Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 127:1eea4d3a1ba9 Orthanc-1.3.1
test_extended_media
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sun, 08 Oct 2017 11:45:43 +0200 |
parents | 6ead76f08d9c |
children | a9fdfcb696e6 |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
100
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8 # Copyright (C) 2017 Osimis, Belgium |
3 | 9 # |
10 # This program is free software: you can redistribute it and/or | |
11 # modify it under the terms of the GNU General Public License as | |
12 # published by the Free Software Foundation, either version 3 of the | |
13 # License, or (at your option) any later version. | |
14 # | |
15 # This program is distributed in the hope that it will be useful, but | |
16 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
18 # General Public License for more details. | |
19 # | |
20 # You should have received a copy of the GNU General Public License | |
21 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
22 | |
23 | |
14 | 24 import tempfile |
3 | 25 import unittest |
36 | 26 import base64 |
3 | 27 |
11 | 28 from PIL import ImageChops |
3 | 29 from Toolbox import * |
13 | 30 from xml.dom import minidom |
3 | 31 |
32 _LOCAL = None | |
33 _REMOTE = None | |
34 | |
35 | |
36 def SetOrthancParameters(local, remote): | |
37 global _LOCAL, _REMOTE | |
38 _LOCAL = local | |
39 _REMOTE = remote | |
40 | |
41 | |
14 | 42 def ExtractDicomTags(rawDicom, tags): |
43 with tempfile.NamedTemporaryFile(delete = True) as f: | |
44 f.write(rawDicom) | |
45 f.flush() | |
45 | 46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 47 |
48 result = [] | |
49 for tag in tags: | |
50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
51 if match == None: | |
52 result.append('') | |
53 else: | |
54 result.append(match.group(1)) | |
55 | |
56 return result | |
57 | |
58 | |
15 | 59 def InstallLuaScript(path): |
60 with open(GetDatabasePath(path), 'r') as f: | |
61 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
62 | |
63 | |
64 def UninstallLuaCallbacks(): | |
65 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
43 | 66 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
15 | 67 |
68 | |
21
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69 def CompareLists(a, b): |
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70 if len(a) != len(b): |
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71 return False |
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72 |
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73 for i in range(len(a)): |
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74 d = a[i] - b[i] |
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75 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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76 return False |
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77 |
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78 return True |
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79 |
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80 |
80
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81 def CompareTags(a, b, tagsToIgnore): |
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82 for i in tagsToIgnore: |
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83 if i in a: |
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84 del a[i] |
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85 if i in b: |
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86 del b[i] |
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87 |
123 | 88 if a.keys() == b.keys(): |
89 return True | |
90 else: | |
91 print('Mismatch in tags: %s' % str(set(a.keys()) ^ set(b.keys()))) | |
92 return False | |
80
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93 |
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94 |
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95 def CallFindScu(args): |
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96 p = subprocess.Popen([ FindExecutable('findscu'), |
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97 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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98 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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99 stderr=subprocess.PIPE) |
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100 return p.communicate()[1] |
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101 |
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102 |
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103 def CallMoveScu(args): |
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104 subprocess.check_call([ FindExecutable('movescu'), |
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105 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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106 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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107 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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108 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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109 stderr=subprocess.PIPE) |
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110 |
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111 |
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112 |
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113 def GenerateTestSequence(): |
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114 return [ |
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115 { |
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116 'StudyDescription': 'Hello^', |
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117 'ReferencedStudySequence' : [ |
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118 { |
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119 'StudyDescription': 'Toto', |
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120 }, |
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121 { |
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122 'StudyDescription': 'Tata', |
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123 }, |
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124 ] |
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125 }, |
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126 { |
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127 'StudyDescription': 'Sébastien^', |
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128 'StudyDate' : '19700202', |
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129 } |
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130 ] |
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131 |
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132 |
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133 |
15 | 134 |
3 | 135 class Orthanc(unittest.TestCase): |
136 def setUp(self): | |
83 | 137 if (sys.version_info >= (3, 0)): |
138 # Remove annoying warnings about unclosed socket in Python 3 | |
139 import warnings | |
140 warnings.simplefilter("ignore", ResourceWarning) | |
141 | |
3 | 142 DropOrthanc(_LOCAL) |
143 DropOrthanc(_REMOTE) | |
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144 UninstallLuaCallbacks() |
45 | 145 #print "In test", self._testMethodName |
44
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146 |
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147 def AssertSameImages(self, truth, url): |
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148 im = GetImage(_REMOTE, url) |
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149 self.assertTrue(CompareLists(truth, im.getdata())) |
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150 |
3 | 151 |
152 def test_system(self): | |
153 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
154 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
155 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
156 | |
157 def test_upload(self): | |
158 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
159 self.assertEqual('Success', u['Status']) | |
160 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
161 self.assertEqual('AlreadyStored', u['Status']) | |
162 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
163 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
164 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
165 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
166 | |
167 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
168 self.assertEqual('20070101', i['StudyDate']) | |
169 | |
170 | |
5 | 171 def test_upload_2(self): |
3 | 172 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
173 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
174 self.assertEqual(i, instance['ID']) | |
175 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
176 instance['MainDicomTags']['SOPInstanceUID']) | |
177 | |
178 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
179 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
180 series['MainDicomTags']['SeriesInstanceUID']) | |
181 | |
182 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
183 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
184 study['MainDicomTags']['StudyInstanceUID']) | |
185 | |
186 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
187 self.assertEqual('ozp00SjY2xG', | |
188 patient['MainDicomTags']['PatientID']) | |
189 | |
190 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
191 self.assertEqual(2472, len(dicom)) | |
192 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
193 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
194 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
195 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
196 | |
197 | |
5 | 198 def test_images(self): |
199 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
200 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 201 |
5 | 202 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
203 self.assertEqual("L", im.mode) | |
204 self.assertEqual(512, im.size[0]) | |
205 self.assertEqual(358, im.size[1]) | |
206 | |
207 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
208 self.assertEqual("L", im.mode) | |
209 self.assertEqual(512, im.size[0]) | |
210 self.assertEqual(358, im.size[1]) | |
211 | |
212 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
213 self.assertEqual(512, im.size[0]) | |
214 self.assertEqual(358, im.size[1]) | |
215 | |
216 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
217 self.assertEqual("L", im.mode) | |
218 self.assertEqual(512, im.size[0]) | |
219 self.assertEqual(358, im.size[1]) | |
220 | |
221 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
222 self.assertEqual("L", im.mode) | |
223 self.assertEqual(512, im.size[0]) | |
224 self.assertEqual(358, im.size[1]) | |
225 | |
226 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
227 self.assertEqual(512, im.size[0]) | |
228 self.assertEqual(358, im.size[1]) | |
64 | 229 |
230 # This is Little Endian Explicit | |
231 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
232 | |
6 | 233 |
234 def test_hierarchy(self): | |
235 UploadFolder(_REMOTE, 'Brainix/Epi') | |
236 UploadFolder(_REMOTE, 'Brainix/Flair') | |
237 UploadFolder(_REMOTE, 'Knee/T1') | |
238 UploadFolder(_REMOTE, 'Knee/T2') | |
239 | |
240 p = DoGet(_REMOTE, '/patients') | |
241 s = DoGet(_REMOTE, '/studies') | |
242 t = DoGet(_REMOTE, '/series') | |
243 self.assertEqual(2, len(p)) | |
244 self.assertEqual(2, len(s)) | |
245 self.assertEqual(4, len(t)) | |
246 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
247 | |
248 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
249 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
250 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
251 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
252 | |
253 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
254 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
255 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
256 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
257 | |
258 self.assertTrue(brainixPatient in p) | |
259 self.assertTrue(kneePatient in p) | |
260 self.assertTrue(brainixStudy in s) | |
261 self.assertTrue(kneeStudy in s) | |
262 self.assertTrue(brainixEpi in t) | |
263 self.assertTrue(brainixFlair in t) | |
264 self.assertTrue(kneeT1 in t) | |
265 self.assertTrue(kneeT2 in t) | |
266 | |
267 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
268 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
269 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
270 | |
271 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
272 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
273 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
274 | |
275 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
276 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
277 | |
278 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
279 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
280 | |
281 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
282 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
283 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
284 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
285 | |
286 for patient in p: | |
287 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
288 self.assertEqual(patient, study['ParentPatient']) | |
289 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
290 self.assertEqual(study['ID'], series['ParentStudy']) | |
291 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
292 self.assertEqual(series['ID'], instance['ParentSeries']) | |
293 | |
294 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
295 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
296 | |
297 | |
298 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
299 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
300 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
301 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
302 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
303 self.assertEqual(None, r) | |
304 | |
305 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
306 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
307 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
308 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
309 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
310 self.assertEqual('Study', r['Type']) | |
311 self.assertEqual(kneeStudy, r['ID']) | |
312 | |
313 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
314 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
315 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
316 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
317 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
318 self.assertEqual('Series', r['Type']) | |
319 self.assertEqual(kneeT1, r['ID']) | |
320 | |
321 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
322 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
323 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
324 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
325 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
326 self.assertEqual(None, r) | |
327 | |
328 DropOrthanc(_REMOTE) | |
329 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
330 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 331 |
332 | |
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333 def test_multiframe(self): |
7 | 334 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
335 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
336 | |
337 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
338 self.assertEqual("L", im.mode) | |
339 self.assertEqual(512, im.size[0]) | |
340 self.assertEqual(512, im.size[1]) | |
341 | |
342 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
343 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
344 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
345 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
346 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
347 | |
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348 |
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349 def test_changes(self): |
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350 # Check emptiness |
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351 c = DoGet(_REMOTE, '/changes') |
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352 self.assertEqual(0, len(c['Changes'])) |
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353 self.assertEqual(0, c['Last']) |
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354 self.assertTrue(c['Done']) |
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355 c = DoGet(_REMOTE, '/changes?last') |
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356 self.assertEqual(0, len(c['Changes'])) |
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357 self.assertEqual(0, c['Last']) |
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358 self.assertTrue(c['Done']) |
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359 |
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360 # Add 1 instance |
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361 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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362 c = DoGet(_REMOTE, '/changes') |
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363 begin = c['Last'] |
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364 self.assertEqual(4, len(c['Changes'])) |
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365 self.assertTrue(c['Done']) |
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366 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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367 |
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368 c = DoGet(_REMOTE, '/changes?last') |
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369 self.assertEqual(1, len(c['Changes'])) |
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370 self.assertEqual(begin, c['Last']) |
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371 self.assertTrue(c['Done']) |
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372 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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373 self.assertEqual(1, len(c['Changes'])) |
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374 self.assertEqual(begin, c['Last']) |
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375 self.assertTrue(c['Done']) |
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376 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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377 self.assertEqual(1, len(c['Changes'])) |
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378 self.assertEqual(begin - 1, c['Last']) |
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379 self.assertFalse(c['Done']) |
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380 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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381 self.assertEqual(1, len(c['Changes'])) |
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382 self.assertEqual(begin - 2, c['Last']) |
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383 self.assertFalse(c['Done']) |
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384 |
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385 UploadFolder(_REMOTE, 'Knee/T1') |
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386 UploadFolder(_REMOTE, 'Knee/T2') |
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387 since = begin |
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388 countPatients = 0 |
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389 countStudies = 0 |
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390 countSeries = 0 |
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391 countInstances = 0 |
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392 completed = 0 |
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393 while True: |
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394 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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395 since = c['Last'] |
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396 for i in c['Changes']: |
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397 if i['ResourceType'] == 'Instance': |
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398 countInstances += 1 |
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399 if i['ResourceType'] == 'Patient': |
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400 countPatients += 1 |
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401 if i['ResourceType'] == 'Study': |
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402 countStudies += 1 |
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403 if i['ResourceType'] == 'Series': |
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404 countSeries += 1 |
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405 if i['ChangeType'] == 'NewInstance': |
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406 countInstances += 1 |
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407 if i['ChangeType'] == 'NewPatient': |
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408 countPatients += 1 |
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409 if i['ChangeType'] == 'NewStudy': |
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410 countStudies += 1 |
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411 if i['ChangeType'] == 'NewSeries': |
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412 countSeries += 1 |
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413 if i['ChangeType'] == 'CompletedSeries': |
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414 completed += 1 |
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415 self.assertTrue('ID' in i) |
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416 self.assertTrue('Path' in i) |
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417 self.assertTrue('Seq' in i) |
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418 if c['Done']: |
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419 break |
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420 |
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421 self.assertEqual(2 * 50, countInstances) |
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422 self.assertEqual(2 * 1, countPatients) |
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423 self.assertEqual(2 * 1, countStudies) |
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424 self.assertEqual(2 * 2, countSeries) |
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425 self.assertEqual(0, completed) |
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426 |
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427 |
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428 def test_archive(self): |
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429 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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430 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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431 |
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432 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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433 self.assertEqual(2, len(z.namelist())) |
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434 |
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435 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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436 self.assertEqual(2, len(z.namelist())) |
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437 |
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438 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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439 self.assertEqual(1, len(z.namelist())) |
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440 |
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441 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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442 |
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443 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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444 self.assertEqual(2, len(z.namelist())) |
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445 |
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446 |
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447 def test_media_archive(self): |
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448 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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449 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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450 |
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451 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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452 self.assertEqual(3, len(z.namelist())) |
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453 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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454 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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455 self.assertTrue('DICOMDIR' in z.namelist()) |
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456 |
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457 try: |
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458 os.remove('/tmp/DICOMDIR') |
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459 except: |
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460 # The file does not exist |
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461 pass |
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462 |
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463 z.extract('DICOMDIR', '/tmp') |
45 | 464 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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465 stderr = subprocess.STDOUT).split('\n') |
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466 self.assertEqual(3, len(a)) |
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467 self.assertTrue(a[0].startswith('Warning')) |
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468 self.assertEqual('BasicDirectory', a[1]) |
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469 self.assertEqual('', a[2]) |
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470 |
45 | 471 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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472 stderr = subprocess.STDOUT).split('\n') |
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473 self.assertEqual(1, len(a)) |
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474 self.assertEqual('', a[0]) |
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475 |
45 | 476 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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477 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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478 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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479 |
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480 os.remove('/tmp/DICOMDIR') |
10 | 481 |
482 | |
483 def test_protection(self): | |
484 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
485 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
486 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
487 a = DoGet(_REMOTE, '/patients')[0] | |
488 b = DoGet(_REMOTE, '/patients')[1] | |
489 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
490 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
491 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
492 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
493 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
494 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
495 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
496 | |
497 | |
12 | 498 def test_raw_tags(self): |
10 | 499 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
500 | |
501 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
502 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
503 | |
504 s = '/instances/%s/content/' % i | |
505 | |
506 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
507 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
508 | |
509 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
510 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
511 | |
512 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
513 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
514 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
515 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
516 | |
517 for i in DoGet(_REMOTE, '/instances'): | |
518 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
519 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
520 | |
521 | |
522 def test_raw_tags_mdn(self): | |
523 # Bug reported by Cyril Paulus | |
524 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
525 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
526 | |
527 | |
528 def test_modify_instance(self): | |
529 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
530 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
531 json.dumps({ | |
532 "Replace" : { | |
533 "PatientName" : "hello", | |
534 #"PatientID" : "world" | |
535 }, | |
536 "Remove" : [ "StationName" ], | |
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537 "RemovePrivateTags" : True |
10 | 538 }), |
539 'application/json') | |
540 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
541 | |
542 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
543 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 544 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 545 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
546 | |
547 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
548 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
549 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
550 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
551 | |
552 | |
553 def test_modify_series(self): | |
554 # Upload 4 images from the same series | |
555 for i in range(4): | |
556 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
557 | |
558 origSeries = DoGet(_REMOTE, '/series')[0] | |
559 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
560 '{"Replace":{"PatientName":"Jodogne"}}', | |
561 'application/json')['ID'] | |
562 | |
563 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
564 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
565 self.assertEqual(4, len(instances)) | |
566 for i in instances: | |
567 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
568 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
569 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
570 | |
571 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
572 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
573 | |
574 | |
575 def test_modify_study(self): | |
576 # Upload 4 images from the 2 series of the same study | |
577 for i in range(4): | |
578 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
579 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
580 | |
581 origStudy = DoGet(_REMOTE, '/studies')[0] | |
582 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
583 '{"Replace":{"PatientName":"Jodogne"}}', | |
584 'application/json')['ID'] | |
585 | |
586 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
587 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
588 self.assertEqual(2, len(series)) | |
589 for s in series: | |
590 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
591 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
592 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
593 | |
594 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
595 for i in instances: | |
596 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
597 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
598 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
599 | |
600 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
601 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
602 | |
603 | |
604 def test_anonymize_series(self): | |
605 # Upload 4 images from the same series | |
606 for i in range(4): | |
607 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
608 | |
609 origSeries = DoGet(_REMOTE, '/series')[0] | |
610 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
611 '{}', | |
612 'application/json')['ID'] | |
613 | |
614 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
615 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
616 self.assertEqual(4, len(instances)) | |
617 for i in instances: | |
618 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
619 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
620 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
621 | |
622 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
623 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
624 | |
625 | |
626 def test_anonymize_study(self): | |
627 # Upload 4 images from the 2 series of the same study | |
628 for i in range(4): | |
629 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
630 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
631 | |
632 origStudy = DoGet(_REMOTE, '/studies')[0] | |
633 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
634 '{"Replace":{"PatientName":"Jodogne"}}', | |
635 'application/json')['ID'] | |
636 | |
637 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
638 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
639 self.assertEqual(2, len(series)) | |
640 for s in series: | |
641 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
642 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
643 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
644 | |
645 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
646 for i in instances: | |
647 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
648 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
649 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
650 | |
651 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
652 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 653 |
654 | |
655 | |
656 def test_storescu(self): | |
657 # Check emptiness | |
658 e = DoGet(_REMOTE, '/exports') | |
659 self.assertEqual(0, len(e['Exports'])) | |
660 self.assertEqual(0, e['Last']) | |
661 self.assertTrue(e['Done']) | |
662 e = DoGet(_REMOTE, '/exports?last') | |
663 self.assertEqual(0, len(e['Exports'])) | |
664 self.assertEqual(0, e['Last']) | |
665 self.assertTrue(e['Done']) | |
666 | |
667 # Add 1 instance | |
668 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
669 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
670 | |
671 # Export the instance | |
672 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
673 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
674 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
675 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
676 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
677 | |
678 e = DoGet(_REMOTE, '/exports') | |
679 self.assertEqual(1, len(e['Exports'])) | |
680 self.assertTrue(e['Done']) | |
681 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
682 e = DoGet(_REMOTE, '/exports?limit=1') | |
683 self.assertEqual(1, len(e['Exports'])) | |
684 self.assertTrue(e['Done']) | |
685 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
686 e = DoGet(_REMOTE, '/exports?last') | |
687 self.assertEqual(1, len(e['Exports'])) | |
688 self.assertTrue(e['Done']) | |
689 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
690 seqInstance = e['Last'] | |
691 | |
692 # Export the series | |
693 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
694 | |
695 e = DoGet(_REMOTE, '/exports') | |
696 self.assertEqual(2, len(e['Exports'])) | |
697 self.assertTrue(e['Done']) | |
698 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
699 seqSeries = e['Last'] | |
700 self.assertNotEqual(seqInstance, seqSeries) | |
701 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
702 self.assertEqual(1, len(e['Exports'])) | |
703 self.assertFalse(e['Done']) | |
704 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
705 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
706 self.assertEqual(1, len(e['Exports'])) | |
707 self.assertTrue(e['Done']) | |
708 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
709 e = DoGet(_REMOTE, '/exports?last') | |
710 self.assertEqual(1, len(e['Exports'])) | |
711 self.assertTrue(e['Done']) | |
712 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
713 | |
714 # Export the study | |
715 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
716 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
717 | |
718 # Export the patient | |
719 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
720 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
721 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
722 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
723 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
724 | |
725 e = DoGet(_REMOTE, '/exports') | |
726 self.assertEqual(4, len(e['Exports'])) | |
727 self.assertTrue(e['Done']) | |
728 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
729 seqPatient = e['Last'] | |
730 self.assertNotEqual(seqInstance, seqSeries) | |
731 self.assertNotEqual(seqSeries, seqStudy) | |
732 self.assertNotEqual(seqStudy, seqPatient) | |
733 self.assertTrue(seqInstance < seqSeries) | |
734 self.assertTrue(seqSeries < seqStudy) | |
735 self.assertTrue(seqStudy < seqPatient) | |
736 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
737 self.assertEqual(1, len(e['Exports'])) | |
738 self.assertFalse(e['Done']) | |
739 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
740 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
741 self.assertEqual(1, len(e['Exports'])) | |
742 self.assertFalse(e['Done']) | |
743 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
744 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
745 self.assertEqual(1, len(e['Exports'])) | |
746 self.assertFalse(e['Done']) | |
747 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
748 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
749 self.assertEqual(1, len(e['Exports'])) | |
750 self.assertTrue(e['Done']) | |
751 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
752 e = DoGet(_REMOTE, '/exports?last') | |
753 self.assertEqual(1, len(e['Exports'])) | |
754 self.assertTrue(e['Done']) | |
755 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
756 | |
757 | |
758 # Check the content of the logged information | |
759 e = DoGet(_REMOTE, '/exports')['Exports'] | |
760 | |
761 if 'PatientID' in e[0]: | |
762 # Since Orthanc 0.8.6 | |
763 patient = 'PatientID' | |
764 study = 'StudyInstanceUID' | |
765 series = 'SeriesInstanceUID' | |
766 instance = 'SOPInstanceUID' | |
767 else: | |
768 # Up to Orthanc 0.8.5 | |
769 patient = 'PatientId' | |
770 study = 'StudyInstanceUid' | |
771 series = 'SeriesInstanceUid' | |
772 instance = 'SopInstanceUid' | |
773 | |
774 for k in range(4): | |
775 self.assertTrue('Date' in e[k]) | |
776 self.assertTrue('Seq' in e[k]) | |
777 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
778 | |
779 self.assertEqual(10, len(e[0])) | |
780 self.assertEqual('Instance', e[0]['ResourceType']) | |
781 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
782 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
783 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
784 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
785 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
786 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
787 | |
788 self.assertEqual(9, len(e[1])) | |
789 self.assertEqual('Series', e[1]['ResourceType']) | |
790 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
791 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
792 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
793 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
794 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
795 | |
796 self.assertEqual(8, len(e[2])) | |
797 self.assertEqual('Study', e[2]['ResourceType']) | |
798 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
799 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
800 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
801 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
802 | |
803 self.assertEqual(7, len(e[3])) | |
804 self.assertEqual('Patient', e[3]['ResourceType']) | |
805 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
806 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
807 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
808 | |
809 DropOrthanc(_REMOTE) | |
810 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
811 | |
812 | |
813 def test_store_peer(self): | |
814 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
815 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
816 | |
817 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
818 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
819 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
820 | |
821 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
822 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
823 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
824 | |
825 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
826 | |
827 DropOrthanc(_REMOTE) | |
828 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
829 | |
830 | |
831 def test_bulk_storescu(self): | |
832 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
833 | |
834 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
835 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
836 | |
837 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
838 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
839 | |
840 DropOrthanc(_LOCAL) | |
841 | |
842 # Send using patient's UUID | |
843 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
844 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
845 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
846 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
847 | |
848 | |
849 def test_color(self): | |
850 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
851 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
852 self.assertEqual("RGB", im.mode) | |
853 self.assertEqual(41, im.size[0]) | |
854 self.assertEqual(41, im.size[1]) | |
855 | |
856 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 857 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 858 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
859 | |
860 | |
12 | 861 def test_faking_ruby_put(self): |
862 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
863 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
864 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
865 a = DoGet(_REMOTE, '/patients')[0] | |
866 b = DoGet(_REMOTE, '/patients')[1] | |
867 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
868 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
869 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
870 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
871 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
872 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
873 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
874 | |
875 | |
876 def test_faking_ruby_delete(self): | |
877 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
878 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
879 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
880 a = DoGet(_REMOTE, '/patients')[0] | |
881 b = DoGet(_REMOTE, '/patients')[1] | |
882 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
883 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
884 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
885 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
886 | |
887 | |
888 def test_faking_google_put(self): | |
889 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
890 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
891 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
892 a = DoGet(_REMOTE, '/patients')[0] | |
893 b = DoGet(_REMOTE, '/patients')[1] | |
894 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
895 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
896 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
897 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
898 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
899 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
900 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
901 | |
902 | |
903 def test_faking_google_delete(self): | |
904 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
905 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
906 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
907 a = DoGet(_REMOTE, '/patients')[0] | |
908 b = DoGet(_REMOTE, '/patients')[1] | |
909 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
910 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
911 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
912 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
913 | |
914 | |
915 def test_lua(self): | |
916 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
917 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
918 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
919 | |
920 | |
921 def test_metadata(self): | |
922 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
923 p = DoGet(_REMOTE, '/patients')[0] | |
924 i = DoGet(_REMOTE, '/instances')[0] | |
925 | |
926 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
927 self.assertEqual(1, len(m)) | |
928 self.assertEqual('LastUpdate', m[0]) | |
929 | |
930 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
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931 self.assertEqual(6, len(m)) |
12 | 932 self.assertTrue('IndexInSeries' in m) |
933 self.assertTrue('ReceptionDate' in m) | |
934 self.assertTrue('RemoteAET' in m) | |
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935 self.assertTrue('Origin' in m) |
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936 self.assertTrue('TransferSyntax' in m) |
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937 self.assertTrue('SopClassUid' in m) |
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938 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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939 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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940 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
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941 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k |
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942 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4') |
12 | 943 |
944 # Play with custom metadata | |
945 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
946 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
947 self.assertEqual(2, len(m)) | |
948 self.assertTrue('LastUpdate' in m) | |
949 self.assertTrue('5555' in m) | |
950 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
951 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
952 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
953 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
954 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
955 self.assertEqual(1, len(m)) | |
956 self.assertTrue('LastUpdate' in m) | |
13 | 957 |
958 | |
959 def test_statistics(self): | |
960 # Upload 16 instances | |
961 for i in range(4): | |
962 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
963 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
964 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
965 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
966 | |
967 s = DoGet(_REMOTE, '/statistics') | |
968 self.assertEqual(16, s['CountInstances']) | |
969 self.assertEqual(2, s['CountPatients']) | |
970 self.assertEqual(2, s['CountStudies']) | |
971 self.assertEqual(4, s['CountSeries']) | |
972 d = int(s['TotalUncompressedSize']) | |
973 | |
974 e = 0 | |
975 for patient in DoGet(_REMOTE, '/patients'): | |
976 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
977 self.assertEqual(8, s['CountInstances']) | |
978 self.assertEqual(1, s['CountStudies']) | |
979 self.assertEqual(2, s['CountSeries']) | |
980 e += int(s['UncompressedSize']) | |
981 | |
982 for study in DoGet(_REMOTE, '/studies'): | |
983 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
984 self.assertEqual(8, s['CountInstances']) | |
985 self.assertEqual(2, s['CountSeries']) | |
986 e += int(s['UncompressedSize']) | |
987 | |
988 for series in DoGet(_REMOTE, '/series'): | |
989 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
990 self.assertEqual(4, s['CountInstances']) | |
991 e += int(s['UncompressedSize']) | |
992 | |
993 self.assertEqual(3 * d, e) | |
994 | |
995 | |
996 def test_custom_attachment(self): | |
997 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
998 patient = DoGet(_REMOTE, '/patients')[0] | |
999 instance = DoGet(_REMOTE, '/instances')[0] | |
1000 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
1001 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1002 | |
1003 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1004 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
1005 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1006 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
1007 | |
1008 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1009 hello = 'hellohellohellohellohellohellohellohellohello' | |
1010 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1011 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1012 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1013 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1014 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1015 | |
1016 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1017 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1018 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1019 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1020 size + | |
1021 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1022 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1023 | |
1024 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1025 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1026 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1027 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1028 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1029 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1030 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1031 | |
1032 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1033 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1034 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1035 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1036 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1037 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1038 | |
1039 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1040 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1041 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1042 | |
1043 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1044 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1045 | |
1046 | |
1047 def test_incoming_storescu(self): | |
1048 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1049 subprocess.check_call([ FindExecutable('storescu'), |
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1050 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1051 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1052 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1053 | |
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1054 i = DoGet(_REMOTE, '/instances') |
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1055 self.assertEqual(1, len(i)) |
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1056 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1057 self.assertEqual(6, len(m)) |
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1058 self.assertTrue('IndexInSeries' in m) |
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1059 self.assertTrue('ReceptionDate' in m) |
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1060 self.assertTrue('RemoteAET' in m) |
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|
1061 self.assertTrue('Origin' in m) |
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1062 self.assertTrue('TransferSyntax' in m) |
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1063 self.assertTrue('SopClassUid' in m) |
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1064 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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1065 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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1066 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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1067 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1') |
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1068 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7') |
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1069 |
13 | 1070 |
1071 def test_incoming_findscu(self): | |
1072 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1073 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1074 | |
1075 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1076 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1077 self.assertEqual(2, len(patientNames)) | |
1078 self.assertTrue('Test Patient BG ' in patientNames) | |
1079 self.assertTrue('Anonymized' in patientNames) | |
1080 | |
1081 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1082 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1083 self.assertEqual(2, len(series)) | |
1084 self.assertTrue('20070208' in series) | |
1085 self.assertTrue('19980312' in series) | |
1086 | |
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ModalitiesInStudy subtest
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1087 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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1088 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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1089 self.assertEqual(1, len(series)) |
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ModalitiesInStudy subtest
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1090 self.assertTrue('19980312' in series) |
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ModalitiesInStudy subtest
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1091 |
13 | 1092 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1093 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1094 self.assertEqual(1, len(series)) | |
1095 | |
1096 # Test the "CaseSentitivePN" flag (false by default) | |
1097 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1098 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1099 self.assertEqual(1, len(series)) | |
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Test returning sequence values
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1100 |
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Test returning sequence values
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1101 # Test returning sequence values (only since Orthanc 0.9.5) |
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1102 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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1103 sequences = re.findall('\(0008,2112\)', i) |
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1104 self.assertEqual(1, len(sequences)) |
70 | 1105 |
1106 # Test range search (buggy if Orthanc <= 0.9.6) | |
1107 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1108 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1109 self.assertEqual(2, len(studies)) | |
1110 self.assertTrue('20070208' in studies) | |
1111 self.assertTrue('19980312' in studies) | |
1112 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1113 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1114 self.assertEqual(1, len(studies)) | |
1115 self.assertTrue('19980312' in studies) | |
1116 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1117 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1118 self.assertEqual(1, len(studies)) | |
1119 self.assertTrue('19980312' in studies) | |
13 | 1120 |
1121 | |
1122 def test_incoming_movescu(self): | |
1123 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1124 | |
1125 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
17 | 1126 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1127 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
1128 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
1129 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1130 | |
1131 | |
1132 def test_findscu(self): | |
1133 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1134 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1135 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1136 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1137 | |
1138 # Test the "find-patient" level | |
1139 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1140 self.assertEqual(1, len(p)) | |
1141 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1142 | |
1143 # Test wildcards constraints. The "LO" value representation | |
1144 # for PatientID is always case-sensitive, but the "PN" for | |
1145 # PatientName might depend on the implementation: | |
1146 # "GenerateConfigurationForTests.py" will force it to be case | |
1147 # insensitive (which was the default until Orthanc 0.8.6). | |
1148 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1149 self.assertEqual(1, len(p)) | |
1150 | |
1151 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1152 self.assertEqual(1, len(p)) | |
1153 | |
1154 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1155 self.assertEqual(1, len(p)) | |
1156 | |
1157 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1158 self.assertEqual(1, len(p)) | |
1159 | |
1160 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1161 self.assertEqual(0, len(p)) | |
1162 | |
1163 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1164 self.assertEqual(0, len(p)) | |
1165 | |
1166 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1167 self.assertEqual(0, len(p)) | |
1168 | |
1169 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1170 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1171 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1172 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1173 | |
1174 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1175 self.assertEqual(2, len(p)) | |
1176 | |
1177 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1178 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1179 self.assertEqual(1, len(s)) | |
1180 self.assertEqual('20070208', s[0]['StudyDate']) | |
1181 | |
1182 # Test range searches | |
1183 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1184 'StudyDate' : '-20070101' }) | |
1185 self.assertEqual(0, len(t)) | |
1186 | |
1187 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1188 'StudyDate' : '20090101-' }) | |
1189 self.assertEqual(0, len(t)) | |
1190 | |
1191 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1192 'StudyDate' : '20070101-' }) | |
1193 self.assertEqual(1, len(t)) | |
1194 | |
1195 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1196 'StudyDate' : '-20090101' }) | |
1197 self.assertEqual(1, len(t)) | |
1198 | |
1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1200 'StudyDate' : '20070207-20070207' }) | |
1201 self.assertEqual(0, len(t)) | |
1202 | |
1203 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1204 'StudyDate' : '20070208-20070208' }) | |
1205 self.assertEqual(1, len(t)) | |
1206 | |
1207 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1208 'StudyDate' : '20070209-20070209' }) | |
1209 self.assertEqual(0, len(t)) | |
1210 | |
1211 # Test the ModalitiesInStudy tag | |
1212 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1213 'PatientID' : 'B9uTHKOZ', | |
1214 'ModalitiesInStudy' : 'US' }) | |
1215 self.assertEqual(0, len(t)) | |
1216 | |
1217 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1218 'PatientID' : 'B9uTHKOZ', | |
1219 'ModalitiesInStudy' : 'CT' }) | |
1220 self.assertEqual(1, len(t)) | |
1221 | |
1222 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1223 'PatientID' : 'B9uTHKOZ', | |
1224 'ModalitiesInStudy' : 'US\\CT' }) | |
1225 self.assertEqual(1, len(t)) | |
1226 | |
1227 # Test the "find-series" level | |
1228 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1229 'PatientID' : 'B9uTHKOZ', | |
1230 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1231 self.assertEqual(1, len(t)) | |
1232 | |
1233 # Test "\" separator | |
1234 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1235 'PatientID' : 'B9uTHKOZ', | |
1236 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1237 'Modality' : 'MR\\CT\\US' }) | |
1238 self.assertEqual(1, len(t)) | |
1239 | |
1240 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1241 'PatientID' : 'B9uTHKOZ', | |
1242 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1243 'Modality' : 'MR\\US' }) | |
1244 self.assertEqual(0, len(t)) | |
1245 | |
1246 | |
1247 def test_update_modalities(self): | |
1248 try: | |
1249 DoDelete(_REMOTE, '/modalities/toto') | |
1250 except: | |
1251 pass | |
1252 try: | |
1253 DoDelete(_REMOTE, '/modalities/tata') | |
1254 except: | |
1255 pass | |
1256 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1257 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
116 | 1258 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer |
1259 DoDelete(_REMOTE, '/modalities/tata') | |
124 | 1260 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoUniversalWildcard' ]) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1261 DoDelete(_REMOTE, '/modalities/tata') |
1a19f953f53c
also test GenericNoWildcardInDates
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1262 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcardInDates' ]) |
116 | 1263 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ])) |
13 | 1264 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) |
1265 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1266 DoDelete(_REMOTE, '/modalities/toto') | |
1267 DoDelete(_REMOTE, '/modalities/tata') | |
1268 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1269 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1270 | |
1271 | |
1272 def test_update_peers(self): | |
1273 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1274 try: | |
1275 DoDelete(_REMOTE, '/peers/toto') | |
1276 except: | |
1277 pass | |
1278 try: | |
1279 DoDelete(_REMOTE, '/peers/tata') | |
1280 except: | |
1281 pass | |
1282 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1283 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1284 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1285 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1286 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1287 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1288 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1289 DoDelete(_REMOTE, '/peers/toto') | |
1290 DoDelete(_REMOTE, '/peers/tata') | |
1291 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1292 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1293 | |
1294 | |
1295 def test_mesterhazy_modification(self): | |
1296 # When I modify a series ( eg. curl | |
1297 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1298 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1299 # series is added to a new Study, instead of the existing | |
1300 # Study. Fixed in Orthanc 0.7.5 | |
1301 | |
1302 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1303 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1304 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1305 | |
1306 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1307 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1308 | |
1309 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1310 | |
1311 | |
1312 def test_create(self): | |
1313 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1314 json.dumps({ | |
1315 'PatientName' : 'Jodogne', | |
1316 'Modality' : 'CT', | |
58 | 1317 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1318 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1319 })) | |
1320 | |
1321 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1322 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1323 | |
1324 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1325 self.assertEqual((5, 5), png.size) | |
1326 | |
38 | 1327 j = DoGet(_REMOTE, i['Path']) |
1328 self.assertEqual('Instance', j['Type']) | |
1329 self.assertEqual(j['ID'], i['ID']) | |
1330 | |
13 | 1331 |
1332 def test_pilates(self): | |
1333 # "SCU failed error when accessing orthanc with osirix" by | |
1334 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1335 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1336 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1337 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1338 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1339 | |
1340 | |
1341 def test_shared_tags(self): | |
1342 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1343 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1344 p = DoGet(_REMOTE, '/patients')[0] | |
1345 | |
1346 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1347 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1348 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1349 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1350 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1351 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1352 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1353 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1354 | |
1355 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1356 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1357 | |
1358 | |
1359 def test_modules(self): | |
1360 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1361 p = DoGet(_REMOTE, '/patients')[0] | |
1362 s = DoGet(_REMOTE, '/studies')[0] | |
1363 t = DoGet(_REMOTE, '/series')[0] | |
1364 | |
1365 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1366 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1367 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1368 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1369 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1370 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1371 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1372 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1373 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1374 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1375 | |
1376 | |
1377 def test_auto_directory(self): | |
1378 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1379 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1380 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
1381 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools')) |
13 | 1382 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) |
1383 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1384 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1385 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1386 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1387 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1388 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1389 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1390 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1391 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1392 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1393 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1394 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1395 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1396 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1397 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1398 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1399 |
1400 | |
1401 def test_echo(self): | |
1402 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1403 | |
1404 | |
1405 def test_xml(self): | |
1406 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1407 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1408 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1409 self.assertEqual(len(items), len(json)) | |
1410 | |
1411 self.assertTrue('dicom-conformance' in json) | |
1412 | |
1413 ok = False | |
1414 for i in items: | |
1415 if i.childNodes[0].data == 'dicom-conformance': | |
1416 ok = True | |
1417 self.assertTrue(ok) | |
1418 | |
1419 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1420 def test_googlecode_issue_16(self): |
13 | 1421 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1422 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1423 self.assertEqual('0018,1063', t) | |
1424 | |
1425 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1426 def test_googlecode_issue_22(self): |
13 | 1427 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1428 a = [ | |
1429 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1430 "c69eee9a51eea3e8611e82e578897254", | |
1431 "315666be83e2d0111c77bc0996d84901", | |
1432 "3e27aa959d911172c48a1436443c72b1", | |
1433 "958642c9e7e9d232d3869faff546058c", | |
1434 "5e7ea8e3e4230cae707d143481355c59", | |
1435 "eda37f83558d858a596175aed8b2ad47", | |
1436 "486713bd2895c4ecbe0e97715ac7f80a", | |
1437 "091ef729eb169e67da8a0faa9631f9a8", | |
1438 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1439 "e2f39e85896fe58876654b94cd0b5013", | |
1440 "6fd2129e4950abbe1be053bc814d5da8", | |
1441 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1442 "746f808582156734dd6b6fdfd3a0b72c", | |
1443 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1444 "806b8b3e300c615099c11a5ec23465aa", | |
1445 "7c836aa298ba6eef96434579af631a11", | |
1446 "a0357dc9f4f72d73a885c33d7c287446", | |
1447 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1448 "8b114c526b8cbed6cad8a3248b7b480c", | |
1449 "44e6670f127e612a2b4aa60a0d207698", | |
1450 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1451 "95c796c2fa8f59018b15cf2987b1f79b", | |
1452 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1453 ] | |
1454 | |
1455 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1456 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1457 | |
1458 for i in range(len(a)): | |
1459 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1460 | |
1461 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1462 def test_googlecode_issue_19(self): |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1463 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1464 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1465 | |
1466 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1467 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1468 |
1469 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1470 def test_googlecode_issue_37(self): |
13 | 1471 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1472 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1473 | |
1474 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1475 'CaseSensitive' : True, | |
1476 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1477 self.assertEqual(1, len(a)) | |
14 | 1478 |
1479 | |
1480 def test_rest_find(self): | |
1481 # Upload 8 instances | |
1482 for i in range(2): | |
1483 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1484 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1485 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1486 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1487 | |
1488 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1489 'CaseSensitive' : False, | |
1490 'Query' : { 'PatientName' : '*n*' }}) | |
1491 self.assertEqual(2, len(a)) | |
1492 | |
1493 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1494 'CaseSensitive' : True, | |
1495 'Query' : { 'PatientName' : '*n*' }}) | |
1496 self.assertEqual(0, len(a)) | |
1497 | |
1498 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1499 'Level' : 'Patient', | |
1500 'CaseSensitive' : False, | |
1501 'Query' : { 'PatientName' : '*ne*' }}) | |
1502 self.assertEqual(1, len(a)) | |
1503 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1504 | |
1505 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1506 'CaseSensitive' : True, | |
1507 'Query' : { 'PatientName' : '*ne*' }}) | |
1508 self.assertEqual(0, len(a)) | |
1509 | |
1510 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1511 'CaseSensitive' : True, | |
1512 'Query' : { 'PatientName' : '*NE*' }}) | |
1513 self.assertEqual(1, len(a)) | |
1514 | |
1515 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1516 'CaseSensitive' : True, | |
1517 'Query' : { 'PatientName' : '*NE*' }}) | |
1518 self.assertEqual(2, len(a)) | |
1519 | |
1520 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1521 'CaseSensitive' : True, | |
1522 'Query' : { 'PatientName' : '*NE*' }}) | |
1523 self.assertEqual(4, len(a)) | |
1524 | |
1525 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1526 self.assertEqual(2, len(a)) | |
1527 | |
1528 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1529 self.assertEqual(2, len(a)) | |
1530 | |
1531 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1532 self.assertEqual(4, len(a)) | |
1533 | |
1534 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1535 self.assertEqual(8, len(a)) | |
1536 | |
1537 | |
1538 def test_rest_query_retrieve(self): | |
1539 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1540 | |
1541 # Upload 8 instances | |
1542 for i in range(2): | |
1543 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1544 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1545 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1546 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1547 | |
1548 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1549 for p in DoGet(_REMOTE, '/patients'): | |
1550 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1551 DoDelete(_REMOTE, '/patients/%s' % p) | |
1552 | |
1553 for q in DoGet(_REMOTE, '/queries'): | |
1554 DoDelete(_REMOTE, '/queries/%s' % q) | |
1555 | |
1556 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1557 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1558 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1559 'Query' : { |
1560 'PatientName' : '*NE*', | |
1561 'StudyDate' : '*', | |
1562 }})['ID'] | |
14 | 1563 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1564 | |
1565 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1566 self.assertTrue('answers' in b) | |
1567 self.assertTrue('level' in b) | |
1568 self.assertTrue('modality' in b) | |
1569 self.assertTrue('query' in b) | |
1570 self.assertTrue('retrieve' in b) | |
1571 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1572 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1573 | |
1574 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1575 self.assertEqual(2, len(q)) |
14 | 1576 self.assertTrue('PatientName' in q) |
27 | 1577 self.assertTrue('StudyDate' in q) |
14 | 1578 self.assertEqual('*NE*', q['PatientName']) |
27 | 1579 self.assertEqual('*', q['StudyDate']) |
14 | 1580 |
1581 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1582 | |
1583 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1584 self.assertTrue('content' in s) | |
1585 self.assertTrue('retrieve' in s) | |
1586 | |
1587 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1588 self.assertEqual('887', s['PatientID']) | |
1589 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1590 | |
1591 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1592 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1593 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1594 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1595 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1596 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1597 | |
112 | 1598 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type) |
14 | 1599 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
1600 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1601 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1602 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1603 | |
1604 DoDelete(_REMOTE, '/queries/%s' % a) | |
1605 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1606 | |
1607 | |
1608 def test_parent(self): | |
1609 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1610 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1611 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1612 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1613 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
1614 self.assertEqual(instance, u) |
14 | 1615 |
1616 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1617 self.assertEqual('Patient', a['Type']) | |
1618 self.assertEqual(patient, a['ID']) | |
1619 | |
1620 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1621 self.assertEqual('Patient', a['Type']) | |
1622 self.assertEqual(patient, a['ID']) | |
1623 | |
1624 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1625 self.assertEqual('Study', a['Type']) | |
1626 self.assertEqual(study, a['ID']) | |
1627 | |
1628 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1629 self.assertEqual('Patient', a['Type']) | |
1630 self.assertEqual(patient, a['ID']) | |
1631 | |
1632 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1633 self.assertEqual('Study', a['Type']) | |
1634 self.assertEqual(study, a['ID']) | |
1635 | |
1636 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1637 self.assertEqual('Series', a['Type']) | |
1638 self.assertEqual(series, a['ID']) | |
1639 | |
1640 | |
1641 def test_shanon(self): | |
1642 def Anonymize(instance, replacements = {}): | |
119 | 1643 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { |
1644 'Replace' : replacements, | |
1645 'Force' : True, | |
1646 }, 'application/json') | |
14 | 1647 |
1648 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1649 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1650 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1651 | |
1652 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1653 ids = [ 'ozp00SjY2xG', | |
1654 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1655 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1656 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1657 | |
1658 a = ExtractDicomTags(Anonymize(u), tags) | |
1659 for i in range(4): | |
1660 self.assertNotEqual(ids[i], a[i]) | |
1661 self.assertTrue(a[4].startswith('Orthanc')) | |
1662 | |
1663 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1664 for i in range(4): | |
1665 self.assertNotEqual(ids[i], a[i]) | |
1666 self.assertFalse(a[4].startswith('Orthanc')) | |
1667 | |
1668 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1669 self.assertEqual('instance', a[3]) | |
1670 self.assertFalse(a[4].startswith('Orthanc')) | |
1671 | |
1672 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1673 self.assertEqual('series', a[2]) | |
1674 self.assertFalse(a[4].startswith('Orthanc')) | |
1675 | |
1676 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1677 self.assertEqual('study', a[1]) | |
1678 self.assertFalse(a[4].startswith('Orthanc')) | |
1679 | |
1680 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1681 self.assertEqual('patient', a[0]) | |
1682 self.assertFalse(a[4].startswith('Orthanc')) | |
1683 | |
1684 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1685 'StudyInstanceUID' : 'study', | |
1686 'SeriesInstanceUID' : 'series', | |
1687 'SOPInstanceUID' : 'instance' }), tags) | |
1688 self.assertEqual('patient', a[0]) | |
1689 self.assertFalse(a[4].startswith('Orthanc')) | |
1690 | |
1691 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1692 | |
1693 | |
1694 def test_shanon_2(self): | |
1695 def Modify(instance, replacements = {}): | |
119 | 1696 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { |
1697 'Replace' : replacements, | |
1698 'Force': True, | |
1699 }, 'application/json') | |
14 | 1700 |
1701 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1702 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1703 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1704 | |
1705 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1706 ids = [ 'ozp00SjY2xG', | |
1707 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1708 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1709 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1710 | |
1711 a = ExtractDicomTags(Modify(u), tags) | |
1712 self.assertEqual(ids[0], a[0]) | |
1713 self.assertEqual(ids[1], a[1]) | |
1714 self.assertEqual(ids[2], a[2]) | |
1715 self.assertNotEqual(ids[3], a[3]) | |
1716 self.assertEqual(0, len(a[4])) | |
1717 | |
1718 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1719 self.assertEqual(ids[0], a[0]) | |
1720 self.assertEqual(ids[1], a[1]) | |
1721 self.assertEqual(ids[2], a[2]) | |
1722 self.assertEqual('instance', a[3]) | |
1723 | |
1724 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1725 self.assertEqual(ids[0], a[0]) | |
1726 self.assertEqual(ids[1], a[1]) | |
1727 self.assertEqual('series', a[2]) | |
1728 self.assertNotEqual(ids[3], a[3]) | |
1729 | |
1730 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1731 self.assertEqual(ids[0], a[0]) | |
1732 self.assertEqual('study', a[1]) | |
1733 self.assertNotEqual(ids[2], a[2]) | |
1734 self.assertNotEqual(ids[3], a[3]) | |
1735 | |
1736 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1737 self.assertEqual('patient', a[0]) | |
1738 self.assertNotEqual(ids[1], a[1]) | |
1739 self.assertNotEqual(ids[2], a[2]) | |
1740 self.assertNotEqual(ids[3], a[3]) | |
1741 | |
1742 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1743 'StudyInstanceUID' : 'study', | |
1744 'SeriesInstanceUID' : 'series', | |
1745 'SOPInstanceUID' : 'instance' }), tags) | |
1746 self.assertEqual('patient', a[0]) | |
1747 self.assertEqual('study', a[1]) | |
1748 self.assertEqual('series', a[2]) | |
1749 self.assertEqual('instance', a[3]) | |
1750 | |
1751 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1752 | |
1753 | |
1754 def test_instances_tags(self): | |
1755 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1756 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1757 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1758 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1759 | |
1760 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1761 self.assertEqual(2, len(i)) | |
1762 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1763 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1764 | |
1765 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1766 self.assertEqual(2, len(i)) | |
1767 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1768 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1769 | |
1770 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1771 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1772 self.assertEqual(1, len(i)) | |
1773 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1774 | |
1775 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1776 self.assertEqual(1, len(i)) | |
1777 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1778 | |
1779 | |
1780 def test_lookup(self): | |
1781 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1782 self.assertEqual(0, len(a)) | |
1783 | |
1784 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1785 | |
1786 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1787 self.assertEqual(1, len(a)) | |
1788 self.assertEqual('Patient', a[0]['Type']) | |
1789 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1790 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1791 | |
1792 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1793 self.assertEqual(1, len(a)) | |
1794 self.assertEqual('Study', a[0]['Type']) | |
1795 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1796 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1797 | |
1798 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1799 self.assertEqual(1, len(a)) | |
1800 self.assertEqual('Series', a[0]['Type']) | |
1801 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1802 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1803 | |
1804 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1805 self.assertEqual(1, len(a)) | |
1806 self.assertEqual('Instance', a[0]['Type']) | |
1807 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1808 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1809 | |
1810 DropOrthanc(_REMOTE) | |
1811 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1812 self.assertEqual(0, len(a)) | |
1813 | |
15 | 1814 |
1815 def test_autorouting(self): | |
1816 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
1817 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
1818 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
1819 | |
1820 # Check that this version is >= 0.8.0 | |
1821 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
1822 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1823 | |
1824 UploadInstance(_REMOTE, knee1) | |
1825 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1826 | |
1827 DropOrthanc(_REMOTE) | |
1828 DropOrthanc(_LOCAL) | |
1829 InstallLuaScript('Lua/Autorouting.lua') | |
1830 UploadInstance(_REMOTE, knee1) | |
1831 UploadInstance(_REMOTE, knee2) | |
1832 UploadInstance(_REMOTE, other) | |
1833 WaitEmpty(_REMOTE) | |
1834 UninstallLuaCallbacks() | |
1835 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
1836 | |
1837 DropOrthanc(_REMOTE) | |
1838 DropOrthanc(_LOCAL) | |
1839 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
1840 UploadInstance(_REMOTE, knee1) | |
1841 UploadInstance(_REMOTE, knee2) | |
1842 UploadInstance(_REMOTE, other) | |
1843 WaitEmpty(_REMOTE) | |
1844 UninstallLuaCallbacks() | |
1845 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
1846 | |
1847 DropOrthanc(_REMOTE) | |
1848 DropOrthanc(_LOCAL) | |
1849 InstallLuaScript('Lua/AutoroutingModification.lua') | |
1850 UploadInstance(_REMOTE, knee1) | |
1851 WaitEmpty(_REMOTE) | |
1852 UninstallLuaCallbacks() | |
1853 i = DoGet(_LOCAL, '/instances') | |
1854 self.assertEqual(1, len(i)) | |
1855 | |
1856 with tempfile.NamedTemporaryFile(delete = True) as f: | |
1857 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
1858 f.flush() | |
45 | 1859 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 1860 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
1861 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
1862 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 1863 |
1864 | |
1865 def test_storescu_rf(self): | |
1866 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
1867 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1868 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1869 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 1870 |
1871 | |
1872 def test_anonymize_instance(self): | |
1873 def AnonymizeAndUpload(instanceId, parameters): | |
1874 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
1875 'application/json'), 'application/dicom')['ID'] | |
1876 | |
1877 def ModifyAndUpload(instanceId, parameters): | |
1878 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
1879 'application/json'), 'application/dicom')['ID'] | |
1880 | |
1881 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
1882 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
1883 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
1884 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
1885 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
1886 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1887 | |
1888 b = AnonymizeAndUpload(a, '{}') | |
1889 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1890 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1891 | |
1892 # Keep private tag (only OK since Orthanc 0.8.0) | |
1893 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
1894 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1895 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1896 | |
1897 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
1898 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1899 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1900 | |
1901 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
1902 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1903 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
1904 | |
1905 # Examples from the Wiki | |
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1906 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Force":true}') |
18 | 1907 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
1908 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1909 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1910 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1911 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1912 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1913 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1914 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1915 | |
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1916 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": true,"Force":true}') |
18 | 1917 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
1918 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1919 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1920 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1921 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1922 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1923 | |
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1924 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Force":true}') |
18 | 1925 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) |
1926 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1927 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
1928 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1929 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1930 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1931 | |
1932 | |
1933 # Test modify non-existing | |
1934 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1935 json.dumps({ | |
1936 'PatientName' : 'Jodogne', | |
1937 'Modality' : 'CT', | |
1938 }))['ID'] | |
1939 | |
1940 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
1941 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
1942 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
1943 | |
1944 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
1945 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
1946 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
1947 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
1948 | |
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1949 |
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1950 def test_incoming_jpeg(self): |
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1951 def storescu(image, acceptUnknownSopClassUid): |
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1952 if acceptUnknownSopClassUid: |
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1953 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1954 else: |
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1955 tmp = [ '-xs' ] |
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1956 |
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1957 with open(os.devnull, 'w') as FNULL: |
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1958 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1959 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1960 GetDatabasePath(image) ], |
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1961 stderr = FNULL) |
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1962 |
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1963 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1964 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1965 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1966 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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1967 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1968 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1969 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1970 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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1971 storescu('UnknownSopClassUid.dcm', True) |
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1972 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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1973 |
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1974 |
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1975 def test_storescu_jpeg(self): |
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1976 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1977 |
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1978 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 1979 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
1980 | |
1981 # This is JPEG lossless | |
1982 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
1983 | |
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1984 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1985 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1986 |
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1987 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1988 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1989 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1990 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1991 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1992 |
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1993 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1994 |
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1995 DropOrthanc(_REMOTE) |
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1996 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1997 |
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1998 |
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1999 def test_pixel_data(self): |
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2000 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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2001 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2002 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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2003 |
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2004 phenixSize = 358 * 512 * 2 |
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2005 colorSize = 1000 * 1000 * 3 |
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2006 jpegSize = 51918 |
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2007 |
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2008 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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2009 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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2010 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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2011 |
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2012 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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2013 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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2014 |
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2015 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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2016 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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2017 |
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2018 |
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2019 def test_decode_brainix(self): |
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2020 brainix = [ |
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2021 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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2022 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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2023 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2024 ] |
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2025 h = '6fb11b932d535c2be04beabd99793ff8' |
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2026 maxValue = 426.0 |
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2027 |
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2028 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2029 for i in brainix: |
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2030 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2031 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2032 |
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2033 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2034 for i in brainix: |
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2035 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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2036 |
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2037 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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|
2038 for i in brainix: |
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2039 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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2040 |
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2041 for i in brainix: |
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2042 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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2043 |
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|
2044 |
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2045 def test_decode_color(self): |
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2046 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2047 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2048 |
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2049 for i in [ imagej, color ]: |
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2050 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2051 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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2052 |
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2053 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2054 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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|
2055 |
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2056 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2057 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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|
2058 |
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diff
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|
2059 |
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|
2060 def test_decode_rf(self): |
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2061 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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|
2062 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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|
2063 |
2a29bcff60a7
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18
diff
changeset
|
2064 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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|
2065 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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changeset
|
2066 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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|
2067 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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|
2068 |
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diff
changeset
|
2069 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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diff
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|
2070 |
2a29bcff60a7
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18
diff
changeset
|
2071 |
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|
2072 def test_decode_multiframe(self): |
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|
2073 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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18
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|
2074 |
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|
2075 # Test the first frame |
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|
2076 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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18
diff
changeset
|
2077 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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diff
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|
2078 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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changeset
|
2079 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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18
diff
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|
2080 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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diff
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|
2081 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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diff
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|
2082 |
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18
diff
changeset
|
2083 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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diff
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|
2084 |
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|
2085 # Test the last frame |
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2086 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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18
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|
2087 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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|
2088 |
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18
diff
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|
2089 |
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|
2090 def test_decode_signed(self): |
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|
2091 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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|
2092 minValue = -2000 |
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|
2093 maxValue = 4042 |
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|
2094 |
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|
2095 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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|
2096 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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|
2097 |
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|
2098 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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|
2099 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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|
2100 |
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|
2101 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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|
2102 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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diff
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|
2103 |
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|
2104 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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|
2105 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2106 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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|
2107 |
2a29bcff60a7
tests of image decoding
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diff
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2108 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2109 |
2110 | |
46
85b2e36ed392
explicit GoogleCode source
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diff
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2111 def test_googlecode_issue_32(self): |
92
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2112 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope')) |
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test_findscu_encoding
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diff
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2113 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251')) |
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diff
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2114 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding')) |
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2115 |
22 | 2116 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2117 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2118 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2119 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2120 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2121 | |
92
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diff
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2122 # Replay the same test using Latin1 as default encoding: This must fail |
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test_findscu_encoding
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2123 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1')) |
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2124 |
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2125 DoDelete(_REMOTE, '/instances/%s' % f) |
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2126 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
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2127 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) |
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diff
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|
2128 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription']) |
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test_findscu_encoding
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diff
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|
2129 |
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2130 |
22 | 2131 def test_encodings(self): |
23 | 2132 # Latin-1 (ISO_IR 100) |
22 | 2133 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2134 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2135 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2136 |
2137 # Latin-2 (ISO_IR 101) | |
2138 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2139 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2140 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2141 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2142 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2143 | |
26
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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23
diff
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|
2144 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2145 def test_storescu_custom_aet(self): |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2146 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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test_storescu_custom_aet
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parents:
23
diff
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2147 # setting of the local AET during C-Store SCU (both in Lua and |
040f6ef1394a
test_storescu_custom_aet
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diff
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|
2148 # in the REST API)." |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2149 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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test_storescu_custom_aet
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diff
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|
2150 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2151 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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test_storescu_custom_aet
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parents:
23
diff
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|
2152 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2153 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2154 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2155 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2156 |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2157 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2158 'LocalAet' : 'YOP', |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2159 'Resources' : [ a['ID'], b['ID'] ] |
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parents:
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diff
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|
2160 }) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2161 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2162 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2163 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2164 |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2165 DropOrthanc(_LOCAL) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2166 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
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diff
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|
2167 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2168 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2169 'Resources' : [ c['ID'] ] |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2170 }) |
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test_storescu_custom_aet
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23
diff
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|
2171 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2172 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
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|
2173 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2174 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2175 DropOrthanc(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2176 DropOrthanc(_LOCAL) |
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test_storescu_custom_aet
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parents:
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diff
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|
2177 |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
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|
2178 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2179 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2180 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2181 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2182 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2183 WaitEmpty(_REMOTE) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2184 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2185 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2186 |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2187 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2188 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
040f6ef1394a
test_storescu_custom_aet
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parents:
23
diff
changeset
|
2189 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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parents:
23
diff
changeset
|
2190 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
040f6ef1394a
test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
23
diff
changeset
|
2191 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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diff
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|
2192 |
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diff
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|
2193 def test_resources_since_limit(self): |
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diff
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2194 # Upload 16 instances |
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|
2195 for i in range(4): |
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2196 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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|
2197 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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|
2198 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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diff
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|
2199 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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|
2200 |
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diff
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|
2201 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2202 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2203 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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|
2204 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2205 |
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2206 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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|
2207 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2208 |
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|
2209 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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|
2210 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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|
2211 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2212 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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|
2213 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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|
2214 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2215 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2216 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2217 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2218 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2219 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2220 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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|
2221 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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2222 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2223 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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2224 |
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2225 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2226 s = {} |
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2227 since = 0 |
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2228 while True: |
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2229 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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2230 if len(t) == 0: |
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|
2231 break |
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2232 |
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2233 since += len(t) |
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2234 for i in t: |
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2235 s[i] = None |
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2236 |
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2237 self.assertEqual(16, len(s)) |
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2238 for instance in DoGet(_REMOTE, '/instances'): |
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2239 self.assertTrue(instance in s) |
36 | 2240 |
2241 | |
2242 def test_create_pdf(self): | |
2243 # Upload 4 instances | |
2244 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2245 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2246 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2247 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2248 | |
2249 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2250 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2251 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2252 | |
2253 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2254 pdf = f.read() | |
2255 | |
2256 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2257 json.dumps({ | |
2258 'Tags' : { | |
2259 'PatientName' : 'Jodogne', | |
2260 'Modality' : 'CT', | |
2261 }, | |
2262 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2263 })) | |
2264 | |
2265 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2266 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2267 | |
2268 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2269 self.assertEqual(len(b), len(pdf) + 1) | |
2270 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2271 | |
2272 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2273 json.dumps({ | |
2274 'Parent' : brainixPatient, | |
2275 'Tags' : { | |
2276 'PatientName' : 'Jodogne', | |
2277 } | |
2278 }))) | |
2279 | |
2280 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2281 json.dumps({ | |
2282 'Parent' : brainixPatient, | |
2283 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2284 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2285 })) | |
2286 | |
2287 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2288 | |
2289 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2290 json.dumps({ | |
2291 'Parent' : brainixStudy, | |
2292 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2293 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2294 })) | |
2295 | |
2296 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2297 | |
2298 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2299 json.dumps({ | |
2300 'Parent' : brainixEpi, | |
37 | 2301 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2302 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2303 })) | |
2304 | |
2305 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2306 | |
2307 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2308 self.assertEqual(len(b), len(pdf)) | |
2309 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2310 | |
2311 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2312 |
2313 | |
2314 def test_create_series(self): | |
2315 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2316 json.dumps({ | |
2317 'Tags' : { | |
40 | 2318 'SpecificCharacterSet' : 'ISO_IR 100', |
2319 'PatientName' : 'Sébastien Jodogne', | |
38 | 2320 'Modality' : 'CT', |
2321 }, | |
2322 'Content' : [ | |
40 | 2323 { |
2324 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2325 'Tags' : { 'ImageComments' : 'Tutu' } | |
2326 }, | |
38 | 2327 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2328 ] | |
2329 })) | |
2330 | |
2331 s = DoGet(_REMOTE, i['Path']) | |
2332 self.assertEqual('Series', s['Type']) | |
2333 self.assertEqual(s['ID'], i['ID']) | |
2334 self.assertEqual(2, len(s['Instances'])) | |
39 | 2335 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2336 self.assertEqual('Complete', s['Status']) | |
40 | 2337 |
2338 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2339 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2340 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2341 if 'ImageComments' in a: | |
2342 self.assertEqual('Tutu', a['ImageComments']) | |
2343 else: | |
2344 self.assertEqual('Tutu', b['ImageComments']) | |
2345 | |
2346 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2347 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2348 'Sébastien Jodogne') | |
47 | 2349 |
2350 | |
2351 def test_create_binary(self): | |
2352 binary = ''.join(map(chr, range(256))) | |
2353 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2354 tags = { | |
2355 'PatientName' : 'Jodogne', | |
2356 '8899-8899' : encoded | |
2357 } | |
2358 | |
2359 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2360 json.dumps({ | |
2361 'Tags' : tags | |
2362 })) | |
2363 | |
2364 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2365 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2366 | |
2367 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2368 json.dumps({ | |
2369 'InterpretBinaryTags' : False, | |
2370 'Tags' : tags | |
2371 })) | |
2372 | |
2373 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2374 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
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2375 |
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2376 |
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2377 def test_patient_ids_collision(self): |
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2378 # Upload 3 instances from 3 different studies, but with the |
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|
2379 # same PatientID |
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2380 for i in range(3): |
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2381 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
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2382 |
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2383 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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2384 'Query' : { 'PatientName' : '*' }}) |
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2385 self.assertEqual(1, len(a)) |
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2386 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
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2387 |
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|
2388 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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2389 'CaseSensitive' : True, |
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2390 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
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2391 self.assertEqual(2, len(a)) |
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|
2392 |
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2393 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
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2394 'CaseSensitive' : False, |
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2395 'Query' : { 'PatientName' : 'Foo' }}) |
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2396 self.assertEqual(1, len(a)) |
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2397 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
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2398 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
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2399 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
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2400 |
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|
2401 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
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2402 'Query' : { 'PatientName' : '*' }}) |
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2403 self.assertEqual(3, len(a)) |
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2404 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
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2405 self.assertTrue('FOO^SERIES' in d) |
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2406 self.assertTrue('HELLO^SERIES' in d) |
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2407 self.assertTrue('WORLD^SERIES' in d) |
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2408 |
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2409 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
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2410 self.assertEqual(1, len(set(d))) |
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2411 self.assertEqual('COMMON', d[0]) |
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2412 |
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2413 for i in a: |
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2414 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
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2415 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
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2416 self.assertEqual('%s^SERIES' % p, d) |
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2417 |
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2418 |
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2419 def test_bitbucket_issue_4(self): |
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2420 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
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2421 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
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2422 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
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2423 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
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2424 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
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2425 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
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2426 |
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2427 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2428 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2429 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2430 p = DoGet(_REMOTE, '/patients') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2431 self.assertEqual(2, len(p)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2432 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2433 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2434 self.assertEqual(3, len(i1)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2435 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2436 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2437 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2438 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2439 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2440 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2441 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2442 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2443 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2444 json.dumps({ |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2445 'Tags' : { |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2446 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2447 'PatientName': 'Jodogne^', |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2448 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2449 } |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2450 }))['ID'] |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2451 |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2452 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2453 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2454 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2455 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2456 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
49
diff
changeset
|
2457 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2458 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2459 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2460 def test_modify_sequence(self): |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2461 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2462 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2463 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2464 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2465 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2466 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2467 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2468 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2469 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2470 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2471 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2472 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2473 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2474 |
52 | 2475 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2476 | |
2477 | |
2478 def test_compression(self): | |
2479 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2480 | |
2481 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2482 | |
2483 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2484 # uncompress the data before running the test | |
2485 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2486 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2487 | |
2488 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2489 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2490 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2491 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2492 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2493 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2494 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2495 | |
2496 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2497 self.assertTrue('compress' in ops) | |
2498 self.assertTrue('uncompress' in ops) | |
2499 self.assertTrue('is-compressed' in ops) | |
2500 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2501 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2502 | |
2503 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2504 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2505 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2506 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2507 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2508 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2509 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2510 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2511 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2512 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2513 | |
2514 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2515 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2516 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2517 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2518 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2519 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2520 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2521 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2522 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2523 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2524 |
2525 | |
2526 def test_ordered_slices(self): | |
2527 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2528 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2529 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2530 self.assertEqual('Sequence', o['Type']) | |
2531 self.assertEqual(1, len(o['Dicom'])) | |
2532 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2533 self.assertEqual(76, len(o['Slices'])) | |
2534 for j in range(76): | |
2535 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2536 | |
68 | 2537 self.assertEqual(1, len(o['SlicesShort'])) |
2538 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2539 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2540 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2541 | |
53 | 2542 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2543 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2544 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2545 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2546 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2547 | |
2548 self.assertEqual('Volume', o['Type']) | |
2549 self.assertEqual(3, len(o['Dicom'])) | |
2550 self.assertEqual(3, len(o['Slices'])) | |
2551 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2552 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2553 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2554 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2555 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2556 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2557 | |
68 | 2558 self.assertEqual(3, len(o['SlicesShort'])) |
2559 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2560 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2561 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2562 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2563 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2564 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2565 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2566 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2567 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2568 | |
53 | 2569 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2570 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2571 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2572 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2573 | |
2574 self.assertEqual('Sequence', o['Type']) | |
2575 self.assertEqual(2, len(o['Dicom'])) | |
2576 self.assertEqual(2, len(o['Slices'])) | |
2577 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2578 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2579 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2580 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2581 |
68 | 2582 self.assertEqual(2, len(o['SlicesShort'])) |
2583 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2584 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2585 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2586 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2587 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2588 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2589 | |
2590 | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2591 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2592 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2593 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2594 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2595 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2596 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2597 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2598 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2599 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2600 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2601 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2602 |
55 | 2603 |
2604 def test_dicom_to_json(self): | |
2605 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2606 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2607 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2608 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2609 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2610 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
123 | 2611 # Tags for compatibility with DCMTK 3.6.0 |
2612 'RETIRED_OtherPatientIDs', | |
2613 'OtherPatientIDs', | |
2614 'ACR_NEMA_2C_VariablePixelDataGroupLength', | |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2615 ])) |
55 | 2616 |
2617 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2618 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2619 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2620 ])) |
55 | 2621 |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2622 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2623 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2624 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2625 ])) |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2626 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2627 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2628 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2629 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2630 aa = json.dumps(a).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2631 tt = json.dumps(t).replace('2e+022', '2e+22') |
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2632 self.assertEqual(aa, tt) |
57 | 2633 |
2634 | |
2635 def test_batch_archive(self): | |
2636 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2637 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2638 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2639 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2640 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2641 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2642 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2643 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2644 | |
2645 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2646 z = zipfile.ZipFile(StringIO(s), "r") | |
2647 self.assertEqual(0, len(z.namelist())) | |
2648 | |
2649 # One patient | |
2650 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2651 z = zipfile.ZipFile(StringIO(s), "r") | |
2652 self.assertEqual(4, len(z.namelist())) | |
2653 | |
2654 # One patient + twice its study + one series from other patient | |
2655 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2656 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2657 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2658 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2659 ]) | |
2660 z = zipfile.ZipFile(StringIO(s), "r") | |
2661 self.assertEqual(6, len(z.namelist())) | |
2662 | |
2663 # One patient + one series + one instance | |
2664 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2665 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2666 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2667 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2668 ]) | |
2669 z = zipfile.ZipFile(StringIO(s), "r") | |
2670 self.assertEqual(7, len(z.namelist())) | |
59
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2671 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2672 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2673 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2674 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2675 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2676 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2677 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2678 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2679 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2680 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2681 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2682 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2683 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2684 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2685 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2686 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2687 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2688 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2689 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2690 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2691 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2692 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2693 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2694 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2695 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2696 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2697 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2698 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2699 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2700 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2701 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2702 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2703 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2704 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2705 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2706 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2707 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2708 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2709 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2710 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2711 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2712 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2713 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2714 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2715 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2716 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2717 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2718 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2719 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2720 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2721 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2722 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2723 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2724 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2725 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2726 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2727 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2728 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2729 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2730 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2731 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2732 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2733 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2734 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2735 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2736 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2737 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2738 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2739 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2740 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2741 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2742 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2743 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2744 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2745 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2746 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2747 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2748 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2749 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2750 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
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2751 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
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2752 |
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2753 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
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2754 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
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|
2755 self.assertEqual(1, len(s)) |
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|
2756 self.assertTrue('1 ' in s) |
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|
2757 |
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|
2758 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
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2759 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
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|
2760 self.assertEqual(1, len(s)) |
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|
2761 self.assertTrue('2 ' in s) |
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|
2762 |
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|
2763 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
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|
2764 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
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|
2765 self.assertEqual(1, len(s)) |
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|
2766 self.assertTrue('3 ' in s) |
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|
2767 |
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2768 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
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|
2769 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
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|
2770 self.assertEqual(1, len(s)) |
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changeset
|
2771 self.assertTrue('2 ' in s) |
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|
2772 |
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2773 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
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2774 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
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|
2775 self.assertEqual(1, len(s)) |
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|
2776 self.assertTrue('3 ' in s) |
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|
2777 |
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diff
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|
2778 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
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2779 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
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|
2780 self.assertEqual(2, len(s)) |
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changeset
|
2781 self.assertTrue('1 ' in s) |
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changeset
|
2782 self.assertTrue('2 ' in s) |
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|
2783 |
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2784 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
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|
2785 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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|
2786 self.assertEqual(1, len(s)) |
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2787 t = map(lambda x: x.strip(), s[0].split('\\')) |
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2788 self.assertTrue('PT' in t) |
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changeset
|
2789 self.assertTrue('CT' in t) |
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2790 |
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|
2791 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
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2792 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
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2793 self.assertEqual(1, len(s)) |
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2794 t = map(lambda x: x.strip(), s[0].split('\\')) |
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2795 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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2796 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
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2797 |
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2798 |
78
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diff
changeset
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2799 def test_decode_transfer_syntax(self): |
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2800 def Check(t, md5): |
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2801 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
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2802 |
89
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test TransferSyntax metadata
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diff
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2803 if t != '1.2.840.10008.1.2': # This file has no meta header |
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2804 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i) |
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2805 self.assertEqual(t, transferSyntax) |
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2806 |
78
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2807 if md5 == None: |
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2808 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
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|
2809 else: |
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diff
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|
2810 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
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2811 self.assertEqual(m, md5) |
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diff
changeset
|
2812 |
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diff
changeset
|
2813 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
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|
2814 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
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|
2815 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
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diff
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|
2816 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
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diff
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|
2817 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
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diff
changeset
|
2818 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
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diff
changeset
|
2819 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
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|
2820 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
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|
2821 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
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diff
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|
2822 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
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|
2823 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
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diff
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|
2824 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
79 | 2825 |
2826 | |
2827 def test_raw_frame(self): | |
2828 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
2829 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2830 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2831 self.assertEqual(512 * 512 * 2, len(a)) | |
2832 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
2833 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
2834 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
2835 | |
2836 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2837 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2838 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
2839 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
2840 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
2841 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2842 self.assertEqual("L", im.mode) | |
2843 self.assertEqual(512, im.size[0]) | |
2844 self.assertEqual(512, im.size[1]) | |
2845 | |
2846 # Test an image with 2 JPEG frames spread over multiple fragments | |
2847 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
2848 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2849 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2850 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
2851 self.assertEqual(69214, len(a)) | |
2852 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
2853 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
2854 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2855 self.assertEqual("RGB", im.mode) | |
2856 self.assertEqual(512, im.size[0]) | |
2857 self.assertEqual(512, im.size[1]) | |
2858 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
2859 self.assertEqual("RGB", im.mode) | |
2860 self.assertEqual(512, im.size[0]) | |
2861 self.assertEqual(512, im.size[1]) | |
81 | 2862 |
2863 | |
2864 | |
2865 def test_rest_movescu(self): | |
2866 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2867 | |
2868 # Upload 4 instances | |
2869 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2870 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2871 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2872 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2873 | |
2874 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2875 for p in DoGet(_REMOTE, '/patients'): | |
2876 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
2877 DoDelete(_REMOTE, '/patients/%s' % p) | |
2878 | |
2879 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2880 | |
2881 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
2882 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
2883 'Resources' : [ | |
2884 { | |
2885 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2886 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
2887 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
2888 } | |
2889 ]}) | |
2890 | |
2891 # Upload series Brainix/Flair/* | |
2892 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2893 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2894 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
2895 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2896 | |
2897 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
2898 'Resources' : [ | |
2899 { | |
2900 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2901 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
2902 } | |
2903 ]}) | |
2904 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2905 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2906 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
2907 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
2908 | |
2909 # Upload series Brainix/Epi/* | |
2910 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
2911 'Resources' : [ | |
2912 { | |
2913 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2914 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
2915 } | |
2916 ]}) | |
2917 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2918 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2919 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2920 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
2921 | |
2922 # Upload study Knee/* | |
2923 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
2924 'Resources' : [ | |
2925 { | |
2926 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
2927 } | |
2928 ]}) | |
2929 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2930 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
2931 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
2932 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
2933 | |
2934 # Reset | |
2935 for p in DoGet(_REMOTE, '/patients'): | |
2936 DoDelete(_REMOTE, '/patients/%s' % p) | |
2937 | |
2938 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2939 | |
2940 | |
2941 # Upload all at once | |
2942 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
2943 'Resources' : [ | |
2944 { | |
2945 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
2946 }, | |
2947 { | |
2948 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2949 } | |
2950 ]}) | |
2951 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2952 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
2953 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
2954 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
2955 | |
86
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2956 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2957 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2958 def test_reconstruct_json(self): |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2959 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2960 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2961 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2962 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2963 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2964 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2965 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2966 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2967 # Cannot delete the "DICOM" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2968 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2969 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2970 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2971 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2972 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2973 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2974 # Only the "DICOM" attachment subsists |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2975 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2976 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2977 # Cannot manually reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2978 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2979 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2980 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2981 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2982 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2983 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2984 |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2985 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2986 self.assertEqual(str(first), str(second)) |
0401ef51f5c1
test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
83
diff
changeset
|
2987 self.assertEqual(str(first), str(third)) |
87
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2988 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2989 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2990 def test_reconstruct_json2(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2991 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2992 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2993 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2994 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2995 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2996 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2997 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2998 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
2999 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3000 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3001 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3002 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain') |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3003 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3004 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3005 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3006 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3007 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3008 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3009 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3010 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3011 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b))) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3012 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3013 |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3014 def test_private_tags(self): |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3015 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3016 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3017 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3018 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename']) |
4b24faec842b
test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
86
diff
changeset
|
3019 |
92
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3020 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3021 def test_findscu_encoding(self): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3022 # Check out ../Database/Encodings/Generate.sh |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3023 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ' |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3024 ENCODINGS = { |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3025 'Arabic' : [ 'ISO_IR 127' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3026 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3027 'Cyrillic' : [ 'ISO_IR 144' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3028 'Greek' : [ 'ISO_IR 126' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3029 'Hebrew' : [ 'ISO_IR 138' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3030 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3031 'Latin1' : [ 'ISO_IR 100' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3032 'Latin2' : [ 'ISO_IR 101' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3033 'Latin3' : [ 'ISO_IR 109' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3034 'Latin4' : [ 'ISO_IR 110' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3035 'Latin5' : [ 'ISO_IR 148' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3036 'Thai' : [ 'ISO_IR 166', 'tis-620' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3037 'Utf8' : [ 'ISO_IR 192' ], |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3038 } |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3039 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3040 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3041 if len(ENCODINGS[name]) == 1: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3042 ENCODINGS[name].append(name.lower()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3043 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3044 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3045 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3046 for name in ENCODINGS.iterkeys(): |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3047 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3048 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3049 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3050 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3051 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3052 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3053 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3054 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3055 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3056 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3057 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3058 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3059 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3060 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3061 expected = TEST.encode(ENCODINGS[name][1], 'ignore') |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3062 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3063 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3064 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3065 #for master in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3066 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3067 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3068 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding')) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3069 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3070 for name in ENCODINGS: |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3071 DropOrthanc(_REMOTE) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3072 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3073 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3074 i = CallFindScu([ '-k', '0008,0052=STUDY', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3075 '-k', 'PatientID', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3076 '-k', 'SpecificCharacterSet', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3077 '-k', 'PatientName' ]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3078 i = i.decode(ENCODINGS[master][1]) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3079 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3080 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3081 self.assertEqual(1, len(characterSet)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3082 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3083 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3084 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3085 self.assertEqual(1, len(patientId)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3086 self.assertEqual(ENCODINGS[name][1], patientId[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3087 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3088 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3089 self.assertEqual(1, len(patientName)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3090 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3091 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3092 expected = TEST.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3093 tmp = ENCODINGS[master][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3094 expected = expected.encode(tmp, 'ignore').decode(tmp) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3095 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3096 self.assertEqual(expected, patientName[0].strip()) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3097 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3098 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3099 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3100 'Level' : 'Study', |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3101 'Query' : { }}) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3102 self.assertEqual(1, len(a)) |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3103 |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3104 tmp = ENCODINGS[name][1] |
dbcbffb889da
test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
89
diff
changeset
|
3105 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"]) |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3106 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3107 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3108 def test_reconstruct(self): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3109 def CompareMainDicomTag(expected, instance, level, tag): |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3110 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3111 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3112 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3113 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3114 studies = DoGet(_REMOTE, '/studies/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3115 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3116 self.assertEqual(1, len(studies)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3117 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3118 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3119 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3120 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3121 "Replace" : { |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3122 "StudyDescription" : "hello", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3123 "SeriesDescription" : "world", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3124 "SOPClassUID" : "test", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3125 "SOPInstanceUID" : "myid", |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3126 }, |
119 | 3127 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ], |
3128 "Force" : True | |
96
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3129 }) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3130 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3131 instances = DoGet(_REMOTE, '/instances/') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3132 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3133 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3134 self.assertEqual(1, len(DoGet(_REMOTE, '/series/'))) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3135 self.assertEqual(2, len(instances)) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3136 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3137 b = instances[0] if instances[1] == a else instances[1] |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3138 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3139 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3140 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3141 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3142 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3143 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3144 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip()) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3145 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3146 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {}) |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3147 |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3148 CompareMainDicomTag('hello', a, 'study', 'StudyDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3149 CompareMainDicomTag('world', a, 'series', 'SeriesDescription') |
272d1229cb49
test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
95
diff
changeset
|
3150 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID') |
102 | 3151 |
104 | 3152 def test_httpClient_lua(self): |
3153 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f: | |
102 | 3154 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') |
3155 | |
3156 self.assertIn('OK', result) | |
107
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3157 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3158 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3159 def test_bitbucket_issue_44(self): |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3160 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3161 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3162 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3163 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3164 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3165 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3166 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3167 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3168 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm') |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3169 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3170 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3171 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
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104
diff
changeset
|
3172 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab' |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3173 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20' |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3174 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3175 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3176 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3177 self.assertEqual("L", im.mode) |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3178 self.assertEqual(2010, im.size[0]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3179 self.assertEqual(2446, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3180 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3181 # This is the chest image, with MONOCHROME1. Raw background is |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3182 # white (255), should be rendered as black (0) => invert |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3183 if i == monochrome1_jpeg: |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3184 # Add some tolerance because of JPEG destructive compression |
fddb35f7289d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3185 self.assertGreater(10, im.getpixel((0,0))) |
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test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3186 else: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3187 self.assertEqual(0, im.getpixel((0,0))) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3188 |
fddb35f7289d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3189 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3190 self.assertEqual("L", im.mode) |
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parents:
104
diff
changeset
|
3191 self.assertEqual(1572, im.size[0]) |
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parents:
104
diff
changeset
|
3192 self.assertEqual(2010, im.size[1]) |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3193 |
fddb35f7289d
test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3194 # This is the key image, with MONOCHROME2. Raw background is |
fddb35f7289d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
104
diff
changeset
|
3195 # white (255), should be rendered as white (255) |
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parents:
104
diff
changeset
|
3196 self.assertEqual(255, im.getpixel((0,0))) |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3197 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3198 |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3199 def test_bitbucket_issue_42(self): |
7005cdeeb704
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107
diff
changeset
|
3200 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file |
123 | 3201 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots and DCMTK 3.6.2 |
111
7005cdeeb704
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3202 UploadInstance(_REMOTE, 'Issue42.dcm')['ID'] |
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107
diff
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|
3203 modified = DoPost(_REMOTE, |
7005cdeeb704
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107
diff
changeset
|
3204 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify', |
119 | 3205 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"},"Force":true}', |
111
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3206 'application/json') |
7005cdeeb704
test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
107
diff
changeset
|
3207 self.assertTrue('PatientID' in modified) |
113
3e5934363e76
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parents:
112
diff
changeset
|
3208 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3209 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3210 def test_rest_find_limit(self): |
3e5934363e76
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parents:
112
diff
changeset
|
3211 # Check the "Since" and "Limit" parameters in URI "/tools/find" |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3212 # Related to issue 53: https://bitbucket.org/sjodogne/orthanc/issues/53 |
111
7005cdeeb704
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parents:
107
diff
changeset
|
3213 |
113
3e5934363e76
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parents:
112
diff
changeset
|
3214 # Upload 6 instances |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3215 brainix = [] |
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3216 knee = [] |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3217 for i in range(2): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3218 brainix.append(UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3219 brainix.append(UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3220 knee.append(UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) ['ID']) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3221 |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3222 # Check using BRAINIX |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3223 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3224 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3225 'Limit' : 10 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3226 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3227 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3228 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3229 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3230 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3231 self.assertEqual(4, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3232 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3233 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3234 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3235 'Since' : 2, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3236 'Limit' : 4 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3237 self.assertEqual(2, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3238 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3239 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3240 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3241 'Limit' : 3 }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3242 self.assertEqual(3, len(a)) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3243 |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3244 b = [] |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3245 for i in range(4): |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3246 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3247 'Query' : { 'PatientName' : 'B*' }, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3248 'Limit' : 1, |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3249 'Since' : i }) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
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112
diff
changeset
|
3250 self.assertEqual(1, len(a)) |
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112
diff
changeset
|
3251 b.append(a[0]) |
3e5934363e76
test_rest_find_limitµ
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
112
diff
changeset
|
3252 |
3e5934363e76
test_rest_find_limitµ
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parents:
112
diff
changeset
|
3253 # Check whether the two sets are equal through symmetric difference |
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parents:
112
diff
changeset
|
3254 self.assertEqual(0, len(set(b) ^ set(brainix))) |
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test_rest_find_limitµ
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112
diff
changeset
|
3255 |
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3256 # Check using KNEE |
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112
diff
changeset
|
3257 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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112
diff
changeset
|
3258 'Query' : { 'PatientName' : 'K*' }, |
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112
diff
changeset
|
3259 'Limit' : 10 }) |
3e5934363e76
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diff
changeset
|
3260 self.assertEqual(2, len(a)) |
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112
diff
changeset
|
3261 |
3e5934363e76
test_rest_find_limitµ
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112
diff
changeset
|
3262 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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diff
changeset
|
3263 'Query' : { 'PatientName' : 'K*' }, |
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diff
changeset
|
3264 'Limit' : 2 }) |
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diff
changeset
|
3265 self.assertEqual(2, len(a)) |
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112
diff
changeset
|
3266 |
3e5934363e76
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diff
changeset
|
3267 b = [] |
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diff
changeset
|
3268 for i in range(2): |
3e5934363e76
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diff
changeset
|
3269 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', |
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diff
changeset
|
3270 'Query' : { 'PatientName' : 'K*' }, |
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diff
changeset
|
3271 'Limit' : 1, |
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diff
changeset
|
3272 'Since' : i }) |
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diff
changeset
|
3273 self.assertEqual(1, len(a)) |
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diff
changeset
|
3274 b.append(a[0]) |
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112
diff
changeset
|
3275 |
3e5934363e76
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112
diff
changeset
|
3276 self.assertEqual(0, len(set(b) ^ set(knee))) |
115
45ebfab035b7
test_bitbucket_issue_46
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3277 |
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3278 |
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3279 def test_bitbucket_issue_46(self): |
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3280 # "PHI remaining after anonymization" |
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3281 # https://bitbucket.org/sjodogne/orthanc/issues/46 |
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|
3282 |
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3283 def GetAnonymizedTags(study, version): |
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3284 anonymized = DoPost(_REMOTE, '/studies/%s/anonymize' % study, |
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3285 { 'DicomVersion' : version }, |
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3286 'application/json') ['ID'] |
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3287 a = DoGet(_REMOTE, '/studies/%s/instances' % anonymized) |
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3288 self.assertEqual(1, len(a)) |
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|
3289 |
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|
3290 instance = a[0]['ID'] |
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|
3291 |
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3292 return (instance, DoGet(_REMOTE, '/instances/%s/tags' % instance)) |
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|
3293 |
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3294 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm') |
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3295 origStudy = '6068a14b-d4df27af-9ec22145-538772d8-74f228ff' |
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|
3296 |
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3297 # Add the 0032,1033 (Requesting Service) and the 0010,1060 |
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3298 # (Patient's Mother's Birth Name) tags |
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3299 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, |
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3300 '{"Replace":{"0010,1060":"OSIMIS","0032,1033":"MOTHER"}}', |
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3301 'application/json')['ID'] |
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|
3302 |
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3303 # Use Table E.1-1 from PS 3.15-2008 |
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3304 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3305 (instance, tags) = GetAnonymizedTags(newStudy, "2008") |
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3306 self.assertTrue('0032,1033' in tags) |
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3307 self.assertTrue('0010,1060' in tags) |
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|
3308 |
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3309 # Use Table E.1-1 from PS 3.15-2011 (only if Orthanc >= 1.2.1) |
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3310 # https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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3311 (instance, tags) = GetAnonymizedTags(newStudy, "2017c") |
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3312 self.assertFalse('0032,1033' in tags) |
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3313 self.assertFalse('0010,1060' in tags) |
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|
3314 |
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3315 t = {} |
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3316 for (key, value) in tags.iteritems(): |
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3317 t[value['Name']] = value['Value'] |
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|
3318 |
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3319 self.assertEqual('', t['StudyDate']) # Type 1 tag => cleared |
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3320 self.assertEqual('', t['StudyTime']) # Type 1 tag => cleared |
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3321 self.assertEqual('', t['PatientSex']) # Type 1 tag => cleared |
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3322 self.assertFalse('SeriesDate' in t) # Type 3 tag => null |
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3323 self.assertFalse('SeriesTime' in t) # Type 3 tag => null |
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|
3324 |
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test_bitbucket_issue_46
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|
3325 with tempfile.NamedTemporaryFile(delete = True) as f: |
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3326 # Run "dciodvfy" on the anonymized file to be sure it is still valid |
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3327 f.write(DoGet(_REMOTE, '/instances/%s/file' % instance)) |
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|
3328 f.flush() |
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|
3329 subprocess.check_output([ FindExecutable('dciodvfy'), f.name ], |
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|
3330 stderr = subprocess.STDOUT).split('\n') |
118
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|
3331 |
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diff
changeset
|
3332 |
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|
3333 def test_bitbucket_issue_55(self): |
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3334 def Run(modify, query): |
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3335 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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|
3336 |
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|
3337 operation = 'modify' if modify else 'anonymize' |
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|
3338 |
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|
3339 self.assertRaises(Exception, lambda: DoPost( |
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3340 _REMOTE, '/studies/%s/%s' % (study, operation), query)) |
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|
3341 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_bitbucket_issue_55
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|
3342 |
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diff
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|
3343 query["Force"] = True |
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|
3344 a = DoPost(_REMOTE, '/studies/%s/%s' % (study, operation), query)['Path'] |
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|
3345 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) |
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|
3346 DoDelete(_REMOTE, a) |
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|
3347 |
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|
3348 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) |
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test_bitbucket_issue_55
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|
3349 |
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|
3350 UploadInstance(_REMOTE, 'DummyCT.dcm') |
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|
3351 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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|
3352 |
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|
3353 Run(True, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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|
3354 Run(True, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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|
3355 Run(True, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3356 |
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|
3357 Run(False, { "Keep" : [ "StudyInstanceUID" ]}) |
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|
3358 Run(False, { "Keep" : [ "SeriesInstanceUID" ]}) |
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|
3359 Run(False, { "Keep" : [ "SOPInstanceUID" ]}) |
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|
3360 |
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|
3361 Run(False, { "Replace" : { "StudyInstanceUID" : "world" } }) |
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|
3362 Run(False, { "Replace" : { "SeriesInstanceUID" : "world" } }) |
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|
3363 Run(False, { "Replace" : { "SOPInstanceUID" : "world" } }) |
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|
3364 |
120
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|
3365 |
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|
3366 def test_bitbucket_issue_56(self): |
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3367 # Case-insensitive matching over accents. This test assumes |
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|
3368 # that the "CaseSensitivePN" configuration option of Orthanc |
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|
3369 # is set to "false" (default value). |
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|
3370 # https://bitbucket.org/sjodogne/orthanc/issues/56 |
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|
3371 |
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|
3372 def Check(name, expected, expectedSensitive): |
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|
3373 a = CallFindScu([ '-k', '0008,0005=ISO_IR 192', # Use UTF-8 |
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|
3374 '-k', '0008,0052=PATIENT', |
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|
3375 '-k', 'PatientName=%s' % name ]) |
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|
3376 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', a) |
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|
3377 self.assertEqual(expected, len(patientNames)) |
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|
3378 |
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|
3379 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3380 'CaseSensitive' : False, |
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|
3381 'Query' : { 'PatientName' : name }}) |
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|
3382 self.assertEqual(expected, len(a)) |
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|
3383 |
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|
3384 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
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|
3385 'CaseSensitive' : True, |
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changeset
|
3386 'Query' : { 'PatientName' : name }}) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3387 self.assertEqual(expectedSensitive, len(a)) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3388 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3389 UploadInstance(_REMOTE, 'Encodings/Lena-latin1.dcm') |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3390 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3391 # WildcardConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3392 Check('TeSt*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3393 Check('TeSt-a*', 0, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3394 Check('TeSt-É*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3395 Check('TeSt-é*', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3396 Check('Test-é*', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3397 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3398 # ListConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3399 Check('Test-éüäöò\\nope', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3400 Check('Test-ÉÜÄÖÒ\\nope', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3401 |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3402 # ValueConstraint |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3403 Check('Test-éüäöò', 1, 1) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3404 Check('Test-ÉÜÄÖÒ', 1, 0) |
fce08afe6b2d
test_bitbucket_issue_56
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
119
diff
changeset
|
3405 |
125 | 3406 |
3407 def test_gbk_alias(self): | |
3408 # https://groups.google.com/d/msg/orthanc-users/WMM8LMbjpUc/02-1f_yFCgAJ | |
3409 # This test fails on Orthanc <= 1.3.0 | |
3410 i = UploadInstance(_REMOTE, '2017-09-19-GBK-Tumashu.dcm')['ID'] | |
3411 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3412 self.assertEqual(tags['PatientName'], u'徐浩凯') | |
3413 self.assertEqual(tags['InstitutionName'], u'灌云县疾病预防控制中心') | |
126 | 3414 |
3415 | |
3416 def test_long_tag(self): | |
3417 i = UploadInstance(_REMOTE, 'DummyCTWithLongTag.dcm')['ID'] | |
3418 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
3419 | |
3420 tags = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
3421 self.assertTrue('0018,1020' in tags) | |
3422 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3423 self.assertEqual('TooLong', tags['0018,1020']['Type']) | |
3424 self.assertEqual(None, tags['0018,1020']['Value']) | |
3425 | |
3426 tags = DoGet(_REMOTE, '/instances/%s/tags?ignore-length=0018-1020' % i) | |
3427 self.assertTrue('0018,1020' in tags) | |
3428 self.assertEqual('SoftwareVersions', tags['0018,1020']['Name']) | |
3429 self.assertEqual('String', tags['0018,1020']['Type']) | |
3430 self.assertTrue(tags['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3431 | |
3432 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) | |
3433 self.assertTrue('SoftwareVersions' in tags) | |
3434 self.assertEqual(None, tags['SoftwareVersions']) | |
3435 self.assertTrue('HeartRate' in tags) | |
3436 self.assertEqual(474, int(tags['HeartRate'])) | |
3437 | |
3438 tags = DoGet(_REMOTE, '/instances/%s/simplified-tags' % i) | |
3439 self.assertTrue('SoftwareVersions' in tags) | |
3440 self.assertEqual(None, tags['SoftwareVersions']) | |
3441 | |
3442 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=0018-1020' % i) | |
3443 self.assertTrue('SoftwareVersions' in tags) | |
3444 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3445 | |
3446 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify&ignore-length=SoftwareVersions' % i) | |
3447 self.assertTrue('SoftwareVersions' in tags) | |
3448 self.assertTrue(tags['SoftwareVersions'].startswith('Lorem ipsum dolor sit amet')) | |
3449 | |
3450 tags = DoGet(_REMOTE, '/series/%s/instances-tags' % series) | |
3451 self.assertEqual(1, len(tags)) | |
3452 self.assertTrue(i in tags.keys()) | |
3453 self.assertTrue('0018,1020' in tags[i]) | |
3454 self.assertEqual('TooLong', tags[i]['0018,1020']['Type']) | |
3455 | |
3456 tags = DoGet(_REMOTE, '/series/%s/instances-tags?ignore-length=SoftwareVersions' % series) | |
3457 self.assertEqual(1, len(tags)) | |
3458 self.assertTrue(i in tags.keys()) | |
3459 self.assertTrue('0018,1020' in tags[i]) | |
3460 self.assertEqual('String', tags[i]['0018,1020']['Type']) | |
3461 self.assertTrue(tags[i]['0018,1020']['Value'].startswith('Lorem ipsum dolor sit amet')) | |
3462 | |
127
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3463 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3464 def test_extended_media(self): |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3465 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3466 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3467 z = GetArchive(_REMOTE, '/patients/%s/media?extended' % DoGet(_REMOTE, '/patients')[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3468 self.assertEqual(2, len(z.namelist())) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3469 self.assertTrue('IMAGES/IM0' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3470 self.assertTrue('DICOMDIR' in z.namelist()) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3471 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3472 try: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3473 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3474 except: |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3475 # The file does not exist |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3476 pass |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3477 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3478 z.extract('DICOMDIR', '/tmp') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3479 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3480 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3481 self.assertEqual(5, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3482 self.assertTrue(a[0].startswith('Warning')) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3483 self.assertEqual('BasicDirectory', a[1]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3484 self.assertTrue('not present in standard DICOM IOD' in a[2]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3485 self.assertTrue('not present in standard DICOM IOD' in a[3]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3486 self.assertEqual('', a[4]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3487 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3488 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3489 stderr = subprocess.STDOUT).split('\n') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3490 self.assertEqual(1, len(a)) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3491 self.assertEqual('', a[0]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3492 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3493 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3494 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3495 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3496 # Check the presence of the series description (extended tag) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3497 self.assertTrue(re.search('T1W_aTSE', a) != None) |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3498 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3499 os.remove('/tmp/DICOMDIR') |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3500 |
1eea4d3a1ba9
test_extended_media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
126
diff
changeset
|
3501 |