Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 86:0401ef51f5c1
test_reconstruct_json
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 07 Nov 2016 15:17:19 +0100 |
parents | 3f2170efa8d2 |
children | 4b24faec842b |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
3 | 7 # Department, University Hospital of Liege, Belgium |
8 # | |
9 # This program is free software: you can redistribute it and/or | |
10 # modify it under the terms of the GNU General Public License as | |
11 # published by the Free Software Foundation, either version 3 of the | |
12 # License, or (at your option) any later version. | |
13 # | |
14 # This program is distributed in the hope that it will be useful, but | |
15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
17 # General Public License for more details. | |
18 # | |
19 # You should have received a copy of the GNU General Public License | |
20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
21 | |
22 | |
14 | 23 import tempfile |
3 | 24 import unittest |
36 | 25 import base64 |
3 | 26 |
11 | 27 from PIL import ImageChops |
3 | 28 from Toolbox import * |
13 | 29 from xml.dom import minidom |
3 | 30 |
31 _LOCAL = None | |
32 _REMOTE = None | |
33 | |
34 | |
35 def SetOrthancParameters(local, remote): | |
36 global _LOCAL, _REMOTE | |
37 _LOCAL = local | |
38 _REMOTE = remote | |
39 | |
40 | |
14 | 41 def ExtractDicomTags(rawDicom, tags): |
42 with tempfile.NamedTemporaryFile(delete = True) as f: | |
43 f.write(rawDicom) | |
44 f.flush() | |
45 | 45 data = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
14 | 46 |
47 result = [] | |
48 for tag in tags: | |
49 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
50 if match == None: | |
51 result.append('') | |
52 else: | |
53 result.append(match.group(1)) | |
54 | |
55 return result | |
56 | |
57 | |
15 | 58 def InstallLuaScript(path): |
59 with open(GetDatabasePath(path), 'r') as f: | |
60 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
61 | |
62 | |
63 def UninstallLuaCallbacks(): | |
64 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
43 | 65 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
15 | 66 |
67 | |
21
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68 def CompareLists(a, b): |
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69 if len(a) != len(b): |
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70 return False |
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71 |
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72 for i in range(len(a)): |
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73 d = a[i] - b[i] |
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74 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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75 return False |
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76 |
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77 return True |
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78 |
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79 |
80
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80 def CompareTags(a, b, tagsToIgnore): |
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81 for i in tagsToIgnore: |
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82 if i in a: |
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83 del a[i] |
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84 if i in b: |
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85 del b[i] |
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86 |
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87 return a == b |
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88 |
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89 |
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90 def CallFindScu(args): |
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91 p = subprocess.Popen([ FindExecutable('findscu'), |
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92 '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], |
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93 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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94 stderr=subprocess.PIPE) |
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95 return p.communicate()[1] |
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96 |
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97 |
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98 def CallMoveScu(args): |
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99 subprocess.check_call([ FindExecutable('movescu'), |
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100 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
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101 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) |
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102 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) |
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103 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
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104 stderr=subprocess.PIPE) |
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105 |
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106 |
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107 |
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108 def GenerateTestSequence(): |
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109 return [ |
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110 { |
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111 'StudyDescription': 'Hello^', |
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112 'ReferencedStudySequence' : [ |
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113 { |
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114 'StudyDescription': 'Toto', |
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115 }, |
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116 { |
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117 'StudyDescription': 'Tata', |
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118 }, |
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119 ] |
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120 }, |
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121 { |
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122 'StudyDescription': 'Sébastien^', |
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123 'StudyDate' : '19700202', |
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124 } |
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125 ] |
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126 |
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127 |
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128 |
15 | 129 |
3 | 130 class Orthanc(unittest.TestCase): |
131 def setUp(self): | |
83 | 132 if (sys.version_info >= (3, 0)): |
133 # Remove annoying warnings about unclosed socket in Python 3 | |
134 import warnings | |
135 warnings.simplefilter("ignore", ResourceWarning) | |
136 | |
3 | 137 DropOrthanc(_LOCAL) |
138 DropOrthanc(_REMOTE) | |
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139 UninstallLuaCallbacks() |
45 | 140 #print "In test", self._testMethodName |
44
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141 |
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142 def AssertSameImages(self, truth, url): |
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143 im = GetImage(_REMOTE, url) |
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144 self.assertTrue(CompareLists(truth, im.getdata())) |
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145 |
3 | 146 |
147 def test_system(self): | |
148 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
149 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
150 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
151 | |
152 def test_upload(self): | |
153 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
154 self.assertEqual('Success', u['Status']) | |
155 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
156 self.assertEqual('AlreadyStored', u['Status']) | |
157 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
158 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
159 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
160 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
161 | |
162 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
163 self.assertEqual('20070101', i['StudyDate']) | |
164 | |
165 | |
5 | 166 def test_upload_2(self): |
3 | 167 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
168 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
169 self.assertEqual(i, instance['ID']) | |
170 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
171 instance['MainDicomTags']['SOPInstanceUID']) | |
172 | |
173 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
174 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
175 series['MainDicomTags']['SeriesInstanceUID']) | |
176 | |
177 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
178 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
179 study['MainDicomTags']['StudyInstanceUID']) | |
180 | |
181 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
182 self.assertEqual('ozp00SjY2xG', | |
183 patient['MainDicomTags']['PatientID']) | |
184 | |
185 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
186 self.assertEqual(2472, len(dicom)) | |
187 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
188 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
189 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
190 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
191 | |
192 | |
5 | 193 def test_images(self): |
194 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
195 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 196 |
5 | 197 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
198 self.assertEqual("L", im.mode) | |
199 self.assertEqual(512, im.size[0]) | |
200 self.assertEqual(358, im.size[1]) | |
201 | |
202 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
203 self.assertEqual("L", im.mode) | |
204 self.assertEqual(512, im.size[0]) | |
205 self.assertEqual(358, im.size[1]) | |
206 | |
207 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
208 self.assertEqual(512, im.size[0]) | |
209 self.assertEqual(358, im.size[1]) | |
210 | |
211 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
212 self.assertEqual("L", im.mode) | |
213 self.assertEqual(512, im.size[0]) | |
214 self.assertEqual(358, im.size[1]) | |
215 | |
216 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
217 self.assertEqual("L", im.mode) | |
218 self.assertEqual(512, im.size[0]) | |
219 self.assertEqual(358, im.size[1]) | |
220 | |
221 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
222 self.assertEqual(512, im.size[0]) | |
223 self.assertEqual(358, im.size[1]) | |
64 | 224 |
225 # This is Little Endian Explicit | |
226 self.assertEqual('1.2.840.10008.1.2.1', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
227 | |
6 | 228 |
229 def test_hierarchy(self): | |
230 UploadFolder(_REMOTE, 'Brainix/Epi') | |
231 UploadFolder(_REMOTE, 'Brainix/Flair') | |
232 UploadFolder(_REMOTE, 'Knee/T1') | |
233 UploadFolder(_REMOTE, 'Knee/T2') | |
234 | |
235 p = DoGet(_REMOTE, '/patients') | |
236 s = DoGet(_REMOTE, '/studies') | |
237 t = DoGet(_REMOTE, '/series') | |
238 self.assertEqual(2, len(p)) | |
239 self.assertEqual(2, len(s)) | |
240 self.assertEqual(4, len(t)) | |
241 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
242 | |
243 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
244 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
245 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
246 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
247 | |
248 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
249 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
250 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
251 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
252 | |
253 self.assertTrue(brainixPatient in p) | |
254 self.assertTrue(kneePatient in p) | |
255 self.assertTrue(brainixStudy in s) | |
256 self.assertTrue(kneeStudy in s) | |
257 self.assertTrue(brainixEpi in t) | |
258 self.assertTrue(brainixFlair in t) | |
259 self.assertTrue(kneeT1 in t) | |
260 self.assertTrue(kneeT2 in t) | |
261 | |
262 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
263 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
264 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
265 | |
266 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
267 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
268 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
269 | |
270 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
271 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
272 | |
273 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
274 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
275 | |
276 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
277 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
278 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
279 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
280 | |
281 for patient in p: | |
282 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
283 self.assertEqual(patient, study['ParentPatient']) | |
284 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
285 self.assertEqual(study['ID'], series['ParentStudy']) | |
286 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
287 self.assertEqual(series['ID'], instance['ParentSeries']) | |
288 | |
289 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
290 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
291 | |
292 | |
293 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
294 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
295 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
296 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
297 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
298 self.assertEqual(None, r) | |
299 | |
300 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
301 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
302 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
303 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
304 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
305 self.assertEqual('Study', r['Type']) | |
306 self.assertEqual(kneeStudy, r['ID']) | |
307 | |
308 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
309 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
310 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
311 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
312 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
313 self.assertEqual('Series', r['Type']) | |
314 self.assertEqual(kneeT1, r['ID']) | |
315 | |
316 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
317 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
318 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
319 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
320 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
321 self.assertEqual(None, r) | |
322 | |
323 DropOrthanc(_REMOTE) | |
324 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
325 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 326 |
327 | |
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328 def test_multiframe(self): |
7 | 329 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
330 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
331 | |
332 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
333 self.assertEqual("L", im.mode) | |
334 self.assertEqual(512, im.size[0]) | |
335 self.assertEqual(512, im.size[1]) | |
336 | |
337 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
338 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
339 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
340 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
341 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
342 | |
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343 |
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344 def test_changes(self): |
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345 # Check emptiness |
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346 c = DoGet(_REMOTE, '/changes') |
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347 self.assertEqual(0, len(c['Changes'])) |
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348 self.assertEqual(0, c['Last']) |
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349 self.assertTrue(c['Done']) |
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350 c = DoGet(_REMOTE, '/changes?last') |
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351 self.assertEqual(0, len(c['Changes'])) |
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352 self.assertEqual(0, c['Last']) |
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353 self.assertTrue(c['Done']) |
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354 |
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355 # Add 1 instance |
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356 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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357 c = DoGet(_REMOTE, '/changes') |
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358 begin = c['Last'] |
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359 self.assertEqual(4, len(c['Changes'])) |
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360 self.assertTrue(c['Done']) |
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361 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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362 |
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363 c = DoGet(_REMOTE, '/changes?last') |
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364 self.assertEqual(1, len(c['Changes'])) |
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365 self.assertEqual(begin, c['Last']) |
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366 self.assertTrue(c['Done']) |
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367 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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368 self.assertEqual(1, len(c['Changes'])) |
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369 self.assertEqual(begin, c['Last']) |
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370 self.assertTrue(c['Done']) |
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371 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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372 self.assertEqual(1, len(c['Changes'])) |
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373 self.assertEqual(begin - 1, c['Last']) |
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374 self.assertFalse(c['Done']) |
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375 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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376 self.assertEqual(1, len(c['Changes'])) |
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377 self.assertEqual(begin - 2, c['Last']) |
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378 self.assertFalse(c['Done']) |
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379 |
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380 UploadFolder(_REMOTE, 'Knee/T1') |
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381 UploadFolder(_REMOTE, 'Knee/T2') |
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382 since = begin |
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383 countPatients = 0 |
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384 countStudies = 0 |
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385 countSeries = 0 |
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386 countInstances = 0 |
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387 completed = 0 |
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388 while True: |
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389 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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390 since = c['Last'] |
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391 for i in c['Changes']: |
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392 if i['ResourceType'] == 'Instance': |
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393 countInstances += 1 |
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394 if i['ResourceType'] == 'Patient': |
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395 countPatients += 1 |
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396 if i['ResourceType'] == 'Study': |
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397 countStudies += 1 |
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398 if i['ResourceType'] == 'Series': |
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399 countSeries += 1 |
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400 if i['ChangeType'] == 'NewInstance': |
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401 countInstances += 1 |
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402 if i['ChangeType'] == 'NewPatient': |
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403 countPatients += 1 |
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404 if i['ChangeType'] == 'NewStudy': |
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405 countStudies += 1 |
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406 if i['ChangeType'] == 'NewSeries': |
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407 countSeries += 1 |
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408 if i['ChangeType'] == 'CompletedSeries': |
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409 completed += 1 |
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410 self.assertTrue('ID' in i) |
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411 self.assertTrue('Path' in i) |
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412 self.assertTrue('Seq' in i) |
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413 if c['Done']: |
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414 break |
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415 |
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416 self.assertEqual(2 * 50, countInstances) |
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417 self.assertEqual(2 * 1, countPatients) |
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418 self.assertEqual(2 * 1, countStudies) |
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419 self.assertEqual(2 * 2, countSeries) |
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420 self.assertEqual(0, completed) |
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421 |
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422 |
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423 def test_archive(self): |
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424 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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425 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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426 |
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427 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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428 self.assertEqual(2, len(z.namelist())) |
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429 |
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430 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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431 self.assertEqual(2, len(z.namelist())) |
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432 |
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433 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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434 self.assertEqual(1, len(z.namelist())) |
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435 |
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436 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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437 |
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438 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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439 self.assertEqual(2, len(z.namelist())) |
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440 |
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441 |
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442 def test_media_archive(self): |
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443 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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444 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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445 |
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446 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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447 self.assertEqual(3, len(z.namelist())) |
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448 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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449 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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450 self.assertTrue('DICOMDIR' in z.namelist()) |
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451 |
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452 try: |
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453 os.remove('/tmp/DICOMDIR') |
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454 except: |
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455 # The file does not exist |
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456 pass |
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457 |
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458 z.extract('DICOMDIR', '/tmp') |
45 | 459 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
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460 stderr = subprocess.STDOUT).split('\n') |
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461 self.assertEqual(3, len(a)) |
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462 self.assertTrue(a[0].startswith('Warning')) |
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463 self.assertEqual('BasicDirectory', a[1]) |
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464 self.assertEqual('', a[2]) |
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465 |
45 | 466 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
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467 stderr = subprocess.STDOUT).split('\n') |
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468 self.assertEqual(1, len(a)) |
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469 self.assertEqual('', a[0]) |
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470 |
45 | 471 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
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472 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
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473 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
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474 |
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475 os.remove('/tmp/DICOMDIR') |
10 | 476 |
477 | |
478 def test_protection(self): | |
479 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
480 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
481 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
482 a = DoGet(_REMOTE, '/patients')[0] | |
483 b = DoGet(_REMOTE, '/patients')[1] | |
484 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
485 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
486 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
487 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
488 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
489 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
490 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
491 | |
492 | |
12 | 493 def test_raw_tags(self): |
10 | 494 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
495 | |
496 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
497 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
498 | |
499 s = '/instances/%s/content/' % i | |
500 | |
501 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
502 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
503 | |
504 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
505 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
506 | |
507 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
508 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
509 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
510 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
511 | |
512 for i in DoGet(_REMOTE, '/instances'): | |
513 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
514 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
515 | |
516 | |
517 def test_raw_tags_mdn(self): | |
518 # Bug reported by Cyril Paulus | |
519 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
520 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
521 | |
522 | |
523 def test_modify_instance(self): | |
524 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
525 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
526 json.dumps({ | |
527 "Replace" : { | |
528 "PatientName" : "hello", | |
529 #"PatientID" : "world" | |
530 }, | |
531 "Remove" : [ "StationName" ], | |
532 "RemovePrivateTags" : None | |
533 }), | |
534 'application/json') | |
535 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
536 | |
537 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
538 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
83 | 539 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) |
10 | 540 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag |
541 | |
542 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
543 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
544 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
545 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
546 | |
547 | |
548 def test_modify_series(self): | |
549 # Upload 4 images from the same series | |
550 for i in range(4): | |
551 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
552 | |
553 origSeries = DoGet(_REMOTE, '/series')[0] | |
554 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
555 '{"Replace":{"PatientName":"Jodogne"}}', | |
556 'application/json')['ID'] | |
557 | |
558 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
559 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
560 self.assertEqual(4, len(instances)) | |
561 for i in instances: | |
562 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
563 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
564 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
565 | |
566 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
567 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
568 | |
569 | |
570 def test_modify_study(self): | |
571 # Upload 4 images from the 2 series of the same study | |
572 for i in range(4): | |
573 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
574 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
575 | |
576 origStudy = DoGet(_REMOTE, '/studies')[0] | |
577 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
578 '{"Replace":{"PatientName":"Jodogne"}}', | |
579 'application/json')['ID'] | |
580 | |
581 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
582 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
583 self.assertEqual(2, len(series)) | |
584 for s in series: | |
585 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
586 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
587 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
588 | |
589 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
590 for i in instances: | |
591 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
592 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
593 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
594 | |
595 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
596 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
597 | |
598 | |
599 def test_anonymize_series(self): | |
600 # Upload 4 images from the same series | |
601 for i in range(4): | |
602 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
603 | |
604 origSeries = DoGet(_REMOTE, '/series')[0] | |
605 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
606 '{}', | |
607 'application/json')['ID'] | |
608 | |
609 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
610 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
611 self.assertEqual(4, len(instances)) | |
612 for i in instances: | |
613 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
614 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
615 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
616 | |
617 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
618 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
619 | |
620 | |
621 def test_anonymize_study(self): | |
622 # Upload 4 images from the 2 series of the same study | |
623 for i in range(4): | |
624 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
625 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
626 | |
627 origStudy = DoGet(_REMOTE, '/studies')[0] | |
628 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
629 '{"Replace":{"PatientName":"Jodogne"}}', | |
630 'application/json')['ID'] | |
631 | |
632 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
633 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
634 self.assertEqual(2, len(series)) | |
635 for s in series: | |
636 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
637 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
638 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
639 | |
640 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
641 for i in instances: | |
642 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
643 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
644 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
645 | |
646 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
647 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 648 |
649 | |
650 | |
651 def test_storescu(self): | |
652 # Check emptiness | |
653 e = DoGet(_REMOTE, '/exports') | |
654 self.assertEqual(0, len(e['Exports'])) | |
655 self.assertEqual(0, e['Last']) | |
656 self.assertTrue(e['Done']) | |
657 e = DoGet(_REMOTE, '/exports?last') | |
658 self.assertEqual(0, len(e['Exports'])) | |
659 self.assertEqual(0, e['Last']) | |
660 self.assertTrue(e['Done']) | |
661 | |
662 # Add 1 instance | |
663 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
664 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
665 | |
666 # Export the instance | |
667 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
668 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
669 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
670 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
671 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
672 | |
673 e = DoGet(_REMOTE, '/exports') | |
674 self.assertEqual(1, len(e['Exports'])) | |
675 self.assertTrue(e['Done']) | |
676 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
677 e = DoGet(_REMOTE, '/exports?limit=1') | |
678 self.assertEqual(1, len(e['Exports'])) | |
679 self.assertTrue(e['Done']) | |
680 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
681 e = DoGet(_REMOTE, '/exports?last') | |
682 self.assertEqual(1, len(e['Exports'])) | |
683 self.assertTrue(e['Done']) | |
684 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
685 seqInstance = e['Last'] | |
686 | |
687 # Export the series | |
688 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
689 | |
690 e = DoGet(_REMOTE, '/exports') | |
691 self.assertEqual(2, len(e['Exports'])) | |
692 self.assertTrue(e['Done']) | |
693 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
694 seqSeries = e['Last'] | |
695 self.assertNotEqual(seqInstance, seqSeries) | |
696 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
697 self.assertEqual(1, len(e['Exports'])) | |
698 self.assertFalse(e['Done']) | |
699 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
700 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
701 self.assertEqual(1, len(e['Exports'])) | |
702 self.assertTrue(e['Done']) | |
703 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
704 e = DoGet(_REMOTE, '/exports?last') | |
705 self.assertEqual(1, len(e['Exports'])) | |
706 self.assertTrue(e['Done']) | |
707 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
708 | |
709 # Export the study | |
710 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
711 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
712 | |
713 # Export the patient | |
714 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
715 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
716 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
717 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
718 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
719 | |
720 e = DoGet(_REMOTE, '/exports') | |
721 self.assertEqual(4, len(e['Exports'])) | |
722 self.assertTrue(e['Done']) | |
723 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
724 seqPatient = e['Last'] | |
725 self.assertNotEqual(seqInstance, seqSeries) | |
726 self.assertNotEqual(seqSeries, seqStudy) | |
727 self.assertNotEqual(seqStudy, seqPatient) | |
728 self.assertTrue(seqInstance < seqSeries) | |
729 self.assertTrue(seqSeries < seqStudy) | |
730 self.assertTrue(seqStudy < seqPatient) | |
731 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
732 self.assertEqual(1, len(e['Exports'])) | |
733 self.assertFalse(e['Done']) | |
734 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
735 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
736 self.assertEqual(1, len(e['Exports'])) | |
737 self.assertFalse(e['Done']) | |
738 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
739 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
740 self.assertEqual(1, len(e['Exports'])) | |
741 self.assertFalse(e['Done']) | |
742 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
743 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
744 self.assertEqual(1, len(e['Exports'])) | |
745 self.assertTrue(e['Done']) | |
746 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
747 e = DoGet(_REMOTE, '/exports?last') | |
748 self.assertEqual(1, len(e['Exports'])) | |
749 self.assertTrue(e['Done']) | |
750 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
751 | |
752 | |
753 # Check the content of the logged information | |
754 e = DoGet(_REMOTE, '/exports')['Exports'] | |
755 | |
756 if 'PatientID' in e[0]: | |
757 # Since Orthanc 0.8.6 | |
758 patient = 'PatientID' | |
759 study = 'StudyInstanceUID' | |
760 series = 'SeriesInstanceUID' | |
761 instance = 'SOPInstanceUID' | |
762 else: | |
763 # Up to Orthanc 0.8.5 | |
764 patient = 'PatientId' | |
765 study = 'StudyInstanceUid' | |
766 series = 'SeriesInstanceUid' | |
767 instance = 'SopInstanceUid' | |
768 | |
769 for k in range(4): | |
770 self.assertTrue('Date' in e[k]) | |
771 self.assertTrue('Seq' in e[k]) | |
772 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
773 | |
774 self.assertEqual(10, len(e[0])) | |
775 self.assertEqual('Instance', e[0]['ResourceType']) | |
776 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
777 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
778 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
779 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
780 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
781 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
782 | |
783 self.assertEqual(9, len(e[1])) | |
784 self.assertEqual('Series', e[1]['ResourceType']) | |
785 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
786 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
787 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
788 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
789 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
790 | |
791 self.assertEqual(8, len(e[2])) | |
792 self.assertEqual('Study', e[2]['ResourceType']) | |
793 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
794 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
795 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
796 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
797 | |
798 self.assertEqual(7, len(e[3])) | |
799 self.assertEqual('Patient', e[3]['ResourceType']) | |
800 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
801 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
802 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
803 | |
804 DropOrthanc(_REMOTE) | |
805 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
806 | |
807 | |
808 def test_store_peer(self): | |
809 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
810 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
811 | |
812 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
813 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
814 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
815 | |
816 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
817 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
818 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
819 | |
820 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
821 | |
822 DropOrthanc(_REMOTE) | |
823 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
824 | |
825 | |
826 def test_bulk_storescu(self): | |
827 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
828 | |
829 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
830 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
831 | |
832 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
833 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
834 | |
835 DropOrthanc(_LOCAL) | |
836 | |
837 # Send using patient's UUID | |
838 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
839 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
840 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
841 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
842 | |
843 | |
844 def test_color(self): | |
845 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
846 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
847 self.assertEqual("RGB", im.mode) | |
848 self.assertEqual(41, im.size[0]) | |
849 self.assertEqual(41, im.size[1]) | |
850 | |
851 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 852 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 853 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
854 | |
855 | |
12 | 856 def test_faking_ruby_put(self): |
857 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
858 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
859 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
860 a = DoGet(_REMOTE, '/patients')[0] | |
861 b = DoGet(_REMOTE, '/patients')[1] | |
862 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
863 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
864 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
865 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
866 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
867 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
868 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
869 | |
870 | |
871 def test_faking_ruby_delete(self): | |
872 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
873 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
874 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
875 a = DoGet(_REMOTE, '/patients')[0] | |
876 b = DoGet(_REMOTE, '/patients')[1] | |
877 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
878 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
879 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
880 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
881 | |
882 | |
883 def test_faking_google_put(self): | |
884 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
885 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
886 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
887 a = DoGet(_REMOTE, '/patients')[0] | |
888 b = DoGet(_REMOTE, '/patients')[1] | |
889 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
890 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
891 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
892 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
893 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
894 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
895 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
896 | |
897 | |
898 def test_faking_google_delete(self): | |
899 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
900 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
901 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
902 a = DoGet(_REMOTE, '/patients')[0] | |
903 b = DoGet(_REMOTE, '/patients')[1] | |
904 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
905 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
906 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
907 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
908 | |
909 | |
910 def test_lua(self): | |
911 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
912 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
913 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
914 | |
915 | |
916 def test_metadata(self): | |
917 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
918 p = DoGet(_REMOTE, '/patients')[0] | |
919 i = DoGet(_REMOTE, '/instances')[0] | |
920 | |
921 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
922 self.assertEqual(1, len(m)) | |
923 self.assertEqual('LastUpdate', m[0]) | |
924 | |
925 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
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926 self.assertEqual(4, len(m)) |
12 | 927 self.assertTrue('IndexInSeries' in m) |
928 self.assertTrue('ReceptionDate' in m) | |
929 self.assertTrue('RemoteAET' in m) | |
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930 self.assertTrue('Origin' in m) |
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931 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i), 1) |
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932 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i), 'RestApi') |
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933 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i), '') # None, received by REST API |
12 | 934 |
935 # Play with custom metadata | |
936 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
937 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
938 self.assertEqual(2, len(m)) | |
939 self.assertTrue('LastUpdate' in m) | |
940 self.assertTrue('5555' in m) | |
941 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
942 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
943 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
944 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
945 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
946 self.assertEqual(1, len(m)) | |
947 self.assertTrue('LastUpdate' in m) | |
13 | 948 |
949 | |
950 def test_statistics(self): | |
951 # Upload 16 instances | |
952 for i in range(4): | |
953 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
954 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
955 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
956 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
957 | |
958 s = DoGet(_REMOTE, '/statistics') | |
959 self.assertEqual(16, s['CountInstances']) | |
960 self.assertEqual(2, s['CountPatients']) | |
961 self.assertEqual(2, s['CountStudies']) | |
962 self.assertEqual(4, s['CountSeries']) | |
963 d = int(s['TotalUncompressedSize']) | |
964 | |
965 e = 0 | |
966 for patient in DoGet(_REMOTE, '/patients'): | |
967 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
968 self.assertEqual(8, s['CountInstances']) | |
969 self.assertEqual(1, s['CountStudies']) | |
970 self.assertEqual(2, s['CountSeries']) | |
971 e += int(s['UncompressedSize']) | |
972 | |
973 for study in DoGet(_REMOTE, '/studies'): | |
974 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
975 self.assertEqual(8, s['CountInstances']) | |
976 self.assertEqual(2, s['CountSeries']) | |
977 e += int(s['UncompressedSize']) | |
978 | |
979 for series in DoGet(_REMOTE, '/series'): | |
980 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
981 self.assertEqual(4, s['CountInstances']) | |
982 e += int(s['UncompressedSize']) | |
983 | |
984 self.assertEqual(3 * d, e) | |
985 | |
986 | |
987 def test_custom_attachment(self): | |
988 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
989 patient = DoGet(_REMOTE, '/patients')[0] | |
990 instance = DoGet(_REMOTE, '/instances')[0] | |
991 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
992 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
993 | |
994 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
995 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
996 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
997 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
998 | |
999 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
1000 hello = 'hellohellohellohellohellohellohellohellohello' | |
1001 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
1002 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1003 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1004 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1005 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
1006 | |
1007 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
1008 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1009 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1010 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1011 size + | |
1012 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
1013 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1014 | |
1015 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1016 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
1017 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1018 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
1019 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
1020 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
1021 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
1022 | |
1023 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
1024 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
1025 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1026 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1027 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
1028 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
1029 | |
1030 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1031 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
1032 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
1033 | |
1034 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
1035 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
1036 | |
1037 | |
1038 def test_incoming_storescu(self): | |
1039 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
45 | 1040 subprocess.check_call([ FindExecutable('storescu'), |
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1041 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
13 | 1042 GetDatabasePath('ColorTestImageJ.dcm') ]) |
1043 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1044 | |
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1045 i = DoGet(_REMOTE, '/instances') |
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1046 self.assertEqual(1, len(i)) |
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1047 m = DoGet(_REMOTE, '/instances/%s/metadata' % i[0]) |
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1048 self.assertEqual(4, len(m)) |
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1049 self.assertTrue('IndexInSeries' in m) |
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1050 self.assertTrue('ReceptionDate' in m) |
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1051 self.assertTrue('RemoteAET' in m) |
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1052 self.assertTrue('Origin' in m) |
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1053 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/IndexInSeries' % i[0]), 1) |
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|
1054 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/Origin' % i[0]), 'DicomProtocol') |
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test Origin metadata of instances
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|
1055 self.assertEqual(DoGet(_REMOTE, '/instances/%s/metadata/RemoteAET' % i[0]), 'STORESCU') |
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test Origin metadata of instances
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|
1056 |
13 | 1057 |
1058 def test_incoming_findscu(self): | |
1059 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1060 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
1061 | |
1062 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
1063 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
1064 self.assertEqual(2, len(patientNames)) | |
1065 self.assertTrue('Test Patient BG ' in patientNames) | |
1066 self.assertTrue('Anonymized' in patientNames) | |
1067 | |
1068 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1069 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1070 self.assertEqual(2, len(series)) | |
1071 self.assertTrue('20070208' in series) | |
1072 self.assertTrue('19980312' in series) | |
1073 | |
56
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ModalitiesInStudy subtest
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diff
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|
1074 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021', '-k', 'ModalitiesInStudy=MR\\XA' ]) |
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ModalitiesInStudy subtest
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diff
changeset
|
1075 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) |
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ModalitiesInStudy subtest
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diff
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|
1076 self.assertEqual(1, len(series)) |
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ModalitiesInStudy subtest
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1077 self.assertTrue('19980312' in series) |
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ModalitiesInStudy subtest
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parents:
55
diff
changeset
|
1078 |
13 | 1079 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) |
1080 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1081 self.assertEqual(1, len(series)) | |
1082 | |
1083 # Test the "CaseSentitivePN" flag (false by default) | |
1084 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1085 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1086 self.assertEqual(1, len(series)) | |
66
821d9eb73c45
Test returning sequence values
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diff
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|
1087 |
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Test returning sequence values
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parents:
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diff
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|
1088 # Test returning sequence values (only since Orthanc 0.9.5) |
821d9eb73c45
Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
1089 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,2112' ]) # "ColorTestImageJ" has this sequence tag |
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Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1090 sequences = re.findall('\(0008,2112\)', i) |
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Test returning sequence values
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1091 self.assertEqual(1, len(sequences)) |
70 | 1092 |
1093 # Test range search (buggy if Orthanc <= 0.9.6) | |
1094 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-' ]) | |
1095 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1096 self.assertEqual(2, len(studies)) | |
1097 self.assertTrue('20070208' in studies) | |
1098 self.assertTrue('19980312' in studies) | |
1099 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=19980312-19980312' ]) | |
1100 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1101 self.assertEqual(1, len(studies)) | |
1102 self.assertTrue('19980312' in studies) | |
1103 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'StudyDate=-19980312' ]) | |
1104 studies = re.findall('\(0008,0020\).*?\[\s*(.*?)\s*\]', i) | |
1105 self.assertEqual(1, len(studies)) | |
1106 self.assertTrue('19980312' in studies) | |
13 | 1107 |
1108 | |
1109 def test_incoming_movescu(self): | |
1110 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1111 | |
1112 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
17 | 1113 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1114 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
1115 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
1116 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1117 | |
1118 | |
1119 def test_findscu(self): | |
1120 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1121 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1122 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1123 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1124 | |
1125 # Test the "find-patient" level | |
1126 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1127 self.assertEqual(1, len(p)) | |
1128 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1129 | |
1130 # Test wildcards constraints. The "LO" value representation | |
1131 # for PatientID is always case-sensitive, but the "PN" for | |
1132 # PatientName might depend on the implementation: | |
1133 # "GenerateConfigurationForTests.py" will force it to be case | |
1134 # insensitive (which was the default until Orthanc 0.8.6). | |
1135 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1136 self.assertEqual(1, len(p)) | |
1137 | |
1138 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1139 self.assertEqual(1, len(p)) | |
1140 | |
1141 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1142 self.assertEqual(1, len(p)) | |
1143 | |
1144 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1145 self.assertEqual(1, len(p)) | |
1146 | |
1147 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1148 self.assertEqual(0, len(p)) | |
1149 | |
1150 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1151 self.assertEqual(0, len(p)) | |
1152 | |
1153 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1154 self.assertEqual(0, len(p)) | |
1155 | |
1156 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1157 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1158 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1159 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1160 | |
1161 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1162 self.assertEqual(2, len(p)) | |
1163 | |
1164 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1165 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1166 self.assertEqual(1, len(s)) | |
1167 self.assertEqual('20070208', s[0]['StudyDate']) | |
1168 | |
1169 # Test range searches | |
1170 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1171 'StudyDate' : '-20070101' }) | |
1172 self.assertEqual(0, len(t)) | |
1173 | |
1174 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1175 'StudyDate' : '20090101-' }) | |
1176 self.assertEqual(0, len(t)) | |
1177 | |
1178 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1179 'StudyDate' : '20070101-' }) | |
1180 self.assertEqual(1, len(t)) | |
1181 | |
1182 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1183 'StudyDate' : '-20090101' }) | |
1184 self.assertEqual(1, len(t)) | |
1185 | |
1186 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1187 'StudyDate' : '20070207-20070207' }) | |
1188 self.assertEqual(0, len(t)) | |
1189 | |
1190 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1191 'StudyDate' : '20070208-20070208' }) | |
1192 self.assertEqual(1, len(t)) | |
1193 | |
1194 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1195 'StudyDate' : '20070209-20070209' }) | |
1196 self.assertEqual(0, len(t)) | |
1197 | |
1198 # Test the ModalitiesInStudy tag | |
1199 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1200 'PatientID' : 'B9uTHKOZ', | |
1201 'ModalitiesInStudy' : 'US' }) | |
1202 self.assertEqual(0, len(t)) | |
1203 | |
1204 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1205 'PatientID' : 'B9uTHKOZ', | |
1206 'ModalitiesInStudy' : 'CT' }) | |
1207 self.assertEqual(1, len(t)) | |
1208 | |
1209 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1210 'PatientID' : 'B9uTHKOZ', | |
1211 'ModalitiesInStudy' : 'US\\CT' }) | |
1212 self.assertEqual(1, len(t)) | |
1213 | |
1214 # Test the "find-series" level | |
1215 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1216 'PatientID' : 'B9uTHKOZ', | |
1217 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1218 self.assertEqual(1, len(t)) | |
1219 | |
1220 # Test "\" separator | |
1221 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1222 'PatientID' : 'B9uTHKOZ', | |
1223 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1224 'Modality' : 'MR\\CT\\US' }) | |
1225 self.assertEqual(1, len(t)) | |
1226 | |
1227 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1228 'PatientID' : 'B9uTHKOZ', | |
1229 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1230 'Modality' : 'MR\\US' }) | |
1231 self.assertEqual(0, len(t)) | |
1232 | |
1233 | |
1234 def test_update_modalities(self): | |
1235 try: | |
1236 DoDelete(_REMOTE, '/modalities/toto') | |
1237 except: | |
1238 pass | |
1239 try: | |
1240 DoDelete(_REMOTE, '/modalities/tata') | |
1241 except: | |
1242 pass | |
1243 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1244 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
1245 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
1246 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
1247 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
1248 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1249 DoDelete(_REMOTE, '/modalities/toto') | |
1250 DoDelete(_REMOTE, '/modalities/tata') | |
1251 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1252 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1253 | |
1254 | |
1255 def test_update_peers(self): | |
1256 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1257 try: | |
1258 DoDelete(_REMOTE, '/peers/toto') | |
1259 except: | |
1260 pass | |
1261 try: | |
1262 DoDelete(_REMOTE, '/peers/tata') | |
1263 except: | |
1264 pass | |
1265 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1266 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1267 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1268 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1269 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1270 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1271 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1272 DoDelete(_REMOTE, '/peers/toto') | |
1273 DoDelete(_REMOTE, '/peers/tata') | |
1274 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1275 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1276 | |
1277 | |
1278 def test_mesterhazy_modification(self): | |
1279 # When I modify a series ( eg. curl | |
1280 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1281 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1282 # series is added to a new Study, instead of the existing | |
1283 # Study. Fixed in Orthanc 0.7.5 | |
1284 | |
1285 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1286 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1287 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1288 | |
1289 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1290 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1291 | |
1292 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1293 | |
1294 | |
1295 def test_create(self): | |
1296 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1297 json.dumps({ | |
1298 'PatientName' : 'Jodogne', | |
1299 'Modality' : 'CT', | |
58 | 1300 'SOPClassUID' : '1.2.840.10008.5.1.4.1.1.1', |
13 | 1301 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA |
1302 })) | |
1303 | |
1304 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1305 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1306 | |
1307 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1308 self.assertEqual((5, 5), png.size) | |
1309 | |
38 | 1310 j = DoGet(_REMOTE, i['Path']) |
1311 self.assertEqual('Instance', j['Type']) | |
1312 self.assertEqual(j['ID'], i['ID']) | |
1313 | |
13 | 1314 |
1315 def test_pilates(self): | |
1316 # "SCU failed error when accessing orthanc with osirix" by | |
1317 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1318 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1319 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1320 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1321 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1322 | |
1323 | |
1324 def test_shared_tags(self): | |
1325 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1326 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1327 p = DoGet(_REMOTE, '/patients')[0] | |
1328 | |
1329 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1330 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1331 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1332 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1333 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1334 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1335 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1336 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1337 | |
1338 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1339 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1340 | |
1341 | |
1342 def test_modules(self): | |
1343 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1344 p = DoGet(_REMOTE, '/patients')[0] | |
1345 s = DoGet(_REMOTE, '/studies')[0] | |
1346 t = DoGet(_REMOTE, '/series')[0] | |
1347 | |
1348 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1349 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1350 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1351 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1352 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1353 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1354 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1355 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1356 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1357 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1358 | |
1359 | |
1360 def test_auto_directory(self): | |
1361 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1362 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1363 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
1364 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
1365 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1366 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1367 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1368 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1369 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1370 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1371 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1372 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1373 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1374 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
79 | 1375 self.assertTrue('raw' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) |
13 | 1376 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) |
28 | 1377 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1378 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1379 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1380 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1381 |
1382 | |
1383 def test_echo(self): | |
1384 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1385 | |
1386 | |
1387 def test_xml(self): | |
1388 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1389 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1390 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1391 self.assertEqual(len(items), len(json)) | |
1392 | |
1393 self.assertTrue('dicom-conformance' in json) | |
1394 | |
1395 ok = False | |
1396 for i in items: | |
1397 if i.childNodes[0].data == 'dicom-conformance': | |
1398 ok = True | |
1399 self.assertTrue(ok) | |
1400 | |
1401 | |
46
85b2e36ed392
explicit GoogleCode source
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1402 def test_googlecode_issue_16(self): |
13 | 1403 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] |
1404 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1405 self.assertEqual('0018,1063', t) | |
1406 | |
1407 | |
46
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1408 def test_googlecode_issue_22(self): |
13 | 1409 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] |
1410 a = [ | |
1411 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1412 "c69eee9a51eea3e8611e82e578897254", | |
1413 "315666be83e2d0111c77bc0996d84901", | |
1414 "3e27aa959d911172c48a1436443c72b1", | |
1415 "958642c9e7e9d232d3869faff546058c", | |
1416 "5e7ea8e3e4230cae707d143481355c59", | |
1417 "eda37f83558d858a596175aed8b2ad47", | |
1418 "486713bd2895c4ecbe0e97715ac7f80a", | |
1419 "091ef729eb169e67da8a0faa9631f9a8", | |
1420 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1421 "e2f39e85896fe58876654b94cd0b5013", | |
1422 "6fd2129e4950abbe1be053bc814d5da8", | |
1423 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1424 "746f808582156734dd6b6fdfd3a0b72c", | |
1425 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1426 "806b8b3e300c615099c11a5ec23465aa", | |
1427 "7c836aa298ba6eef96434579af631a11", | |
1428 "a0357dc9f4f72d73a885c33d7c287446", | |
1429 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1430 "8b114c526b8cbed6cad8a3248b7b480c", | |
1431 "44e6670f127e612a2b4aa60a0d207698", | |
1432 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1433 "95c796c2fa8f59018b15cf2987b1f79b", | |
1434 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1435 ] | |
1436 | |
1437 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1438 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1439 | |
1440 for i in range(len(a)): | |
1441 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1442 | |
1443 | |
46
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1444 def test_googlecode_issue_19(self): |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1445 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1446 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1447 | |
1448 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
21
2a29bcff60a7
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1449 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1450 |
1451 | |
46
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
1452 def test_googlecode_issue_37(self): |
13 | 1453 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 |
1454 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1455 | |
1456 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1457 'CaseSensitive' : True, | |
1458 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1459 self.assertEqual(1, len(a)) | |
14 | 1460 |
1461 | |
1462 def test_rest_find(self): | |
1463 # Upload 8 instances | |
1464 for i in range(2): | |
1465 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1466 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1467 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1468 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1469 | |
1470 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1471 'CaseSensitive' : False, | |
1472 'Query' : { 'PatientName' : '*n*' }}) | |
1473 self.assertEqual(2, len(a)) | |
1474 | |
1475 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1476 'CaseSensitive' : True, | |
1477 'Query' : { 'PatientName' : '*n*' }}) | |
1478 self.assertEqual(0, len(a)) | |
1479 | |
1480 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1481 'Level' : 'Patient', | |
1482 'CaseSensitive' : False, | |
1483 'Query' : { 'PatientName' : '*ne*' }}) | |
1484 self.assertEqual(1, len(a)) | |
1485 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1486 | |
1487 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1488 'CaseSensitive' : True, | |
1489 'Query' : { 'PatientName' : '*ne*' }}) | |
1490 self.assertEqual(0, len(a)) | |
1491 | |
1492 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1493 'CaseSensitive' : True, | |
1494 'Query' : { 'PatientName' : '*NE*' }}) | |
1495 self.assertEqual(1, len(a)) | |
1496 | |
1497 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1498 'CaseSensitive' : True, | |
1499 'Query' : { 'PatientName' : '*NE*' }}) | |
1500 self.assertEqual(2, len(a)) | |
1501 | |
1502 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1503 'CaseSensitive' : True, | |
1504 'Query' : { 'PatientName' : '*NE*' }}) | |
1505 self.assertEqual(4, len(a)) | |
1506 | |
1507 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1508 self.assertEqual(2, len(a)) | |
1509 | |
1510 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1511 self.assertEqual(2, len(a)) | |
1512 | |
1513 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1514 self.assertEqual(4, len(a)) | |
1515 | |
1516 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1517 self.assertEqual(8, len(a)) | |
1518 | |
1519 | |
1520 def test_rest_query_retrieve(self): | |
1521 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1522 | |
1523 # Upload 8 instances | |
1524 for i in range(2): | |
1525 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1526 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1527 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1528 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1529 | |
1530 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1531 for p in DoGet(_REMOTE, '/patients'): | |
1532 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1533 DoDelete(_REMOTE, '/patients/%s' % p) | |
1534 | |
1535 for q in DoGet(_REMOTE, '/queries'): | |
1536 DoDelete(_REMOTE, '/queries/%s' % q) | |
1537 | |
1538 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1539 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1540 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1541 'Query' : { |
1542 'PatientName' : '*NE*', | |
1543 'StudyDate' : '*', | |
1544 }})['ID'] | |
14 | 1545 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1546 | |
1547 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1548 self.assertTrue('answers' in b) | |
1549 self.assertTrue('level' in b) | |
1550 self.assertTrue('modality' in b) | |
1551 self.assertTrue('query' in b) | |
1552 self.assertTrue('retrieve' in b) | |
1553 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1554 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1555 | |
1556 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1557 self.assertEqual(2, len(q)) |
14 | 1558 self.assertTrue('PatientName' in q) |
27 | 1559 self.assertTrue('StudyDate' in q) |
14 | 1560 self.assertEqual('*NE*', q['PatientName']) |
27 | 1561 self.assertEqual('*', q['StudyDate']) |
14 | 1562 |
1563 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1564 | |
1565 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1566 self.assertTrue('content' in s) | |
1567 self.assertTrue('retrieve' in s) | |
1568 | |
1569 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1570 self.assertEqual('887', s['PatientID']) | |
1571 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1572 | |
1573 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1574 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1575 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1576 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1577 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1578 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1579 | |
1580 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
1581 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1582 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1583 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1584 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1585 | |
1586 DoDelete(_REMOTE, '/queries/%s' % a) | |
1587 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1588 | |
1589 | |
1590 def test_parent(self): | |
1591 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1592 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1593 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1594 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1595 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
1596 self.assertEqual(instance, u); | |
1597 | |
1598 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1599 self.assertEqual('Patient', a['Type']) | |
1600 self.assertEqual(patient, a['ID']) | |
1601 | |
1602 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1603 self.assertEqual('Patient', a['Type']) | |
1604 self.assertEqual(patient, a['ID']) | |
1605 | |
1606 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1607 self.assertEqual('Study', a['Type']) | |
1608 self.assertEqual(study, a['ID']) | |
1609 | |
1610 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1611 self.assertEqual('Patient', a['Type']) | |
1612 self.assertEqual(patient, a['ID']) | |
1613 | |
1614 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1615 self.assertEqual('Study', a['Type']) | |
1616 self.assertEqual(study, a['ID']) | |
1617 | |
1618 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1619 self.assertEqual('Series', a['Type']) | |
1620 self.assertEqual(series, a['ID']) | |
1621 | |
1622 | |
1623 def test_shanon(self): | |
1624 def Anonymize(instance, replacements = {}): | |
1625 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
1626 | |
1627 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1628 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1629 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1630 | |
1631 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1632 ids = [ 'ozp00SjY2xG', | |
1633 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1634 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1635 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1636 | |
1637 a = ExtractDicomTags(Anonymize(u), tags) | |
1638 for i in range(4): | |
1639 self.assertNotEqual(ids[i], a[i]) | |
1640 self.assertTrue(a[4].startswith('Orthanc')) | |
1641 | |
1642 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1643 for i in range(4): | |
1644 self.assertNotEqual(ids[i], a[i]) | |
1645 self.assertFalse(a[4].startswith('Orthanc')) | |
1646 | |
1647 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1648 self.assertEqual('instance', a[3]) | |
1649 self.assertFalse(a[4].startswith('Orthanc')) | |
1650 | |
1651 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1652 self.assertEqual('series', a[2]) | |
1653 self.assertFalse(a[4].startswith('Orthanc')) | |
1654 | |
1655 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1656 self.assertEqual('study', a[1]) | |
1657 self.assertFalse(a[4].startswith('Orthanc')) | |
1658 | |
1659 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1660 self.assertEqual('patient', a[0]) | |
1661 self.assertFalse(a[4].startswith('Orthanc')) | |
1662 | |
1663 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1664 'StudyInstanceUID' : 'study', | |
1665 'SeriesInstanceUID' : 'series', | |
1666 'SOPInstanceUID' : 'instance' }), tags) | |
1667 self.assertEqual('patient', a[0]) | |
1668 self.assertFalse(a[4].startswith('Orthanc')) | |
1669 | |
1670 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1671 | |
1672 | |
1673 def test_shanon_2(self): | |
1674 def Modify(instance, replacements = {}): | |
1675 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
1676 | |
1677 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1678 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1679 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1680 | |
1681 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1682 ids = [ 'ozp00SjY2xG', | |
1683 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1684 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1685 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1686 | |
1687 a = ExtractDicomTags(Modify(u), tags) | |
1688 self.assertEqual(ids[0], a[0]) | |
1689 self.assertEqual(ids[1], a[1]) | |
1690 self.assertEqual(ids[2], a[2]) | |
1691 self.assertNotEqual(ids[3], a[3]) | |
1692 self.assertEqual(0, len(a[4])) | |
1693 | |
1694 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1695 self.assertEqual(ids[0], a[0]) | |
1696 self.assertEqual(ids[1], a[1]) | |
1697 self.assertEqual(ids[2], a[2]) | |
1698 self.assertEqual('instance', a[3]) | |
1699 | |
1700 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1701 self.assertEqual(ids[0], a[0]) | |
1702 self.assertEqual(ids[1], a[1]) | |
1703 self.assertEqual('series', a[2]) | |
1704 self.assertNotEqual(ids[3], a[3]) | |
1705 | |
1706 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1707 self.assertEqual(ids[0], a[0]) | |
1708 self.assertEqual('study', a[1]) | |
1709 self.assertNotEqual(ids[2], a[2]) | |
1710 self.assertNotEqual(ids[3], a[3]) | |
1711 | |
1712 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1713 self.assertEqual('patient', a[0]) | |
1714 self.assertNotEqual(ids[1], a[1]) | |
1715 self.assertNotEqual(ids[2], a[2]) | |
1716 self.assertNotEqual(ids[3], a[3]) | |
1717 | |
1718 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1719 'StudyInstanceUID' : 'study', | |
1720 'SeriesInstanceUID' : 'series', | |
1721 'SOPInstanceUID' : 'instance' }), tags) | |
1722 self.assertEqual('patient', a[0]) | |
1723 self.assertEqual('study', a[1]) | |
1724 self.assertEqual('series', a[2]) | |
1725 self.assertEqual('instance', a[3]) | |
1726 | |
1727 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1728 | |
1729 | |
1730 def test_instances_tags(self): | |
1731 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1732 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1733 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1734 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1735 | |
1736 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1737 self.assertEqual(2, len(i)) | |
1738 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1739 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1740 | |
1741 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1742 self.assertEqual(2, len(i)) | |
1743 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1744 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1745 | |
1746 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1747 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1748 self.assertEqual(1, len(i)) | |
1749 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1750 | |
1751 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1752 self.assertEqual(1, len(i)) | |
1753 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1754 | |
1755 | |
1756 def test_lookup(self): | |
1757 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1758 self.assertEqual(0, len(a)) | |
1759 | |
1760 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1761 | |
1762 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1763 self.assertEqual(1, len(a)) | |
1764 self.assertEqual('Patient', a[0]['Type']) | |
1765 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1766 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1767 | |
1768 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1769 self.assertEqual(1, len(a)) | |
1770 self.assertEqual('Study', a[0]['Type']) | |
1771 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1772 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1773 | |
1774 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1775 self.assertEqual(1, len(a)) | |
1776 self.assertEqual('Series', a[0]['Type']) | |
1777 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1778 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1779 | |
1780 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1781 self.assertEqual(1, len(a)) | |
1782 self.assertEqual('Instance', a[0]['Type']) | |
1783 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1784 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1785 | |
1786 DropOrthanc(_REMOTE) | |
1787 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1788 self.assertEqual(0, len(a)) | |
1789 | |
15 | 1790 |
1791 def test_autorouting(self): | |
1792 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
1793 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
1794 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
1795 | |
1796 # Check that this version is >= 0.8.0 | |
1797 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
1798 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1799 | |
1800 UploadInstance(_REMOTE, knee1) | |
1801 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1802 | |
1803 DropOrthanc(_REMOTE) | |
1804 DropOrthanc(_LOCAL) | |
1805 InstallLuaScript('Lua/Autorouting.lua') | |
1806 UploadInstance(_REMOTE, knee1) | |
1807 UploadInstance(_REMOTE, knee2) | |
1808 UploadInstance(_REMOTE, other) | |
1809 WaitEmpty(_REMOTE) | |
1810 UninstallLuaCallbacks() | |
1811 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
1812 | |
1813 DropOrthanc(_REMOTE) | |
1814 DropOrthanc(_LOCAL) | |
1815 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
1816 UploadInstance(_REMOTE, knee1) | |
1817 UploadInstance(_REMOTE, knee2) | |
1818 UploadInstance(_REMOTE, other) | |
1819 WaitEmpty(_REMOTE) | |
1820 UninstallLuaCallbacks() | |
1821 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
1822 | |
1823 DropOrthanc(_REMOTE) | |
1824 DropOrthanc(_LOCAL) | |
1825 InstallLuaScript('Lua/AutoroutingModification.lua') | |
1826 UploadInstance(_REMOTE, knee1) | |
1827 WaitEmpty(_REMOTE) | |
1828 UninstallLuaCallbacks() | |
1829 i = DoGet(_LOCAL, '/instances') | |
1830 self.assertEqual(1, len(i)) | |
1831 | |
1832 with tempfile.NamedTemporaryFile(delete = True) as f: | |
1833 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
1834 f.flush() | |
45 | 1835 routed = subprocess.check_output([ FindExecutable('dcm2xml'), f.name ]) |
15 | 1836 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) |
1837 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
1838 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 1839 |
1840 | |
1841 def test_storescu_rf(self): | |
1842 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
1843 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1844 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1845 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 1846 |
1847 | |
1848 def test_anonymize_instance(self): | |
1849 def AnonymizeAndUpload(instanceId, parameters): | |
1850 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
1851 'application/json'), 'application/dicom')['ID'] | |
1852 | |
1853 def ModifyAndUpload(instanceId, parameters): | |
1854 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
1855 'application/json'), 'application/dicom')['ID'] | |
1856 | |
1857 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
1858 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
1859 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
1860 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
1861 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
1862 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1863 | |
1864 b = AnonymizeAndUpload(a, '{}') | |
1865 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1866 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1867 | |
1868 # Keep private tag (only OK since Orthanc 0.8.0) | |
1869 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
1870 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1871 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1872 | |
1873 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
1874 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1875 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1876 | |
1877 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
1878 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1879 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
1880 | |
1881 # Examples from the Wiki | |
1882 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
1883 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1884 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1885 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1886 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1887 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1888 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1889 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1890 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1891 | |
1892 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
1893 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1894 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1895 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1896 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1897 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1898 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1899 | |
1900 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
1901 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1902 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1903 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
1904 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1905 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1906 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1907 | |
1908 | |
1909 # Test modify non-existing | |
1910 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1911 json.dumps({ | |
1912 'PatientName' : 'Jodogne', | |
1913 'Modality' : 'CT', | |
1914 }))['ID'] | |
1915 | |
1916 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
1917 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
1918 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
1919 | |
1920 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
1921 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
1922 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
1923 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
1924 | |
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1925 |
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1926 def test_incoming_jpeg(self): |
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1927 def storescu(image, acceptUnknownSopClassUid): |
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1928 if acceptUnknownSopClassUid: |
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1929 tmp = [ '-xf', GetDatabasePath('UnknownSopClassUid.cfg'), 'Default' ] |
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1930 else: |
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1931 tmp = [ '-xs' ] |
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1932 |
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1933 with open(os.devnull, 'w') as FNULL: |
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1934 subprocess.check_call([ FindExecutable('storescu') ] + tmp + |
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1935 [ _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1936 GetDatabasePath(image) ], |
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1937 stderr = FNULL) |
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1938 |
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1939 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1940 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1941 self.assertRaises(Exception, lambda: storescu('Knix/Loc/IM-0001-0001.dcm', False)) |
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1942 self.assertRaises(Exception, lambda: storescu('UnknownSopClassUid.dcm', True)) |
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1943 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1944 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
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1945 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1946 storescu('Knix/Loc/IM-0001-0001.dcm', False) |
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1947 storescu('UnknownSopClassUid.dcm', True) |
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1948 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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1949 |
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1950 |
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1951 def test_storescu_jpeg(self): |
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1952 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1953 |
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1954 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
64 | 1955 i = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
1956 | |
1957 # This is JPEG lossless | |
1958 self.assertEqual('1.2.840.10008.1.2.4.70', DoGet(_REMOTE, '/instances/%s/header?simplify' % i)['TransferSyntaxUID']) | |
1959 | |
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1960 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1961 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1962 |
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1963 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1964 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1965 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1966 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1967 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1968 |
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1969 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1970 |
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1971 DropOrthanc(_REMOTE) |
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1972 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1973 |
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1974 |
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1975 def test_pixel_data(self): |
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1976 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1977 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1978 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1979 |
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1980 phenixSize = 358 * 512 * 2 |
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1981 colorSize = 1000 * 1000 * 3 |
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1982 jpegSize = 51918 |
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1983 |
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1984 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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1985 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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1986 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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1987 |
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1988 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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1989 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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1990 |
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1991 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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1992 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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1993 |
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1994 |
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1995 def test_decode_brainix(self): |
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1996 brainix = [ |
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1997 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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1998 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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1999 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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2000 ] |
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2001 h = '6fb11b932d535c2be04beabd99793ff8' |
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2002 maxValue = 426.0 |
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2003 |
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2004 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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2005 for i in brainix: |
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2006 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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2007 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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2008 |
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2009 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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2010 for i in brainix: |
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2011 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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2012 |
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2013 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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2014 for i in brainix: |
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2015 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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2016 |
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2017 for i in brainix: |
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2018 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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2019 |
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2020 |
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2021 def test_decode_color(self): |
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2022 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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2023 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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2024 |
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2025 for i in [ imagej, color ]: |
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2026 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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2027 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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2028 |
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2029 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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2030 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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2031 |
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2032 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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2033 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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2034 |
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2035 |
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2036 def test_decode_rf(self): |
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2037 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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2038 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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2039 |
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2040 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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2041 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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2042 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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2043 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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2044 |
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2045 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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2046 |
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2047 |
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2048 def test_decode_multiframe(self): |
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2049 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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2050 |
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2051 # Test the first frame |
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2052 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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2053 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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2054 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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2055 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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2056 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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2057 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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2058 |
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2059 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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|
2060 |
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2061 # Test the last frame |
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2062 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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2063 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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2064 |
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2065 |
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2066 def test_decode_signed(self): |
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2067 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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2068 minValue = -2000 |
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2069 maxValue = 4042 |
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2070 |
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2071 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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2072 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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2073 |
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2074 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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2075 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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|
2076 |
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2077 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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2078 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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2079 |
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2080 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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2081 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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2082 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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2083 |
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2084 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 2085 |
2086 | |
46
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2087 def test_googlecode_issue_32(self): |
22 | 2088 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] |
2089 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
2090 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
2091 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
2092 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
2093 | |
2094 | |
2095 def test_encodings(self): | |
23 | 2096 # Latin-1 (ISO_IR 100) |
22 | 2097 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2098 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2099 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2100 |
2101 # Latin-2 (ISO_IR 101) | |
2102 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2103 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2104 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2105 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2106 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2107 | |
26
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2108 |
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2109 def test_storescu_custom_aet(self): |
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2110 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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2111 # setting of the local AET during C-Store SCU (both in Lua and |
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2112 # in the REST API)." |
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2113 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2114 |
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2115 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2116 |
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2117 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2118 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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|
2119 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2120 |
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2121 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2122 'LocalAet' : 'YOP', |
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2123 'Resources' : [ a['ID'], b['ID'] ] |
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2124 }) |
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2125 |
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2126 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2127 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2128 |
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2129 DropOrthanc(_LOCAL) |
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2130 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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|
2131 |
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2132 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2133 'Resources' : [ c['ID'] ] |
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|
2134 }) |
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|
2135 |
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|
2136 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2137 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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|
2138 |
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|
2139 DropOrthanc(_REMOTE) |
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|
2140 DropOrthanc(_LOCAL) |
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2141 |
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2142 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
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2143 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
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|
2144 |
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2145 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2146 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2147 WaitEmpty(_REMOTE) |
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|
2148 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2149 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2150 |
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2151 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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2152 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2153 WaitEmpty(_REMOTE) |
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2154 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2155 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2156 |
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2157 def test_resources_since_limit(self): |
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2158 # Upload 16 instances |
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2159 for i in range(4): |
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2160 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2161 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2162 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2163 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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2164 |
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2165 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2166 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2167 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2168 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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2169 |
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2170 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2171 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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2172 |
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2173 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2174 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2175 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2176 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2177 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2178 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2179 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2180 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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2181 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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2182 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2183 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2184 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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2185 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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|
2186 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2187 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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|
2188 |
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2189 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2190 s = {} |
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2191 since = 0 |
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2192 while True: |
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2193 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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|
2194 if len(t) == 0: |
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|
2195 break |
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|
2196 |
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|
2197 since += len(t) |
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2198 for i in t: |
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2199 s[i] = None |
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2200 |
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|
2201 self.assertEqual(16, len(s)) |
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2202 for instance in DoGet(_REMOTE, '/instances'): |
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2203 self.assertTrue(instance in s) |
36 | 2204 |
2205 | |
2206 def test_create_pdf(self): | |
2207 # Upload 4 instances | |
2208 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2209 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2210 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2211 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2212 | |
2213 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2214 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2215 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2216 | |
2217 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2218 pdf = f.read() | |
2219 | |
2220 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2221 json.dumps({ | |
2222 'Tags' : { | |
2223 'PatientName' : 'Jodogne', | |
2224 'Modality' : 'CT', | |
2225 }, | |
2226 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2227 })) | |
2228 | |
2229 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2230 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2231 | |
2232 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2233 self.assertEqual(len(b), len(pdf) + 1) | |
2234 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2235 | |
2236 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2237 json.dumps({ | |
2238 'Parent' : brainixPatient, | |
2239 'Tags' : { | |
2240 'PatientName' : 'Jodogne', | |
2241 } | |
2242 }))) | |
2243 | |
2244 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2245 json.dumps({ | |
2246 'Parent' : brainixPatient, | |
2247 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2248 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2249 })) | |
2250 | |
2251 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2252 | |
2253 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2254 json.dumps({ | |
2255 'Parent' : brainixStudy, | |
2256 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2257 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2258 })) | |
2259 | |
2260 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2261 | |
2262 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2263 json.dumps({ | |
2264 'Parent' : brainixEpi, | |
37 | 2265 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2266 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2267 })) | |
2268 | |
2269 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2270 | |
2271 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2272 self.assertEqual(len(b), len(pdf)) | |
2273 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2274 | |
2275 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2276 |
2277 | |
2278 def test_create_series(self): | |
2279 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2280 json.dumps({ | |
2281 'Tags' : { | |
40 | 2282 'SpecificCharacterSet' : 'ISO_IR 100', |
2283 'PatientName' : 'Sébastien Jodogne', | |
38 | 2284 'Modality' : 'CT', |
2285 }, | |
2286 'Content' : [ | |
40 | 2287 { |
2288 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2289 'Tags' : { 'ImageComments' : 'Tutu' } | |
2290 }, | |
38 | 2291 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2292 ] | |
2293 })) | |
2294 | |
2295 s = DoGet(_REMOTE, i['Path']) | |
2296 self.assertEqual('Series', s['Type']) | |
2297 self.assertEqual(s['ID'], i['ID']) | |
2298 self.assertEqual(2, len(s['Instances'])) | |
39 | 2299 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2300 self.assertEqual('Complete', s['Status']) | |
40 | 2301 |
2302 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2303 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2304 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2305 if 'ImageComments' in a: | |
2306 self.assertEqual('Tutu', a['ImageComments']) | |
2307 else: | |
2308 self.assertEqual('Tutu', b['ImageComments']) | |
2309 | |
2310 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2311 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2312 'Sébastien Jodogne') | |
47 | 2313 |
2314 | |
2315 def test_create_binary(self): | |
2316 binary = ''.join(map(chr, range(256))) | |
2317 encoded = 'data:application/octet-stream;base64,' + base64.b64encode(binary) | |
2318 tags = { | |
2319 'PatientName' : 'Jodogne', | |
2320 '8899-8899' : encoded | |
2321 } | |
2322 | |
2323 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2324 json.dumps({ | |
2325 'Tags' : tags | |
2326 })) | |
2327 | |
2328 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2329 self.assertEqual(binary, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID']).strip()) | |
2330 | |
2331 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2332 json.dumps({ | |
2333 'InterpretBinaryTags' : False, | |
2334 'Tags' : tags | |
2335 })) | |
2336 | |
2337 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2338 self.assertEqual(encoded, DoGet(_REMOTE, '/instances/%s/content/8899-8899' % i['ID'])[0:-1]) | |
48
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|
2339 |
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|
2340 |
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changeset
|
2341 def test_patient_ids_collision(self): |
e4352463ff74
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47
diff
changeset
|
2342 # Upload 3 instances from 3 different studies, but with the |
e4352463ff74
test_patient_ids_collision
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47
diff
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|
2343 # same PatientID |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
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47
diff
changeset
|
2344 for i in range(3): |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
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47
diff
changeset
|
2345 UploadInstance(_REMOTE, 'PatientIdsCollision/Image%d.dcm' % (i + 1)) |
e4352463ff74
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diff
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|
2346 |
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diff
changeset
|
2347 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
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47
diff
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|
2348 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
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47
diff
changeset
|
2349 self.assertEqual(1, len(a)) |
e4352463ff74
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47
diff
changeset
|
2350 self.assertEqual('COMMON', DoGet(_REMOTE, '/patients/%s' % a[0]) ['MainDicomTags']['PatientID']) |
e4352463ff74
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|
2351 |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2352 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2353 'CaseSensitive' : True, |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2354 'Query' : { 'PatientName' : 'FOO\\HELLO' }}) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2355 self.assertEqual(2, len(a)) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
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47
diff
changeset
|
2356 |
e4352463ff74
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parents:
47
diff
changeset
|
2357 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2358 'CaseSensitive' : False, |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2359 'Query' : { 'PatientName' : 'Foo' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2360 self.assertEqual(1, len(a)) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2361 self.assertEqual('FOO^SERIES', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['MainDicomTags']['StudyDescription']) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2362 self.assertEqual('FOO', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientName']) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2363 self.assertEqual('COMMON', DoGet(_REMOTE, '/series/%s/study' % a[0]) ['PatientMainDicomTags']['PatientID']) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2364 |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2365 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2366 'Query' : { 'PatientName' : '*' }}) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2367 self.assertEqual(3, len(a)) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2368 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['MainDicomTags']['StudyDescription'], a) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2369 self.assertTrue('FOO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2370 self.assertTrue('HELLO^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2371 self.assertTrue('WORLD^SERIES' in d) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2372 |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2373 d = map(lambda x: DoGet(_REMOTE, '/studies/%s' % x) ['PatientMainDicomTags']['PatientID'], a) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2374 self.assertEqual(1, len(set(d))) |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2375 self.assertEqual('COMMON', d[0]) |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2376 |
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test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2377 for i in a: |
e4352463ff74
test_patient_ids_collision
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2378 d = DoGet(_REMOTE, '/studies/%s' % i) ['MainDicomTags']['StudyDescription'] |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2379 p = DoGet(_REMOTE, '/studies/%s' % i) ['PatientMainDicomTags']['PatientName'] |
e4352463ff74
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
2380 self.assertEqual('%s^SERIES' % p, d) |
49
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2381 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2382 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2383 def test_bitbucket_issue_4(self): |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2384 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2385 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2386 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2387 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2388 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm') |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2389 UploadInstance(_REMOTE, 'Formats/Rle.dcm') |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2390 |
e7f9b8199545
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2391 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2392 self.assertEqual(6, len(DoGet(_REMOTE, '/instances'))) |
e7f9b8199545
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2393 |
e7f9b8199545
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2394 p = DoGet(_REMOTE, '/patients') |
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parents:
48
diff
changeset
|
2395 self.assertEqual(2, len(p)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2396 i1 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[0])) |
e7f9b8199545
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2397 i2 = map(lambda x: x['ID'], DoGet(_REMOTE, '/patients/%s/instances' % p[1])) |
e7f9b8199545
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2398 self.assertEqual(3, len(i1)) |
e7f9b8199545
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2399 self.assertEqual(3, len(i2)) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2400 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2401 j = DoPost(_REMOTE, '/modalities/orthanctest/store', i2[0:1] + i1 + i2[1:3]) |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2402 |
e7f9b8199545
test_bitbucket_issue_4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
48
diff
changeset
|
2403 self.assertEqual(6, len(DoGet(_LOCAL, '/instances'))) |
50
8de63d56cf11
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49
diff
changeset
|
2404 |
8de63d56cf11
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49
diff
changeset
|
2405 |
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49
diff
changeset
|
2406 def test_create_sequence(self): |
8de63d56cf11
test_create_sequence
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49
diff
changeset
|
2407 i = DoPost(_REMOTE, '/tools/create-dicom', |
8de63d56cf11
test_create_sequence
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parents:
49
diff
changeset
|
2408 json.dumps({ |
8de63d56cf11
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49
diff
changeset
|
2409 'Tags' : { |
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49
diff
changeset
|
2410 'SpecificCharacterSet': 'ISO_IR 100', # Encode using Latin1 |
8de63d56cf11
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parents:
49
diff
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|
2411 'PatientName': 'Jodogne^', |
51
264a20a0276d
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50
diff
changeset
|
2412 'ReferencedStudySequence': GenerateTestSequence(), |
50
8de63d56cf11
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49
diff
changeset
|
2413 } |
8de63d56cf11
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49
diff
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|
2414 }))['ID'] |
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49
diff
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|
2415 |
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49
diff
changeset
|
2416 self.assertEqual('Jodogne^', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i)) |
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49
diff
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|
2417 self.assertEqual('Hello^', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/StudyDescription' % i)) |
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diff
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|
2418 self.assertEqual('Toto', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/0/StudyDescription' % i)) |
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49
diff
changeset
|
2419 self.assertEqual('Tata', DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/0/ReferencedStudySequence/1/StudyDescription' % i)) |
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49
diff
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|
2420 self.assertEqual(u'Sébastien^'.encode('latin-1'), |
8de63d56cf11
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49
diff
changeset
|
2421 DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence/1/StudyDescription' % i)) |
51
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50
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|
2422 |
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50
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|
2423 |
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50
diff
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|
2424 def test_modify_sequence(self): |
264a20a0276d
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diff
changeset
|
2425 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
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changeset
|
2426 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % i)) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2427 |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2428 j = DoPost(_REMOTE, '/instances/%s/modify' % i, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2429 json.dumps({ |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2430 "Replace" : { |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2431 "PatientName" : "hello", |
264a20a0276d
test_modify_sequence
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parents:
50
diff
changeset
|
2432 'ReferencedStudySequence': GenerateTestSequence(), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2433 }, |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2434 }), |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2435 'application/json') |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2436 j = DoPost(_REMOTE, '/instances', j, 'application/dicom')['ID'] |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2437 DoDelete(_REMOTE, '/instances/%s' % i) |
264a20a0276d
test_modify_sequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
50
diff
changeset
|
2438 |
52 | 2439 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/ReferencedStudySequence' % j))) |
2440 | |
2441 | |
2442 def test_compression(self): | |
2443 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
2444 | |
2445 data = DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % i)[1] | |
2446 | |
2447 # "StorageCompression" is enabled in the Orthanc to be tested, | |
2448 # uncompress the data before running the test | |
2449 if DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i) != 0: | |
2450 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2451 | |
2452 cs = DoGet(_REMOTE, '/statistics')['TotalDiskSize'] | |
2453 us = DoGet(_REMOTE, '/statistics')['TotalUncompressedSize'] | |
2454 size = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i) | |
2455 md5 = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i) | |
2456 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2457 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2458 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2459 | |
2460 ops = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % i) | |
2461 self.assertTrue('compress' in ops) | |
2462 self.assertTrue('uncompress' in ops) | |
2463 self.assertTrue('is-compressed' in ops) | |
2464 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2465 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2466 | |
2467 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/compress' % i) | |
2468 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2469 self.assertEqual(1, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2470 self.assertLess(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2471 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
2472 self.assertGreater(len(data), len(DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1])) | |
2473 self.assertGreater(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2474 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2475 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2476 self.assertNotEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2477 | |
2478 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/uncompress' % i) | |
2479 DoPost(_REMOTE, '/instances/%s/attachments/dicom-as-json/verify-md5' % i) | |
2480 self.assertEqual(0, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/is-compressed' % i)) | |
2481 self.assertEqual(data, DoGetRaw(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-data' % i)[1]) | |
2482 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-size' % i)) | |
2483 self.assertEqual(size, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/size' % i)) | |
2484 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/md5' % i)) | |
2485 self.assertEqual(md5, DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/compressed-md5' % i)) | |
2486 self.assertEqual(cs, DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
2487 self.assertEqual(us, DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
53 | 2488 |
2489 | |
2490 def test_ordered_slices(self): | |
2491 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2492 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2493 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2494 self.assertEqual('Sequence', o['Type']) | |
2495 self.assertEqual(1, len(o['Dicom'])) | |
2496 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/file', o['Dicom'][0]) | |
2497 self.assertEqual(76, len(o['Slices'])) | |
2498 for j in range(76): | |
2499 self.assertEqual('/instances/9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02/frames/%d' % j, o['Slices'][j]) | |
2500 | |
68 | 2501 self.assertEqual(1, len(o['SlicesShort'])) |
2502 self.assertEqual('9e05eb0a-18b6268c-e0d36085-8ddab517-3b5aec02', o['SlicesShort'][0][0]) | |
2503 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2504 self.assertEqual(76, o['SlicesShort'][0][2]) | |
2505 | |
53 | 2506 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2507 j = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm')['ID'] | |
2508 k = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0003.dcm')['ID'] | |
2509 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2510 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2511 | |
2512 self.assertEqual('Volume', o['Type']) | |
2513 self.assertEqual(3, len(o['Dicom'])) | |
2514 self.assertEqual(3, len(o['Slices'])) | |
2515 self.assertEqual('/instances/%s/file' % i, o['Dicom'][2]) | |
2516 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2517 self.assertEqual('/instances/%s/file' % k, o['Dicom'][0]) | |
2518 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][2]) | |
2519 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
2520 self.assertEqual('/instances/%s/frames/0' % k, o['Slices'][0]) | |
2521 | |
68 | 2522 self.assertEqual(3, len(o['SlicesShort'])) |
2523 self.assertEqual(k, o['SlicesShort'][0][0]) | |
2524 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2525 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2526 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2527 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2528 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2529 self.assertEqual(i, o['SlicesShort'][2][0]) | |
2530 self.assertEqual(0, o['SlicesShort'][2][1]) | |
2531 self.assertEqual(1, o['SlicesShort'][2][2]) | |
2532 | |
53 | 2533 i = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] |
2534 j = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0002.dcm')['ID'] | |
2535 s = DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries'] | |
2536 o = DoGet(_REMOTE, '/series/%s/ordered-slices' % s) | |
2537 | |
2538 self.assertEqual('Sequence', o['Type']) | |
2539 self.assertEqual(2, len(o['Dicom'])) | |
2540 self.assertEqual(2, len(o['Slices'])) | |
2541 self.assertEqual('/instances/%s/file' % i, o['Dicom'][0]) | |
2542 self.assertEqual('/instances/%s/file' % j, o['Dicom'][1]) | |
2543 self.assertEqual('/instances/%s/frames/0' % i, o['Slices'][0]) | |
2544 self.assertEqual('/instances/%s/frames/0' % j, o['Slices'][1]) | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2545 |
68 | 2546 self.assertEqual(2, len(o['SlicesShort'])) |
2547 self.assertEqual(i, o['SlicesShort'][0][0]) | |
2548 self.assertEqual(0, o['SlicesShort'][0][1]) | |
2549 self.assertEqual(1, o['SlicesShort'][0][2]) | |
2550 self.assertEqual(j, o['SlicesShort'][1][0]) | |
2551 self.assertEqual(0, o['SlicesShort'][1][1]) | |
2552 self.assertEqual(1, o['SlicesShort'][1][2]) | |
2553 | |
2554 | |
54
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2555 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2556 def test_incoming_movescu_accession(self): |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2557 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2558 |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2559 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2560 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=nope' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2561 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2562 CallMoveScu([ '--study', '-k', '0008,0052=PATIENT', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2563 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
53
diff
changeset
|
2564 CallMoveScu([ '--study', '-k', '0008,0052=STUDY', '-k', 'AccessionNumber=A10003245599' ]) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2565 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) |
c5f8a6b0d85e
test_incoming_movescu_accession
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parents:
53
diff
changeset
|
2566 |
55 | 2567 |
2568 def test_dicom_to_json(self): | |
2569 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2570 j = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
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|
2571 |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
59
diff
changeset
|
2572 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i) |
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
59
diff
changeset
|
2573 with open(GetDatabasePath('PrivateMDNTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2574 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
8466dbfcb22b
fix test against dcmtk 3.6.1
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parents:
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diff
changeset
|
2575 'ACR_NEMA_2C_VariablePixelDataGroupLength', |
8466dbfcb22b
fix test against dcmtk 3.6.1
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parents:
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diff
changeset
|
2576 'GenericGroupLength' |
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fix test against dcmtk 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
79
diff
changeset
|
2577 ])) |
55 | 2578 |
2579 t = DoGet(_REMOTE, '/instances/%s/tags' % i) | |
2580 with open(GetDatabasePath('PrivateMDNTagsFull.json'), 'r') as f: | |
80
8466dbfcb22b
fix test against dcmtk 3.6.1
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parents:
79
diff
changeset
|
2581 self.assertTrue(CompareTags(t, json.loads(f.read()), [ '7fe0,0000' ])) |
55 | 2582 |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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parents:
59
diff
changeset
|
2583 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % j) |
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test backward compatibility with Orthanc 0.9.4
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parents:
59
diff
changeset
|
2584 with open(GetDatabasePath('PrivateTagsSimplify.json'), 'r') as f: |
80
8466dbfcb22b
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parents:
79
diff
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|
2585 self.assertTrue(CompareTags(t, json.loads(f.read()), [ |
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diff
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|
2586 ])) |
60
cd3c7f70f139
test backward compatibility with Orthanc 0.9.4
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diff
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|
2587 |
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2588 t = DoGet(_REMOTE, '/instances/%s/tags' % j) |
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2589 with open(GetDatabasePath('PrivateTagsFull.json'), 'r') as f: |
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test backward compatibility with Orthanc 0.9.4
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diff
changeset
|
2590 a = json.loads(f.read()) |
65
09fc27e0899a
patch for testing windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
64
diff
changeset
|
2591 aa = json.dumps(a).replace('2e+022', '2e+22') |
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diff
changeset
|
2592 tt = json.dumps(t).replace('2e+022', '2e+22') |
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diff
changeset
|
2593 self.assertEqual(aa, tt) |
57 | 2594 |
2595 | |
2596 def test_batch_archive(self): | |
2597 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2598 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') | |
2599 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2600 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0002.dcm') | |
2601 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2602 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0002.dcm') | |
2603 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2604 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2605 | |
2606 s = DoPost(_REMOTE, '/tools/create-archive', [ ]) | |
2607 z = zipfile.ZipFile(StringIO(s), "r") | |
2608 self.assertEqual(0, len(z.namelist())) | |
2609 | |
2610 # One patient | |
2611 s = DoPost(_REMOTE, '/tools/create-archive', [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ]) | |
2612 z = zipfile.ZipFile(StringIO(s), "r") | |
2613 self.assertEqual(4, len(z.namelist())) | |
2614 | |
2615 # One patient + twice its study + one series from other patient | |
2616 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2617 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2618 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
2619 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
2620 ]) | |
2621 z = zipfile.ZipFile(StringIO(s), "r") | |
2622 self.assertEqual(6, len(z.namelist())) | |
2623 | |
2624 # One patient + one series + one instance | |
2625 s = DoPost(_REMOTE, '/tools/create-archive', [ | |
2626 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
2627 '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0', | |
2628 '1d429ccb-bdcc78a1-7d129d6a-ba4966ed-fe4dbd87' | |
2629 ]) | |
2630 z = zipfile.ZipFile(StringIO(s), "r") | |
2631 self.assertEqual(7, len(z.namelist())) | |
59
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test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2632 |
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test_decode_brainix_as_jpeg
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diff
changeset
|
2633 |
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test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2634 def test_decode_brainix_as_jpeg(self): |
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
58
diff
changeset
|
2635 i = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
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test_decode_brainix_as_jpeg
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|
2636 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2637 j = GetImage(_REMOTE, '/instances/%s/preview' % i) |
84378ada15ab
test_decode_brainix_as_jpeg
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parents:
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diff
changeset
|
2638 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2639 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2640 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2641 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2642 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : '*/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2643 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2644 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2645 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/*' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2646 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2647 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2648 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/png' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2649 self.assertEqual('PNG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2650 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2651 j = GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2652 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2653 self.assertEqual(j.size[0], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2654 self.assertEqual(j.size[1], 256) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2655 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2656 a = len(DoGet(_REMOTE, '/instances/%s/preview?quality=50' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2657 b = len(DoGet(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2658 self.assertLess(a, b) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2659 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2660 j = GetImage(_REMOTE, '/instances/%s/image-uint8' % i, headers = { 'Accept' : 'image/jpeg' }) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2661 self.assertEqual('JPEG', j.format) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2662 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2663 # 16bit encoding is not supported with JPEG |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2664 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-uint16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2665 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/image-int16' % i, headers = { 'Accept' : 'image/jpeg' })) |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2666 |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2667 # No matching content type |
84378ada15ab
test_decode_brainix_as_jpeg
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
58
diff
changeset
|
2668 self.assertRaises(Exception, lambda: GetImage(_REMOTE, '/instances/%s/preview' % i, headers = { 'Accept' : 'application/pdf' })) |
69
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2669 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2670 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2671 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2672 def test_media_encodings(self): |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2673 ascii = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2674 latin1 = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2675 latin2 = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2676 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2677 tmp = DoPost(_REMOTE, '/tools/create-media', [ascii,latin1,latin2]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2678 z = zipfile.ZipFile(StringIO(tmp), "r") |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2679 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2680 self.assertEqual(4, len(z.namelist())) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2681 self.assertTrue('IMAGES/IM0' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2682 self.assertTrue('IMAGES/IM1' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2683 self.assertTrue('IMAGES/IM2' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2684 self.assertTrue('DICOMDIR' in z.namelist()) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2685 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2686 try: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2687 os.remove('/tmp/DICOMDIR') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2688 except: |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2689 # The file does not exist |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2690 pass |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2691 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2692 z.extract('DICOMDIR', '/tmp') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2693 a = subprocess.check_output([ FindExecutable('dciodvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2694 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2695 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2696 a = subprocess.check_output([ FindExecutable('dcentvfy'), '/tmp/DICOMDIR' ], |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2697 stderr = subprocess.STDOUT).split('\n') |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2698 self.assertEqual(1, len(a)) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2699 self.assertEqual('', a[0]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2700 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2701 a = subprocess.check_output([ FindExecutable('dcm2xml'), '/tmp/DICOMDIR' ]) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2702 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2703 self.assertTrue(re.search('1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114333648576', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2704 self.assertTrue(re.search('1.2.826.0.1.3680043.2.1569.1.4.323026757.1700.1399452091.57', a) != None) |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2705 |
83fd88230097
test_media_encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
68
diff
changeset
|
2706 os.remove('/tmp/DICOMDIR') |
71
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2707 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2708 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2709 def test_findscu_counters(self): |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2710 UploadInstance(_REMOTE, 'Comunix/Ct/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2711 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0001.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2712 UploadInstance(_REMOTE, 'Comunix/Pet/IM-0001-0002.dcm') |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2713 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2714 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedStudies' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2715 s = re.findall('\(0020,1200\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2716 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2717 self.assertTrue('1 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2718 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2719 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2720 s = re.findall('\(0020,1202\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2721 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2722 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2723 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2724 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', 'NumberOfPatientRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2725 s = re.findall('\(0020,1204\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2726 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2727 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2728 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2729 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedSeries' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2730 s = re.findall('\(0020,1206\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2731 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2732 self.assertTrue('2 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2733 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2734 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'NumberOfStudyRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2735 s = re.findall('\(0020,1208\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2736 self.assertEqual(1, len(s)) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2737 self.assertTrue('3 ' in s) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2738 |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2739 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'NumberOfSeriesRelatedInstances' ]) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2740 s = re.findall('\(0020,1209\).*?\[(.*?)\]', i) |
48740070cbf1
TDD: tests for ongoing development of counter tags in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2741 self.assertEqual(2, len(s)) |
48740070cbf1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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2742 self.assertTrue('1 ' in s) |
48740070cbf1
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parents:
70
diff
changeset
|
2743 self.assertTrue('2 ' in s) |
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parents:
70
diff
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|
2744 |
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diff
changeset
|
2745 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'ModalitiesInStudy' ]) |
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70
diff
changeset
|
2746 s = re.findall('\(0008,0061\).*?\[(.*?)\]', i) |
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parents:
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diff
changeset
|
2747 self.assertEqual(1, len(s)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2748 t = map(lambda x: x.strip(), s[0].split('\\')) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2749 self.assertTrue('PT' in t) |
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parents:
70
diff
changeset
|
2750 self.assertTrue('CT' in t) |
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parents:
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diff
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|
2751 |
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parents:
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diff
changeset
|
2752 i = CallFindScu([ '-k', '0008,0052=STUDY', '-k', 'SOPClassesInStudy' ]) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2753 s = re.findall('\(0008,0062\).*?\[(.*?)\]', i) |
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parents:
70
diff
changeset
|
2754 self.assertEqual(1, len(s)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
70
diff
changeset
|
2755 t = map(lambda x: x.strip(), s[0].split('\\')) |
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parents:
70
diff
changeset
|
2756 self.assertTrue('1.2.840.10008.5.1.4.1.1.2' in t) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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70
diff
changeset
|
2757 self.assertTrue('1.2.840.10008.5.1.4.1.1.128' in t) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2758 |
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diff
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|
2759 |
78
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parents:
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diff
changeset
|
2760 def test_decode_transfer_syntax(self): |
b89af51797ff
test_decode_transfer_syntax
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74
diff
changeset
|
2761 def Check(t, md5): |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2762 i = UploadInstance(_REMOTE, 'TransferSyntaxes/%s.dcm' % t)['ID'] |
b89af51797ff
test_decode_transfer_syntax
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parents:
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diff
changeset
|
2763 |
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parents:
74
diff
changeset
|
2764 if md5 == None: |
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test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2765 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
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parents:
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diff
changeset
|
2766 else: |
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parents:
74
diff
changeset
|
2767 m = ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % i)) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2768 self.assertEqual(m, md5) |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2769 |
b89af51797ff
test_decode_transfer_syntax
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2770 Check('1.2.840.10008.1.2.1', 'fae08d5415c4c0cd2cdbae4522408631') |
b89af51797ff
test_decode_transfer_syntax
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parents:
74
diff
changeset
|
2771 Check('1.2.840.10008.1.2.2', 'f3d9784768b8feb54d6a50b6d5c37682') |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2772 Check('1.2.840.10008.1.2.4.50', '496326046974eea718dbc16b997c646b') |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2773 Check('1.2.840.10008.1.2.4.51', 'ccbe75909fe5c9f7361b48416a53fc41') |
b89af51797ff
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parents:
74
diff
changeset
|
2774 Check('1.2.840.10008.1.2.4.57', '7bbefe11d976b1be4e568915c6a82fc3') |
b89af51797ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2775 Check('1.2.840.10008.1.2.4.70', '7132cfbc457305b04b59787030c785d2') |
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74
diff
changeset
|
2776 Check('1.2.840.10008.1.2.4.80', '6ff51ae525d362e0d04f550a64075a0e') |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
74
diff
changeset
|
2777 Check('1.2.840.10008.1.2.4.81', '801579ae7cbf28e604ea74f2c99fa2ca') |
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parents:
74
diff
changeset
|
2778 Check('1.2.840.10008.1.2.5', '6ff51ae525d362e0d04f550a64075a0e') # RLE, supported since Orthanc 1.0.1 |
b89af51797ff
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parents:
74
diff
changeset
|
2779 Check('1.2.840.10008.1.2', 'd54aed9f67a100984b42942cc2e9939b') |
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parents:
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diff
changeset
|
2780 Check('1.2.840.10008.1.2.4.90', None) # JPEG-2000 image, not supported |
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parents:
74
diff
changeset
|
2781 Check('1.2.840.10008.1.2.4.91', None) # JPEG-2000 image, not supported |
79 | 2782 |
2783 | |
2784 def test_raw_frame(self): | |
2785 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
2786 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2787 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2788 self.assertEqual(512 * 512 * 2, len(a)) | |
2789 self.assertEqual(512 * 512 * 2, len(DoGet(_REMOTE, '/instances/%s/frames/23/raw' % s))) | |
2790 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/raw' % s)) | |
2791 self.assertEqual('1914287dc4d958eca21fdaacfb3482fa', ComputeMD5(a)) | |
2792 | |
2793 s = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] | |
2794 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2795 self.assertEqual(186274, len(DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s))) | |
2796 self.assertEqual(189424, len(DoGet(_REMOTE, '/instances/%s/frames/75/raw' % s))) | |
2797 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/raw' % s)) | |
2798 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2799 self.assertEqual("L", im.mode) | |
2800 self.assertEqual(512, im.size[0]) | |
2801 self.assertEqual(512, im.size[1]) | |
2802 | |
2803 # Test an image with 2 JPEG frames spread over multiple fragments | |
2804 s = UploadInstance(_REMOTE, 'LenaTwiceWithFragments.dcm')['ID'] | |
2805 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
2806 a = DoGet(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2807 b = DoGet(_REMOTE, '/instances/%s/frames/1/raw' % s) | |
2808 self.assertEqual(69214, len(a)) | |
2809 self.assertEqual(ComputeMD5(a), ComputeMD5(b)) | |
2810 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/2/raw' % s)) | |
2811 im = GetImage(_REMOTE, '/instances/%s/frames/0/raw' % s) | |
2812 self.assertEqual("RGB", im.mode) | |
2813 self.assertEqual(512, im.size[0]) | |
2814 self.assertEqual(512, im.size[1]) | |
2815 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % s) | |
2816 self.assertEqual("RGB", im.mode) | |
2817 self.assertEqual(512, im.size[0]) | |
2818 self.assertEqual(512, im.size[1]) | |
81 | 2819 |
2820 | |
2821 | |
2822 def test_rest_movescu(self): | |
2823 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2824 | |
2825 # Upload 4 instances | |
2826 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
2827 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0002.dcm') | |
2828 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2829 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2830 | |
2831 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2832 for p in DoGet(_REMOTE, '/patients'): | |
2833 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
2834 DoDelete(_REMOTE, '/patients/%s' % p) | |
2835 | |
2836 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2837 | |
2838 # Upload instance Brainix/Flair/IM-0001-0001.dcm | |
2839 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Instance', | |
2840 'Resources' : [ | |
2841 { | |
2842 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2843 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
2844 'SOPInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549', | |
2845 } | |
2846 ]}) | |
2847 | |
2848 # Upload series Brainix/Flair/* | |
2849 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2850 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2851 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
2852 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
2853 | |
2854 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
2855 'Resources' : [ | |
2856 { | |
2857 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2858 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497', | |
2859 } | |
2860 ]}) | |
2861 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2862 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2863 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
2864 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
2865 | |
2866 # Upload series Brainix/Epi/* | |
2867 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Series', | |
2868 'Resources' : [ | |
2869 { | |
2870 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2871 'SeriesInstanceUID' : '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314125550', | |
2872 } | |
2873 ]}) | |
2874 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
2875 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
2876 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
2877 self.assertEqual(3, len(DoGet(_REMOTE, '/instances'))) | |
2878 | |
2879 # Upload study Knee/* | |
2880 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
2881 'Resources' : [ | |
2882 { | |
2883 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
2884 } | |
2885 ]}) | |
2886 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2887 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
2888 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
2889 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
2890 | |
2891 # Reset | |
2892 for p in DoGet(_REMOTE, '/patients'): | |
2893 DoDelete(_REMOTE, '/patients/%s' % p) | |
2894 | |
2895 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
2896 | |
2897 | |
2898 # Upload all at once | |
2899 DoPost(_REMOTE, '/modalities/orthanctest/move', { 'Level' : 'Study', | |
2900 'Resources' : [ | |
2901 { | |
2902 'StudyInstanceUID' : '2.16.840.1.113669.632.20.121711.10000160881', | |
2903 }, | |
2904 { | |
2905 'StudyInstanceUID' : '2.16.840.1.113669.632.20.1211.10000357775', | |
2906 } | |
2907 ]}) | |
2908 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
2909 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) | |
2910 self.assertEqual(3, len(DoGet(_REMOTE, '/series'))) | |
2911 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
2912 | |
86
0401ef51f5c1
test_reconstruct_json
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diff
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|
2913 |
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diff
changeset
|
2914 |
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diff
changeset
|
2915 def test_reconstruct_json(self): |
0401ef51f5c1
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parents:
83
diff
changeset
|
2916 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
0401ef51f5c1
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diff
changeset
|
2917 |
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diff
changeset
|
2918 instance = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
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diff
changeset
|
2919 first = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
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|
2920 |
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83
diff
changeset
|
2921 self.assertEqual('TWINOW', first['0008,1010']['Value']) |
0401ef51f5c1
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diff
changeset
|
2922 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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diff
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|
2923 |
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diff
changeset
|
2924 # Cannot delete the "DICOM" attachment |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2925 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) |
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diff
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|
2926 |
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diff
changeset
|
2927 # Can delete the "DICOM as JSON" attachment |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2928 r = DoDelete(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance) |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
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83
diff
changeset
|
2929 self.assertTrue(type(r) is dict and len(r) == 0) |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2930 |
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diff
changeset
|
2931 # Only the "DICOM" attachment subsists |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2932 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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|
2933 |
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diff
changeset
|
2934 # Cannot manually reconstruct the "DICOM as JSON" attachment |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2935 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/dicom-as-json' % patient, 'hello')) |
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changeset
|
2936 |
0401ef51f5c1
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diff
changeset
|
2937 # Transparently reconstruct the "DICOM as JSON" attachment |
0401ef51f5c1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2938 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json' % instance)) |
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diff
changeset
|
2939 second = DoGet(_REMOTE, '/instances/%s/tags' % instance) |
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2940 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) |
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test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2941 |
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test_reconstruct_json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2942 third = DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2943 self.assertEqual(str(first), str(second)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2944 self.assertEqual(str(first), str(third)) |