Mercurial > hg > orthanc-tests
annotate Tests/Tests.py @ 43:5f3bcdde2461
fix
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 25 Aug 2015 13:02:43 +0200 |
parents | 8fb14554b27c |
children | ffa542cce638 |
rev | line source |
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22 | 1 #!/usr/bin/env python |
2 # -*- coding: utf-8 -*- | |
3 | |
4 | |
3 | 5 # Orthanc - A Lightweight, RESTful DICOM Store |
6 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics | |
7 # Department, University Hospital of Liege, Belgium | |
8 # | |
9 # This program is free software: you can redistribute it and/or | |
10 # modify it under the terms of the GNU General Public License as | |
11 # published by the Free Software Foundation, either version 3 of the | |
12 # License, or (at your option) any later version. | |
13 # | |
14 # This program is distributed in the hope that it will be useful, but | |
15 # WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
17 # General Public License for more details. | |
18 # | |
19 # You should have received a copy of the GNU General Public License | |
20 # along with this program. If not, see <http://www.gnu.org/licenses/>. | |
21 | |
22 | |
14 | 23 import tempfile |
3 | 24 import unittest |
36 | 25 import base64 |
3 | 26 |
11 | 27 from PIL import ImageChops |
3 | 28 from Toolbox import * |
13 | 29 from xml.dom import minidom |
3 | 30 |
31 _LOCAL = None | |
32 _REMOTE = None | |
33 | |
34 | |
35 def SetOrthancParameters(local, remote): | |
36 global _LOCAL, _REMOTE | |
37 _LOCAL = local | |
38 _REMOTE = remote | |
39 | |
40 | |
14 | 41 def ExtractDicomTags(rawDicom, tags): |
42 with tempfile.NamedTemporaryFile(delete = True) as f: | |
43 f.write(rawDicom) | |
44 f.flush() | |
45 data = subprocess.check_output([ 'dcm2xml', f.name ]) | |
46 | |
47 result = [] | |
48 for tag in tags: | |
49 match = re.search('<element[^>]+name="%s">([^>]*)</element>' % tag, data) | |
50 if match == None: | |
51 result.append('') | |
52 else: | |
53 result.append(match.group(1)) | |
54 | |
55 return result | |
56 | |
57 | |
15 | 58 def InstallLuaScript(path): |
59 with open(GetDatabasePath(path), 'r') as f: | |
60 DoPost(_REMOTE, '/tools/execute-script', f.read(), 'application/lua') | |
61 | |
62 | |
63 def UninstallLuaCallbacks(): | |
64 DoPost(_REMOTE, '/tools/execute-script', 'function OnStoredInstance() end', 'application/lua') | |
43 | 65 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
15 | 66 |
67 | |
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68 def CompareLists(a, b): |
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69 if len(a) != len(b): |
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70 return False |
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71 |
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72 for i in range(len(a)): |
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73 d = a[i] - b[i] |
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74 if abs(d) >= 0.51: # Add some tolerance for rounding errors |
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75 return False |
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76 |
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77 return True |
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78 |
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79 |
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80 |
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81 |
15 | 82 |
3 | 83 class Orthanc(unittest.TestCase): |
84 def setUp(self): | |
85 DropOrthanc(_LOCAL) | |
86 DropOrthanc(_REMOTE) | |
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87 UninstallLuaCallbacks() |
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88 #print "In test", self._testMethodName |
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89 |
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90 def AssertSameImages(self, truth, url): |
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91 im = GetImage(_REMOTE, url) |
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92 self.assertTrue(CompareLists(truth, im.getdata())) |
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93 |
3 | 94 |
95 def test_system(self): | |
96 self.assertTrue('Version' in DoGet(_REMOTE, '/system')) | |
97 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
98 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
99 | |
100 def test_upload(self): | |
101 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
102 self.assertEqual('Success', u['Status']) | |
103 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
104 self.assertEqual('AlreadyStored', u['Status']) | |
105 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
106 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
107 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
108 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
109 | |
110 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % u['ID']) | |
111 self.assertEqual('20070101', i['StudyDate']) | |
112 | |
113 | |
5 | 114 def test_upload_2(self): |
3 | 115 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] |
116 instance = DoGet(_REMOTE, '/instances/%s' % i) | |
117 self.assertEqual(i, instance['ID']) | |
118 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', | |
119 instance['MainDicomTags']['SOPInstanceUID']) | |
120 | |
121 series = DoGet(_REMOTE, '/series/%s' % instance['ParentSeries']) | |
122 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
123 series['MainDicomTags']['SeriesInstanceUID']) | |
124 | |
125 study = DoGet(_REMOTE, '/studies/%s' % series['ParentStudy']) | |
126 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
127 study['MainDicomTags']['StudyInstanceUID']) | |
128 | |
129 patient = DoGet(_REMOTE, '/patients/%s' % study['ParentPatient']) | |
130 self.assertEqual('ozp00SjY2xG', | |
131 patient['MainDicomTags']['PatientID']) | |
132 | |
133 dicom = DoGet(_REMOTE, '/instances/%s/file' % instance['ID']) | |
134 self.assertEqual(2472, len(dicom)) | |
135 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom)) | |
136 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
137 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/simplified-tags' % i)['StationName']) | |
138 self.assertEqual('TWINOW', DoGet(_REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value']) | |
139 | |
140 | |
5 | 141 def test_images(self): |
142 i = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] | |
143 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
3 | 144 |
5 | 145 im = GetImage(_REMOTE, '/instances/%s/preview' % i) |
146 self.assertEqual("L", im.mode) | |
147 self.assertEqual(512, im.size[0]) | |
148 self.assertEqual(358, im.size[1]) | |
149 | |
150 im = GetImage(_REMOTE, '/instances/%s/image-uint8' % i) | |
151 self.assertEqual("L", im.mode) | |
152 self.assertEqual(512, im.size[0]) | |
153 self.assertEqual(358, im.size[1]) | |
154 | |
155 im = GetImage(_REMOTE, '/instances/%s/image-uint16' % i) | |
156 self.assertEqual(512, im.size[0]) | |
157 self.assertEqual(358, im.size[1]) | |
158 | |
159 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
160 self.assertEqual("L", im.mode) | |
161 self.assertEqual(512, im.size[0]) | |
162 self.assertEqual(358, im.size[1]) | |
163 | |
164 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
165 self.assertEqual("L", im.mode) | |
166 self.assertEqual(512, im.size[0]) | |
167 self.assertEqual(358, im.size[1]) | |
168 | |
169 im = GetImage(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
170 self.assertEqual(512, im.size[0]) | |
171 self.assertEqual(358, im.size[1]) | |
172 | |
6 | 173 |
174 def test_hierarchy(self): | |
175 UploadFolder(_REMOTE, 'Brainix/Epi') | |
176 UploadFolder(_REMOTE, 'Brainix/Flair') | |
177 UploadFolder(_REMOTE, 'Knee/T1') | |
178 UploadFolder(_REMOTE, 'Knee/T2') | |
179 | |
180 p = DoGet(_REMOTE, '/patients') | |
181 s = DoGet(_REMOTE, '/studies') | |
182 t = DoGet(_REMOTE, '/series') | |
183 self.assertEqual(2, len(p)) | |
184 self.assertEqual(2, len(s)) | |
185 self.assertEqual(4, len(t)) | |
186 self.assertEqual(94, len(DoGet(_REMOTE, '/instances'))) | |
187 | |
188 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
189 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
190 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
191 brainixFlair = '1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0' | |
192 | |
193 kneePatient = 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' | |
194 kneeStudy = '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' | |
195 kneeT1 = '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' | |
196 kneeT2 = 'bbf7a453-0d34251a-03663b55-46bb31b9-ffd74c59' | |
197 | |
198 self.assertTrue(brainixPatient in p) | |
199 self.assertTrue(kneePatient in p) | |
200 self.assertTrue(brainixStudy in s) | |
201 self.assertTrue(kneeStudy in s) | |
202 self.assertTrue(brainixEpi in t) | |
203 self.assertTrue(brainixFlair in t) | |
204 self.assertTrue(kneeT1 in t) | |
205 self.assertTrue(kneeT2 in t) | |
206 | |
207 self.assertEqual(44, len(DoGet(_REMOTE, '/patients/%s/instances' % brainixPatient))) | |
208 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % brainixPatient))) | |
209 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % brainixPatient))) | |
210 | |
211 self.assertEqual(50, len(DoGet(_REMOTE, '/patients/%s/instances' % kneePatient))) | |
212 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/series' % kneePatient))) | |
213 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/studies' % kneePatient))) | |
214 | |
215 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % brainixStudy))) | |
216 self.assertEqual(44, len(DoGet(_REMOTE, '/studies/%s/instances' % brainixStudy))) | |
217 | |
218 self.assertEqual(2, len(DoGet(_REMOTE, '/studies/%s/series' % kneeStudy))) | |
219 self.assertEqual(50, len(DoGet(_REMOTE, '/studies/%s/instances' % kneeStudy))) | |
220 | |
221 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixEpi))) | |
222 self.assertEqual(22, len(DoGet(_REMOTE, '/series/%s/instances' % brainixFlair))) | |
223 self.assertEqual(24, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT1))) | |
224 self.assertEqual(26, len(DoGet(_REMOTE, '/series/%s/instances' % kneeT2))) | |
225 | |
226 for patient in p: | |
227 for study in DoGet(_REMOTE, '/patients/%s/studies' % patient): | |
228 self.assertEqual(patient, study['ParentPatient']) | |
229 for series in DoGet(_REMOTE, '/studies/%s/series' % study['ID']): | |
230 self.assertEqual(study['ID'], series['ParentStudy']) | |
231 for instance in DoGet(_REMOTE, '/series/%s/instances' % series['ID']): | |
232 self.assertEqual(series['ID'], instance['ParentSeries']) | |
233 | |
234 self.assertEqual(json.dumps(DoGet(_REMOTE, '/instances/%s/attachments/dicom-as-json/data' % instance['ID'])), | |
235 json.dumps(DoGet(_REMOTE, '/instances/%s/tags' % instance['ID']))) | |
236 | |
237 | |
238 r = DoDelete(_REMOTE, "/studies/%s" % brainixStudy)['RemainingAncestor'] | |
239 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
240 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
241 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
242 self.assertEqual(50, len(DoGet(_REMOTE, '/instances'))) | |
243 self.assertEqual(None, r) | |
244 | |
245 r = DoDelete(_REMOTE, "/series/%s" % kneeT2)['RemainingAncestor'] | |
246 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
247 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
248 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
249 self.assertEqual(24, len(DoGet(_REMOTE, '/instances'))) | |
250 self.assertEqual('Study', r['Type']) | |
251 self.assertEqual(kneeStudy, r['ID']) | |
252 | |
253 r = DoDelete(_REMOTE, "/instances/%s" % DoGet(_REMOTE, '/instances')[0])['RemainingAncestor'] | |
254 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
255 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
256 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
257 self.assertEqual(23, len(DoGet(_REMOTE, '/instances'))) | |
258 self.assertEqual('Series', r['Type']) | |
259 self.assertEqual(kneeT1, r['ID']) | |
260 | |
261 r = DoDelete(_REMOTE, "/patients/%s" % kneePatient)['RemainingAncestor'] | |
262 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
263 self.assertEqual(0, len(DoGet(_REMOTE, '/studies'))) | |
264 self.assertEqual(0, len(DoGet(_REMOTE, '/series'))) | |
265 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
266 self.assertEqual(None, r) | |
267 | |
268 DropOrthanc(_REMOTE) | |
269 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalDiskSize']) | |
270 self.assertEqual('0', DoGet(_REMOTE, '/statistics')['TotalUncompressedSize']) | |
7 | 271 |
272 | |
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273 def test_multiframe(self): |
7 | 274 i = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
275 self.assertEqual(76, len(DoGet(_REMOTE, '/instances/%s/frames' % i))) | |
276 | |
277 im = GetImage(_REMOTE, '/instances/%s/frames/0/preview' % i) | |
278 self.assertEqual("L", im.mode) | |
279 self.assertEqual(512, im.size[0]) | |
280 self.assertEqual(512, im.size[1]) | |
281 | |
282 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint8' % i) | |
283 DoGet(_REMOTE, '/instances/%s/frames/0/image-uint16' % i) | |
284 DoGet(_REMOTE, '/instances/%s/frames/75/preview' % i) | |
285 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/aaa/preview' % i)) | |
286 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/76/preview' % i)) | |
287 | |
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288 |
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289 def test_changes(self): |
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290 # Check emptiness |
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291 c = DoGet(_REMOTE, '/changes') |
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292 self.assertEqual(0, len(c['Changes'])) |
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293 self.assertEqual(0, c['Last']) |
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294 self.assertTrue(c['Done']) |
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295 c = DoGet(_REMOTE, '/changes?last') |
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296 self.assertEqual(0, len(c['Changes'])) |
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297 self.assertEqual(0, c['Last']) |
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298 self.assertTrue(c['Done']) |
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299 |
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300 # Add 1 instance |
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301 i = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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302 c = DoGet(_REMOTE, '/changes') |
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303 begin = c['Last'] |
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304 self.assertEqual(4, len(c['Changes'])) |
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305 self.assertTrue(c['Done']) |
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306 self.assertEqual(c['Changes'][-1]['Seq'], c['Last']) |
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307 |
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308 c = DoGet(_REMOTE, '/changes?last') |
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309 self.assertEqual(1, len(c['Changes'])) |
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310 self.assertEqual(begin, c['Last']) |
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311 self.assertTrue(c['Done']) |
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312 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 1)) |
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313 self.assertEqual(1, len(c['Changes'])) |
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314 self.assertEqual(begin, c['Last']) |
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315 self.assertTrue(c['Done']) |
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316 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 2)) |
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317 self.assertEqual(1, len(c['Changes'])) |
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318 self.assertEqual(begin - 1, c['Last']) |
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319 self.assertFalse(c['Done']) |
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320 c = DoGet(_REMOTE, '/changes?limit=1&since=' + str(begin - 3)) |
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321 self.assertEqual(1, len(c['Changes'])) |
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322 self.assertEqual(begin - 2, c['Last']) |
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323 self.assertFalse(c['Done']) |
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324 |
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325 UploadFolder(_REMOTE, 'Knee/T1') |
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326 UploadFolder(_REMOTE, 'Knee/T2') |
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327 since = begin |
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328 countPatients = 0 |
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329 countStudies = 0 |
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330 countSeries = 0 |
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331 countInstances = 0 |
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332 completed = 0 |
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333 while True: |
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334 c = DoGet(_REMOTE, '/changes', { 'since' : since, 'limit' : 3 }) |
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335 since = c['Last'] |
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336 for i in c['Changes']: |
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337 if i['ResourceType'] == 'Instance': |
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338 countInstances += 1 |
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339 if i['ResourceType'] == 'Patient': |
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340 countPatients += 1 |
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341 if i['ResourceType'] == 'Study': |
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342 countStudies += 1 |
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343 if i['ResourceType'] == 'Series': |
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344 countSeries += 1 |
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345 if i['ChangeType'] == 'NewInstance': |
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346 countInstances += 1 |
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347 if i['ChangeType'] == 'NewPatient': |
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348 countPatients += 1 |
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349 if i['ChangeType'] == 'NewStudy': |
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350 countStudies += 1 |
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351 if i['ChangeType'] == 'NewSeries': |
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352 countSeries += 1 |
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353 if i['ChangeType'] == 'CompletedSeries': |
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354 completed += 1 |
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355 self.assertTrue('ID' in i) |
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356 self.assertTrue('Path' in i) |
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357 self.assertTrue('Seq' in i) |
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358 if c['Done']: |
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359 break |
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360 |
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361 self.assertEqual(2 * 50, countInstances) |
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362 self.assertEqual(2 * 1, countPatients) |
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363 self.assertEqual(2 * 1, countStudies) |
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364 self.assertEqual(2 * 2, countSeries) |
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365 self.assertEqual(0, completed) |
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366 |
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367 |
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368 def test_archive(self): |
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369 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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370 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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|
371 |
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372 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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373 self.assertEqual(2, len(z.namelist())) |
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|
374 |
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375 z = GetArchive(_REMOTE, '/studies/%s/archive' % DoGet(_REMOTE, '/studies')[0]) |
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376 self.assertEqual(2, len(z.namelist())) |
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|
377 |
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378 z = GetArchive(_REMOTE, '/series/%s/archive' % DoGet(_REMOTE, '/series')[0]) |
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379 self.assertEqual(1, len(z.namelist())) |
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|
380 |
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381 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') |
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|
382 |
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383 z = GetArchive(_REMOTE, '/patients/%s/archive' % DoGet(_REMOTE, '/patients')[0]) |
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384 self.assertEqual(2, len(z.namelist())) |
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changeset
|
385 |
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changeset
|
386 |
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|
387 def test_media_archive(self): |
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388 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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389 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') |
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changeset
|
390 |
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changeset
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391 z = GetArchive(_REMOTE, '/patients/%s/media' % DoGet(_REMOTE, '/patients')[0]) |
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392 self.assertEqual(3, len(z.namelist())) |
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393 self.assertTrue('IMAGES/IM0' in z.namelist()) |
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394 self.assertTrue('IMAGES/IM1' in z.namelist()) |
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395 self.assertTrue('DICOMDIR' in z.namelist()) |
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changeset
|
396 |
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changeset
|
397 try: |
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398 os.remove('/tmp/DICOMDIR') |
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changeset
|
399 except: |
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changeset
|
400 # The file does not exist |
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changeset
|
401 pass |
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changeset
|
402 |
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changeset
|
403 z.extract('DICOMDIR', '/tmp') |
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changeset
|
404 a = subprocess.check_output([ 'dciodvfy', '/tmp/DICOMDIR' ], |
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changeset
|
405 stderr = subprocess.STDOUT).split('\n') |
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changeset
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406 self.assertEqual(3, len(a)) |
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407 self.assertTrue(a[0].startswith('Warning')) |
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changeset
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408 self.assertEqual('BasicDirectory', a[1]) |
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changeset
|
409 self.assertEqual('', a[2]) |
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changeset
|
410 |
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changeset
|
411 a = subprocess.check_output([ 'dcentvfy', '/tmp/DICOMDIR' ], |
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changeset
|
412 stderr = subprocess.STDOUT).split('\n') |
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changeset
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413 self.assertEqual(1, len(a)) |
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changeset
|
414 self.assertEqual('', a[0]) |
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diff
changeset
|
415 |
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diff
changeset
|
416 a = subprocess.check_output([ 'dcm2xml', '/tmp/DICOMDIR' ]) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
417 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081908590448738', a) != None) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
418 self.assertTrue(re.search('1.3.46.670589.11.17521.5.0.3124.2008081909113806560', a) != None) |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
419 |
f8d781d1d267
test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
420 os.remove('/tmp/DICOMDIR') |
10 | 421 |
422 | |
423 def test_protection(self): | |
424 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
425 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
426 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
427 a = DoGet(_REMOTE, '/patients')[0] | |
428 b = DoGet(_REMOTE, '/patients')[1] | |
429 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
430 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
431 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
432 DoPut(_REMOTE, '/patients/%s/protected' % a, '1', 'text/plain') | |
433 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
434 DoPut(_REMOTE, '/patients/%s/protected' % a, '0', 'text/plain') | |
435 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
436 | |
437 | |
12 | 438 def test_raw_tags(self): |
10 | 439 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] |
440 | |
441 dicom = DoGet(_REMOTE, '/instances/%s/file' % i) | |
442 self.assertEqual('1a7c56cb02d6e742cc9c856a8ac182e3', ComputeMD5(dicom)) | |
443 | |
444 s = '/instances/%s/content/' % i | |
445 | |
446 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, s + '0008-1010').strip()) | |
447 self.assertRaises(Exception, lambda: DoGet(_REMOTE, s + '0008-1011')) | |
448 | |
449 self.assertEqual('Abdomen', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/0/7fe1-1057').strip()) | |
450 self.assertEqual('cla_3c', DoGet(_REMOTE, s + '7fe1-1001/0/7fe1-1008/8/7fe1-1057').strip()) | |
451 | |
452 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
453 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
454 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
455 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
456 | |
457 for i in DoGet(_REMOTE, '/instances'): | |
458 aid = DoGet(_REMOTE, '/instances/%s' % i)['MainDicomTags']['SOPInstanceUID'] | |
459 self.assertEqual(aid, DoGet(_REMOTE, '/instances/%s/content/0008-0018' % i).replace(chr(0), '')) | |
460 | |
461 | |
462 def test_raw_tags_mdn(self): | |
463 # Bug reported by Cyril Paulus | |
464 i = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
465 self.assertAlmostEqual(0.000027, DoGet(_REMOTE, '/instances/%s/content/7053-1000' % i)) | |
466 | |
467 | |
468 def test_modify_instance(self): | |
469 i = UploadInstance(_REMOTE, 'PrivateTags.dcm')['ID'] | |
470 modified = DoPost(_REMOTE, '/instances/%s/modify' % i, | |
471 json.dumps({ | |
472 "Replace" : { | |
473 "PatientName" : "hello", | |
474 #"PatientID" : "world" | |
475 }, | |
476 "Remove" : [ "StationName" ], | |
477 "RemovePrivateTags" : None | |
478 }), | |
479 'application/json') | |
480 j = DoPost(_REMOTE, '/instances', modified, 'application/dicom')['ID'] | |
481 | |
482 self.assertNotEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
483 #self.assertNotEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % i).strip()) | |
484 self.assertEqual('LOGIQBOOK', DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i).strip()) | |
485 DoGet(_REMOTE, '/instances/%s/content/6003-1010' % i) # Some private tag | |
486 | |
487 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
488 #self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/0010-0020' % j).strip()) | |
489 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j)) | |
490 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/6003-1010' % j)) | |
491 | |
492 | |
493 def test_modify_series(self): | |
494 # Upload 4 images from the same series | |
495 for i in range(4): | |
496 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
497 | |
498 origSeries = DoGet(_REMOTE, '/series')[0] | |
499 newSeries = DoPost(_REMOTE, '/series/%s/modify' % origSeries, | |
500 '{"Replace":{"PatientName":"Jodogne"}}', | |
501 'application/json')['ID'] | |
502 | |
503 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['ModifiedFrom']) | |
504 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
505 self.assertEqual(4, len(instances)) | |
506 for i in instances: | |
507 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
508 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
509 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
510 | |
511 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
512 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
513 | |
514 | |
515 def test_modify_study(self): | |
516 # Upload 4 images from the 2 series of the same study | |
517 for i in range(4): | |
518 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
519 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
520 | |
521 origStudy = DoGet(_REMOTE, '/studies')[0] | |
522 newStudy = DoPost(_REMOTE, '/studies/%s/modify' % origStudy, | |
523 '{"Replace":{"PatientName":"Jodogne"}}', | |
524 'application/json')['ID'] | |
525 | |
526 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['ModifiedFrom']) | |
527 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
528 self.assertEqual(2, len(series)) | |
529 for s in series: | |
530 ss = DoGet(_REMOTE, '/series/%s' % s)['ModifiedFrom'] | |
531 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
532 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
533 | |
534 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
535 for i in instances: | |
536 j = DoGet(_REMOTE, '/instances/%s' % i)['ModifiedFrom'] | |
537 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
538 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
539 | |
540 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
541 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
542 | |
543 | |
544 def test_anonymize_series(self): | |
545 # Upload 4 images from the same series | |
546 for i in range(4): | |
547 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
548 | |
549 origSeries = DoGet(_REMOTE, '/series')[0] | |
550 newSeries = DoPost(_REMOTE, '/series/%s/anonymize' % origSeries, | |
551 '{}', | |
552 'application/json')['ID'] | |
553 | |
554 self.assertEqual(origSeries, DoGet(_REMOTE, '/series/%s' % newSeries)['AnonymizedFrom']) | |
555 instances = DoGet(_REMOTE, '/series/%s' % newSeries)['Instances'] | |
556 self.assertEqual(4, len(instances)) | |
557 for i in instances: | |
558 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
559 self.assertEqual(newSeries, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
560 self.assertEqual(origSeries, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
561 | |
562 DoGet(_REMOTE, '/instances/%s/content/0008-1010' % j) | |
563 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/0008-1010' % i)) | |
564 | |
565 | |
566 def test_anonymize_study(self): | |
567 # Upload 4 images from the 2 series of the same study | |
568 for i in range(4): | |
569 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
570 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
571 | |
572 origStudy = DoGet(_REMOTE, '/studies')[0] | |
573 newStudy = DoPost(_REMOTE,'/studies/%s/anonymize' % origStudy, | |
574 '{"Replace":{"PatientName":"Jodogne"}}', | |
575 'application/json')['ID'] | |
576 | |
577 self.assertEqual(origStudy, DoGet(_REMOTE, '/studies/%s' % newStudy)['AnonymizedFrom']) | |
578 series = DoGet(_REMOTE, '/studies/%s' % newStudy)['Series'] | |
579 self.assertEqual(2, len(series)) | |
580 for s in series: | |
581 ss = DoGet(_REMOTE, '/series/%s' % s)['AnonymizedFrom'] | |
582 self.assertEqual(newStudy, DoGet(_REMOTE, '/series/%s' % s)['ParentStudy']) | |
583 self.assertEqual(origStudy, DoGet(_REMOTE, '/series/%s' % ss)['ParentStudy']) | |
584 | |
585 instances = DoGet(_REMOTE, '/series/%s' % s)['Instances'] | |
586 for i in instances: | |
587 j = DoGet(_REMOTE, '/instances/%s' % i)['AnonymizedFrom'] | |
588 self.assertEqual(s, DoGet(_REMOTE, '/instances/%s' % i)['ParentSeries']) | |
589 self.assertEqual(ss, DoGet(_REMOTE, '/instances/%s' % j)['ParentSeries']) | |
590 | |
591 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % i).strip()) | |
592 self.assertNotEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % j).strip()) | |
11 | 593 |
594 | |
595 | |
596 def test_storescu(self): | |
597 # Check emptiness | |
598 e = DoGet(_REMOTE, '/exports') | |
599 self.assertEqual(0, len(e['Exports'])) | |
600 self.assertEqual(0, e['Last']) | |
601 self.assertTrue(e['Done']) | |
602 e = DoGet(_REMOTE, '/exports?last') | |
603 self.assertEqual(0, len(e['Exports'])) | |
604 self.assertEqual(0, e['Last']) | |
605 self.assertTrue(e['Done']) | |
606 | |
607 # Add 1 instance | |
608 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
609 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
610 | |
611 # Export the instance | |
612 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') # instance | |
613 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
614 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
615 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
616 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
617 | |
618 e = DoGet(_REMOTE, '/exports') | |
619 self.assertEqual(1, len(e['Exports'])) | |
620 self.assertTrue(e['Done']) | |
621 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
622 e = DoGet(_REMOTE, '/exports?limit=1') | |
623 self.assertEqual(1, len(e['Exports'])) | |
624 self.assertTrue(e['Done']) | |
625 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
626 e = DoGet(_REMOTE, '/exports?last') | |
627 self.assertEqual(1, len(e['Exports'])) | |
628 self.assertTrue(e['Done']) | |
629 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
630 seqInstance = e['Last'] | |
631 | |
632 # Export the series | |
633 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', 'text/plain') | |
634 | |
635 e = DoGet(_REMOTE, '/exports') | |
636 self.assertEqual(2, len(e['Exports'])) | |
637 self.assertTrue(e['Done']) | |
638 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
639 seqSeries = e['Last'] | |
640 self.assertNotEqual(seqInstance, seqSeries) | |
641 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
642 self.assertEqual(1, len(e['Exports'])) | |
643 self.assertFalse(e['Done']) | |
644 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
645 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
646 self.assertEqual(1, len(e['Exports'])) | |
647 self.assertTrue(e['Done']) | |
648 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
649 e = DoGet(_REMOTE, '/exports?last') | |
650 self.assertEqual(1, len(e['Exports'])) | |
651 self.assertTrue(e['Done']) | |
652 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
653 | |
654 # Export the study | |
655 j = DoPost(_REMOTE, '/modalities/orthanctest/store', 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', 'text/plain') | |
656 seqStudy = DoGet(_REMOTE, '/exports')['Last'] | |
657 | |
658 # Export the patient | |
659 j = DoPost(_REMOTE, '/modalities/orthanctest/store', '6816cb19-844d5aee-85245eba-28e841e6-2414fae2', 'text/plain') | |
660 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
661 self.assertEqual(1, len(DoGet(_LOCAL, '/studies'))) | |
662 self.assertEqual(1, len(DoGet(_LOCAL, '/series'))) | |
663 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
664 | |
665 e = DoGet(_REMOTE, '/exports') | |
666 self.assertEqual(4, len(e['Exports'])) | |
667 self.assertTrue(e['Done']) | |
668 self.assertEqual(e['Exports'][-1]['Seq'], e['Last']) | |
669 seqPatient = e['Last'] | |
670 self.assertNotEqual(seqInstance, seqSeries) | |
671 self.assertNotEqual(seqSeries, seqStudy) | |
672 self.assertNotEqual(seqStudy, seqPatient) | |
673 self.assertTrue(seqInstance < seqSeries) | |
674 self.assertTrue(seqSeries < seqStudy) | |
675 self.assertTrue(seqStudy < seqPatient) | |
676 e = DoGet(_REMOTE, '/exports?limit=1&since=0') | |
677 self.assertEqual(1, len(e['Exports'])) | |
678 self.assertFalse(e['Done']) | |
679 self.assertEqual(e['Exports'][-1]['Seq'], seqInstance) | |
680 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqInstance)) | |
681 self.assertEqual(1, len(e['Exports'])) | |
682 self.assertFalse(e['Done']) | |
683 self.assertEqual(e['Exports'][-1]['Seq'], seqSeries) | |
684 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqSeries)) | |
685 self.assertEqual(1, len(e['Exports'])) | |
686 self.assertFalse(e['Done']) | |
687 self.assertEqual(e['Exports'][-1]['Seq'], seqStudy) | |
688 e = DoGet(_REMOTE, '/exports?limit=1&since=' + str(seqStudy)) | |
689 self.assertEqual(1, len(e['Exports'])) | |
690 self.assertTrue(e['Done']) | |
691 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
692 e = DoGet(_REMOTE, '/exports?last') | |
693 self.assertEqual(1, len(e['Exports'])) | |
694 self.assertTrue(e['Done']) | |
695 self.assertEqual(e['Exports'][-1]['Seq'], seqPatient) | |
696 | |
697 | |
698 # Check the content of the logged information | |
699 e = DoGet(_REMOTE, '/exports')['Exports'] | |
700 | |
701 if 'PatientID' in e[0]: | |
702 # Since Orthanc 0.8.6 | |
703 patient = 'PatientID' | |
704 study = 'StudyInstanceUID' | |
705 series = 'SeriesInstanceUID' | |
706 instance = 'SOPInstanceUID' | |
707 else: | |
708 # Up to Orthanc 0.8.5 | |
709 patient = 'PatientId' | |
710 study = 'StudyInstanceUid' | |
711 series = 'SeriesInstanceUid' | |
712 instance = 'SopInstanceUid' | |
713 | |
714 for k in range(4): | |
715 self.assertTrue('Date' in e[k]) | |
716 self.assertTrue('Seq' in e[k]) | |
717 self.assertEqual('orthanctest', e[k]['RemoteModality']) | |
718 | |
719 self.assertEqual(10, len(e[0])) | |
720 self.assertEqual('Instance', e[0]['ResourceType']) | |
721 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['ID']) | |
722 self.assertEqual('/instances/66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', e[0]['Path']) | |
723 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', e[0][instance]) | |
724 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[0][series]) | |
725 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[0][study]) | |
726 self.assertEqual('ozp00SjY2xG', e[0][patient]) | |
727 | |
728 self.assertEqual(9, len(e[1])) | |
729 self.assertEqual('Series', e[1]['ResourceType']) | |
730 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['ID']) | |
731 self.assertEqual('/series/f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', e[1]['Path']) | |
732 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', e[1][series]) | |
733 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[1][study]) | |
734 self.assertEqual('ozp00SjY2xG', e[1][patient]) | |
735 | |
736 self.assertEqual(8, len(e[2])) | |
737 self.assertEqual('Study', e[2]['ResourceType']) | |
738 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['ID']) | |
739 self.assertEqual('/studies/b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', e[2]['Path']) | |
740 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', e[2][study]) | |
741 self.assertEqual('ozp00SjY2xG', e[2][patient]) | |
742 | |
743 self.assertEqual(7, len(e[3])) | |
744 self.assertEqual('Patient', e[3]['ResourceType']) | |
745 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['ID']) | |
746 self.assertEqual('/patients/6816cb19-844d5aee-85245eba-28e841e6-2414fae2', e[3]['Path']) | |
747 self.assertEqual('ozp00SjY2xG', e[3][patient]) | |
748 | |
749 DropOrthanc(_REMOTE) | |
750 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
751 | |
752 | |
753 def test_store_peer(self): | |
754 self.assertEqual(0, len(DoGet(_LOCAL, '/exports')['Exports'])) | |
755 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
756 | |
757 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
758 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
759 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
760 | |
761 j = DoPost(_REMOTE, '/peers/peer/store', str(i), 'text/plain') | |
762 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
763 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
764 | |
765 self.assertEqual(1, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
766 | |
767 DropOrthanc(_REMOTE) | |
768 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) | |
769 | |
770 | |
771 def test_bulk_storescu(self): | |
772 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
773 | |
774 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
775 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
776 | |
777 j = DoPost(_REMOTE, '/modalities/orthanctest/store', [ a['ID'], b['ID'] ], 'application/json') | |
778 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
779 | |
780 DropOrthanc(_LOCAL) | |
781 | |
782 # Send using patient's UUID | |
783 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
784 j = DoPost(_REMOTE, '/modalities/orthanctest/store', | |
785 [ 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17' ], 'application/json') | |
786 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
787 | |
788 | |
789 def test_color(self): | |
790 i = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] | |
791 im = GetImage(_REMOTE, '/instances/%s/preview' % i) | |
792 self.assertEqual("RGB", im.mode) | |
793 self.assertEqual(41, im.size[0]) | |
794 self.assertEqual(41, im.size[1]) | |
795 | |
796 # http://effbot.org/zone/pil-comparing-images.htm | |
13 | 797 truth = Image.open(GetDatabasePath('ColorTestMalaterre.png')) |
11 | 798 self.assertTrue(ImageChops.difference(im, truth).getbbox() is None) |
799 | |
800 | |
12 | 801 def test_faking_ruby_put(self): |
802 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
803 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
804 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
805 a = DoGet(_REMOTE, '/patients')[0] | |
806 b = DoGet(_REMOTE, '/patients')[1] | |
807 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
808 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
809 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
810 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '1') | |
811 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
812 DoGet(_REMOTE, '/patients/%s/protected' % a, data = { '_method' : 'PUT' }, body = '0') | |
813 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
814 | |
815 | |
816 def test_faking_ruby_delete(self): | |
817 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
818 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
819 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
820 a = DoGet(_REMOTE, '/patients')[0] | |
821 b = DoGet(_REMOTE, '/patients')[1] | |
822 DoGet(_REMOTE, '/patients/%s' % a, data = { '_method' : 'DELETE' }) | |
823 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
824 DoGet(_REMOTE, '/patients/%s' % b, data = { '_method' : 'DELETE' }) | |
825 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
826 | |
827 | |
828 def test_faking_google_put(self): | |
829 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
830 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
831 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
832 a = DoGet(_REMOTE, '/patients')[0] | |
833 b = DoGet(_REMOTE, '/patients')[1] | |
834 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
835 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
836 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
837 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '1') | |
838 self.assertEqual(1, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
839 DoPost(_REMOTE, '/patients/%s/protected' % a, headers = { 'X-HTTP-Method-Override' : 'PUT' }, data = '0') | |
840 self.assertEqual(0, DoGet(_REMOTE, '/patients/%s/protected' % a)) | |
841 | |
842 | |
843 def test_faking_google_delete(self): | |
844 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
845 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
846 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
847 a = DoGet(_REMOTE, '/patients')[0] | |
848 b = DoGet(_REMOTE, '/patients')[1] | |
849 DoPost(_REMOTE, '/patients/%s' % a, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
850 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
851 DoPost(_REMOTE, '/patients/%s' % b, headers = { 'X-HTTP-Method-Override' : 'DELETE' }) | |
852 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
853 | |
854 | |
855 def test_lua(self): | |
856 self.assertEqual(42, DoPost(_REMOTE, '/tools/execute-script', 'print(42)')) | |
857 self.assertTrue(IsDefinedInLua(_REMOTE, 'PrintRecursive')) | |
858 self.assertFalse(IsDefinedInLua(_REMOTE, 'HelloWorld')) | |
859 | |
860 | |
861 def test_metadata(self): | |
862 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
863 p = DoGet(_REMOTE, '/patients')[0] | |
864 i = DoGet(_REMOTE, '/instances')[0] | |
865 | |
866 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
867 self.assertEqual(1, len(m)) | |
868 self.assertEqual('LastUpdate', m[0]) | |
869 | |
870 m = DoGet(_REMOTE, '/instances/%s/metadata' % i) | |
871 self.assertEqual(3, len(m)) | |
872 self.assertTrue('IndexInSeries' in m) | |
873 self.assertTrue('ReceptionDate' in m) | |
874 self.assertTrue('RemoteAET' in m) | |
875 | |
876 # Play with custom metadata | |
877 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'coucou') | |
878 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
879 self.assertEqual(2, len(m)) | |
880 self.assertTrue('LastUpdate' in m) | |
881 self.assertTrue('5555' in m) | |
882 self.assertEqual('coucou', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
883 DoPut(_REMOTE, '/patients/%s/metadata/5555' % p, 'hello') | |
884 self.assertEqual('hello', DoGet(_REMOTE, '/patients/%s/metadata/5555' % p)) | |
885 DoDelete(_REMOTE, '/patients/%s/metadata/5555' % p) | |
886 m = DoGet(_REMOTE, '/patients/%s/metadata' % p) | |
887 self.assertEqual(1, len(m)) | |
888 self.assertTrue('LastUpdate' in m) | |
13 | 889 |
890 | |
891 def test_statistics(self): | |
892 # Upload 16 instances | |
893 for i in range(4): | |
894 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
895 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
896 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
897 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
898 | |
899 s = DoGet(_REMOTE, '/statistics') | |
900 self.assertEqual(16, s['CountInstances']) | |
901 self.assertEqual(2, s['CountPatients']) | |
902 self.assertEqual(2, s['CountStudies']) | |
903 self.assertEqual(4, s['CountSeries']) | |
904 d = int(s['TotalUncompressedSize']) | |
905 | |
906 e = 0 | |
907 for patient in DoGet(_REMOTE, '/patients'): | |
908 s = DoGet(_REMOTE, '/patients/%s/statistics' % patient) | |
909 self.assertEqual(8, s['CountInstances']) | |
910 self.assertEqual(1, s['CountStudies']) | |
911 self.assertEqual(2, s['CountSeries']) | |
912 e += int(s['UncompressedSize']) | |
913 | |
914 for study in DoGet(_REMOTE, '/studies'): | |
915 s = DoGet(_REMOTE, '/studies/%s/statistics' % study) | |
916 self.assertEqual(8, s['CountInstances']) | |
917 self.assertEqual(2, s['CountSeries']) | |
918 e += int(s['UncompressedSize']) | |
919 | |
920 for series in DoGet(_REMOTE, '/series'): | |
921 s = DoGet(_REMOTE, '/series/%s/statistics' % series) | |
922 self.assertEqual(4, s['CountInstances']) | |
923 e += int(s['UncompressedSize']) | |
924 | |
925 self.assertEqual(3 * d, e) | |
926 | |
927 | |
928 def test_custom_attachment(self): | |
929 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm') | |
930 patient = DoGet(_REMOTE, '/patients')[0] | |
931 instance = DoGet(_REMOTE, '/instances')[0] | |
932 size = int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']) | |
933 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
934 | |
935 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
936 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/attachments' % instance))) | |
937 self.assertTrue('dicom' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
938 self.assertTrue('dicom-as-json' in DoGet(_REMOTE, '/instances/%s/attachments' % instance)) | |
939 | |
940 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/patients/%s/attachments/22' % patient, 'hello')) | |
941 hello = 'hellohellohellohellohellohellohellohellohello' | |
942 DoPut(_REMOTE, '/patients/%s/attachments/1025' % patient, hello) | |
943 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
944 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
945 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
946 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient))) | |
947 | |
948 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world') | |
949 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
950 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
951 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
952 size + | |
953 int(DoGet(_REMOTE, '/patients/%s/attachments/1025/compressed-size' % patient)) + | |
954 int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
955 | |
956 self.assertEqual(2, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
957 self.assertEqual(hello, DoGet(_REMOTE, '/patients/%s/attachments/1025/data' % patient)) | |
958 self.assertEqual('world', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
959 DoPost(_REMOTE, '/patients/%s/attachments/1025/verify-md5' % patient) | |
960 DoPost(_REMOTE, '/patients/%s/attachments/1026/verify-md5' % patient) | |
961 DoPut(_REMOTE, '/patients/%s/attachments/1026' % patient, 'world2') | |
962 self.assertEqual('world2', DoGet(_REMOTE, '/patients/%s/attachments/1026/data' % patient)) | |
963 | |
964 self.assertRaises(Exception, lambda: DoDelete(_REMOTE, '/instances/%s/attachments/dicom' % instance)) | |
965 DoDelete(_REMOTE, '/patients/%s/attachments/1025' % patient) | |
966 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
967 int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
968 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), | |
969 size + int(DoGet(_REMOTE, '/patients/%s/attachments/1026/compressed-size' % patient))) | |
970 | |
971 self.assertEqual(1, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
972 DoDelete(_REMOTE, '/patients/%s/attachments/1026' % patient) | |
973 self.assertEqual(0, len(DoGet(_REMOTE, '/patients/%s/attachments' % patient))) | |
974 | |
975 self.assertEqual(int(DoGet(_REMOTE, '/patients/%s/statistics' % patient)['DiskSize']), size) | |
976 self.assertEqual(size, int(DoGet(_REMOTE, '/statistics')['TotalDiskSize'])) | |
977 | |
978 | |
979 def test_incoming_storescu(self): | |
980 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
981 subprocess.check_call([ 'storescu', _REMOTE['Server'], str(_REMOTE['DicomPort']), | |
982 GetDatabasePath('ColorTestImageJ.dcm') ]) | |
983 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
984 | |
985 | |
986 def test_incoming_findscu(self): | |
987 def CallFindScu(args): | |
988 p = subprocess.Popen([ 'findscu', '-P', '-aec', _REMOTE['DicomAet'], '-aet', _LOCAL['DicomAet'], | |
989 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, | |
990 stderr=subprocess.PIPE) | |
991 return p.communicate()[1] | |
992 | |
993 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
994 UploadInstance(_REMOTE, 'ColorTestImageJ.dcm') | |
995 | |
996 i = CallFindScu([ '-k', '0008,0052=PATIENT', '-k', '0010,0010' ]) | |
997 patientNames = re.findall('\(0010,0010\).*?\[(.*?)\]', i) | |
998 self.assertEqual(2, len(patientNames)) | |
999 self.assertTrue('Test Patient BG ' in patientNames) | |
1000 self.assertTrue('Anonymized' in patientNames) | |
1001 | |
1002 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', '0008,0021' ]) | |
1003 series = re.findall('\(0008,0021\).*?\[\s*(.*?)\s*\]', i) | |
1004 self.assertEqual(2, len(series)) | |
1005 self.assertTrue('20070208' in series) | |
1006 self.assertTrue('19980312' in series) | |
1007 | |
1008 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=Anonymized' ]) | |
1009 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1010 self.assertEqual(1, len(series)) | |
1011 | |
1012 # Test the "CaseSentitivePN" flag (false by default) | |
1013 i = CallFindScu([ '-k', '0008,0052=SERIES', '-k', 'PatientName=anonymized' ]) | |
1014 series = re.findall('\(0010,0010\).*?\[\s*(.*?)\s*\]', i) | |
1015 self.assertEqual(1, len(series)) | |
1016 | |
1017 | |
1018 def test_incoming_movescu(self): | |
1019 def CallMoveScu(args): | |
1020 subprocess.check_call([ 'movescu', | |
17 | 1021 '--move', _LOCAL['DicomAet'], # Target AET (i.e. storescp) |
1022 '--call', _REMOTE['DicomAet'], # Called AET (i.e. Orthanc) | |
1023 '--aetitle', _LOCAL['DicomAet'], # Calling AET (i.e. storescp) | |
13 | 1024 _REMOTE['Server'], str(_REMOTE['DicomPort']) ] + args, |
1025 stderr=subprocess.PIPE) | |
1026 | |
1027 UploadInstance(_REMOTE, 'Multiframe.dcm') | |
1028 | |
1029 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
17 | 1030 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=none' ]) |
13 | 1031 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
1032 CallMoveScu([ '--patient', '-k', '0008,0052=PATIENT', '-k', 'PatientID=12345678' ]) | |
1033 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1034 | |
1035 | |
1036 def test_findscu(self): | |
1037 i = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1038 j = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1039 k = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] | |
1040 DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1041 | |
1042 # Test the "find-patient" level | |
1043 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1044 self.assertEqual(1, len(p)) | |
1045 self.assertEqual('ozp00SjY2xG', p[0]['PatientID']) | |
1046 | |
1047 # Test wildcards constraints. The "LO" value representation | |
1048 # for PatientID is always case-sensitive, but the "PN" for | |
1049 # PatientName might depend on the implementation: | |
1050 # "GenerateConfigurationForTests.py" will force it to be case | |
1051 # insensitive (which was the default until Orthanc 0.8.6). | |
1052 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'K*' }) | |
1053 self.assertEqual(1, len(p)) | |
1054 | |
1055 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'k*' }) | |
1056 self.assertEqual(1, len(p)) | |
1057 | |
1058 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'ozp*' }) | |
1059 self.assertEqual(1, len(p)) | |
1060 | |
1061 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : 'o?p*' }) | |
1062 self.assertEqual(1, len(p)) | |
1063 | |
1064 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientID' : '0?q*' }) | |
1065 self.assertEqual(0, len(p)) | |
1066 | |
1067 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'B*' }) | |
1068 self.assertEqual(0, len(p)) | |
1069 | |
1070 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'b*' }) | |
1071 self.assertEqual(0, len(p)) | |
1072 | |
1073 DoPost(_REMOTE, '/modalities/orthanctest/store', str(j), 'text/plain') | |
1074 DoPost(_REMOTE, '/modalities/orthanctest/store', str(k), 'text/plain') | |
1075 DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }) | |
1076 self.assertEqual(3, len(DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { }))) | |
1077 | |
1078 p = DoPost(_REMOTE, '/modalities/orthanctest/find-patient', { 'PatientName' : 'A*' }) | |
1079 self.assertEqual(2, len(p)) | |
1080 | |
1081 # Test the "find-study" level. This is the instance "ColorTestImageJ.dcm" | |
1082 s = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ' }) | |
1083 self.assertEqual(1, len(s)) | |
1084 self.assertEqual('20070208', s[0]['StudyDate']) | |
1085 | |
1086 # Test range searches | |
1087 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1088 'StudyDate' : '-20070101' }) | |
1089 self.assertEqual(0, len(t)) | |
1090 | |
1091 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1092 'StudyDate' : '20090101-' }) | |
1093 self.assertEqual(0, len(t)) | |
1094 | |
1095 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1096 'StudyDate' : '20070101-' }) | |
1097 self.assertEqual(1, len(t)) | |
1098 | |
1099 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1100 'StudyDate' : '-20090101' }) | |
1101 self.assertEqual(1, len(t)) | |
1102 | |
1103 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1104 'StudyDate' : '20070207-20070207' }) | |
1105 self.assertEqual(0, len(t)) | |
1106 | |
1107 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1108 'StudyDate' : '20070208-20070208' }) | |
1109 self.assertEqual(1, len(t)) | |
1110 | |
1111 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { 'PatientID' : 'B9uTHKOZ', | |
1112 'StudyDate' : '20070209-20070209' }) | |
1113 self.assertEqual(0, len(t)) | |
1114 | |
1115 # Test the ModalitiesInStudy tag | |
1116 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1117 'PatientID' : 'B9uTHKOZ', | |
1118 'ModalitiesInStudy' : 'US' }) | |
1119 self.assertEqual(0, len(t)) | |
1120 | |
1121 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1122 'PatientID' : 'B9uTHKOZ', | |
1123 'ModalitiesInStudy' : 'CT' }) | |
1124 self.assertEqual(1, len(t)) | |
1125 | |
1126 t = DoPost(_REMOTE, '/modalities/orthanctest/find-study', { | |
1127 'PatientID' : 'B9uTHKOZ', | |
1128 'ModalitiesInStudy' : 'US\\CT' }) | |
1129 self.assertEqual(1, len(t)) | |
1130 | |
1131 # Test the "find-series" level | |
1132 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1133 'PatientID' : 'B9uTHKOZ', | |
1134 'StudyInstanceUID' : s[0]['StudyInstanceUID'] }) | |
1135 self.assertEqual(1, len(t)) | |
1136 | |
1137 # Test "\" separator | |
1138 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1139 'PatientID' : 'B9uTHKOZ', | |
1140 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1141 'Modality' : 'MR\\CT\\US' }) | |
1142 self.assertEqual(1, len(t)) | |
1143 | |
1144 t = DoPost(_REMOTE, '/modalities/orthanctest/find-series', { | |
1145 'PatientID' : 'B9uTHKOZ', | |
1146 'StudyInstanceUID' : s[0]['StudyInstanceUID'], | |
1147 'Modality' : 'MR\\US' }) | |
1148 self.assertEqual(0, len(t)) | |
1149 | |
1150 | |
1151 def test_update_modalities(self): | |
1152 try: | |
1153 DoDelete(_REMOTE, '/modalities/toto') | |
1154 except: | |
1155 pass | |
1156 try: | |
1157 DoDelete(_REMOTE, '/modalities/tata') | |
1158 except: | |
1159 pass | |
1160 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1161 DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000 ]) | |
1162 DoPut(_REMOTE, '/modalities/tata', [ "STORESCP", "localhost", 2000, 'MedInria' ]) | |
1163 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/modalities/toto', [ "STORESCP", "localhost", 2000, 'MedInriaaa' ])) | |
1164 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/toto')) | |
1165 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/tata')) | |
1166 DoDelete(_REMOTE, '/modalities/toto') | |
1167 DoDelete(_REMOTE, '/modalities/tata') | |
1168 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/toto')) | |
1169 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/modalities/tata')) | |
1170 | |
1171 | |
1172 def test_update_peers(self): | |
1173 # curl -X PUT http://localhost:8042/peers/toto -d '["http://localhost:8042/"]' -v | |
1174 try: | |
1175 DoDelete(_REMOTE, '/peers/toto') | |
1176 except: | |
1177 pass | |
1178 try: | |
1179 DoDelete(_REMOTE, '/peers/tata') | |
1180 except: | |
1181 pass | |
1182 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1183 DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/' ]) | |
1184 DoPut(_REMOTE, '/peers/tata', [ 'http://localhost:8042/', 'user', 'pass' ]) | |
1185 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a' ])) | |
1186 self.assertRaises(Exception, lambda: DoPut(_REMOTE, '/peers/toto', [ 'http://localhost:8042/', 'a', 'b', 'c' ])) | |
1187 self.assertTrue('store' in DoGet(_REMOTE, '/peers/toto')) | |
1188 self.assertTrue('store' in DoGet(_REMOTE, '/peers/tata')) | |
1189 DoDelete(_REMOTE, '/peers/toto') | |
1190 DoDelete(_REMOTE, '/peers/tata') | |
1191 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/toto')) | |
1192 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/peers/tata')) | |
1193 | |
1194 | |
1195 def test_mesterhazy_modification(self): | |
1196 # When I modify a series ( eg. curl | |
1197 # http://localhost:8042/series/uidhere/modify -X POST -d | |
1198 # '{"Replace":{"SeriesDate":"19990101"}}' ) the modified | |
1199 # series is added to a new Study, instead of the existing | |
1200 # Study. Fixed in Orthanc 0.7.5 | |
1201 | |
1202 u = UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1203 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1204 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1205 | |
1206 modified = DoPost(_REMOTE, '/series/%s/modify' % series, | |
1207 json.dumps({ "Replace" : { "SeriesDate" : "19990101" }})) | |
1208 | |
1209 self.assertEqual(study, DoGet(_REMOTE, '/series/%s' % modified['ID']) ['ParentStudy']) | |
1210 | |
1211 | |
1212 def test_create(self): | |
1213 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1214 json.dumps({ | |
1215 'PatientName' : 'Jodogne', | |
1216 'Modality' : 'CT', | |
1217 'PixelData' : 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==' # red dot in RGBA | |
1218 })) | |
1219 | |
1220 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
1221 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
1222 | |
1223 png = GetImage(_REMOTE, '/instances/%s/preview' % i['ID']) | |
1224 self.assertEqual((5, 5), png.size) | |
1225 | |
38 | 1226 j = DoGet(_REMOTE, i['Path']) |
1227 self.assertEqual('Instance', j['Type']) | |
1228 self.assertEqual(j['ID'], i['ID']) | |
1229 | |
13 | 1230 |
1231 def test_pilates(self): | |
1232 # "SCU failed error when accessing orthanc with osirix" by | |
1233 # Pilates Agentur (Mar 10, 2014 at 9:33 PM) | |
1234 i = UploadInstance(_REMOTE, 'PilatesArgenturGEUltrasoundOsiriX.dcm')['ID'] | |
1235 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) | |
1236 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1237 self.assertEqual(1, len(DoGet(_LOCAL, '/patients'))) | |
1238 | |
1239 | |
1240 def test_shared_tags(self): | |
1241 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1242 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm')['ID'] | |
1243 p = DoGet(_REMOTE, '/patients')[0] | |
1244 | |
1245 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1246 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1247 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1248 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1249 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1250 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1251 self.assertFalse('0008,0018' in DoGet(_REMOTE, '/patients/%s/shared-tags' % p)) | |
1252 self.assertFalse('SOPInstanceUID' in DoGet(_REMOTE, '/patients/%s/shared-tags?simplify' % p)) | |
1253 | |
1254 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/tags' % a)) | |
1255 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/tags?simplify' % a)) | |
1256 | |
1257 | |
1258 def test_modules(self): | |
1259 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1260 p = DoGet(_REMOTE, '/patients')[0] | |
1261 s = DoGet(_REMOTE, '/studies')[0] | |
1262 t = DoGet(_REMOTE, '/series')[0] | |
1263 | |
1264 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/patients/%s/module' % p)) | |
1265 self.assertTrue('PatientName' in DoGet(_REMOTE, '/patients/%s/module?simplify' % p)) | |
1266 self.assertTrue('0010,0010' in DoGet(_REMOTE, '/studies/%s/module-patient' % p)) | |
1267 self.assertTrue('PatientName' in DoGet(_REMOTE, '/studies/%s/module-patient?simplify' % p)) | |
1268 self.assertTrue('0008,1030' in DoGet(_REMOTE, '/studies/%s/module' % s)) | |
1269 self.assertTrue('StudyDescription' in DoGet(_REMOTE, '/studies/%s/module?simplify' % s)) | |
1270 self.assertTrue('0008,103e' in DoGet(_REMOTE, '/series/%s/module' % p)) | |
1271 self.assertTrue('SeriesDescription' in DoGet(_REMOTE, '/series/%s/module?simplify' % p)) | |
1272 self.assertTrue('0008,0018' in DoGet(_REMOTE, '/instances/%s/module' % a)) | |
1273 self.assertTrue('SOPInstanceUID' in DoGet(_REMOTE, '/instances/%s/module?simplify' % a)) | |
1274 | |
1275 | |
1276 def test_auto_directory(self): | |
1277 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1278 self.assertTrue('now' in DoGet(_REMOTE, '/tools')) | |
1279 self.assertTrue('dicom-conformance' in DoGet(_REMOTE, '/tools')) | |
1280 self.assertTrue(len(DoGet(_REMOTE, '/tools/dicom-conformance')) > 1000) | |
1281 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1282 self.assertTrue('echo' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1283 self.assertTrue('find' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1284 self.assertTrue('find-instance' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1285 self.assertTrue('find-patient' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1286 self.assertTrue('find-series' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1287 self.assertTrue('find-study' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1288 self.assertTrue('store' in DoGet(_REMOTE, '/modalities/orthanctest')) | |
1289 self.assertTrue('store' in DoGet(_REMOTE, '/peers/peer')) | |
1290 self.assertTrue('matlab' in DoGet(_REMOTE, '/instances/%s/frames/0' % a)) | |
1291 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/tools/nope')) | |
28 | 1292 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope')) |
1293 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/nope/nope.html')) | |
1294 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope')[0].status) | |
1295 self.assertEqual(404, DoGetRaw(_REMOTE, '/nope/nope.html')[0].status) | |
13 | 1296 |
1297 | |
1298 def test_echo(self): | |
1299 DoPost(_REMOTE, '/modalities/orthanctest/echo') | |
1300 | |
1301 | |
1302 def test_xml(self): | |
1303 json = DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/json' }) | |
1304 xml = minidom.parseString(DoGet(_REMOTE, '/tools', headers = { 'accept' : 'application/xml' })) | |
1305 items = xml.getElementsByTagName('root')[0].getElementsByTagName('item') | |
1306 self.assertEqual(len(items), len(json)) | |
1307 | |
1308 self.assertTrue('dicom-conformance' in json) | |
1309 | |
1310 ok = False | |
1311 for i in items: | |
1312 if i.childNodes[0].data == 'dicom-conformance': | |
1313 ok = True | |
1314 self.assertTrue(ok) | |
1315 | |
1316 | |
1317 def test_issue_16(self): | |
1318 i = UploadInstance(_REMOTE, 'Issue16.dcm')['ID'] | |
1319 t = DoGet(_REMOTE, '/instances/%s/tags?simplify' % i)['FrameIncrementPointer'] | |
1320 self.assertEqual('0018,1063', t) | |
1321 | |
1322 | |
1323 def test_issue_22(self): | |
1324 s = UploadInstance(_REMOTE, 'Issue22.dcm')['ID'] | |
1325 a = [ | |
1326 "f804691f62197040438f4627c6b994f1", # Frame 0 | |
1327 "c69eee9a51eea3e8611e82e578897254", | |
1328 "315666be83e2d0111c77bc0996d84901", | |
1329 "3e27aa959d911172c48a1436443c72b1", | |
1330 "958642c9e7e9d232d3869faff546058c", | |
1331 "5e7ea8e3e4230cae707d143481355c59", | |
1332 "eda37f83558d858a596175aed8b2ad47", | |
1333 "486713bd2895c4ecbe0e97715ac7f80a", | |
1334 "091ef729eb169e67da8a0faa9631f9a8", | |
1335 "5aa2b8c7ffe0a483efaa8e12417686ca", | |
1336 "e2f39e85896fe58876654b94cd0b5013", | |
1337 "6fd2129e4950abbe1be053bc814d5da8", | |
1338 "c3331a8ba7a757f3d423735ab7fa81f9", | |
1339 "746f808582156734dd6b6fdfd3a0b72c", | |
1340 "8075ea2b227a70c60ea6b7b75a6bb190", | |
1341 "806b8b3e300c615099c11a5ec23465aa", | |
1342 "7c836aa298ba6eef96434579af631a11", | |
1343 "a0357dc9f4f72d73a885c33d7c287446", | |
1344 "f25ba3be1cc7d7fad95706adc199ea7d", | |
1345 "8b114c526b8cbed6cad8a3248b7b480c", | |
1346 "44e6670f127e612a2b4aa60a0d207698", | |
1347 "b8945f90fe02facf2ace24ca1ecbe0a5", | |
1348 "95c796c2fa8f59018b15cf2987b1f79b", | |
1349 "ce0a51ab30224205b44920221dc27351", # Frame 23 | |
1350 ] | |
1351 | |
1352 self.assertEqual(24, len(DoGet(_REMOTE, '/instances/%s/frames' % s))) | |
1353 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/frames/24/preview' % s)) | |
1354 | |
1355 for i in range(len(a)): | |
1356 self.assertEqual(a[i], ComputeMD5(DoGet(_REMOTE, '/instances/%s/frames/%d/preview' % (s, i)))) | |
1357 | |
1358 | |
1359 def test_issue_19(self): | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1360 # This is an image with "YBR_FULL" photometric interpretation, it is not supported by Orthanc |
13 | 1361 # gdcmconv -i /home/jodogne/DICOM/GdcmDatabase/US_DataSet/HDI5000_US/3EAF5E01 -w -o Issue19.dcm |
1362 | |
1363 a = UploadInstance(_REMOTE, 'Issue19.dcm')['ID'] | |
21
2a29bcff60a7
tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
18
diff
changeset
|
1364 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/941ad3c8-05d05b88-560459f9-0eae0e20-6cddd533/preview')) |
13 | 1365 |
1366 | |
1367 def test_issue_37(self): | |
1368 # Same test for issues 35 and 37. Fixed in Orthanc 0.9.1 | |
1369 u = UploadInstance(_REMOTE, 'Beaufix/IM-0001-0001.dcm')['ID'] | |
1370 | |
1371 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1372 'CaseSensitive' : True, | |
1373 'Query' : { 'StationName' : 'SMR4-MP3' }}) | |
1374 self.assertEqual(1, len(a)) | |
14 | 1375 |
1376 | |
1377 def test_rest_find(self): | |
1378 # Upload 8 instances | |
1379 for i in range(2): | |
1380 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1381 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1382 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1383 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1384 | |
1385 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1386 'CaseSensitive' : False, | |
1387 'Query' : { 'PatientName' : '*n*' }}) | |
1388 self.assertEqual(2, len(a)) | |
1389 | |
1390 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1391 'CaseSensitive' : True, | |
1392 'Query' : { 'PatientName' : '*n*' }}) | |
1393 self.assertEqual(0, len(a)) | |
1394 | |
1395 a = DoPost(_REMOTE, '/tools/find', { 'Expand' : True, | |
1396 'Level' : 'Patient', | |
1397 'CaseSensitive' : False, | |
1398 'Query' : { 'PatientName' : '*ne*' }}) | |
1399 self.assertEqual(1, len(a)) | |
1400 self.assertEqual('20080822', a[0]['MainDicomTags']['PatientBirthDate']) | |
1401 | |
1402 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', | |
1403 'CaseSensitive' : True, | |
1404 'Query' : { 'PatientName' : '*ne*' }}) | |
1405 self.assertEqual(0, len(a)) | |
1406 | |
1407 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', | |
1408 'CaseSensitive' : True, | |
1409 'Query' : { 'PatientName' : '*NE*' }}) | |
1410 self.assertEqual(1, len(a)) | |
1411 | |
1412 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', | |
1413 'CaseSensitive' : True, | |
1414 'Query' : { 'PatientName' : '*NE*' }}) | |
1415 self.assertEqual(2, len(a)) | |
1416 | |
1417 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', | |
1418 'CaseSensitive' : True, | |
1419 'Query' : { 'PatientName' : '*NE*' }}) | |
1420 self.assertEqual(4, len(a)) | |
1421 | |
1422 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Patient', 'Query' : { }}) | |
1423 self.assertEqual(2, len(a)) | |
1424 | |
1425 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Study', 'Query' : { }}) | |
1426 self.assertEqual(2, len(a)) | |
1427 | |
1428 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Series', 'Query' : { }}) | |
1429 self.assertEqual(4, len(a)) | |
1430 | |
1431 a = DoPost(_REMOTE, '/tools/find', { 'Level' : 'Instance', 'Query' : { }}) | |
1432 self.assertEqual(8, len(a)) | |
1433 | |
1434 | |
1435 def test_rest_query_retrieve(self): | |
1436 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1437 | |
1438 # Upload 8 instances | |
1439 for i in range(2): | |
1440 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) | |
1441 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) | |
1442 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) | |
1443 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) | |
1444 | |
1445 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) | |
1446 for p in DoGet(_REMOTE, '/patients'): | |
1447 DoPost(_REMOTE, '/modalities/orthanctest/store', p) | |
1448 DoDelete(_REMOTE, '/patients/%s' % p) | |
1449 | |
1450 for q in DoGet(_REMOTE, '/queries'): | |
1451 DoDelete(_REMOTE, '/queries/%s' % q) | |
1452 | |
1453 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1454 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1455 a = DoPost(_REMOTE, '/modalities/orthanctest/query', { 'Level' : 'Series', | |
27 | 1456 'Query' : { |
1457 'PatientName' : '*NE*', | |
1458 'StudyDate' : '*', | |
1459 }})['ID'] | |
14 | 1460 self.assertEqual(1, len(DoGet(_REMOTE, '/queries'))) |
1461 | |
1462 b = DoGet(_REMOTE, '/queries/%s' % a) | |
1463 self.assertTrue('answers' in b) | |
1464 self.assertTrue('level' in b) | |
1465 self.assertTrue('modality' in b) | |
1466 self.assertTrue('query' in b) | |
1467 self.assertTrue('retrieve' in b) | |
1468 self.assertEqual('Series', DoGet(_REMOTE, '/queries/%s/level' % a)) | |
1469 self.assertEqual('orthanctest', DoGet(_REMOTE, '/queries/%s/modality' % a)) | |
1470 | |
1471 q = DoGet(_REMOTE, '/queries/%s/query?simplify' % a) | |
27 | 1472 self.assertEqual(2, len(q)) |
14 | 1473 self.assertTrue('PatientName' in q) |
27 | 1474 self.assertTrue('StudyDate' in q) |
14 | 1475 self.assertEqual('*NE*', q['PatientName']) |
27 | 1476 self.assertEqual('*', q['StudyDate']) |
14 | 1477 |
1478 self.assertEqual(2, len(DoGet(_REMOTE, '/queries/%s/answers' % a))) | |
1479 | |
1480 s = DoGet(_REMOTE, '/queries/%s/answers/0' % a) | |
1481 self.assertTrue('content' in s) | |
1482 self.assertTrue('retrieve' in s) | |
1483 | |
1484 s = DoGet(_REMOTE, '/queries/%s/answers/0/content?simplify' % a) | |
1485 self.assertEqual('887', s['PatientID']) | |
1486 self.assertEqual('2.16.840.1.113669.632.20.121711.10000160881', s['StudyInstanceUID']) | |
1487 | |
1488 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) | |
1489 DoPost(_REMOTE, '/queries/%s/answers/0/retrieve' % a, 'ORTHANC') | |
1490 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1491 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1492 self.assertEqual(1, len(DoGet(_REMOTE, '/series'))) | |
1493 self.assertEqual(2, len(DoGet(_REMOTE, '/instances'))) | |
1494 | |
1495 DoPost(_REMOTE, '/queries/%s/answers/1/retrieve' % a, 'ORTHANC') | |
1496 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) | |
1497 self.assertEqual(1, len(DoGet(_REMOTE, '/studies'))) | |
1498 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1499 self.assertEqual(4, len(DoGet(_REMOTE, '/instances'))) | |
1500 | |
1501 DoDelete(_REMOTE, '/queries/%s' % a) | |
1502 self.assertEqual(0, len(DoGet(_REMOTE, '/queries'))) | |
1503 | |
1504 | |
1505 def test_parent(self): | |
1506 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1507 patient = '6816cb19-844d5aee-85245eba-28e841e6-2414fae2' | |
1508 study = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' | |
1509 series = 'f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe' | |
1510 instance = '66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d' | |
1511 self.assertEqual(instance, u); | |
1512 | |
1513 a = DoGet(_REMOTE, '/studies/%s/patient' % study) | |
1514 self.assertEqual('Patient', a['Type']) | |
1515 self.assertEqual(patient, a['ID']) | |
1516 | |
1517 a = DoGet(_REMOTE, '/series/%s/patient' % series) | |
1518 self.assertEqual('Patient', a['Type']) | |
1519 self.assertEqual(patient, a['ID']) | |
1520 | |
1521 a = DoGet(_REMOTE, '/series/%s/study' % series) | |
1522 self.assertEqual('Study', a['Type']) | |
1523 self.assertEqual(study, a['ID']) | |
1524 | |
1525 a = DoGet(_REMOTE, '/instances/%s/patient' % instance) | |
1526 self.assertEqual('Patient', a['Type']) | |
1527 self.assertEqual(patient, a['ID']) | |
1528 | |
1529 a = DoGet(_REMOTE, '/instances/%s/study' % instance) | |
1530 self.assertEqual('Study', a['Type']) | |
1531 self.assertEqual(study, a['ID']) | |
1532 | |
1533 a = DoGet(_REMOTE, '/instances/%s/series' % instance) | |
1534 self.assertEqual('Series', a['Type']) | |
1535 self.assertEqual(series, a['ID']) | |
1536 | |
1537 | |
1538 def test_shanon(self): | |
1539 def Anonymize(instance, replacements = {}): | |
1540 return DoPost(_REMOTE, '/instances/%s/anonymize' % instance, { 'Replace' : replacements }, 'application/json') | |
1541 | |
1542 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1543 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1544 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1545 | |
1546 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1547 ids = [ 'ozp00SjY2xG', | |
1548 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1549 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1550 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1551 | |
1552 a = ExtractDicomTags(Anonymize(u), tags) | |
1553 for i in range(4): | |
1554 self.assertNotEqual(ids[i], a[i]) | |
1555 self.assertTrue(a[4].startswith('Orthanc')) | |
1556 | |
1557 a = ExtractDicomTags(Anonymize(u, { 'PatientName' : 'toto' }), tags) | |
1558 for i in range(4): | |
1559 self.assertNotEqual(ids[i], a[i]) | |
1560 self.assertFalse(a[4].startswith('Orthanc')) | |
1561 | |
1562 a = ExtractDicomTags(Anonymize(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1563 self.assertEqual('instance', a[3]) | |
1564 self.assertFalse(a[4].startswith('Orthanc')) | |
1565 | |
1566 a = ExtractDicomTags(Anonymize(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1567 self.assertEqual('series', a[2]) | |
1568 self.assertFalse(a[4].startswith('Orthanc')) | |
1569 | |
1570 a = ExtractDicomTags(Anonymize(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1571 self.assertEqual('study', a[1]) | |
1572 self.assertFalse(a[4].startswith('Orthanc')) | |
1573 | |
1574 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient' }), tags) | |
1575 self.assertEqual('patient', a[0]) | |
1576 self.assertFalse(a[4].startswith('Orthanc')) | |
1577 | |
1578 a = ExtractDicomTags(Anonymize(u, { 'PatientID' : 'patient', | |
1579 'StudyInstanceUID' : 'study', | |
1580 'SeriesInstanceUID' : 'series', | |
1581 'SOPInstanceUID' : 'instance' }), tags) | |
1582 self.assertEqual('patient', a[0]) | |
1583 self.assertFalse(a[4].startswith('Orthanc')) | |
1584 | |
1585 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1586 | |
1587 | |
1588 def test_shanon_2(self): | |
1589 def Modify(instance, replacements = {}): | |
1590 return DoPost(_REMOTE, '/instances/%s/modify' % instance, { 'Replace' : replacements }, 'application/json') | |
1591 | |
1592 self.assertEqual(0, len(DoGet(_REMOTE, '/instances'))) | |
1593 u = UploadInstance(_REMOTE, 'DummyCT.dcm')['ID'] | |
1594 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1595 | |
1596 tags = [ 'PatientID', 'StudyInstanceUID', 'SeriesInstanceUID', 'SOPInstanceUID', 'DeidentificationMethod' ] | |
1597 ids = [ 'ozp00SjY2xG', | |
1598 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390', | |
1599 '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394', | |
1600 '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' ] | |
1601 | |
1602 a = ExtractDicomTags(Modify(u), tags) | |
1603 self.assertEqual(ids[0], a[0]) | |
1604 self.assertEqual(ids[1], a[1]) | |
1605 self.assertEqual(ids[2], a[2]) | |
1606 self.assertNotEqual(ids[3], a[3]) | |
1607 self.assertEqual(0, len(a[4])) | |
1608 | |
1609 a = ExtractDicomTags(Modify(u, { 'SOPInstanceUID' : 'instance' }), tags) | |
1610 self.assertEqual(ids[0], a[0]) | |
1611 self.assertEqual(ids[1], a[1]) | |
1612 self.assertEqual(ids[2], a[2]) | |
1613 self.assertEqual('instance', a[3]) | |
1614 | |
1615 a = ExtractDicomTags(Modify(u, { 'SeriesInstanceUID' : 'series' }), tags) | |
1616 self.assertEqual(ids[0], a[0]) | |
1617 self.assertEqual(ids[1], a[1]) | |
1618 self.assertEqual('series', a[2]) | |
1619 self.assertNotEqual(ids[3], a[3]) | |
1620 | |
1621 a = ExtractDicomTags(Modify(u, { 'StudyInstanceUID' : 'study' }), tags) | |
1622 self.assertEqual(ids[0], a[0]) | |
1623 self.assertEqual('study', a[1]) | |
1624 self.assertNotEqual(ids[2], a[2]) | |
1625 self.assertNotEqual(ids[3], a[3]) | |
1626 | |
1627 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient' }), tags) | |
1628 self.assertEqual('patient', a[0]) | |
1629 self.assertNotEqual(ids[1], a[1]) | |
1630 self.assertNotEqual(ids[2], a[2]) | |
1631 self.assertNotEqual(ids[3], a[3]) | |
1632 | |
1633 a = ExtractDicomTags(Modify(u, { 'PatientID' : 'patient', | |
1634 'StudyInstanceUID' : 'study', | |
1635 'SeriesInstanceUID' : 'series', | |
1636 'SOPInstanceUID' : 'instance' }), tags) | |
1637 self.assertEqual('patient', a[0]) | |
1638 self.assertEqual('study', a[1]) | |
1639 self.assertEqual('series', a[2]) | |
1640 self.assertEqual('instance', a[3]) | |
1641 | |
1642 self.assertEqual(1, len(DoGet(_REMOTE, '/instances'))) | |
1643 | |
1644 | |
1645 def test_instances_tags(self): | |
1646 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm')['ID'] | |
1647 b = UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm')['ID'] | |
1648 #a = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386937.676343')['ID'] | |
1649 #b = UploadInstance(_REMOTE, 'Cardiac/MR.X.1.2.276.0.7230010.3.1.4.2831157719.2256.1336386925.676329')['ID'] | |
1650 | |
1651 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/patients')[0]) | |
1652 self.assertEqual(2, len(i)) | |
1653 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1654 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1655 | |
1656 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/studies')[0]) | |
1657 self.assertEqual(2, len(i)) | |
1658 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1659 self.assertEqual('887', i[i.keys()[1]]['PatientID']) | |
1660 | |
1661 self.assertEqual(2, len(DoGet(_REMOTE, '/series'))) | |
1662 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[0]) | |
1663 self.assertEqual(1, len(i)) | |
1664 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1665 | |
1666 i = DoGet(_REMOTE, '/patients/%s/instances-tags?simplify' % DoGet(_REMOTE, '/series')[1]) | |
1667 self.assertEqual(1, len(i)) | |
1668 self.assertEqual('887', i[i.keys()[0]]['PatientID']) | |
1669 | |
1670 | |
1671 def test_lookup(self): | |
1672 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1673 self.assertEqual(0, len(a)) | |
1674 | |
1675 UploadInstance(_REMOTE, 'DummyCT.dcm') | |
1676 | |
1677 a = DoPost(_REMOTE, '/tools/lookup', 'ozp00SjY2xG') | |
1678 self.assertEqual(1, len(a)) | |
1679 self.assertEqual('Patient', a[0]['Type']) | |
1680 self.assertEqual('6816cb19-844d5aee-85245eba-28e841e6-2414fae2', a[0]['ID']) | |
1681 self.assertEqual('/patients/%s' % a[0]['ID'], a[0]['Path']) | |
1682 | |
1683 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390') | |
1684 self.assertEqual(1, len(a)) | |
1685 self.assertEqual('Study', a[0]['Type']) | |
1686 self.assertEqual('b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0', a[0]['ID']) | |
1687 self.assertEqual('/studies/%s' % a[0]['ID'], a[0]['Path']) | |
1688 | |
1689 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394') | |
1690 self.assertEqual(1, len(a)) | |
1691 self.assertEqual('Series', a[0]['Type']) | |
1692 self.assertEqual('f2635388-f01d497a-15f7c06b-ad7dba06-c4c599fe', a[0]['ID']) | |
1693 self.assertEqual('/series/%s' % a[0]['ID'], a[0]['Path']) | |
1694 | |
1695 a = DoPost(_REMOTE, '/tools/lookup', '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109') | |
1696 self.assertEqual(1, len(a)) | |
1697 self.assertEqual('Instance', a[0]['Type']) | |
1698 self.assertEqual('66a662ce-7430e543-bad44d47-0dc5a943-ec7a538d', a[0]['ID']) | |
1699 self.assertEqual('/instances/%s' % a[0]['ID'], a[0]['Path']) | |
1700 | |
1701 DropOrthanc(_REMOTE) | |
1702 a = DoPost(_REMOTE, '/tools/lookup', '3113719P') | |
1703 self.assertEqual(0, len(a)) | |
1704 | |
15 | 1705 |
1706 def test_autorouting(self): | |
1707 knee1 = 'Knee/T1/IM-0001-0001.dcm' | |
1708 knee2 = 'Knee/T2/IM-0001-0002.dcm' | |
1709 other = 'Brainix/Flair/IM-0001-0001.dcm' | |
1710 | |
1711 # Check that this version is >= 0.8.0 | |
1712 self.assertTrue(IsDefinedInLua(_REMOTE, '_InitializeJob')) | |
1713 self.assertTrue('orthanctest' in DoGet(_REMOTE, '/modalities')) | |
1714 | |
1715 UploadInstance(_REMOTE, knee1) | |
1716 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1717 | |
1718 DropOrthanc(_REMOTE) | |
1719 DropOrthanc(_LOCAL) | |
1720 InstallLuaScript('Lua/Autorouting.lua') | |
1721 UploadInstance(_REMOTE, knee1) | |
1722 UploadInstance(_REMOTE, knee2) | |
1723 UploadInstance(_REMOTE, other) | |
1724 WaitEmpty(_REMOTE) | |
1725 UninstallLuaCallbacks() | |
1726 self.assertEqual(3, len(DoGet(_LOCAL, '/instances'))) | |
1727 | |
1728 DropOrthanc(_REMOTE) | |
1729 DropOrthanc(_LOCAL) | |
1730 InstallLuaScript('Lua/AutoroutingConditional.lua') | |
1731 UploadInstance(_REMOTE, knee1) | |
1732 UploadInstance(_REMOTE, knee2) | |
1733 UploadInstance(_REMOTE, other) | |
1734 WaitEmpty(_REMOTE) | |
1735 UninstallLuaCallbacks() | |
1736 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) | |
1737 | |
1738 DropOrthanc(_REMOTE) | |
1739 DropOrthanc(_LOCAL) | |
1740 InstallLuaScript('Lua/AutoroutingModification.lua') | |
1741 UploadInstance(_REMOTE, knee1) | |
1742 WaitEmpty(_REMOTE) | |
1743 UninstallLuaCallbacks() | |
1744 i = DoGet(_LOCAL, '/instances') | |
1745 self.assertEqual(1, len(i)) | |
1746 | |
1747 with tempfile.NamedTemporaryFile(delete = True) as f: | |
1748 f.write(DoGet(_LOCAL, '/instances/%s/file' % i[0])) | |
1749 f.flush() | |
1750 routed = subprocess.check_output([ 'dcm2xml', f.name ]) | |
1751 self.assertEqual('My Medical Device', re.search('"StationName">(.*?)<', routed).group(1).strip()) | |
1752 self.assertEqual(None, re.search('"MilitaryRank"', routed)) | |
1753 self.assertEqual(None, re.search('"0051,0010"', routed)) # A private tag | |
17 | 1754 |
1755 | |
1756 def test_storescu_rf(self): | |
1757 i = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] | |
1758 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) | |
1759 j = DoPost(_REMOTE, '/modalities/orthanctest/store', str(i), 'text/plain') | |
1760 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) | |
18 | 1761 |
1762 | |
1763 def test_anonymize_instance(self): | |
1764 def AnonymizeAndUpload(instanceId, parameters): | |
1765 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/anonymize' % instanceId, parameters, | |
1766 'application/json'), 'application/dicom')['ID'] | |
1767 | |
1768 def ModifyAndUpload(instanceId, parameters): | |
1769 return DoPost(_REMOTE, '/instances', DoPost(_REMOTE, '/instances/%s/modify' % instanceId, parameters, | |
1770 'application/json'), 'application/dicom')['ID'] | |
1771 | |
1772 a = UploadInstance(_REMOTE, 'PrivateMDNTags.dcm')['ID'] | |
1773 s1 = DoGet(_REMOTE, '/instances/%s/content/PatientName' % a) | |
1774 s2 = DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % a) # Some private tag | |
1775 s3 = DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % a) | |
1776 s4 = DoGet(_REMOTE, '/instances/%s/content/SeriesDescription' % a) | |
1777 s5 = DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1778 | |
1779 b = AnonymizeAndUpload(a, '{}') | |
1780 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1781 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1782 | |
1783 # Keep private tag (only OK since Orthanc 0.8.0) | |
1784 b = AnonymizeAndUpload(a, '{"Keep":["00e1-10c2"]}') | |
1785 self.assertNotEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1786 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1787 | |
1788 b = AnonymizeAndUpload(a, '{"Keep":["00e1,10c2","PatientName"]}') | |
1789 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1790 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1791 | |
1792 b = AnonymizeAndUpload(a, '{"Keep":["PatientName"],"Replace":{"00e1,10c2":"Hello"}}') | |
1793 self.assertEqual(s1, DoGet(_REMOTE, '/instances/%s/content/PatientName' % b)) | |
1794 self.assertTrue(DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b).startswith('Hello')) | |
1795 | |
1796 # Examples from the Wiki | |
1797 b = AnonymizeAndUpload(a, '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null}') | |
1798 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1799 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1800 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1801 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1802 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1803 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1804 DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % a) | |
1805 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1806 | |
1807 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"},"Remove":["InstitutionName"],"RemovePrivateTags": null}') | |
1808 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1809 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1810 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1811 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008,103e' % b)) | |
1812 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/00e1-10c2' % b)) | |
1813 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1814 | |
1815 b = ModifyAndUpload(a, '{"Replace":{"PatientName":"hello","PatientID":"world"}}') | |
1816 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/0010-0010' % b).strip()) | |
1817 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/PatientID' % b).strip()) | |
1818 self.assertEqual(s2, DoGet(_REMOTE, '/instances/%s/content/00e1,10c2' % b)) | |
1819 self.assertEqual(s3, DoGet(_REMOTE, '/instances/%s/content/0008,1030' % b)) | |
1820 self.assertEqual(s4, DoGet(_REMOTE, '/instances/%s/content/0008-103E' % b)) | |
1821 self.assertEqual(s5, DoGet(_REMOTE, '/instances/%s/content/InstitutionName' % b)) | |
1822 | |
1823 | |
1824 # Test modify non-existing | |
1825 i = DoPost(_REMOTE, '/tools/create-dicom', | |
1826 json.dumps({ | |
1827 'PatientName' : 'Jodogne', | |
1828 'Modality' : 'CT', | |
1829 }))['ID'] | |
1830 | |
1831 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i).strip()) | |
1832 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % i)) | |
1833 self.assertEqual('CT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i).strip()) | |
1834 | |
1835 b = ModifyAndUpload(i, '{"Replace":{"StudyDescription":"hello","Modality":"world"}}') | |
1836 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % b).strip()) | |
1837 self.assertEqual('hello', DoGet(_REMOTE, '/instances/%s/content/StudyDescription' % b).strip()) | |
1838 self.assertEqual('world', DoGet(_REMOTE, '/instances/%s/content/Modality' % b).strip()) | |
1839 | |
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1840 |
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1841 def test_incoming_jpeg(self): |
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1842 def storescu(): |
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1843 with open(os.devnull, 'w') as FNULL: |
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1844 subprocess.check_call([ 'storescu', '-xs', |
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1845 _REMOTE['Server'], str(_REMOTE['DicomPort']), |
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1846 GetDatabasePath('Knix/Loc/IM-0001-0001.dcm') ], |
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1847 stderr = FNULL) |
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1848 |
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1849 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1850 InstallLuaScript('Lua/TransferSyntaxDisable.lua') |
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1851 self.assertRaises(Exception, storescu) |
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1852 self.assertEqual(0, len(DoGet(_REMOTE, '/patients'))) |
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1853 InstallLuaScript('Lua/TransferSyntaxEnable.lua') |
43 | 1854 DoPost(_REMOTE, '/tools/execute-script', "print('All special transfer syntaxes are now accepted')") |
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1855 storescu() |
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1856 self.assertEqual(1, len(DoGet(_REMOTE, '/patients'))) |
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1857 |
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1858 |
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1859 def test_storescu_jpeg(self): |
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1860 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1861 |
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1862 knixStudy = 'b9c08539-26f93bde-c81ab0d7-bffaf2cb-a4d0bdd0' |
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1863 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm') |
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1864 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0002.dcm') |
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1865 UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0003.dcm') |
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1866 |
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1867 a = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] |
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1868 b = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1869 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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1870 DoPost(_REMOTE, '/modalities/orthanctest/store', [ knixStudy, a, b ]) |
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1871 self.assertEqual(5, len(DoGet(_LOCAL, '/instances'))) |
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1872 |
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1873 self.assertEqual(3, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1874 |
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1875 DropOrthanc(_REMOTE) |
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1876 self.assertEqual(0, len(DoGet(_REMOTE, '/exports')['Exports'])) |
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1877 |
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1878 |
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1879 def test_pixel_data(self): |
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1880 jpeg = UploadInstance(_REMOTE, 'Knix/Loc/IM-0001-0001.dcm')['ID'] |
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1881 color = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1882 phenix = UploadInstance(_REMOTE, 'Phenix/IM-0001-0001.dcm')['ID'] |
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1883 |
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1884 phenixSize = 358 * 512 * 2 |
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1885 colorSize = 1000 * 1000 * 3 |
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1886 jpegSize = 51918 |
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1887 |
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1888 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % phenix))) |
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1889 self.assertEqual(1, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % color))) |
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1890 self.assertEqual(2, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010' % jpeg))) |
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1891 |
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1892 self.assertEqual(0, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % jpeg))) |
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1893 self.assertEqual(jpegSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/1' % jpeg))) |
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1894 |
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1895 self.assertEqual(phenixSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % phenix))) |
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1896 self.assertEqual(colorSize, len(DoGet(_REMOTE, '/instances/%s/content/7fe0-0010/0' % color))) |
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1897 |
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1898 |
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1899 def test_decode_brainix(self): |
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1900 brainix = [ |
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1901 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'], # (*) |
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1902 UploadInstance(_REMOTE, 'Formats/JpegLossless.dcm')['ID'], # JPEG-LS, same as (*) (since Orthanc 0.7.6) |
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1903 UploadInstance(_REMOTE, 'Formats/Jpeg.dcm')['ID'], # JPEG, same as (*) (since Orthanc 0.7.6) |
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1904 ] |
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1905 h = '6fb11b932d535c2be04beabd99793ff8' |
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1906 maxValue = 426.0 |
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1907 |
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1908 truth = Image.open(GetDatabasePath('Formats/Brainix.png')) |
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1909 for i in brainix: |
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1910 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % i) |
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1911 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % i) |
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1912 |
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1913 truth2 = map(lambda x: min(255, x), truth.getdata()) |
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1914 for i in brainix: |
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1915 self.AssertSameImages(truth2, '/instances/%s/image-uint8' % i) |
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1916 |
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1917 truth2 = map(lambda x: x * 255.0 / maxValue, truth.getdata()) |
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1918 for i in brainix: |
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1919 self.AssertSameImages(truth2, '/instances/%s/preview' % i) |
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1920 |
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1921 for i in brainix: |
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1922 self.assertEqual(h, ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % i))) |
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1923 |
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1924 |
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1925 def test_decode_color(self): |
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1926 imagej = UploadInstance(_REMOTE, 'ColorTestImageJ.dcm')['ID'] |
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1927 color = UploadInstance(_REMOTE, 'ColorTestMalaterre.dcm')['ID'] |
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1928 |
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1929 for i in [ imagej, color ]: |
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1930 for j in [ 'image-uint8', 'image-uint16', 'image-int16' ]: |
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1931 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/%s' % (i, j))) |
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1932 |
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1933 self.assertEqual('c14c687f7a1ea9fe022479fc87c67274', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % imagej))) |
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1934 self.assertEqual('a87d122918a56f803bcfe9d2586b9125', ComputeMD5(DoGet(_REMOTE, '/instances/%s/preview' % color))) |
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1935 |
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1936 self.assertEqual('30cc46bfa7aba77a40e4178f6184c25a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % imagej))) |
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1937 self.assertEqual('ff195005cef06b59666fd220a9b4cd9a', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % color))) |
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1938 |
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1939 |
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1940 def test_decode_rf(self): |
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1941 rf = UploadInstance(_REMOTE, 'KarstenHilbertRF.dcm')['ID'] |
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1942 truth = Image.open(GetDatabasePath('Formats/KarstenHilbertRF.png')) |
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1943 |
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1944 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % rf) |
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1945 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % rf) |
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1946 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % rf) |
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1947 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % rf) |
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1948 |
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1949 self.assertEqual('42254d70efd2f4a1b8f3455909689f0e', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % rf))) |
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1950 |
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1951 |
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1952 def test_decode_multiframe(self): |
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1953 mf = UploadInstance(_REMOTE, 'Multiframe.dcm')['ID'] |
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1954 |
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1955 # Test the first frame |
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1956 truth = Image.open(GetDatabasePath('Formats/Multiframe0.png')) |
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1957 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint8' % mf) |
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1958 self.AssertSameImages(truth.getdata(), '/instances/%s/image-uint16' % mf) |
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1959 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % mf) |
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1960 self.AssertSameImages(truth.getdata(), '/instances/%s/preview' % mf) |
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1961 self.assertEqual('9812b99d93bbcd4e7684ded089b5dfb3', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % mf))) |
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1962 |
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1963 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/0/image-uint16' % mf) |
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1964 |
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1965 # Test the last frame |
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1966 truth = Image.open(GetDatabasePath('Formats/Multiframe75.png')) |
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1967 self.AssertSameImages(truth.getdata(), '/instances/%s/frames/75/image-uint16' % mf) |
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1968 |
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1969 |
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1970 def test_decode_signed(self): |
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1971 signed = UploadInstance(_REMOTE, 'SignedCT.dcm')['ID'] |
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1972 minValue = -2000 |
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1973 maxValue = 4042 |
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1974 |
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1975 truth = Image.open(GetDatabasePath('Formats/SignedCT.png')) |
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1976 self.AssertSameImages(truth.getdata(), '/instances/%s/image-int16' % signed) |
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1977 |
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1978 truth2 = map(lambda x: 0 if x >= 32768 else x, truth.getdata()) |
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1979 self.AssertSameImages(truth2, '/instances/%s/image-uint16' % signed) |
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1980 |
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1981 truth3 = map(lambda x: 255 if x >= 256 else x, truth2) |
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1982 self.AssertSameImages(truth3, '/instances/%s/image-uint8' % signed) |
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1983 |
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1984 tmp = map(lambda x: x - 65536 if x >= 32768 else x, truth.getdata()) |
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1985 tmp = map(lambda x: (255.0 * (x - minValue)) / (maxValue - minValue), tmp) |
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1986 self.AssertSameImages(tmp, '/instances/%s/preview' % signed) |
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1987 |
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1988 self.assertEqual('b57e6c872a3da50877c7da689b03a444', ComputeMD5(DoGet(_REMOTE, '/instances/%s/matlab' % signed))) |
22 | 1989 |
1990 | |
1991 def test_issue_32(self): | |
1992 f = UploadInstance(_REMOTE, 'Issue32.dcm')['ID'] | |
1993 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % f) | |
1994 self.assertEqual(u'Рентгенография', tags['SeriesDescription']) | |
1995 self.assertEqual(u'Таз', tags['BodyPartExamined']) | |
1996 self.assertEqual(u'Прямая', tags['ViewPosition']) | |
1997 | |
1998 | |
1999 def test_encodings(self): | |
23 | 2000 # Latin-1 (ISO_IR 100) |
22 | 2001 brainix = UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm')['ID'] |
2002 tags = DoGet(_REMOTE, '/instances/%s/tags?simplify' % brainix) | |
2003 self.assertEqual(u'IRM cérébrale, neuro-crâne', tags['StudyDescription']) | |
23 | 2004 |
2005 # Latin-2 (ISO_IR 101) | |
2006 a = UploadInstance(_REMOTE, 'MarekLatin2.dcm')['ID'] | |
2007 i = DoGet(_REMOTE, '/instances/%s/simplified-tags' % a) | |
2008 # dcm2xml MarekLatin2.dcm | iconv -f latin2 -t utf-8 | xmllint --format - | |
2009 self.assertEqual('Imię i Nazwisko osoby opisującej', | |
2010 i['ContentSequence'][4]['ConceptNameCodeSequence'][0]['CodeMeaning'].encode('utf-8')) | |
2011 | |
26
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2012 |
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2013 def test_storescu_custom_aet(self): |
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2014 # This tests a feature introduced in Orthanc 0.9.1: "Custom |
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2015 # setting of the local AET during C-Store SCU (both in Lua and |
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2016 # in the REST API)." |
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2017 # https://groups.google.com/forum/#!msg/orthanc-users/o5qMULformU/wZjW2iSaMcAJ |
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2018 |
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2019 self.assertEqual(0, len(DoGet(_LOCAL, '/patients'))) |
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2020 |
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2021 a = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2022 b = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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2023 c = UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0003.dcm') |
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2024 |
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2025 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2026 'LocalAet' : 'YOP', |
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2027 'Resources' : [ a['ID'], b['ID'] ] |
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2028 }) |
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2029 |
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2030 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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2031 self.assertEqual('YOP', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2032 |
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2033 DropOrthanc(_LOCAL) |
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2034 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2035 |
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2036 j = DoPost(_REMOTE, '/modalities/orthanctest/store', { |
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2037 'Resources' : [ c['ID'] ] |
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2038 }) |
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2039 |
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2040 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2041 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % c['ID'])) |
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2042 |
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2043 DropOrthanc(_REMOTE) |
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2044 DropOrthanc(_LOCAL) |
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2045 |
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2046 InstallLuaScript('Lua/AutoroutingChangeAet.lua') |
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test_storescu_custom_aet
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diff
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2047 DoPost(_REMOTE, '/tools/execute-script', 'aet = "HELLO"', 'application/lua') |
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2048 |
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2049 self.assertEqual(0, len(DoGet(_LOCAL, '/instances'))) |
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2050 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') |
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2051 WaitEmpty(_REMOTE) |
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2052 self.assertEqual(1, len(DoGet(_LOCAL, '/instances'))) |
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2053 self.assertEqual('HELLO', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % a['ID'])) |
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2054 |
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test_storescu_custom_aet
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|
2055 DoPost(_REMOTE, '/tools/execute-script', 'aet = nill', 'application/lua') |
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2056 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0002.dcm') |
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test_storescu_custom_aet
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2057 WaitEmpty(_REMOTE) |
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test_storescu_custom_aet
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diff
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2058 self.assertEqual(2, len(DoGet(_LOCAL, '/instances'))) |
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test_storescu_custom_aet
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diff
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2059 self.assertEqual('ORTHANC', DoGet(_LOCAL, '/instances/%s/metadata/RemoteAET' % b['ID'])) |
34
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2060 |
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2061 def test_resources_since_limit(self): |
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2062 # Upload 16 instances |
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2063 for i in range(4): |
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2064 UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-000%d.dcm' % (i + 1)) |
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2065 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-000%d.dcm' % (i + 1)) |
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2066 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-000%d.dcm' % (i + 1)) |
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2067 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-000%d.dcm' % (i + 1)) |
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|
2068 |
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2069 self.assertEqual(2, len(DoGet(_REMOTE, '/patients'))) |
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2070 self.assertEqual(2, len(DoGet(_REMOTE, '/studies'))) |
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2071 self.assertEqual(4, len(DoGet(_REMOTE, '/series'))) |
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2072 self.assertEqual(16, len(DoGet(_REMOTE, '/instances'))) |
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|
2073 |
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2074 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&since=10' % i)) |
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2075 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/patients&limit=10' % i)) |
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|
2076 |
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2077 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=0&limit=0'))) |
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2078 self.assertEqual(2, len(DoGet(_REMOTE, '/patients?since=0&limit=100'))) |
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2079 self.assertEqual(2, len(DoGet(_REMOTE, '/studies?since=0&limit=100'))) |
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2080 self.assertEqual(4, len(DoGet(_REMOTE, '/series?since=0&limit=100'))) |
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2081 self.assertEqual(16, len(DoGet(_REMOTE, '/instances?since=0&limit=100'))) |
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2082 self.assertEqual(1, len(DoGet(_REMOTE, '/patients?since=1&limit=100'))) |
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2083 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=2&limit=100'))) |
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2084 self.assertEqual(0, len(DoGet(_REMOTE, '/patients?since=3&limit=100'))) |
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|
2085 self.assertEqual(1, len(DoGet(_REMOTE, '/studies?since=1&limit=100'))) |
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|
2086 self.assertEqual(3, len(DoGet(_REMOTE, '/series?since=1&limit=100'))) |
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2087 self.assertEqual(2, len(DoGet(_REMOTE, '/series?since=2&limit=100'))) |
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2088 self.assertEqual(1, len(DoGet(_REMOTE, '/series?since=3&limit=100'))) |
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|
2089 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=4&limit=100'))) |
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|
2090 self.assertEqual(0, len(DoGet(_REMOTE, '/series?since=100&limit=100'))) |
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2091 self.assertEqual(15, len(DoGet(_REMOTE, '/instances?since=1&limit=100'))) |
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|
2092 |
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2093 for limit in [ 1, 2, 3, 7, 16, 17 ]: |
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2094 s = {} |
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2095 since = 0 |
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2096 while True: |
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2097 t = DoGet(_REMOTE, '/instances?since=%d&limit=%d' % (since, limit)) |
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|
2098 if len(t) == 0: |
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|
2099 break |
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|
2100 |
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|
2101 since += len(t) |
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|
2102 for i in t: |
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|
2103 s[i] = None |
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2104 |
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|
2105 self.assertEqual(16, len(s)) |
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2106 for instance in DoGet(_REMOTE, '/instances'): |
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2107 self.assertTrue(instance in s) |
36 | 2108 |
2109 | |
2110 def test_create_pdf(self): | |
2111 # Upload 4 instances | |
2112 brainixInstance = UploadInstance(_REMOTE, 'Brainix/Flair/IM-0001-0001.dcm')['ID'] | |
2113 UploadInstance(_REMOTE, 'Brainix/Epi/IM-0001-0001.dcm') | |
2114 UploadInstance(_REMOTE, 'Knee/T1/IM-0001-0001.dcm') | |
2115 UploadInstance(_REMOTE, 'Knee/T2/IM-0001-0001.dcm') | |
2116 | |
2117 brainixPatient = '16738bc3-e47ed42a-43ce044c-a3414a45-cb069bd0' | |
2118 brainixStudy = '27f7126f-4f66fb14-03f4081b-f9341db2-53925988' | |
2119 brainixEpi = '2ac1316d-3e432022-62eabff2-c59f5475-9b1ac3f8' | |
2120 | |
2121 with open(GetDatabasePath('HelloWorld.pdf'), 'rb') as f: | |
2122 pdf = f.read() | |
2123 | |
2124 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2125 json.dumps({ | |
2126 'Tags' : { | |
2127 'PatientName' : 'Jodogne', | |
2128 'Modality' : 'CT', | |
2129 }, | |
2130 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2131 })) | |
2132 | |
2133 self.assertEqual('Jodogne', DoGet(_REMOTE, '/instances/%s/content/PatientName' % i['ID']).strip()) | |
2134 self.assertEqual('OT', DoGet(_REMOTE, '/instances/%s/content/Modality' % i['ID']).strip()) | |
2135 | |
2136 b = DoGet(_REMOTE, '/instances/%s/content/0042-0011' % i['ID']) | |
2137 self.assertEqual(len(b), len(pdf) + 1) | |
2138 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf + '\0')) | |
2139 | |
2140 self.assertRaises(Exception, lambda: DoPost(_REMOTE, '/tools/create-dicom', | |
2141 json.dumps({ | |
2142 'Parent' : brainixPatient, | |
2143 'Tags' : { | |
2144 'PatientName' : 'Jodogne', | |
2145 } | |
2146 }))) | |
2147 | |
2148 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2149 json.dumps({ | |
2150 'Parent' : brainixPatient, | |
2151 'Tags' : { 'StudyDescription' : 'PDF^Patient' }, | |
2152 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2153 })) | |
2154 | |
2155 self.assertEqual(brainixPatient, DoGet(_REMOTE, '/instances/%s/patient' % i['ID'])['ID']) | |
2156 | |
2157 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2158 json.dumps({ | |
2159 'Parent' : brainixStudy, | |
2160 'Tags' : { 'SeriesDescription' : 'PDF^Study' }, | |
2161 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) | |
2162 })) | |
2163 | |
2164 self.assertEqual(brainixStudy, DoGet(_REMOTE, '/instances/%s/study' % i['ID'])['ID']) | |
2165 | |
2166 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2167 json.dumps({ | |
2168 'Parent' : brainixEpi, | |
37 | 2169 'Tags' : { 'SpecificCharacterSet' : 'ISO_IR 13' }, |
36 | 2170 'Content' : 'data:application/pdf;base64,' + base64.b64encode(pdf) |
2171 })) | |
2172 | |
2173 self.assertEqual(brainixEpi, DoGet(_REMOTE, '/instances/%s/series' % i['ID'])['ID']) | |
2174 | |
2175 b = DoGet(_REMOTE, '/instances/%s/pdf' % i['ID']) | |
2176 self.assertEqual(len(b), len(pdf)) | |
2177 self.assertEqual(ComputeMD5(b), ComputeMD5(pdf)) | |
2178 | |
2179 self.assertRaises(Exception, lambda: DoGet(_REMOTE, '/instances/%s/pdf' % brainixInstance)) | |
38 | 2180 |
2181 | |
2182 def test_create_series(self): | |
2183 i = DoPost(_REMOTE, '/tools/create-dicom', | |
2184 json.dumps({ | |
2185 'Tags' : { | |
40 | 2186 'SpecificCharacterSet' : 'ISO_IR 100', |
2187 'PatientName' : 'Sébastien Jodogne', | |
38 | 2188 'Modality' : 'CT', |
2189 }, | |
2190 'Content' : [ | |
40 | 2191 { |
2192 'Content': 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==', # red dot in RGBA | |
2193 'Tags' : { 'ImageComments' : 'Tutu' } | |
2194 }, | |
38 | 2195 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAYAAAAf8/9hAAAAoUlEQVQ4jZ2SWw3EIBREjwUsYAELa2EtoAULFUCyXAtroRZqoRbox254BdLC/DZnZjoXWJFgCDg8egW2CBEhEnDzyRk+Ecxz2KP/0AL8S99T+jQccAVs22qKwAuPuq0uyNg9cPLh3am+pe/dkHLZtqJHj6vXJrZ7nvzvxxgemXgUwnGfXqpee09mUwp8m022OYP6bLF7mVuVe0y/umxinsAXRd9z0k1ubWsAAAAASUVORK5CYII=', |
2196 ] | |
2197 })) | |
2198 | |
2199 s = DoGet(_REMOTE, i['Path']) | |
2200 self.assertEqual('Series', s['Type']) | |
2201 self.assertEqual(s['ID'], i['ID']) | |
2202 self.assertEqual(2, len(s['Instances'])) | |
39 | 2203 self.assertEqual(2, s['ExpectedNumberOfInstances']) |
2204 self.assertEqual('Complete', s['Status']) | |
40 | 2205 |
2206 a = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][0]) | |
2207 b = DoGet(_REMOTE, '/instances/%s/tags?simplify' % s['Instances'][1]) | |
2208 self.assertTrue('ImageComments' in a or 'ImageComments' in b) | |
2209 if 'ImageComments' in a: | |
2210 self.assertEqual('Tutu', a['ImageComments']) | |
2211 else: | |
2212 self.assertEqual('Tutu', b['ImageComments']) | |
2213 | |
2214 patient = DoGet(_REMOTE, '/instances/%s/patient' % s['Instances'][0]) | |
2215 self.assertEqual(patient['MainDicomTags']['PatientName'].encode('utf-8'), | |
2216 'Sébastien Jodogne') |