annotate Tests/Tests.py @ 116:4a196ebc7a4f

updated tests for issue #31
author amazy
date Thu, 13 Jul 2017 12:39:26 +0200
parents 9d09f6f21b60
children d87bf4fbbf83
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1 #!/usr/bin/env python
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2 # -*- coding: utf-8 -*-
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4
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5 # Orthanc - A Lightweight, RESTful DICOM Store
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6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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7 # Department, University Hospital of Liege, Belgium
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8 # Copyright (C) 2017 Osimis, Belgium
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9 #
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10 # This program is free software: you can redistribute it and/or
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11 # modify it under the terms of the GNU General Public License as
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12 # published by the Free Software Foundation, either version 3 of the
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13 # License, or (at your option) any later version.
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14 #
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15 # This program is distributed in the hope that it will be useful, but
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 # General Public License for more details.
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19 #
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20 # You should have received a copy of the GNU General Public License
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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24 import tempfile
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25 import unittest
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26 import base64
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28 from PIL import ImageChops
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29 from Toolbox import *
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30 from xml.dom import minidom
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31
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32 _LOCAL = None
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33 _REMOTE = None
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35
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36 def SetOrthancParameters(local, remote):
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37 global _LOCAL, _REMOTE
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38 _LOCAL = local
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39 _REMOTE = remote
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41
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42 def ExtractDicomTags(rawDicom, tags):
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43 with tempfile.NamedTemporaryFile(delete = True) as f:
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44 f.write(rawDicom)
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45 f.flush()
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46 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ])
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48 result = []
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49 for tag in tags:
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50 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data)
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51 if match == None:
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52 result.append('')
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53 else:
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54 result.append(match.group(1))
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55
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56 return result
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57
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58
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59 def InstallLuaScript(path):
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60 with open(GetDatabasePath(path), 'r') as f:
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61 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua')
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64 def UninstallLuaCallbacks():
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65 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua')
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66 InstallLuaScript('Lua/TransferSyntaxEnable.lua')
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68
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69 def CompareLists(a, b):
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70 if len(a) != len(b):
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71 return False
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72
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73 for i in range(len(a)):
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74 d = a[i] - b[i]
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75 if abs(d) >= 0.51: # Add some tolerance for rounding errors
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76 return False
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77
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78 return True
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80
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81 def CompareTags(a, b, tagsToIgnore):
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82 for i in tagsToIgnore:
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83 if i in a:
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84 del a[i]
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85 if i in b:
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86 del b[i]
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87
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88 return a == b
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91 def CallFindScu(args):
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92 p = subprocess.Popen([ FindExecutable('findscu'),
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93 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'],
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94 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
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95 stderr=subprocess.PIPE)
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96 return p.communicate()[1]
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98
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99 def CallMoveScu(args):
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100 subprocess.check_call([ FindExecutable('movescu'),
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101 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp)
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102 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc)
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103 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp)
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104 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args,
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105 stderr=subprocess.PIPE)
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106
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107
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108
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109 def GenerateTestSequence():
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110 return [
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111 {
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112 'StudyDescription': 'Hello^',
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113 'ReferencedStudySequence' : [
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114 {
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115 'StudyDescription': 'Toto',
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116 },
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117 {
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118 'StudyDescription': 'Tata',
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119 },
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120 ]
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121 },
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122 {
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123 'StudyDescription': 'Sébastien^',
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124 'StudyDate' : '19700202',
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125 }
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126 ]
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127
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128
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129
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130
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131 class Orthanc(unittest.TestCase):
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132 def setUp(self):
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133 if (sys.version_info >= (3, 0)):
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134 # Remove annoying warnings about unclosed socket in Python 3
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135 import warnings
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136 warnings.simplefilter("ignore", ResourceWarning)
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137
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138 DropOrthanc(_LOCAL)
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139 DropOrthanc(_REMOTE)
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140 UninstallLuaCallbacks()
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141 #print "In test", self._testMethodName
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142
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143 def AssertSameImages(self, truth, url):
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144 im = GetImage(_REMOTE, url)
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145 self.assertTrue(CompareLists(truth, im.getdata()))
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146
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147
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148 def test_system(self):
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149 self.assertTrue('Version' in DoGet(_REMOTE, '/system'))
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150 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
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parents:
diff changeset
151 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
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parents:
diff changeset
152
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diff changeset
153 def test_upload(self):
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parents:
diff changeset
154 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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parents:
diff changeset
155 self.assertEqual('Success', u['Status'])
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parents:
diff changeset
156 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
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parents:
diff changeset
157 self.assertEqual('AlreadyStored', u['Status'])
2dbba2e6aa4b reorganization
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parents:
diff changeset
158 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
2dbba2e6aa4b reorganization
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parents:
diff changeset
159 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
2dbba2e6aa4b reorganization
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parents:
diff changeset
160 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
2dbba2e6aa4b reorganization
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parents:
diff changeset
161 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
2dbba2e6aa4b reorganization
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parents:
diff changeset
162
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parents:
diff changeset
163 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164 self.assertEqual('20070101', i['StudyDate'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165
2dbba2e6aa4b reorganization
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parents:
diff changeset
166
5
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parents: 3
diff changeset
167 def test_upload_2(self):
3
2dbba2e6aa4b reorganization
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parents:
diff changeset
168 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
2dbba2e6aa4b reorganization
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parents:
diff changeset
169 instance = DoGet(_REMOTE, '/instances/%s' % i)
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parents:
diff changeset
170 self.assertEqual(i, instance['ID'])
2dbba2e6aa4b reorganization
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parents:
diff changeset
171 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109',
2dbba2e6aa4b reorganization
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parents:
diff changeset
172 instance['MainDicomTags']['SOPInstanceUID'])
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parents:
diff changeset
173
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parents:
diff changeset
174 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries'])
2dbba2e6aa4b reorganization
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parents:
diff changeset
175 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176 series['MainDicomTags']['SeriesInstanceUID'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177
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parents:
diff changeset
178 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy'])
2dbba2e6aa4b reorganization
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parents:
diff changeset
179 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
2dbba2e6aa4b reorganization
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parents:
diff changeset
180 study['MainDicomTags']['StudyInstanceUID'])
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181
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parents:
diff changeset
182 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 self.assertEqual('ozp00SjY2xG',
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 patient['MainDicomTags']['PatientID'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185
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parents:
diff changeset
186 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187 self.assertEqual(2472, len(dicom))
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom))
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value'])
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
192
2dbba2e6aa4b reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193
5
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
194 def test_images(self):
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
195 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID']
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parents: 3
diff changeset
196 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
3
2dbba2e6aa4b reorganization
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parents:
diff changeset
197
5
19eb87a45685 test_images
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parents: 3
diff changeset
198 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
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parents: 3
diff changeset
199 self.assertEqual("L", im.mode)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
200 self.assertEqual(512, im.size[0])
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
201 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
202
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
203 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i)
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parents: 3
diff changeset
204 self.assertEqual("L", im.mode)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
205 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
206 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
207
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
208 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
209 self.assertEqual(512, im.size[0])
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
210 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
211
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
212 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
213 self.assertEqual("L", im.mode)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
214 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
215 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
216
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
217 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
218 self.assertEqual("L", im.mode)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
219 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
220 self.assertEqual(358, im.size[1])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
221
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
222 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
223 self.assertEqual(512, im.size[0])
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
224 self.assertEqual(358, im.size[1])
64
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
225
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
226 # This is Little Endian Explicit
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
227 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID'])
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
228
6
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
229
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
230 def test_hierarchy(self):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
231 UploadFolder(_REMOTE, 'Brainix/Epi')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
232 UploadFolder(_REMOTE, 'Brainix/Flair')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
233 UploadFolder(_REMOTE, 'Knee/T1')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
234 UploadFolder(_REMOTE, 'Knee/T2')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
235
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
236 p = DoGet(_REMOTE, '/patients')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
237 s = DoGet(_REMOTE, '/studies')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
238 t = DoGet(_REMOTE, '/series')
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
239 self.assertEqual(2, len(p))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
240 self.assertEqual(2, len(s))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
241 self.assertEqual(4, len(t))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
242 self.assertEqual(94, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
243
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
244 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
245 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
246 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
247 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
248
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
249 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
250 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
251 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
252 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59'
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
253
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
254 self.assertTrue(brainixPatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
255 self.assertTrue(kneePatient in p)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
256 self.assertTrue(brainixStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
257 self.assertTrue(kneeStudy in s)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
258 self.assertTrue(brainixEpi in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
259 self.assertTrue(brainixFlair in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
260 self.assertTrue(kneeT1 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
261 self.assertTrue(kneeT2 in t)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
262
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
263 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
264 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
265 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
266
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
267 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
268 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
269 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
270
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
271 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
272 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
273
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
274 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
275 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
276
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
277 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
278 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair)))
6d645b3011e1 test_hierarchy
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parents: 5
diff changeset
279 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1)))
6d645b3011e1 test_hierarchy
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parents: 5
diff changeset
280 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2)))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
281
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
282 for patient in p:
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
283 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
284 self.assertEqual(patient, study['ParentPatient'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
285 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
286 self.assertEqual(study['ID'], series['ParentStudy'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
287 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']):
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
288 self.assertEqual(series['ID'], instance['ParentSeries'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
289
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
290 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])),
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
291 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID'])))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
292
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
293
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
294 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
295 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
296 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
297 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
298 self.assertEqual(50, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
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parents: 5
diff changeset
299 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
300
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
301 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
302 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
303 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
304 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
305 self.assertEqual(24, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
306 self.assertEqual('Study', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
307 self.assertEqual(kneeStudy, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
308
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
309 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
310 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
311 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
312 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
313 self.assertEqual(23, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
314 self.assertEqual('Series', r['Type'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
315 self.assertEqual(kneeT1, r['ID'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
316
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
317 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor']
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
318 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
319 self.assertEqual(0, len(DoGet(_REMOTE, '/studies')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
320 self.assertEqual(0, len(DoGet(_REMOTE, '/series')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
321 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
322 self.assertEqual(None, r)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
323
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
324 DropOrthanc(_REMOTE)
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
325 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
326 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
327
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
328
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
329 def test_multiframe(self):
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
330 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
331 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i)))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
332
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
333 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
334 self.assertEqual("L", im.mode)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
335 self.assertEqual(512, im.size[0])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
336 self.assertEqual(512, im.size[1])
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
337
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
338 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
339 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
340 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i)
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
341 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
342 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i))
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
343
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
344
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
345 def test_changes(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
346 # Check emptiness
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
347 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
348 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
349 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
350 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
351 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
352 self.assertEqual(0, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
353 self.assertEqual(0, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
354 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
355
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
356 # Add 1 instance
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
357 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
358 c = DoGet(_REMOTE, '/changes')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
359 begin = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
360 self.assertEqual(4, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
361 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
362 self.assertEqual(c['Changes'][-1]['Seq'], c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
363
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
364 c = DoGet(_REMOTE, '/changes?last')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
365 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
366 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
367 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
368 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
369 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
370 self.assertEqual(begin, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
371 self.assertTrue(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
372 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
373 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
374 self.assertEqual(begin - 1, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
375 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
376 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
377 self.assertEqual(1, len(c['Changes']))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
378 self.assertEqual(begin - 2, c['Last'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
379 self.assertFalse(c['Done'])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
380
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
381 UploadFolder(_REMOTE, 'Knee/T1')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
382 UploadFolder(_REMOTE, 'Knee/T2')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
383 since = begin
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
384 countPatients = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
385 countStudies = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
386 countSeries = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
387 countInstances = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
388 completed = 0
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
389 while True:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
390 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 })
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
391 since = c['Last']
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
392 for i in c['Changes']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
393 if i['ResourceType'] == 'Instance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
394 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
395 if i['ResourceType'] == 'Patient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
396 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
397 if i['ResourceType'] == 'Study':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
398 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
399 if i['ResourceType'] == 'Series':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
400 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
401 if i['ChangeType'] == 'NewInstance':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
402 countInstances += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
403 if i['ChangeType'] == 'NewPatient':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
404 countPatients += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
405 if i['ChangeType'] == 'NewStudy':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
406 countStudies += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
407 if i['ChangeType'] == 'NewSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
408 countSeries += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
409 if i['ChangeType'] == 'CompletedSeries':
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
410 completed += 1
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
411 self.assertTrue('ID' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
412 self.assertTrue('Path' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
413 self.assertTrue('Seq' in i)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
414 if c['Done']:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
415 break
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
416
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
417 self.assertEqual(2 * 50, countInstances)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
418 self.assertEqual(2 * 1, countPatients)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
419 self.assertEqual(2 * 1, countStudies)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
420 self.assertEqual(2 * 2, countSeries)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
421 self.assertEqual(0, completed)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
422
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
423
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
424 def test_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
425 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
426 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
427
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
428 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
429 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
430
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
431 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
432 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
433
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
434 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
435 self.assertEqual(1, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
436
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
437 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
438
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
439 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
440 self.assertEqual(2, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
441
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
442
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
443 def test_media_archive(self):
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
444 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
445 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
446
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
447 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
448 self.assertEqual(3, len(z.namelist()))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
449 self.assertTrue('IMAGES/IM0' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
450 self.assertTrue('IMAGES/IM1' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
451 self.assertTrue('DICOMDIR' in z.namelist())
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
452
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
453 try:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
454 os.remove('/tmp/DICOMDIR')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
455 except:
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
456 # The file does not exist
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
457 pass
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
458
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
459 z.extract('DICOMDIR', '/tmp')
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
460 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ],
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
461 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
462 self.assertEqual(3, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
463 self.assertTrue(a[0].startswith('Warning'))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
464 self.assertEqual('BasicDirectory', a[1])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
465 self.assertEqual('', a[2])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
466
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
467 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ],
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
468 stderr = subprocess.STDOUT).split('\n')
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
469 self.assertEqual(1, len(a))
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
470 self.assertEqual('', a[0])
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
471
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
472 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ])
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
473 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
474 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None)
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
475
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
476 os.remove('/tmp/DICOMDIR')
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
477
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
478
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
479 def test_protection(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
480 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
481 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
482 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
483 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
484 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
485 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
486 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
487 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
488 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
489 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
490 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
491 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
492
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
493
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
494 def test_raw_tags(self):
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
495 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
496
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
497 dicom = DoGet(_REMOTE, '/instances/%s/file' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
498 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
499
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
500 s = '/instances/%s/content/' % i
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
501
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
502 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
503 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
504
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
505 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
506 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
507
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
508 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
509 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
510 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
511 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
512
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
513 for i in DoGet(_REMOTE, '/instances'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
514 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
515 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), ''))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
516
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
517
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
518 def test_raw_tags_mdn(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
519 # Bug reported by Cyril Paulus
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
520 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
521 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
522
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
523
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
524 def test_modify_instance(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
525 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
526 modified = DoPost(_REMOTE, '/instances/%s/modify' % i,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
527 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
528 "Replace" : {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
529 "PatientName" : "hello",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
530 #"PatientID" : "world"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
531 },
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
532 "Remove" : [ "StationName" ],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
533 "RemovePrivateTags" : None
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
534 }),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
535 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
536 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
537
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
538 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
539 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip())
83
3f2170efa8d2 patches for python3
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 81
diff changeset
540 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip())
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
541 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
542
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
543 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
544 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
545 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
546 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
547
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
548
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
549 def test_modify_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
550 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
551 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
552 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
553
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
554 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
555 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
556 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
557 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
558
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
559 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
560 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
561 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
562 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
563 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
564 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
565 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
566
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
567 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
568 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
569
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
570
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
571 def test_modify_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
572 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
573 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
574 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
575 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
576
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
577 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
578 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
579 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
580 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
581
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
582 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
583 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
584 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
585 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
586 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
587 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
588 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
589
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
590 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
591 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
592 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
593 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
594 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
595
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
596 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
597 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
598
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
599
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
600 def test_anonymize_series(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
601 # Upload 4 images from the same series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
602 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
603 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
604
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
605 origSeries = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
606 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
607 '{}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
608 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
609
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
610 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
611 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
612 self.assertEqual(4, len(instances))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
613 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
614 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
615 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
616 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
617
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
618 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
619 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
620
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
621
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
622 def test_anonymize_study(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
623 # Upload 4 images from the 2 series of the same study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
624 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
625 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
626 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
627
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
628 origStudy = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
629 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
630 '{"Replace":{"PatientName":"Jodogne"}}',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
631 'application/json')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
632
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
633 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
634 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
635 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
636 for s in series:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
637 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
638 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
639 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
640
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
641 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
642 for i in instances:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
643 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
644 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
645 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
646
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
647 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
648 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip())
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
649
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
650
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
651
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
652 def test_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
653 # Check emptiness
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
654 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
655 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
656 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
657 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
658 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
659 self.assertEqual(0, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
660 self.assertEqual(0, e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
661 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
662
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
663 # Add 1 instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
664 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
665 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
666
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
667 # Export the instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
668 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
669 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
670 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
671 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
672 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
673
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
674 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
675 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
676 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
677 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
678 e = DoGet(_REMOTE, '/exports?limit=1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
679 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
680 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
681 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
682 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
683 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
684 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
685 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
686 seqInstance = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
687
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
688 # Export the series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
689 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
690
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
691 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
692 self.assertEqual(2, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
693 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
694 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
695 seqSeries = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
696 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
697 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
698 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
699 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
700 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
701 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
702 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
703 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
704 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
705 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
706 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
707 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
708 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
709
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
710 # Export the study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
711 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
712 seqStudy = DoGet(_REMOTE, '/exports')['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
713
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
714 # Export the patient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
715 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
716 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
717 self.assertEqual(1, len(DoGet(_LOCAL, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
718 self.assertEqual(1, len(DoGet(_LOCAL, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
719 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
720
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
721 e = DoGet(_REMOTE, '/exports')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
722 self.assertEqual(4, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
723 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
724 self.assertEqual(e['Exports'][-1]['Seq'], e['Last'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
725 seqPatient = e['Last']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
726 self.assertNotEqual(seqInstance, seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
727 self.assertNotEqual(seqSeries, seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
728 self.assertNotEqual(seqStudy, seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
729 self.assertTrue(seqInstance < seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
730 self.assertTrue(seqSeries < seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
731 self.assertTrue(seqStudy < seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
732 e = DoGet(_REMOTE, '/exports?limit=1&since=0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
733 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
734 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
735 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
736 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
737 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
738 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
739 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
740 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
741 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
742 self.assertFalse(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
743 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
744 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
745 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
746 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
747 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
748 e = DoGet(_REMOTE, '/exports?last')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
749 self.assertEqual(1, len(e['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
750 self.assertTrue(e['Done'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
751 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
752
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
753
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
754 # Check the content of the logged information
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
755 e = DoGet(_REMOTE, '/exports')['Exports']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
756
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
757 if 'PatientID' in e[0]:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
758 # Since Orthanc 0.8.6
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
759 patient = 'PatientID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
760 study = 'StudyInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
761 series = 'SeriesInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
762 instance = 'SOPInstanceUID'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
763 else:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
764 # Up to Orthanc 0.8.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
765 patient = 'PatientId'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
766 study = 'StudyInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
767 series = 'SeriesInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
768 instance = 'SopInstanceUid'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
769
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
770 for k in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
771 self.assertTrue('Date' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
772 self.assertTrue('Seq' in e[k])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
773 self.assertEqual('orthanctest', e[k]['RemoteModality'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
774
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
775 self.assertEqual(10, len(e[0]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
776 self.assertEqual('Instance', e[0]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
777 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
778 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
779 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
780 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
781 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
782 self.assertEqual('ozp00SjY2xG', e[0][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
783
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
784 self.assertEqual(9, len(e[1]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
785 self.assertEqual('Series', e[1]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
786 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
787 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
788 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
789 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
790 self.assertEqual('ozp00SjY2xG', e[1][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
791
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
792 self.assertEqual(8, len(e[2]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
793 self.assertEqual('Study', e[2]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
794 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
795 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
796 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
797 self.assertEqual('ozp00SjY2xG', e[2][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
798
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
799 self.assertEqual(7, len(e[3]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
800 self.assertEqual('Patient', e[3]['ResourceType'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
801 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
802 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
803 self.assertEqual('ozp00SjY2xG', e[3][patient])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
804
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
805 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
806 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
807
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
808
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
809 def test_store_peer(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
810 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
811 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
812
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
813 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
814 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
815 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
816
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
817 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
818 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
819 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
820
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
821 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
822
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
823 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
824 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
825
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
826
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
827 def test_bulk_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
828 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
829
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
830 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
831 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
832
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
833 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
834 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
835
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
836 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
837
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
838 # Send using patient's UUID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
839 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
840 j = DoPost(_REMOTE, '/modalities/orthanctest/store',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
841 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
842 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
843
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
844
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
845 def test_color(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
846 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
847 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
848 self.assertEqual("RGB", im.mode)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
849 self.assertEqual(41, im.size[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
850 self.assertEqual(41, im.size[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
851
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
852 # http://effbot.org/zone/pil-comparing-images.htm
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
853 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png'))
11
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
854 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
855
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 10
diff changeset
856
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
857 def test_faking_ruby_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
858 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
859 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
860 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
861 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
862 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
863 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
864 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
865 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
866 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
867 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
868 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
869 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
870
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
871
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
872 def test_faking_ruby_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
873 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
874 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
875 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
876 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
877 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
878 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
879 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
880 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
881 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
882
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
883
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
884 def test_faking_google_put(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
885 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
886 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
887 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
888 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
889 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
890 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
891 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
892 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
893 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
894 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
895 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
896 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
897
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
898
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
899 def test_faking_google_delete(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
900 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
901 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
902 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
903 a = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
904 b = DoGet(_REMOTE, '/patients')[1]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
905 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
906 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
907 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
908 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
909
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
910
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
911 def test_lua(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
912 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
913 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
914 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
915
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
916
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
917 def test_metadata(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
918 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
919 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
920 i = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
921
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
922 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
923 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
924 self.assertEqual('LastUpdate', m[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
925
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
926 m = DoGet(_REMOTE, '/instances/%s/metadata' % i)
95
a807a4699eb4 testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 92
diff changeset
927 self.assertEqual(6, len(m))
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
928 self.assertTrue('IndexInSeries' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
929 self.assertTrue('ReceptionDate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
930 self.assertTrue('RemoteAET' in m)
63
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
931 self.assertTrue('Origin' in m)
89
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
932 self.assertTrue('TransferSyntax' in m)
95
a807a4699eb4 testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 92
diff changeset
933 self.assertTrue('SopClassUid' in m)
63
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
934 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1)
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
935 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi')
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
936 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API
89
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
937 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i), '1.2.840.10008.1.2.4.91') # JPEG2k
95
a807a4699eb4 testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 92
diff changeset
938 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i), '1.2.840.10008.5.1.4.1.1.4')
12
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
939
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
940 # Play with custom metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
941 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
942 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
943 self.assertEqual(2, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
944 self.assertTrue('LastUpdate' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
945 self.assertTrue('5555' in m)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
946 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
947 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
948 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
949 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
950 m = DoGet(_REMOTE, '/patients/%s/metadata' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
951 self.assertEqual(1, len(m))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
952 self.assertTrue('LastUpdate' in m)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
953
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
954
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
955 def test_statistics(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
956 # Upload 16 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
957 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
958 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
959 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
960 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
961 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
962
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
963 s = DoGet(_REMOTE, '/statistics')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
964 self.assertEqual(16, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
965 self.assertEqual(2, s['CountPatients'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
966 self.assertEqual(2, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
967 self.assertEqual(4, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
968 d = int(s['TotalUncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
969
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
970 e = 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
971 for patient in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
972 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
973 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
974 self.assertEqual(1, s['CountStudies'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
975 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
976 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
977
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
978 for study in DoGet(_REMOTE, '/studies'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
979 s = DoGet(_REMOTE, '/studies/%s/statistics' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
980 self.assertEqual(8, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
981 self.assertEqual(2, s['CountSeries'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
982 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
983
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
984 for series in DoGet(_REMOTE, '/series'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
985 s = DoGet(_REMOTE, '/series/%s/statistics' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
986 self.assertEqual(4, s['CountInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
987 e += int(s['UncompressedSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
988
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
989 self.assertEqual(3 * d, e)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
990
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
991
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
992 def test_custom_attachment(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
993 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
994 patient = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
995 instance = DoGet(_REMOTE, '/instances')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
996 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
997 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
998
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
999 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1000 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1001 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1002 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1003
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1004 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1005 hello = 'hellohellohellohellohellohellohellohellohello'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1006 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1007 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1008 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1009 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1010 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1011
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1012 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1013 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1014 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1015 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1016 size +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1017 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1018 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1019
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1020 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1021 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1022 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1023 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1024 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1025 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1026 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1027
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1028 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1029 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1030 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1031 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1032 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1033 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1034
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1035 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1036 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1037 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1038
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1039 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1040 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize']))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1041
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1042
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1043 def test_incoming_storescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1044 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
1045 subprocess.check_call([ FindExecutable('storescu'),
44
ffa542cce638 Toolbox.FindExecutable()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 43
diff changeset
1046 _REMOTE['Server'], str(_REMOTE['DicomPort']),
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1047 GetDatabasePath('ColorTestImageJ.dcm') ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1048 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1049
63
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1050 i = DoGet(_REMOTE, '/instances')
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1051 self.assertEqual(1, len(i))
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1052 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0])
95
a807a4699eb4 testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 92
diff changeset
1053 self.assertEqual(6, len(m))
63
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1054 self.assertTrue('IndexInSeries' in m)
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1055 self.assertTrue('ReceptionDate' in m)
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1056 self.assertTrue('RemoteAET' in m)
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1057 self.assertTrue('Origin' in m)
89
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
1058 self.assertTrue('TransferSyntax' in m)
95
a807a4699eb4 testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 92
diff changeset
1059 self.assertTrue('SopClassUid' in m)
63
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1060 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1)
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1061 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol')
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1062 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU')
89
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
1063 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i[0]), '1.2.840.10008.1.2.1')
95
a807a4699eb4 testing of metadata SopClassUid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 92
diff changeset
1064 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % i[0]), '1.2.840.10008.5.1.4.1.1.7')
63
2652d562267a test Origin metadata of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
1065
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1066
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1067 def test_incoming_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1068 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1069 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1070
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1071 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1072 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1073 self.assertEqual(2, len(patientNames))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1074 self.assertTrue('Test Patient BG ' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1075 self.assertTrue('Anonymized' in patientNames)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1077 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1078 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1079 self.assertEqual(2, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1080 self.assertTrue('20070208' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1081 self.assertTrue('19980312' in series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1082
56
1059b8de42de ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
1083 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ])
1059b8de42de ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
1084 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i)
1059b8de42de ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
1085 self.assertEqual(1, len(series))
1059b8de42de ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
1086 self.assertTrue('19980312' in series)
1059b8de42de ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 55
diff changeset
1087
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1088 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1089 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1090 self.assertEqual(1, len(series))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1091
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1092 # Test the "CaseSentitivePN" flag (false by default)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1093 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1094 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1095 self.assertEqual(1, len(series))
66
821d9eb73c45 Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
1096
821d9eb73c45 Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
1097 # Test returning sequence values (only since Orthanc 0.9.5)
821d9eb73c45 Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
1098 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag
821d9eb73c45 Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
1099 sequences = re.findall('\(0008,2112\)', i)
821d9eb73c45 Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
1100 self.assertEqual(1, len(sequences))
70
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1101
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1102 # Test range search (buggy if Orthanc <= 0.9.6)
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1103 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ])
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1104 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i)
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1105 self.assertEqual(2, len(studies))
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1106 self.assertTrue('20070208' in studies)
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1107 self.assertTrue('19980312' in studies)
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1108 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ])
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1109 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i)
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1110 self.assertEqual(1, len(studies))
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1111 self.assertTrue('19980312' in studies)
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1112 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ])
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1113 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i)
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1114 self.assertEqual(1, len(studies))
9e7b5809481f test range search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 69
diff changeset
1115 self.assertTrue('19980312' in studies)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1116
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1117
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1118 def test_incoming_movescu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1119 UploadInstance(_REMOTE, 'Multiframe.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1120
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1121 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1122 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ])
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1123 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1124 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1125 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1126
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1127
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1128 def test_findscu(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1129 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1130 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1131 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1132 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1133
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1134 # Test the "find-patient" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1135 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1136 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1137 self.assertEqual('ozp00SjY2xG', p[0]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1138
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1139 # Test wildcards constraints. The "LO" value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1140 # for PatientID is always case-sensitive, but the "PN" for
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1141 # PatientName might depend on the implementation:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1142 # "GenerateConfigurationForTests.py" will force it to be case
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1143 # insensitive (which was the default until Orthanc 0.8.6).
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1144 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1145 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1146
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1147 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1148 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1149
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1150 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1151 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1152
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1153 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1154 self.assertEqual(1, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1155
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1156 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1157 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1158
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1159 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1160 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1161
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1162 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1163 self.assertEqual(0, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1164
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1165 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1166 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1167 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1168 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { })))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1169
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1170 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1171 self.assertEqual(2, len(p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1172
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1173 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1174 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1175 self.assertEqual(1, len(s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1176 self.assertEqual('20070208', s[0]['StudyDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1177
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1178 # Test range searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1179 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1180 'StudyDate' : '-20070101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1181 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1182
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1183 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1184 'StudyDate' : '20090101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1185 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1186
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1187 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1188 'StudyDate' : '20070101-' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1189 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1190
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1191 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1192 'StudyDate' : '-20090101' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1193 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1194
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1195 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1196 'StudyDate' : '20070207-20070207' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1197 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1198
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1200 'StudyDate' : '20070208-20070208' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1201 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1202
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1203 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1204 'StudyDate' : '20070209-20070209' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1205 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1206
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1207 # Test the ModalitiesInStudy tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1208 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1209 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1210 'ModalitiesInStudy' : 'US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1211 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1212
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1213 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1214 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1215 'ModalitiesInStudy' : 'CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1216 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1217
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1218 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1219 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1220 'ModalitiesInStudy' : 'US\\CT' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1221 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1222
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1223 # Test the "find-series" level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1224 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1225 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1226 'StudyInstanceUID' : s[0]['StudyInstanceUID'] })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1227 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1228
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1229 # Test "\" separator
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1230 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1231 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1232 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1233 'Modality' : 'MR\\CT\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1234 self.assertEqual(1, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1235
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1236 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1237 'PatientID' : 'B9uTHKOZ',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1238 'StudyInstanceUID' : s[0]['StudyInstanceUID'],
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1239 'Modality' : 'MR\\US' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1240 self.assertEqual(0, len(t))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1241
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1242
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1243 def test_update_modalities(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1244 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1245 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1246 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1247 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1248 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1249 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1250 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1251 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1252 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1253 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ])
116
4a196ebc7a4f updated tests for issue #31
amazy
parents: 112
diff changeset
1254 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) # check backward compatiblity with obsolete manufacturer
4a196ebc7a4f updated tests for issue #31
amazy
parents: 112
diff changeset
1255 DoDelete(_REMOTE, '/modalities/tata')
4a196ebc7a4f updated tests for issue #31
amazy
parents: 112
diff changeset
1256 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'GenericNoWildcards' ])
4a196ebc7a4f updated tests for issue #31
amazy
parents: 112
diff changeset
1257 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'InvalidManufacturerName' ]))
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1258 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1259 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1260 DoDelete(_REMOTE, '/modalities/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1261 DoDelete(_REMOTE, '/modalities/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1262 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1263 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1264
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1265
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1266 def test_update_peers(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1267 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1268 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1269 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1270 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1271 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1272 try:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1273 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1274 except:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1275 pass
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1276 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1277 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1278 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1279 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1280 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1281 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1282 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1283 DoDelete(_REMOTE, '/peers/toto')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1284 DoDelete(_REMOTE, '/peers/tata')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1285 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1286 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1287
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1288
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1289 def test_mesterhazy_modification(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1290 # When I modify a series ( eg. curl
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1291 # http://localhost:8042/series/uidhere/modify -X POST -d
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1292 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1293 # series is added to a new Study, instead of the existing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1294 # Study. Fixed in Orthanc 0.7.5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1295
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1296 u = UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1297 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1298 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1299
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1300 modified = DoPost(_REMOTE, '/series/%s/modify' % series,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1301 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }}))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1302
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1303 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1304
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1305
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1306 def test_create(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1307 i = DoPost(_REMOTE, '/tools/create-dicom',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1308 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1309 'PatientName' : 'Jodogne',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1310 'Modality' : 'CT',
58
b5518378e23b fix test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1311 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1',
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1312 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1313 }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1314
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1315 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1316 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1317
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1318 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1319 self.assertEqual((5, 5), png.size)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1320
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1321 j = DoGet(_REMOTE, i['Path'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1322 self.assertEqual('Instance', j['Type'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1323 self.assertEqual(j['ID'], i['ID'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
1324
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1325
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1326 def test_pilates(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1327 # "SCU failed error when accessing orthanc with osirix" by
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1328 # Pilates Agentur (Mar 10, 2014 at 9:33 PM)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1329 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1330 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1331 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1332 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1333
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1334
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1335 def test_shared_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1336 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1337 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1338 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1339
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1340 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1341 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1342 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1343 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1344 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1345 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1346 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1347 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1348
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1349 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1350 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1351
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1352
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1353 def test_modules(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1354 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1355 p = DoGet(_REMOTE, '/patients')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1356 s = DoGet(_REMOTE, '/studies')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1357 t = DoGet(_REMOTE, '/series')[0]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1358
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1359 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1360 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1361 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1362 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1363 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1364 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1365 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1366 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1367 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1368 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1369
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1370
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1371 def test_auto_directory(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1372 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1373 self.assertTrue('now' in DoGet(_REMOTE, '/tools'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1374 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools'))
87
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
1375 self.assertTrue('invalidate-tags' in DoGet(_REMOTE, '/tools'))
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1376 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1377 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1378 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1379 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1380 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1381 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1382 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1383 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1384 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1385 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1386 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a))
79
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
1387 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a))
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1388 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope'))
28
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1389 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope'))
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1390 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html'))
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1391 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status)
156c7ae164b5 new test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 27
diff changeset
1392 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status)
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1393
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1394
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1395 def test_echo(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1396 DoPost(_REMOTE, '/modalities/orthanctest/echo')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1397
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1398
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1399 def test_xml(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1400 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' })
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1401 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' }))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1402 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1403 self.assertEqual(len(items), len(json))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1404
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1405 self.assertTrue('dicom-conformance' in json)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1406
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1407 ok = False
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1408 for i in items:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1409 if i.childNodes[0].data == 'dicom-conformance':
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1410 ok = True
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1411 self.assertTrue(ok)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1412
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1413
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1414 def test_googlecode_issue_16(self):
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1415 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1416 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1417 self.assertEqual('0018,1063', t)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1418
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1419
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1420 def test_googlecode_issue_22(self):
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1421 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1422 a = [
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1423 "f804691f62197040438f4627c6b994f1", # Frame 0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1424 "c69eee9a51eea3e8611e82e578897254",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1425 "315666be83e2d0111c77bc0996d84901",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1426 "3e27aa959d911172c48a1436443c72b1",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1427 "958642c9e7e9d232d3869faff546058c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1428 "5e7ea8e3e4230cae707d143481355c59",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1429 "eda37f83558d858a596175aed8b2ad47",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1430 "486713bd2895c4ecbe0e97715ac7f80a",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1431 "091ef729eb169e67da8a0faa9631f9a8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1432 "5aa2b8c7ffe0a483efaa8e12417686ca",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1433 "e2f39e85896fe58876654b94cd0b5013",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1434 "6fd2129e4950abbe1be053bc814d5da8",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1435 "c3331a8ba7a757f3d423735ab7fa81f9",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1436 "746f808582156734dd6b6fdfd3a0b72c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1437 "8075ea2b227a70c60ea6b7b75a6bb190",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1438 "806b8b3e300c615099c11a5ec23465aa",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1439 "7c836aa298ba6eef96434579af631a11",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1440 "a0357dc9f4f72d73a885c33d7c287446",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1441 "f25ba3be1cc7d7fad95706adc199ea7d",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1442 "8b114c526b8cbed6cad8a3248b7b480c",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1443 "44e6670f127e612a2b4aa60a0d207698",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1444 "b8945f90fe02facf2ace24ca1ecbe0a5",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1445 "95c796c2fa8f59018b15cf2987b1f79b",
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1446 "ce0a51ab30224205b44920221dc27351", # Frame 23
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1447 ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1448
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1449 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1450 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1451
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1452 for i in range(len(a)):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1453 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i))))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1454
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1455
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1456 def test_googlecode_issue_19(self):
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1457 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1458 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1459
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1460 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID']
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1461 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview'))
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1462
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1463
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
1464 def test_googlecode_issue_37(self):
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1465 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1466 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1467
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1468 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1469 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1470 'Query' : { 'StationName' : 'SMR4-MP3' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 12
diff changeset
1471 self.assertEqual(1, len(a))
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1472
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1473
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1474 def test_rest_find(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1475 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1476 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1477 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1478 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1479 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1480 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1481
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1482 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1483 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1484 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1485 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1486
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1487 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1488 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1489 'Query' : { 'PatientName' : '*n*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1490 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1491
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1492 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1493 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1494 'CaseSensitive' : False,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1495 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1496 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1497 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1498
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1499 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1500 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1501 'Query' : { 'PatientName' : '*ne*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1502 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1503
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1504 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1505 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1506 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1507 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1508
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1509 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1510 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1511 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1512 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1514 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1515 'CaseSensitive' : True,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1516 'Query' : { 'PatientName' : '*NE*' }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1517 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1518
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1519 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1520 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1521
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1522 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1523 self.assertEqual(2, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1524
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1525 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1526 self.assertEqual(4, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1527
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1528 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }})
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1529 self.assertEqual(8, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1530
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1531
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1532 def test_rest_query_retrieve(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1533 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1534
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1535 # Upload 8 instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1536 for i in range(2):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1537 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1538 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1539 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1540 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1541
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1542 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1543 for p in DoGet(_REMOTE, '/patients'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1544 DoPost(_REMOTE, '/modalities/orthanctest/store', p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1545 DoDelete(_REMOTE, '/patients/%s' % p)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1546
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1547 for q in DoGet(_REMOTE, '/queries'):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1548 DoDelete(_REMOTE, '/queries/%s' % q)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1549
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1550 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1551 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1552 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series',
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1553 'Query' : {
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1554 'PatientName' : '*NE*',
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1555 'StudyDate' : '*',
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1556 }})['ID']
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1557 self.assertEqual(1, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1558
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1559 b = DoGet(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1560 self.assertTrue('answers' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1561 self.assertTrue('level' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1562 self.assertTrue('modality' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1563 self.assertTrue('query' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1564 self.assertTrue('retrieve' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1565 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1566 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1568 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a)
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1569 self.assertEqual(2, len(q))
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1570 self.assertTrue('PatientName' in q)
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1571 self.assertTrue('StudyDate' in q)
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1572 self.assertEqual('*NE*', q['PatientName'])
27
cde1691838d3 wildcard test
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 26
diff changeset
1573 self.assertEqual('*', q['StudyDate'])
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1574
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1575 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a)))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1576
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1577 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1578 self.assertTrue('content' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1579 self.assertTrue('retrieve' in s)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1580
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1581 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1582 self.assertEqual('887', s['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1583 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1584
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1585 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1586 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1587 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1588 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1589 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1590 self.assertEqual(2, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1591
112
9d09f6f21b60 added a test for issue #36
amazy
parents: 111
diff changeset
1592 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC', 'application/json') # make sure the issue #36 is fixed (query/retrieve Rest API: /retrieve route shall accept application/json content type)
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1593 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1594 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1595 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1596 self.assertEqual(4, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1597
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1598 DoDelete(_REMOTE, '/queries/%s' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1599 self.assertEqual(0, len(DoGet(_REMOTE, '/queries')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1600
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1601
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1602 def test_parent(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1603 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1604 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1605 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1606 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1607 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d'
107
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
1608 self.assertEqual(instance, u)
14
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1609
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1610 a = DoGet(_REMOTE, '/studies/%s/patient' % study)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1611 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1612 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1613
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1614 a = DoGet(_REMOTE, '/series/%s/patient' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1615 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1616 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1617
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1618 a = DoGet(_REMOTE, '/series/%s/study' % series)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1619 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1620 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1621
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1622 a = DoGet(_REMOTE, '/instances/%s/patient' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1623 self.assertEqual('Patient', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1624 self.assertEqual(patient, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1625
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1626 a = DoGet(_REMOTE, '/instances/%s/study' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1627 self.assertEqual('Study', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1628 self.assertEqual(study, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1629
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1630 a = DoGet(_REMOTE, '/instances/%s/series' % instance)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1631 self.assertEqual('Series', a['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1632 self.assertEqual(series, a['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1633
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1634
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1635 def test_shanon(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1636 def Anonymize(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1637 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1638
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1639 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1640 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1641 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1642
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1643 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1644 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1645 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1646 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1647 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1648
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1649 a = ExtractDicomTags(Anonymize(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1650 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1651 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1652 self.assertTrue(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1653
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1654 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1655 for i in range(4):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1656 self.assertNotEqual(ids[i], a[i])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1657 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1658
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1659 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1660 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1661 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1662
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1663 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1664 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1665 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1666
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1667 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1668 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1669 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1670
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1671 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1672 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1673 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1674
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1675 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1676 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1677 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1678 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1679 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1680 self.assertFalse(a[4].startswith('Orthanc'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1681
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1682 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1683
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1684
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1685 def test_shanon_2(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1686 def Modify(instance, replacements = {}):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1687 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1688
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1689 self.assertEqual(0, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1690 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1691 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1692
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1693 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1694 ids = [ 'ozp00SjY2xG',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1695 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1696 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1697 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ]
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1698
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1699 a = ExtractDicomTags(Modify(u), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1700 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1701 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1702 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1703 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1704 self.assertEqual(0, len(a[4]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1705
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1706 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1707 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1708 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1709 self.assertEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1710 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1711
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1712 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1713 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1714 self.assertEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1715 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1716 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1717
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1718 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1719 self.assertEqual(ids[0], a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1720 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1721 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1722 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1723
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1724 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1725 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1726 self.assertNotEqual(ids[1], a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1727 self.assertNotEqual(ids[2], a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1728 self.assertNotEqual(ids[3], a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1729
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1730 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1731 'StudyInstanceUID' : 'study',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1732 'SeriesInstanceUID' : 'series',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1733 'SOPInstanceUID' : 'instance' }), tags)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1734 self.assertEqual('patient', a[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1735 self.assertEqual('study', a[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1736 self.assertEqual('series', a[2])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1737 self.assertEqual('instance', a[3])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1738
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1739 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1740
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1741
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1742 def test_instances_tags(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1743 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1744 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1745 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1746 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1747
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1748 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1749 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1750 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1751 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1752
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1753 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1754 self.assertEqual(2, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1755 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1756 self.assertEqual('887', i[i.keys()[1]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1757
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1758 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1759 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1760 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1761 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1762
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1763 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1764 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1765 self.assertEqual('887', i[i.keys()[0]]['PatientID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1766
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1767
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1768 def test_lookup(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1769 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1770 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1771
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1772 UploadInstance(_REMOTE, 'DummyCT.dcm')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1773
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1774 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1775 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1776 self.assertEqual('Patient', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1777 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1778 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1779
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1780 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1781 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1782 self.assertEqual('Study', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1783 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1784 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1785
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1786 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1787 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1788 self.assertEqual('Series', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1789 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1790 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1791
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1792 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1793 self.assertEqual(1, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1794 self.assertEqual('Instance', a[0]['Type'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1795 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1796 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1797
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1798 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1799 a = DoPost(_REMOTE, '/tools/lookup', '3113719P')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1800 self.assertEqual(0, len(a))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 13
diff changeset
1801
15
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1802
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1803 def test_autorouting(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1804 knee1 = 'Knee/T1/IM-0001-0001.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1805 knee2 = 'Knee/T2/IM-0001-0002.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1806 other = 'Brainix/Flair/IM-0001-0001.dcm'
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1807
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1808 # Check that this version is >= 0.8.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1809 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1810 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1811
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1812 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1813 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1814
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1815 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1816 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1817 InstallLuaScript('Lua/Autorouting.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1818 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1819 UploadInstance(_REMOTE, knee2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1820 UploadInstance(_REMOTE, other)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1821 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1822 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1823 self.assertEqual(3, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1824
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1825 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1826 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1827 InstallLuaScript('Lua/AutoroutingConditional.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1828 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1829 UploadInstance(_REMOTE, knee2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1830 UploadInstance(_REMOTE, other)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1831 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1832 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1833 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1834
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1835 DropOrthanc(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1836 DropOrthanc(_LOCAL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1837 InstallLuaScript('Lua/AutoroutingModification.lua')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1838 UploadInstance(_REMOTE, knee1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1839 WaitEmpty(_REMOTE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1840 UninstallLuaCallbacks()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1841 i = DoGet(_LOCAL, '/instances')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1842 self.assertEqual(1, len(i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1843
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1844 with tempfile.NamedTemporaryFile(delete = True) as f:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1845 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0]))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1846 f.flush()
45
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 44
diff changeset
1847 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ])
15
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1848 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1849 self.assertEqual(None, re.search('"MilitaryRank"', routed))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 14
diff changeset
1850 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag
17
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1851
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1852
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1853 def test_storescu_rf(self):
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1854 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID']
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1855 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1856 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain')
7c8500991a12 karsten
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 15
diff changeset
1857 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
18
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1858
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1859
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1860 def test_anonymize_instance(self):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1861 def AnonymizeAndUpload(instanceId, parameters):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1862 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1863 'application/json'), 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1864
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1865 def ModifyAndUpload(instanceId, parameters):
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1866 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1867 'application/json'), 'application/dicom')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1868
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1869 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1870 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1871 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1872 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1873 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1874 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1875
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1876 b = AnonymizeAndUpload(a, '{}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1877 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1878 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1879
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1880 # Keep private tag (only OK since Orthanc 0.8.0)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1881 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1882 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1883 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1884
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1885 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1886 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1887 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1888
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1889 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1890 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1891 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello'))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1892
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1893 # Examples from the Wiki
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1894 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1895 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1896 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1897 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1898 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1899 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1900 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1901 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1902 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1903
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1904 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1905 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1906 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1907 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1908 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1909 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1910 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1911
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1912 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1913 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1914 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1915 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1916 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1917 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1918 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1919
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1920
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1921 # Test modify non-existing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1922 i = DoPost(_REMOTE, '/tools/create-dicom',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1923 json.dumps({
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1924 'PatientName' : 'Jodogne',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1925 'Modality' : 'CT',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1926 }))['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1927
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1928 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1929 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1930 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1931
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1932 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}')
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1933 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1934 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1935 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
1936
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1937
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1938 def test_incoming_jpeg(self):
61
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1939 def storescu(image, acceptUnknownSopClassUid):
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1940 if acceptUnknownSopClassUid:
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1941 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ]
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1942 else:
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1943 tmp = [ '-xs' ]
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1944
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1945 with open(os.devnull, 'w') as FNULL:
61
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1946 subprocess.check_call([ FindExecutable('storescu') ] + tmp +
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1947 [ _REMOTE['Server'], str(_REMOTE['DicomPort']),
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1948 GetDatabasePath(image) ],
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1949 stderr = FNULL)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1950
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1951 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1952 InstallLuaScript('Lua/TransferSyntaxDisable.lua')
61
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1953 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False))
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1954 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True))
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1955 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1956 InstallLuaScript('Lua/TransferSyntaxEnable.lua')
62
f9c4ce95756f removal of useless information
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
1957 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')")
61
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1958 storescu('Knix/Loc/IM-0001-0001.dcm', False)
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1959 storescu('UnknownSopClassUid.dcm', True)
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 60
diff changeset
1960 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1961
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1962
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1963 def test_storescu_jpeg(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1964 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1965
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1966 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0'
64
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
1967 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID']
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
1968
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
1969 # This is JPEG lossless
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
1970 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID'])
369e439cdfd6 test access header
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 63
diff changeset
1971
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1972 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1973 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm')
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1974
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1975 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1976 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1977 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1978 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ])
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1979 self.assertEqual(5, len(DoGet(_LOCAL, '/instances')))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1980
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1981 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1982
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1983 DropOrthanc(_REMOTE)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1984 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports']))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1985
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1986
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1987 def test_pixel_data(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1988 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1989 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1990 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1991
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1992 phenixSize = 358 * 512 * 2
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1993 colorSize = 1000 * 1000 * 3
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1994 jpegSize = 51918
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1995
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1996 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1997 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1998 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
1999
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2000 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2001 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2002
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2003 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2004 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2005
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2006
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2007 def test_decode_brainix(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2008 brainix = [
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2009 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2010 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2011 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2012 ]
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2013 h = '6fb11b932d535c2be04beabd99793ff8'
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2014 maxValue = 426.0
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2015
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2016 truth = Image.open(GetDatabasePath('Formats/Brainix.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2017 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2018 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2019 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2020
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2021 truth2 = map(lambda x: min(255, x), truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2022 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2023 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2024
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2025 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2026 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2027 self.AssertSameImages(truth2, '/instances/%s/preview' % i)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2028
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2029 for i in brainix:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2030 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2031
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2032
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2033 def test_decode_color(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2034 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2035 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2036
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2037 for i in [ imagej, color ]:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2038 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]:
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2039 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2040
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2041 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2042 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2043
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2044 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2045 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2046
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2047
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2048 def test_decode_rf(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2049 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2050 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2051
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2052 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2053 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2054 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2055 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2056
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2057 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2058
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2059
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2060 def test_decode_multiframe(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2061 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2062
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2063 # Test the first frame
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2064 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2065 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2066 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2067 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2068 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2069 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf)))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2070
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2071 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2072
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2073 # Test the last frame
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2074 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2075 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2076
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2077
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2078 def test_decode_signed(self):
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2079 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID']
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2080 minValue = -2000
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2081 maxValue = 4042
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2082
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2083 truth = Image.open(GetDatabasePath('Formats/SignedCT.png'))
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2084 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2085
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2086 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2087 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2088
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2089 truth3 = map(lambda x: 255 if x >= 256 else x, truth2)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2090 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2091
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2092 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata())
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2093 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2094 self.AssertSameImages(tmp, '/instances/%s/preview' % signed)
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2095
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 18
diff changeset
2096 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed)))
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2097
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2098
46
85b2e36ed392 explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 45
diff changeset
2099 def test_googlecode_issue_32(self):
92
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2100 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/tools/default-encoding', 'nope'))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2101 self.assertEqual('Windows1251', DoPut(_REMOTE, '/tools/default-encoding', 'Windows1251'))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2102 self.assertEqual('Windows1251', DoGet(_REMOTE, '/tools/default-encoding'))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2103
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2104 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2105 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2106 self.assertEqual(u'Рентгенография', tags['SeriesDescription'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2107 self.assertEqual(u'Таз', tags['BodyPartExamined'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2108 self.assertEqual(u'Прямая', tags['ViewPosition'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2109
92
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2110 # Replay the same test using Latin1 as default encoding: This must fail
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2111 self.assertEqual('Latin1', DoPut(_REMOTE, '/tools/default-encoding', 'Latin1'))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2112
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2113 DoDelete(_REMOTE, '/instances/%s' % f)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2114 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID']
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2115 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2116 self.assertNotEqual(u'Рентгенография', tags['SeriesDescription'])
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2117
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
2118
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2119 def test_encodings(self):
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2120 # Latin-1 (ISO_IR 100)
22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2121 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID']
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2122 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
2123 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription'])
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2124
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2125 # Latin-2 (ISO_IR 101)
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2126 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID']
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2127 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a)
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2128 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format -
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2129 self.assertEqual('Imię i Nazwisko osoby opisującej',
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2130 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8'))
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 22
diff changeset
2131
26
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2132
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2133 def test_storescu_custom_aet(self):
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2134 # This tests a feature introduced in Orthanc 0.9.1: "Custom
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2135 # setting of the local AET during C-Store SCU (both in Lua and
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2136 # in the REST API)."
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2137 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2138
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2139 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2140
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2141 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2142 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2143 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2144
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2145 j = DoPost(_REMOTE, '/modalities/orthanctest/store', {
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2146 'LocalAet' : 'YOP',
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2147 'Resources' : [ a['ID'], b['ID'] ]
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2148 })
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2149
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2150 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2151 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID']))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2152
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2153 DropOrthanc(_LOCAL)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2154 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2155
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2156 j = DoPost(_REMOTE, '/modalities/orthanctest/store', {
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2157 'Resources' : [ c['ID'] ]
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2158 })
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2159
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2160 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2161 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID']))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2162
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2163 DropOrthanc(_REMOTE)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2164 DropOrthanc(_LOCAL)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2165
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2166 InstallLuaScript('Lua/AutoroutingChangeAet.lua')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2167 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2168
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2169 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2170 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2171 WaitEmpty(_REMOTE)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2172 self.assertEqual(1, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2173 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID']))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2174
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2175 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2176 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2177 WaitEmpty(_REMOTE)
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2178 self.assertEqual(2, len(DoGet(_LOCAL, '/instances')))
040f6ef1394a test_storescu_custom_aet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
2179 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID']))
34
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2180
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2181 def test_resources_since_limit(self):
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2182 # Upload 16 instances
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2183 for i in range(4):
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2184 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2185 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2186 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2187 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2188
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2189 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2190 self.assertEqual(2, len(DoGet(_REMOTE, '/studies')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2191 self.assertEqual(4, len(DoGet(_REMOTE, '/series')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2192 self.assertEqual(16, len(DoGet(_REMOTE, '/instances')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2193
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2194 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2195 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2196
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2197 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2198 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2199 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2200 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2201 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2202 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2203 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2204 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2205 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2206 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2207 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2208 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2209 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2210 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2211 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100')))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2212
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2213 for limit in [ 1, 2, 3, 7, 16, 17 ]:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2214 s = {}
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2215 since = 0
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2216 while True:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2217 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2218 if len(t) == 0:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2219 break
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2220
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2221 since += len(t)
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2222 for i in t:
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2223 s[i] = None
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2224
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2225 self.assertEqual(16, len(s))
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2226 for instance in DoGet(_REMOTE, '/instances'):
1047d7bc5210 test limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 28
diff changeset
2227 self.assertTrue(instance in s)
36
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2228
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2229
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2230 def test_create_pdf(self):
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2231 # Upload 4 instances
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2232 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2233 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2234 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2235 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2236
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2237 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0'
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2238 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988'
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2239 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8'
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2240
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2241 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f:
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2242 pdf = f.read()
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2243
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2244 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2245 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2246 'Tags' : {
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2247 'PatientName' : 'Jodogne',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2248 'Modality' : 'CT',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2249 },
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2250 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2251 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2252
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2253 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2254 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip())
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2255
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2256 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2257 self.assertEqual(len(b), len(pdf) + 1)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2258 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0'))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2259
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2260 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2261 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2262 'Parent' : brainixPatient,
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2263 'Tags' : {
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2264 'PatientName' : 'Jodogne',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2265 }
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2266 })))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2267
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2268 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2269 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2270 'Parent' : brainixPatient,
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2271 'Tags' : { 'StudyDescription' : 'PDF^Patient' },
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2272 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2273 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2274
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2275 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2276
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2277 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2278 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2279 'Parent' : brainixStudy,
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2280 'Tags' : { 'SeriesDescription' : 'PDF^Study' },
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2281 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2282 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2283
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2284 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2285
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2286 i = DoPost(_REMOTE, '/tools/create-dicom',
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2287 json.dumps({
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2288 'Parent' : brainixEpi,
37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 36
diff changeset
2289 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' },
36
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2290 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf)
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2291 }))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2292
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2293 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2294
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2295 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID'])
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2296 self.assertEqual(len(b), len(pdf))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2297 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf))
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2298
42ad759ef40a test PDF embedding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 34
diff changeset
2299 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance))
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2300
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2301
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2302 def test_create_series(self):
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2303 i = DoPost(_REMOTE, '/tools/create-dicom',
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2304 json.dumps({
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2305 'Tags' : {
40
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2306 'SpecificCharacterSet' : 'ISO_IR 100',
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2307 'PatientName' : 'Sébastien Jodogne',
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2308 'Modality' : 'CT',
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2309 },
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2310 'Content' : [
40
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2311 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2312 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2313 'Tags' : { 'ImageComments' : 'Tutu' }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2314 },
38
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2315 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=',
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2316 ]
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2317 }))
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2318
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2319 s = DoGet(_REMOTE, i['Path'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2320 self.assertEqual('Series', s['Type'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2321 self.assertEqual(s['ID'], i['ID'])
d147e36c6d18 test_create_series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 37
diff changeset
2322 self.assertEqual(2, len(s['Instances']))
39
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 38
diff changeset
2323 self.assertEqual(2, s['ExpectedNumberOfInstances'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 38
diff changeset
2324 self.assertEqual('Complete', s['Status'])
40
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2325
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2326 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2327 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2328 self.assertTrue('ImageComments' in a or 'ImageComments' in b)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2329 if 'ImageComments' in a:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2330 self.assertEqual('Tutu', a['ImageComments'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2331 else:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2332 self.assertEqual('Tutu', b['ImageComments'])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2333
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2334 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0])
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2335 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'),
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 39
diff changeset
2336 'Sébastien Jodogne')
47
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2337
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2338
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2339 def test_create_binary(self):
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2340 binary = ''.join(map(chr, range(256)))
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2341 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary)
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2342 tags = {
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2343 'PatientName' : 'Jodogne',
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2344 '8899-8899' : encoded
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2345 }
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2346
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2347 i = DoPost(_REMOTE, '/tools/create-dicom',
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2348 json.dumps({
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2349 'Tags' : tags
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2350 }))
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2351
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2352 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2353 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip())
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2354
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2355 i = DoPost(_REMOTE, '/tools/create-dicom',
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2356 json.dumps({
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2357 'InterpretBinaryTags' : False,
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2358 'Tags' : tags
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2359 }))
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2360
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2361 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip())
f610491f74c3 test_create_binary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 46
diff changeset
2362 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1])
48
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2363
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2364
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2365 def test_patient_ids_collision(self):
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2366 # Upload 3 instances from 3 different studies, but with the
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2367 # same PatientID
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2368 for i in range(3):
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2369 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2370
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2371 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2372 'Query' : { 'PatientName' : '*' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2373 self.assertEqual(1, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2374 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2375
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2376 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2377 'CaseSensitive' : True,
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2378 'Query' : { 'PatientName' : 'FOO\\HELLO' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2379 self.assertEqual(2, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2380
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2381 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2382 'CaseSensitive' : False,
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2383 'Query' : { 'PatientName' : 'Foo' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2384 self.assertEqual(1, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2385 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2386 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2387 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID'])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2388
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2389 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study',
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2390 'Query' : { 'PatientName' : '*' }})
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2391 self.assertEqual(3, len(a))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2392 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2393 self.assertTrue('FOO^SERIES' in d)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2394 self.assertTrue('HELLO^SERIES' in d)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2395 self.assertTrue('WORLD^SERIES' in d)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2396
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2397 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a)
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2398 self.assertEqual(1, len(set(d)))
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2399 self.assertEqual('COMMON', d[0])
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2400
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2401 for i in a:
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2402 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription']
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2403 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName']
e4352463ff74 test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
2404 self.assertEqual('%s^SERIES' % p, d)
49
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2405
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2406
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2407 def test_bitbucket_issue_4(self):
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2408 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2409 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2410 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2411 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2412 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2413 UploadInstance(_REMOTE, 'Formats/Rle.dcm')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2414
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2415 self.assertEqual(0, len(DoGet(_LOCAL, '/instances')))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2416 self.assertEqual(6, len(DoGet(_REMOTE, '/instances')))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2417
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2418 p = DoGet(_REMOTE, '/patients')
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2419 self.assertEqual(2, len(p))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2420 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0]))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2421 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1]))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2422 self.assertEqual(3, len(i1))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2423 self.assertEqual(3, len(i2))
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2424
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2425 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3])
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2426
e7f9b8199545 test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 48
diff changeset
2427 self.assertEqual(6, len(DoGet(_LOCAL, '/instances')))
50
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2428
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2429
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2430 def test_create_sequence(self):
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2431 i = DoPost(_REMOTE, '/tools/create-dicom',
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2432 json.dumps({
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2433 'Tags' : {
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2434 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2435 'PatientName': 'Jodogne^',
51
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2436 'ReferencedStudySequence': GenerateTestSequence(),
50
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2437 }
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2438 }))['ID']
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2439
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2440 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2441 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2442 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2443 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i))
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2444 self.assertEqual(u'Sébastien^'.encode('latin-1'),
8de63d56cf11 test_create_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 49
diff changeset
2445 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i))
51
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2446
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2447
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2448 def test_modify_sequence(self):
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2449 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2450 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i))
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2451
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2452 j = DoPost(_REMOTE, '/instances/%s/modify' % i,
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2453 json.dumps({
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2454 "Replace" : {
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2455 "PatientName" : "hello",
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2456 'ReferencedStudySequence': GenerateTestSequence(),
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2457 },
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2458 }),
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2459 'application/json')
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2460 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID']
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2461 DoDelete(_REMOTE, '/instances/%s' % i)
264a20a0276d test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2462
52
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2463 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j)))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2464
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2465
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2466 def test_compression(self):
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2467 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2468
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2469 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1]
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2470
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2471 # "StorageCompression" is enabled in the Orthanc to be tested,
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2472 # uncompress the data before running the test
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2473 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0:
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2474 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2475
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2476 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize']
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2477 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2478 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2479 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2480 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2481 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2482 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2483
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2484 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2485 self.assertTrue('compress' in ops)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2486 self.assertTrue('uncompress' in ops)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2487 self.assertTrue('is-compressed' in ops)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2488 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2489 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2490
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2491 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2492 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2493 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2494 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2495 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2496 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2497 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2498 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2499 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2500 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2501
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2502 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2503 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i)
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2504 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2505 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2506 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2507 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2508 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2509 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i))
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2510 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize'])
7c08e542db23 test_compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 51
diff changeset
2511 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'])
53
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2512
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2513
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2514 def test_ordered_slices(self):
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2515 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2516 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2517 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s)
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2518 self.assertEqual('Sequence', o['Type'])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2519 self.assertEqual(1, len(o['Dicom']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2520 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2521 self.assertEqual(76, len(o['Slices']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2522 for j in range(76):
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2523 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2524
68
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2525 self.assertEqual(1, len(o['SlicesShort']))
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2526 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2527 self.assertEqual(0, o['SlicesShort'][0][1])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2528 self.assertEqual(76, o['SlicesShort'][0][2])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2529
53
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2530 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2531 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2532 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2533 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2534 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s)
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2535
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2536 self.assertEqual('Volume', o['Type'])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2537 self.assertEqual(3, len(o['Dicom']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2538 self.assertEqual(3, len(o['Slices']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2539 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2540 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2541 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2542 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2543 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2544 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2545
68
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2546 self.assertEqual(3, len(o['SlicesShort']))
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2547 self.assertEqual(k, o['SlicesShort'][0][0])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2548 self.assertEqual(0, o['SlicesShort'][0][1])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2549 self.assertEqual(1, o['SlicesShort'][0][2])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2550 self.assertEqual(j, o['SlicesShort'][1][0])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2551 self.assertEqual(0, o['SlicesShort'][1][1])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2552 self.assertEqual(1, o['SlicesShort'][1][2])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2553 self.assertEqual(i, o['SlicesShort'][2][0])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2554 self.assertEqual(0, o['SlicesShort'][2][1])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2555 self.assertEqual(1, o['SlicesShort'][2][2])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2556
53
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2557 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2558 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2559 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2560 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s)
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2561
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2562 self.assertEqual('Sequence', o['Type'])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2563 self.assertEqual(2, len(o['Dicom']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2564 self.assertEqual(2, len(o['Slices']))
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2565 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2566 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2567 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0])
e0d1ee04119f test_ordered_slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 52
diff changeset
2568 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1])
54
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2569
68
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2570 self.assertEqual(2, len(o['SlicesShort']))
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2571 self.assertEqual(i, o['SlicesShort'][0][0])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2572 self.assertEqual(0, o['SlicesShort'][0][1])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2573 self.assertEqual(1, o['SlicesShort'][0][2])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2574 self.assertEqual(j, o['SlicesShort'][1][0])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2575 self.assertEqual(0, o['SlicesShort'][1][1])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2576 self.assertEqual(1, o['SlicesShort'][1][2])
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2577
a8d1a347a701 SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 67
diff changeset
2578
54
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2579
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2580 def test_incoming_movescu_accession(self):
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2581 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2582
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2583 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2584 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ])
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2585 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2586 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ])
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2587 self.assertEqual(0, len(DoGet(_LOCAL, '/patients')))
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2588 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ])
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2589 self.assertEqual(1, len(DoGet(_LOCAL, '/patients')))
c5f8a6b0d85e test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
2590
55
a395fd51cc4f test_dicom_to_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 54
diff changeset
2591
a395fd51cc4f test_dicom_to_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 54
diff changeset
2592 def test_dicom_to_json(self):
a395fd51cc4f test_dicom_to_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 54
diff changeset
2593 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
60
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2594 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID']
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2595
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2596 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2597 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f:
80
8466dbfcb22b fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 79
diff changeset
2598 self.assertTrue(CompareTags(t, json.loads(f.read()), [
8466dbfcb22b fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 79
diff changeset
2599 'ACR_NEMA_2C_VariablePixelDataGroupLength',
87
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2600 'GenericGroupLength',
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2601 'Original Image Filename',
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2602 'PET-CT Multi Modality Name'
80
8466dbfcb22b fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 79
diff changeset
2603 ]))
55
a395fd51cc4f test_dicom_to_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 54
diff changeset
2604
a395fd51cc4f test_dicom_to_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 54
diff changeset
2605 t = DoGet(_REMOTE, '/instances/%s/tags' % i)
a395fd51cc4f test_dicom_to_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 54
diff changeset
2606 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f:
87
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2607 self.assertTrue(CompareTags(t, json.loads(f.read()), [
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2608 '7fe0,0000',
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2609 '00e1,10c2',
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2610 '7053,1003'
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2611 ]))
55
a395fd51cc4f test_dicom_to_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 54
diff changeset
2612
60
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2613 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j)
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2614 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f:
80
8466dbfcb22b fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 79
diff changeset
2615 self.assertTrue(CompareTags(t, json.loads(f.read()), [
8466dbfcb22b fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 79
diff changeset
2616 ]))
60
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2617
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2618 t = DoGet(_REMOTE, '/instances/%s/tags' % j)
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2619 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f:
cd3c7f70f139 test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
2620 a = json.loads(f.read())
65
09fc27e0899a patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
2621 aa = json.dumps(a).replace('2e+022', '2e+22')
09fc27e0899a patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
2622 tt = json.dumps(t).replace('2e+022', '2e+22')
09fc27e0899a patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 64
diff changeset
2623 self.assertEqual(aa, tt)
57
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2624
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2625
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2626 def test_batch_archive(self):
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2627 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2628 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2629 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2630 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2631 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2632 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2633 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2634 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm')
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2635
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2636 s = DoPost(_REMOTE, '/tools/create-archive', [ ])
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2637 z = zipfile.ZipFile(StringIO(s), "r")
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2638 self.assertEqual(0, len(z.namelist()))
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2639
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2640 # One patient
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2641 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ])
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2642 z = zipfile.ZipFile(StringIO(s), "r")
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2643 self.assertEqual(4, len(z.namelist()))
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2644
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2645 # One patient + twice its study + one series from other patient
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2646 s = DoPost(_REMOTE, '/tools/create-archive', [
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2647 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17',
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2648 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918',
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2649 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0'
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2650 ])
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2651 z = zipfile.ZipFile(StringIO(s), "r")
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2652 self.assertEqual(6, len(z.namelist()))
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2653
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2654 # One patient + one series + one instance
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2655 s = DoPost(_REMOTE, '/tools/create-archive', [
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2656 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17',
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2657 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0',
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2658 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87'
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2659 ])
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2660 z = zipfile.ZipFile(StringIO(s), "r")
784a544706cf test_batch_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 56
diff changeset
2661 self.assertEqual(7, len(z.namelist()))
59
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2662
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2663
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2664 def test_decode_brainix_as_jpeg(self):
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2665 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID']
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2666
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2667 j = GetImage(_REMOTE, '/instances/%s/preview' % i)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2668 self.assertEqual('PNG', j.format)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2669 self.assertEqual(j.size[0], 256)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2670 self.assertEqual(j.size[1], 256)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2671
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2672 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' })
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2673 self.assertEqual('PNG', j.format)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2674
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2675 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' })
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2676 self.assertEqual('PNG', j.format)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2677
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2678 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' })
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2679 self.assertEqual('PNG', j.format)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2680
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2681 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2682 self.assertEqual('JPEG', j.format)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2683 self.assertEqual(j.size[0], 256)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2684 self.assertEqual(j.size[1], 256)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2685
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2686 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' }))
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2687 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }))
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2688 self.assertLess(a, b)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2689
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2690 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' })
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2691 self.assertEqual('JPEG', j.format)
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2692
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2693 # 16bit encoding is not supported with JPEG
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2694 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' }))
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2695 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' }))
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2696
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2697 # No matching content type
84378ada15ab test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 58
diff changeset
2698 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' }))
69
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2699
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2700
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2701
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2702 def test_media_encodings(self):
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2703 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID']
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2704 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID']
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2705 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID']
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2706
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2707 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2])
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2708 z = zipfile.ZipFile(StringIO(tmp), "r")
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2709
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2710 self.assertEqual(4, len(z.namelist()))
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2711 self.assertTrue('IMAGES/IM0' in z.namelist())
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2712 self.assertTrue('IMAGES/IM1' in z.namelist())
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2713 self.assertTrue('IMAGES/IM2' in z.namelist())
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2714 self.assertTrue('DICOMDIR' in z.namelist())
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2715
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2716 try:
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2717 os.remove('/tmp/DICOMDIR')
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2718 except:
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2719 # The file does not exist
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2720 pass
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2721
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2722 z.extract('DICOMDIR', '/tmp')
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2723 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ],
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2724 stderr = subprocess.STDOUT).split('\n')
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2725
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2726 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ],
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2727 stderr = subprocess.STDOUT).split('\n')
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2728 self.assertEqual(1, len(a))
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2729 self.assertEqual('', a[0])
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2730
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2731 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ])
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2732 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None)
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2733 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None)
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2734 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None)
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2735
83fd88230097 test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 68
diff changeset
2736 os.remove('/tmp/DICOMDIR')
71
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2737
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2738
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2739 def test_findscu_counters(self):
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2740 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm')
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2741 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm')
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2742 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm')
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2743
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2744 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2745 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2746 self.assertEqual(1, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2747 self.assertTrue('1 ' in s)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2748
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2749 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2750 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2751 self.assertEqual(1, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2752 self.assertTrue('2 ' in s)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2753
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2754 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2755 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2756 self.assertEqual(1, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2757 self.assertTrue('3 ' in s)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2758
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2759 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2760 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2761 self.assertEqual(1, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2762 self.assertTrue('2 ' in s)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2763
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2764 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2765 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2766 self.assertEqual(1, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2767 self.assertTrue('3 ' in s)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2768
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2769 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2770 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2771 self.assertEqual(2, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2772 self.assertTrue('1 ' in s)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2773 self.assertTrue('2 ' in s)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2774
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2775 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2776 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2777 self.assertEqual(1, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2778 t = map(lambda x: x.strip(), s[0].split('\\'))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2779 self.assertTrue('PT' in t)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2780 self.assertTrue('CT' in t)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2781
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2782 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ])
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2783 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2784 self.assertEqual(1, len(s))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2785 t = map(lambda x: x.strip(), s[0].split('\\'))
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2786 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2787 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t)
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2788
48740070cbf1 TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 70
diff changeset
2789
78
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2790 def test_decode_transfer_syntax(self):
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2791 def Check(t, md5):
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2792 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID']
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2793
89
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
2794 if t != '1.2.840.10008.1.2': # This file has no meta header
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
2795 transferSyntax = DoGet(_REMOTE, '/instances/%s/metadata/TransferSyntax' % i)
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
2796 self.assertEqual(t, transferSyntax)
74b7b9aed5f8 test TransferSyntax metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
2797
78
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2798 if md5 == None:
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2799 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i))
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2800 else:
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2801 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i))
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2802 self.assertEqual(m, md5)
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2803
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2804 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2805 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2806 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2807 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2808 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2809 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2810 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2811 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2812 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2813 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b')
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2814 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported
b89af51797ff test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 74
diff changeset
2815 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported
79
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2816
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2817
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2818 def test_raw_frame(self):
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2819 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID']
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2820 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s)))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2821 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2822 self.assertEqual(512 * 512 * 2, len(a))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2823 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s)))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2824 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2825 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2826
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2827 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID']
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2828 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s)))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2829 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s)))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2830 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s)))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2831 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2832 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2833 self.assertEqual("L", im.mode)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2834 self.assertEqual(512, im.size[0])
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2835 self.assertEqual(512, im.size[1])
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2836
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2837 # Test an image with 2 JPEG frames spread over multiple fragments
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2838 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID']
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2839 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s)))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2840 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2841 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2842 self.assertEqual(69214, len(a))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2843 self.assertEqual(ComputeMD5(a), ComputeMD5(b))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2844 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s))
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2845 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2846 self.assertEqual("RGB", im.mode)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2847 self.assertEqual(512, im.size[0])
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2848 self.assertEqual(512, im.size[1])
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2849 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2850 self.assertEqual("RGB", im.mode)
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2851 self.assertEqual(512, im.size[0])
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 78
diff changeset
2852 self.assertEqual(512, im.size[1])
81
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2853
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2854
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2855
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2856 def test_rest_movescu(self):
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2857 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2858
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2859 # Upload 4 instances
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2860 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2861 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm')
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2862 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2863 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2864
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2865 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2866 for p in DoGet(_REMOTE, '/patients'):
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2867 DoPost(_REMOTE, '/modalities/orthanctest/store', p)
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2868 DoDelete(_REMOTE, '/patients/%s' % p)
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2869
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2870 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2871
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2872 # Upload instance Brainix/Flair/IM-0001-0001.dcm
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2873 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2874 'Resources' : [
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2875 {
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2876 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2877 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2878 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2879 }
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2880 ]})
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2881
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2882 # Upload series Brainix/Flair/*
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2883 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2884 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2885 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2886 self.assertEqual(1, len(DoGet(_REMOTE, '/instances')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2887
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2888 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2889 'Resources' : [
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2890 {
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2891 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2892 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2893 }
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2894 ]})
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2895 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2896 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2897 self.assertEqual(1, len(DoGet(_REMOTE, '/series')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2898 self.assertEqual(2, len(DoGet(_REMOTE, '/instances')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2899
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2900 # Upload series Brainix/Epi/*
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2901 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2902 'Resources' : [
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2903 {
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2904 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2905 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2906 }
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2907 ]})
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2908 self.assertEqual(1, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2909 self.assertEqual(1, len(DoGet(_REMOTE, '/studies')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2910 self.assertEqual(2, len(DoGet(_REMOTE, '/series')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2911 self.assertEqual(3, len(DoGet(_REMOTE, '/instances')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2912
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2913 # Upload study Knee/*
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2914 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2915 'Resources' : [
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2916 {
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2917 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2918 }
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2919 ]})
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2920 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2921 self.assertEqual(2, len(DoGet(_REMOTE, '/studies')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2922 self.assertEqual(3, len(DoGet(_REMOTE, '/series')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2923 self.assertEqual(4, len(DoGet(_REMOTE, '/instances')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2924
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2925 # Reset
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2926 for p in DoGet(_REMOTE, '/patients'):
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2927 DoDelete(_REMOTE, '/patients/%s' % p)
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2928
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2929 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2930
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2931
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2932 # Upload all at once
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2933 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2934 'Resources' : [
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2935 {
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2936 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2937 },
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2938 {
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2939 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775',
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2940 }
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2941 ]})
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2942 self.assertEqual(2, len(DoGet(_REMOTE, '/patients')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2943 self.assertEqual(2, len(DoGet(_REMOTE, '/studies')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2944 self.assertEqual(3, len(DoGet(_REMOTE, '/series')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2945 self.assertEqual(4, len(DoGet(_REMOTE, '/instances')))
5920954287dd test_rest_movescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
2946
86
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2947
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2948
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2949 def test_reconstruct_json(self):
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2950 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2951
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2952 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2953 first = DoGet(_REMOTE, '/instances/%s/tags' % instance)
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2954
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2955 self.assertEqual('TWINOW', first['0008,1010']['Value'])
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2956 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance)))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2957
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2958 # Cannot delete the "DICOM" attachment
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2959 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2960
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2961 # Can delete the "DICOM as JSON" attachment
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2962 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2963 self.assertTrue(type(r) is dict and len(r) == 0)
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2964
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2965 # Only the "DICOM" attachment subsists
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2966 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance)))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2967
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2968 # Cannot manually reconstruct the "DICOM as JSON" attachment
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2969 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello'))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2970
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2971 # Transparently reconstruct the "DICOM as JSON" attachment
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2972 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2973 second = DoGet(_REMOTE, '/instances/%s/tags' % instance)
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2974 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance)))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2975
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2976 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance)
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2977 self.assertEqual(str(first), str(second))
0401ef51f5c1 test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 83
diff changeset
2978 self.assertEqual(str(first), str(third))
87
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2979
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2980
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2981 def test_reconstruct_json2(self):
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2982 self.assertEqual(0, len(DoGet(_REMOTE, '/patients')))
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2983
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2984 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID']
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2985 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID']
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2986
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2987 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName'])
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2988 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName'])
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2989
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2990 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a)))
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2991 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b)))
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2992
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2993 DoPost(_REMOTE, '/tools/invalidate-tags', '', 'text/plain')
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2994
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2995 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % a)))
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2996 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % b)))
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2997
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2998 self.assertEqual('BRAINIX', DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)['PatientName'])
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
2999 self.assertEqual('KNEE', DoGet(_REMOTE, '/instances/%s/tags?simplify' % b)['PatientName'])
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3000
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3001 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % a)))
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3002 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % b)))
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3003
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3004
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3005 def test_private_tags(self):
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3006 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID']
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3007 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3008 self.assertEqual('1.2.840.113704.1.111.6320.1342451261.21', t['PET-CT Multi Modality Name'])
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3009 self.assertEqual('p37s0_na_ctac.img', t['Original Image Filename'])
4b24faec842b test_reconstruct_json2 + test_private_tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 86
diff changeset
3010
92
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3011
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3012 def test_findscu_encoding(self):
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3013 # Check out ../Database/Encodings/Generate.sh
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3014 TEST = u'Test-éüäöòДΘĝדصķћ๛ネİ'
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3015 ENCODINGS = {
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3016 'Arabic' : [ 'ISO_IR 127' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3017 'Ascii' : [ 'ISO_IR 6' ], # More accurately, ISO 646
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3018 'Cyrillic' : [ 'ISO_IR 144' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3019 'Greek' : [ 'ISO_IR 126' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3020 'Hebrew' : [ 'ISO_IR 138' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3021 'Japanese' : [ 'ISO_IR 13', 'shift-jis' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3022 'Latin1' : [ 'ISO_IR 100' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3023 'Latin2' : [ 'ISO_IR 101' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3024 'Latin3' : [ 'ISO_IR 109' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3025 'Latin4' : [ 'ISO_IR 110' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3026 'Latin5' : [ 'ISO_IR 148' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3027 'Thai' : [ 'ISO_IR 166', 'tis-620' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3028 'Utf8' : [ 'ISO_IR 192' ],
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3029 }
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3030
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3031 for name in ENCODINGS.iterkeys():
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3032 if len(ENCODINGS[name]) == 1:
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3033 ENCODINGS[name].append(name.lower())
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3034
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3035 UploadInstance(_REMOTE, 'Encodings/Lena-utf8.dcm')
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3036
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3037 for name in ENCODINGS.iterkeys():
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3038 self.assertEqual(name, DoPut(_REMOTE, '/tools/default-encoding', name))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3039 self.assertEqual(name, DoGet(_REMOTE, '/tools/default-encoding'))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3040
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3041 i = CallFindScu([ '-k', '0008,0052=STUDY',
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3042 '-k', 'SpecificCharacterSet',
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3043 '-k', 'PatientName' ])
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3044
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3045 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3046 self.assertEqual(1, len(characterSet))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3047 self.assertEqual(ENCODINGS[name][0], characterSet[0].strip())
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3048
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3049 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3050 self.assertEqual(1, len(patientName))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3051
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3052 expected = TEST.encode(ENCODINGS[name][1], 'ignore')
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3053 self.assertEqual(expected, patientName[0].strip())
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3054
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3055
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3056 #for master in ENCODINGS:
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3057 for master in [ 'Latin1', 'Utf8', 'Cyrillic' ]: # Shortcut to speedup tests
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3058 self.assertEqual(master, DoPut(_REMOTE, '/tools/default-encoding', master))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3059 self.assertEqual(master, DoGet(_REMOTE, '/tools/default-encoding'))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3060
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3061 for name in ENCODINGS:
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3062 DropOrthanc(_REMOTE)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3063 UploadInstance(_REMOTE, 'Encodings/Lena-%s.dcm' % ENCODINGS[name][1])
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3064
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3065 i = CallFindScu([ '-k', '0008,0052=STUDY',
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3066 '-k', 'PatientID',
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3067 '-k', 'SpecificCharacterSet',
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3068 '-k', 'PatientName' ])
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3069 i = i.decode(ENCODINGS[master][1])
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3070
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3071 characterSet = re.findall('\(0008,0005\).*?\[(.*?)\]', i)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3072 self.assertEqual(1, len(characterSet))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3073 self.assertEqual(ENCODINGS[master][0], characterSet[0].strip())
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3074
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3075 patientId = re.findall('\(0010,0020\).*?\[(.*?)\]', i)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3076 self.assertEqual(1, len(patientId))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3077 self.assertEqual(ENCODINGS[name][1], patientId[0].strip())
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3078
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3079 patientName = re.findall('\(0010,0010\).*?\[(.*?)\]', i)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3080 self.assertEqual(1, len(patientName))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3081
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3082 tmp = ENCODINGS[name][1]
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3083 expected = TEST.encode(tmp, 'ignore').decode(tmp)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3084 tmp = ENCODINGS[master][1]
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3085 expected = expected.encode(tmp, 'ignore').decode(tmp)
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3086
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3087 self.assertEqual(expected, patientName[0].strip())
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3088
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3089
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3090 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True,
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3091 'Level' : 'Study',
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3092 'Query' : { }})
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3093 self.assertEqual(1, len(a))
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3094
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3095 tmp = ENCODINGS[name][1]
dbcbffb889da test_findscu_encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 89
diff changeset
3096 self.assertEqual(TEST.encode(tmp, 'ignore').decode(tmp), a[0]["PatientMainDicomTags"]["PatientName"])
96
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3097
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3098
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3099 def test_reconstruct(self):
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3100 def CompareMainDicomTag(expected, instance, level, tag):
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3101 self.assertEqual(expected, DoGet(_REMOTE, '/instances/%s/%s' % (instance, level))['MainDicomTags'][tag].strip())
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3102
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3103 a = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID']
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3104
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3105 studies = DoGet(_REMOTE, '/studies/')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3106 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/')))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3107 self.assertEqual(1, len(studies))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3108 self.assertEqual(1, len(DoGet(_REMOTE, '/series/')))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3109 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/')))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3110
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3111 modified = DoPost(_REMOTE, '/studies/%s/modify' % studies[0], {
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3112 "Replace" : {
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3113 "StudyDescription" : "hello",
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3114 "SeriesDescription" : "world",
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3115 "SOPClassUID" : "test",
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3116 "SOPInstanceUID" : "myid",
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3117 },
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3118 "Keep" : [ "StudyInstanceUID", "SeriesInstanceUID" ]
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3119 })
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3120
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3121 instances = DoGet(_REMOTE, '/instances/')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3122 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/')))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3123 self.assertEqual(1, len(DoGet(_REMOTE, '/studies/')))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3124 self.assertEqual(1, len(DoGet(_REMOTE, '/series/')))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3125 self.assertEqual(2, len(instances))
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3126
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3127 b = instances[0] if instances[1] == a else instances[1]
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3128
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3129 CompareMainDicomTag('Knee (R)', a, 'study', 'StudyDescription')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3130 CompareMainDicomTag('AX. FSE PD', a, 'series', 'SeriesDescription')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3131 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3132 CompareMainDicomTag('myid', b, '', 'SOPInstanceUID')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3133 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % a).strip())
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3134 self.assertEqual('test', DoGet(_REMOTE, '/instances/%s/metadata/SopClassUid' % b).strip())
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3135
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3136 DoPost(_REMOTE, '/instances/%s/reconstruct' % b, {})
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3137
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3138 CompareMainDicomTag('hello', a, 'study', 'StudyDescription')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3139 CompareMainDicomTag('world', a, 'series', 'SeriesDescription')
272d1229cb49 test reconstruction of tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 95
diff changeset
3140 CompareMainDicomTag('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', a, '', 'SOPInstanceUID')
102
9671578fd4d3 added tests for Lua HttpPost/Put/Get/Delete methods
amazy
parents: 100
diff changeset
3141
104
7530eb50c3c4 renamed HttpPost.lua into HttpClient.lua + fix tests
amazy
parents: 102
diff changeset
3142 def test_httpClient_lua(self):
7530eb50c3c4 renamed HttpPost.lua into HttpClient.lua + fix tests
amazy
parents: 102
diff changeset
3143 with open(GetDatabasePath('Lua/HttpClient.lua'), 'r') as f:
102
9671578fd4d3 added tests for Lua HttpPost/Put/Get/Delete methods
amazy
parents: 100
diff changeset
3144 result = DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua')
9671578fd4d3 added tests for Lua HttpPost/Put/Get/Delete methods
amazy
parents: 100
diff changeset
3145
9671578fd4d3 added tests for Lua HttpPost/Put/Get/Delete methods
amazy
parents: 100
diff changeset
3146 self.assertIn('OK', result)
107
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3147
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3148
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3149 def test_bitbucket_issue_44(self):
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3150 # https://bitbucket.org/sjodogne/orthanc/issues/44/bad-interpretation-of-photometric
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3151 UploadInstance(_REMOTE, 'Issue44/Monochrome1.dcm')
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3152 UploadInstance(_REMOTE, 'Issue44/Monochrome2.dcm')
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3153
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3154 # dcmcjpeg +ua +eb Monochrome1.dcm Monochrome1-Jpeg.dcm
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3155 UploadInstance(_REMOTE, 'Issue44/Monochrome1-Jpeg.dcm')
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3156
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3157 # dcmcjpeg +ua Monochrome1.dcm Monochrome1-JpegLS.dcm
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3158 UploadInstance(_REMOTE, 'Issue44/Monochrome1-JpegLS.dcm')
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3159
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3160 monochrome1 = 'bcdd600a-a6a9c522-5f0a6e84-8657c9f3-b76e59b7'
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3161 monochrome1_jpeg = '9df82121-208a2da8-0038674a-3d7a773b-b7008cd2'
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3162 monochrome1_jpegls = '0486d1a2-9165573f-b1976b20-e927b016-6b8d67ab'
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3163 monochrome2 = 'f00947b7-f61f7164-c93414d1-c6fbda6a-9e92ed20'
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3164
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3165 for i in [ monochrome1, monochrome1_jpeg, monochrome1_jpegls ]:
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3166 im = GetImage(_REMOTE, '/instances/%s/preview' % i)
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3167 self.assertEqual("L", im.mode)
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3168 self.assertEqual(2010, im.size[0])
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3169 self.assertEqual(2446, im.size[1])
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3170
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3171 # This is the chest image, with MONOCHROME1. Raw background is
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3172 # white (255), should be rendered as black (0) => invert
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3173 if i == monochrome1_jpeg:
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3174 # Add some tolerance because of JPEG destructive compression
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3175 self.assertGreater(10, im.getpixel((0,0)))
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3176 else:
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3177 self.assertEqual(0, im.getpixel((0,0)))
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3178
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3179 im = GetImage(_REMOTE, '/instances/%s/preview' % monochrome2)
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3180 self.assertEqual("L", im.mode)
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3181 self.assertEqual(1572, im.size[0])
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3182 self.assertEqual(2010, im.size[1])
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3183
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3184 # This is the key image, with MONOCHROME2. Raw background is
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3185 # white (255), should be rendered as white (255)
fddb35f7289d test_bitbucket_issue_44
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 104
diff changeset
3186 self.assertEqual(255, im.getpixel((0,0)))
111
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3187
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3188
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3189 def test_bitbucket_issue_42(self):
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3190 # https://bitbucket.org/sjodogne/orthanc/issues/42/fails-to-modify-a-dicom-video-file
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3191 # This test fails on DCMTK 3.6.0, but succeeds in DCMTK 3.6.1 snapshots
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3192 UploadInstance(_REMOTE, 'Issue42.dcm')['ID']
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3193 modified = DoPost(_REMOTE,
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3194 '/patients/da128605-e040d0c4-310615d2-3475da63-df2d1ef4/modify',
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3195 '{"Replace":{"PatientID":"Hello","PatientName":"Sample patient name"}}',
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3196 'application/json')
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3197 self.assertTrue('PatientID' in modified)
7005cdeeb704 test_bitbucket_issue_42
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 107
diff changeset
3198