4199 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % patient, |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4200 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4201 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4202 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4203 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4204 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-series' % study, |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4205 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4206 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4207 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % series)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4208 |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4209 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % study, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4210 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4211 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4212 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4213 |
|
7d585263808b
new test: test_queries_hierarchy
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187
diff
changeset
|
4214 j = DoPost(_REMOTE, '/queries/%s/answers/0/query-instances' % series, |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4215 { 'Query' : tags }) ['ID'] |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4216 self.assertEqual(DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % j), |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
187
diff
changeset
|
4217 DoGet(_REMOTE, '/queries/%s/answers?expand&simplify' % instance)) |
|
7d585263808b
new test: test_queries_hierarchy
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parents:
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diff
changeset
|
4218 |
|
7d585263808b
new test: test_queries_hierarchy
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diff
changeset
|
4219 |
|
189
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4220 def test_dicom_disk_size(self): |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
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188
diff
changeset
|
4221 dicomSize = 0 |
|
11719f19bd62
test_dicom_disk_size
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188
diff
changeset
|
4222 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4223 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
|
11719f19bd62
test_dicom_disk_size
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parents:
188
diff
changeset
|
4224 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4225 for i in range(2): |
|
11719f19bd62
test_dicom_disk_size
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parents:
188
diff
changeset
|
4226 p = 'Knee/T%d/IM-0001-0001.dcm' % (i + 1) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4227 UploadInstance(_REMOTE, p) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4228 dicomSize += os.path.getsize(GetDatabasePath(p)) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4229 |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4230 s = DoGet(_REMOTE, '/patients/ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17/statistics') # Consider Knee patient |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4231 self.assertEqual(2, s['CountInstances']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4232 self.assertEqual(2, s['CountSeries']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4233 self.assertEqual(1, s['CountStudies']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4234 self.assertEqual(dicomSize, int(s['DicomDiskSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4235 self.assertEqual(dicomSize, int(s['DicomUncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4236 self.assertLess(dicomSize, int(s['UncompressedSize'])) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4237 self.assertEqual(s['UncompressedSize'], s['DiskSize']) |
|
11719f19bd62
test_dicom_disk_size
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
188
diff
changeset
|
4238 |
|
202
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4239 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4240 def test_changes_2(self): |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4241 # More consistent behavior since Orthanc 1.5.2 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4242 # https://groups.google.com/d/msg/orthanc-users/QhzB6vxYeZ0/YxabgqpfBAAJ |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4243 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4244 # Make sure that this is not the first change |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4245 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4246 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4247 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4248 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4249 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4250 # No more instance, but there were previous changes |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4251 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4252 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4253 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4254 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4255 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4256 seq = c['Last'] |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4257 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4258 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4259 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4260 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4261 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4262 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4263 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4264 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4265 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4266 self.assertEqual(seq, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4267 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4268 # Add one instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4269 UploadInstance(_REMOTE, 'DummyCT.dcm') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4270 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4271 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4272 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4273 self.assertEqual(4, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4274 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4275 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4276 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4277 c = DoGet(_REMOTE, '/changes?last') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4278 self.assertEqual(1, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4279 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4280 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4281 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
diff
changeset
|
4282 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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195
diff
changeset
|
4283 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4284 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4285 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4286 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4287 # Remove the uploaded instance |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4288 DoDelete(_REMOTE, '/instances/%s' % a) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4289 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4290 |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4291 c = DoGet(_REMOTE, '/changes') |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
4292 self.assertEqual(0, len(c['Changes'])) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4293 self.assertTrue(c['Done']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4294 self.assertEqual(seq + 4, c['Last']) |
|
f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
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diff
changeset
|
4295 |
|
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test_changes_2 and test_bitbucket_issue_124
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4296 c = DoGet(_REMOTE, '/changes?last') |
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test_changes_2 and test_bitbucket_issue_124
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4297 self.assertEqual(0, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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4298 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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4299 self.assertEqual(seq + 4, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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changeset
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4300 |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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4301 c = DoGet(_REMOTE, '/changes?since=%d' % (seq + 1000)) |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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4302 self.assertEqual(0, len(c['Changes'])) |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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changeset
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4303 self.assertTrue(c['Done']) |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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4304 self.assertEqual(seq + 4, c['Last']) |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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changeset
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4305 |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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changeset
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4306 |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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changeset
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4307 def test_bitbucket_issue_124(self): |
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f26f9ae9c599
test_changes_2 and test_bitbucket_issue_124
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
195
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changeset
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4308 a = UploadInstance(_REMOTE, 'Issue124.dcm')['ID'] |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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changeset
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4309 |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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4310 z = GetArchive(_REMOTE, '/patients/%s/media' % a) |
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test_changes_2 and test_bitbucket_issue_124
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parents:
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4311 self.assertEqual(2, len(z.namelist())) |