Mercurial > hg > orthanc-databases

annotate Framework/Plugins/IndexBackend.h @ 577:991b9b285e1a attach-custom-data tip

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fix custom-data handling
author Alain Mazy <am@orthanc.team>
date Wed, 02 Oct 2024 09:40:20 +0200
parents f18e46d7dbf8
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Affero General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Affero General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Affero General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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23
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24 #pragma once
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26 #include "IDatabaseBackend.h"
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28 #include <OrthancException.h>
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30 #include <boost/thread/shared_mutex.hpp>
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33 namespace OrthancDatabases
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34 {
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35 /**
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36 * WARNING: This class can be invoked concurrently by several
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37 * threads if it is used from "DatabaseBackendAdapterV3".
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38 **/
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39 class IndexBackend : public IDatabaseBackend
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40 {
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41 private:
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42 class LookupFormatter;
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43
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44 OrthancPluginContext* context_;
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45
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46 boost::shared_mutex outputFactoryMutex_;
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47 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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48
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49 protected:
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50 virtual void ClearDeletedFiles(DatabaseManager& manager);
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51
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52 virtual void ClearDeletedResources(DatabaseManager& manager);
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53
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54 virtual void ClearRemainingAncestor(DatabaseManager& manager);
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56 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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57 DatabaseManager& manager);
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59 void SignalDeletedResources(IDatabaseBackendOutput& output,
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60 DatabaseManager& manager);
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61
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62 private:
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63 void ReadChangesInternal(IDatabaseBackendOutput& output,
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64 bool& done,
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65 DatabaseManager& manager,
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66 DatabaseManager::CachedStatement& statement,
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67 const Dictionary& args,
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68 uint32_t limit,
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69 bool returnFirstResults);
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71 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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72 bool& done,
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73 DatabaseManager::CachedStatement& statement,
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74 const Dictionary& args,
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75 uint32_t limit);
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77 public:
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78 explicit IndexBackend(OrthancPluginContext* context);
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79
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80 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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81 {
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82 return context_;
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83 }
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84
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85 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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87 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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89 virtual void AddAttachment(DatabaseManager& manager,
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90 int64_t id,
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91 const OrthancPluginAttachment& attachment,
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92 int64_t revision) ORTHANC_OVERRIDE;
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93
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94 #if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 12, 6)
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95 // New in Orthanc 1.12.6
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96 virtual void AddAttachment(Orthanc::DatabasePluginMessages::TransactionResponse& response,
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97 DatabaseManager& manager,
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98 const Orthanc::DatabasePluginMessages::AddAttachment_Request& request) ORTHANC_OVERRIDE;
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99 #endif
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101 // #if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 12, 6)
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103 // virtual void AddAttachment2(DatabaseManager& manager,
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104 // int64_t id,
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105 // const OrthancPluginAttachment2& attachment,
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106 // int64_t revision) ORTHANC_OVERRIDE;
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107
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108 // #endif
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109
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110 virtual void AttachChild(DatabaseManager& manager,
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111 int64_t parent,
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112 int64_t child) ORTHANC_OVERRIDE;
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114 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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116 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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118 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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119 DatabaseManager& manager,
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120 int64_t id,
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121 int32_t attachment) ORTHANC_OVERRIDE;
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123 virtual void DeleteMetadata(DatabaseManager& manager,
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124 int64_t id,
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125 int32_t metadataType) ORTHANC_OVERRIDE;
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127 virtual void DeleteResource(IDatabaseBackendOutput& output,
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128 DatabaseManager& manager,
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129 int64_t id) ORTHANC_OVERRIDE;
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130
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131 virtual void GetAllInternalIds(std::list<int64_t>& target,
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132 DatabaseManager& manager,
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133 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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134
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135 virtual void GetAllPublicIds(std::list<std::string>& target,
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136 DatabaseManager& manager,
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137 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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138
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139 virtual void GetAllPublicIds(std::list<std::string>& target,
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140 DatabaseManager& manager,
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141 OrthancPluginResourceType resourceType,
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142 int64_t since,
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143 uint32_t limit) ORTHANC_OVERRIDE;
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144
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145 virtual void GetChanges(IDatabaseBackendOutput& output,
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146 bool& done /*out*/,
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147 DatabaseManager& manager,
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148 int64_t since,
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149 uint32_t limit) ORTHANC_OVERRIDE;
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150
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151 virtual void GetChangesExtended(IDatabaseBackendOutput& output,
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152 bool& done /*out*/,
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153 DatabaseManager& manager,
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154 int64_t since,
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155 int64_t to,
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156 const std::set<uint32_t>& changeTypes,
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157 uint32_t limit) ORTHANC_OVERRIDE;
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158
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159 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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160 DatabaseManager& manager,
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161 int64_t id) ORTHANC_OVERRIDE;
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162
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163 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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164 DatabaseManager& manager,
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165 int64_t id) ORTHANC_OVERRIDE;
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166
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167 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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168 bool& done /*out*/,
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169 DatabaseManager& manager,
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170 int64_t since,
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171 uint32_t limit) ORTHANC_OVERRIDE;
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172
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173 virtual void GetLastChange(IDatabaseBackendOutput& output,
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174 DatabaseManager& manager) ORTHANC_OVERRIDE;
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175
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176 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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177 DatabaseManager& manager) ORTHANC_OVERRIDE;
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178
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179 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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180 DatabaseManager& manager,
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181 int64_t id) ORTHANC_OVERRIDE;
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182
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183 virtual std::string GetPublicId(DatabaseManager& manager,
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184 int64_t resourceId) ORTHANC_OVERRIDE;
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185
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186 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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187 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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188
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189 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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190 int64_t resourceId) ORTHANC_OVERRIDE;
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191
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192 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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193
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194 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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195
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196 virtual bool IsExistingResource(DatabaseManager& manager,
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197 int64_t internalId) ORTHANC_OVERRIDE;
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198
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199 virtual bool IsProtectedPatient(DatabaseManager& manager,
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200 int64_t internalId) ORTHANC_OVERRIDE;
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201
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202 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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203 DatabaseManager& manager,
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204 int64_t id) ORTHANC_OVERRIDE;
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205
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206 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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207 DatabaseManager& manager,
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208 int64_t id) ORTHANC_OVERRIDE;
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209
225
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210 virtual void LogChange(DatabaseManager& manager,
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211 int32_t changeType,
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212 int64_t resourceId,
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213 OrthancPluginResourceType resourceType,
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214 const char* date) ORTHANC_OVERRIDE;
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215
225
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216 virtual void LogExportedResource(DatabaseManager& manager,
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217 OrthancPluginResourceType resourceType,
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218 const char* publicId,
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219 const char* modality,
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220 const char* date,
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221 const char* patientId,
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222 const char* studyInstanceUid,
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223 const char* seriesInstanceUid,
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224 const char* sopInstanceUid) ORTHANC_OVERRIDE;
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225
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226 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
261
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227 int64_t& revision /*out*/,
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228 DatabaseManager& manager,
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229 int64_t id,
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230 int32_t contentType) ORTHANC_OVERRIDE;
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231
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232 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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233 DatabaseManager& manager,
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234 const char* serverIdentifier,
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235 int32_t property) ORTHANC_OVERRIDE;
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236
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237 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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238 DatabaseManager& manager,
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239 OrthancPluginResourceType resourceType,
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240 uint16_t group,
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241 uint16_t element,
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242 OrthancPluginIdentifierConstraint constraint,
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243 const char* value) ORTHANC_OVERRIDE;
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244
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245 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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246 DatabaseManager& manager,
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247 OrthancPluginResourceType resourceType,
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248 uint16_t group,
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249 uint16_t element,
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250 const char* start,
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251 const char* end) ORTHANC_OVERRIDE;
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252
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253 virtual bool LookupMetadata(std::string& target /*out*/,
256
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254 int64_t& revision /*out*/,
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255 DatabaseManager& manager,
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256 int64_t id,
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257 int32_t metadataType) ORTHANC_OVERRIDE;
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258
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259 virtual bool LookupParent(int64_t& parentId /*out*/,
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260 DatabaseManager& manager,
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261 int64_t resourceId) ORTHANC_OVERRIDE;
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262
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263 virtual bool LookupResource(int64_t& id /*out*/,
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264 OrthancPluginResourceType& type /*out*/,
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265 DatabaseManager& manager,
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266 const char* publicId) ORTHANC_OVERRIDE;
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267
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268 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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269 DatabaseManager& manager) ORTHANC_OVERRIDE;
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270
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271 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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272 DatabaseManager& manager,
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273 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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274
225
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275 virtual void SetGlobalProperty(DatabaseManager& manager,
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276 const char* serverIdentifier,
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277 int32_t property,
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278 const char* utf8) ORTHANC_OVERRIDE;
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279
225
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280 virtual void SetMainDicomTag(DatabaseManager& manager,
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281 int64_t id,
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282 uint16_t group,
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283 uint16_t element,
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284 const char* value) ORTHANC_OVERRIDE;
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285
225
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286 virtual void SetIdentifierTag(DatabaseManager& manager,
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287 int64_t id,
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288 uint16_t group,
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289 uint16_t element,
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290 const char* value) ORTHANC_OVERRIDE;
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291
225
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292 virtual void SetMetadata(DatabaseManager& manager,
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293 int64_t id,
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294 int32_t metadataType,
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295 const char* value,
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296 int64_t revision) ORTHANC_OVERRIDE;
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297
225
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298 virtual void SetProtectedPatient(DatabaseManager& manager,
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299 int64_t internalId,
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300 bool isProtected) ORTHANC_OVERRIDE;
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301
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302 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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303
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304 virtual void UpgradeDatabase(DatabaseManager& manager,
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305 uint32_t targetVersion,
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306 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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307
225
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308 virtual void ClearMainDicomTags(DatabaseManager& manager,
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309 int64_t internalId) ORTHANC_OVERRIDE;
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310
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311 // For unit testing only!
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312 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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313
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314 // For unit testing only!
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315 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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316
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317 // For unit testing only!
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318 virtual bool GetParentPublicId(std::string& target,
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319 DatabaseManager& manager,
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320 int64_t id);
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321
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322 // For unit tests only!
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323 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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324 DatabaseManager& manager,
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325 int64_t id);
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326
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327 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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328 // New primitive since Orthanc 1.5.2
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329 virtual void LookupResources(IDatabaseBackendOutput& output,
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330 DatabaseManager& manager,
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331 const DatabaseConstraints& lookup,
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332 OrthancPluginResourceType queryLevel,
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333 const std::set<std::string>& labels,
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334 LabelsConstraint labelsConstraint,
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335 uint32_t limit,
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336 bool requestSomeInstance) ORTHANC_OVERRIDE;
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337 #endif
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338
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339 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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340 // New primitive since Orthanc 1.5.2
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341 virtual void SetResourcesContent(
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342 DatabaseManager& manager,
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343 uint32_t countIdentifierTags,
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344 const OrthancPluginResourcesContentTags* identifierTags,
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345 uint32_t countMainDicomTags,
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346 const OrthancPluginResourcesContentTags* mainDicomTags,
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347 uint32_t countMetadata,
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348 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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349 #endif
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350
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351 // New primitive since Orthanc 1.5.2
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352 virtual void GetChildrenMetadata(std::list<std::string>& target,
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353 DatabaseManager& manager,
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354 int64_t resourceId,
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355 int32_t metadata) ORTHANC_OVERRIDE;
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356
225
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357 virtual void TagMostRecentPatient(DatabaseManager& manager,
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358 int64_t patient) ORTHANC_OVERRIDE;
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359
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360 // New primitive since Orthanc 1.5.4
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361 virtual bool LookupResourceAndParent(int64_t& id,
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362 OrthancPluginResourceType& type,
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363 std::string& parentPublicId,
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364 DatabaseManager& manager,
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365 const char* publicId) ORTHANC_OVERRIDE;
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366
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367 // New primitive since Orthanc 1.5.4
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368 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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369 DatabaseManager& manager,
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370 int64_t id) ORTHANC_OVERRIDE;
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371
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372 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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373 {
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374 // This extension is available in PostgreSQL and MySQL, but is
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375 // emulated by "CreateInstanceGeneric()" in SQLite
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376 return false;
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377 }
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378
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379 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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380 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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381 DatabaseManager& manager,
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382 const char* hashPatient,
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383 const char* hashStudy,
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384 const char* hashSeries,
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385 const char* hashInstance) ORTHANC_OVERRIDE
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386 {
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387 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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388 }
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389 #endif
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390
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391 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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392 // This function corresponds to
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393 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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394 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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395 DatabaseManager& manager,
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396 const char* hashPatient,
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397 const char* hashStudy,
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398 const char* hashSeries,
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399 const char* hashInstance);
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400 #endif
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401
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diff changeset
402 bool LookupGlobalIntegerProperty(int& target /*out*/,
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403 DatabaseManager& manager,
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404 const char* serverIdentifier,
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405 int32_t property);
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406
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407 void SetGlobalIntegerProperty(DatabaseManager& manager,
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408 const char* serverIdentifier,
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409 int32_t property,
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410 int value);
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411
396
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412 virtual void AddLabel(DatabaseManager& manager,
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413 int64_t resource,
391
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414 const std::string& label) ORTHANC_OVERRIDE;
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415
396
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416 virtual void RemoveLabel(DatabaseManager& manager,
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417 int64_t resource,
391
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418 const std::string& label) ORTHANC_OVERRIDE;
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419
396
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420 virtual void ListLabels(std::list<std::string>& target,
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421 DatabaseManager& manager,
391
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422 int64_t resource) ORTHANC_OVERRIDE;
402
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423
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424 virtual void ListAllLabels(std::list<std::string>& target,
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425 DatabaseManager& manager) ORTHANC_OVERRIDE;
391
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426
431
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427 virtual bool HasAtomicIncrementGlobalProperty() ORTHANC_OVERRIDE;
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428
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429 virtual int64_t IncrementGlobalProperty(DatabaseManager& manager,
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430 const char* serverIdentifier,
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431 int32_t property,
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432 int64_t increment) ORTHANC_OVERRIDE;
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433
436
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434 virtual bool HasUpdateAndGetStatistics() ORTHANC_OVERRIDE;
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435
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436 virtual void UpdateAndGetStatistics(DatabaseManager& manager,
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437 int64_t& patientsCount,
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438 int64_t& studiesCount,
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439 int64_t& seriesCount,
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440 int64_t& instancesCount,
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441 int64_t& compressedSize,
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442 int64_t& uncompressedSize) ORTHANC_OVERRIDE;
431
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443
447
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444 virtual bool HasMeasureLatency() ORTHANC_OVERRIDE;
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445
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446 virtual uint64_t MeasureLatency(DatabaseManager& manager) ORTHANC_OVERRIDE;
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447
565
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diff changeset
448 #if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 12, 5)
532
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449 // New primitive since Orthanc 1.12.5
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450 virtual bool HasExtendedChanges() const ORTHANC_OVERRIDE
501
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451 {
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452 return true;
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453 }
565
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diff changeset
454 #endif
501
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diff changeset
455
557
d8ee2f676a3c wip: started implementing Find in PostgreSQL
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parents: 553
diff changeset
456 #if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 12, 5)
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diff changeset
457 virtual bool HasFindSupport() const ORTHANC_OVERRIDE;
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diff changeset
458 #endif
d8ee2f676a3c wip: started implementing Find in PostgreSQL
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diff changeset
459
d8ee2f676a3c wip: started implementing Find in PostgreSQL
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parents: 553
diff changeset
460 #if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 12, 5)
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diff changeset
461 virtual void ExecuteFind(Orthanc::DatabasePluginMessages::TransactionResponse& response,
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diff changeset
462 DatabaseManager& manager,
d8ee2f676a3c wip: started implementing Find in PostgreSQL
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diff changeset
463 const Orthanc::DatabasePluginMessages::Find_Request& request) ORTHANC_OVERRIDE;
d8ee2f676a3c wip: started implementing Find in PostgreSQL
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parents: 553
diff changeset
464 #endif
d8ee2f676a3c wip: started implementing Find in PostgreSQL
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parents: 553
diff changeset
465
501
594859656a06 Added support for ExtendedApiV1: /changes
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parents: 460
diff changeset
466
234
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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diff changeset
467 /**
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diff changeset
468 * "maxDatabaseRetries" is to handle
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diff changeset
469 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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parents: 232
diff changeset
470 * collision multiple writers. "countConnections" and
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parents: 232
diff changeset
471 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
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parents: 232
diff changeset
472 **/
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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diff changeset
473 static void Register(IndexBackend* backend,
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diff changeset
474 size_t countConnections,
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diff changeset
475 unsigned int maxDatabaseRetries);
222
c8e06b41feec refactoring registration/finalization of index backend
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parents: 221
diff changeset
476
c8e06b41feec refactoring registration/finalization of index backend
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diff changeset
477 static void Finalize();
226
a4918d57435c DatabaseManager doesn't IDatabaseFactory anymore
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diff changeset
478
403
91124cc8a8c7 database plugins are informed about the identifier tags
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diff changeset
479 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend,
91124cc8a8c7 database plugins are informed about the identifier tags
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diff changeset
480 bool hasIdentifierTags,
91124cc8a8c7 database plugins are informed about the identifier tags
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diff changeset
481 const std::list<IdentifierTag>& identifierTags);
0
7cea966b6829 initial commit
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parents:
diff changeset
482 };
7cea966b6829 initial commit
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parents:
diff changeset
483 }