Mercurial > hg > orthanc-databases

annotate Framework/Plugins/IndexBackend.h @ 262:b0c65094b299

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adding support for revisions in attachments
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 20 Apr 2021 14:46:42 +0200
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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3236894320d6 upgrade to year 2021
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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24 #include "IDatabaseBackend.h"
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26 #include <OrthancException.h>
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28 #include <boost/thread/shared_mutex.hpp>
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31 namespace OrthancDatabases
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32 {
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33 /**
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34 * WARNING: This class can be invoked concurrently by several
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35 * threads if it is used from "DatabaseBackendAdapterV3".
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36 **/
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37 class IndexBackend : public IDatabaseBackend
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38 {
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39 private:
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40 class LookupFormatter;
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42 OrthancPluginContext* context_;
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43
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44 boost::shared_mutex outputFactoryMutex_;
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45 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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47 protected:
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48 void ClearDeletedFiles(DatabaseManager& manager);
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50 void ClearDeletedResources(DatabaseManager& manager);
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52 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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53 DatabaseManager& manager);
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55 void SignalDeletedResources(IDatabaseBackendOutput& output,
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56 DatabaseManager& manager);
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58 private:
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59 void ReadChangesInternal(IDatabaseBackendOutput& output,
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60 bool& done,
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61 DatabaseManager& manager,
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62 DatabaseManager::CachedStatement& statement,
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63 const Dictionary& args,
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64 uint32_t maxResults);
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65
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66 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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67 bool& done,
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68 DatabaseManager::CachedStatement& statement,
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69 const Dictionary& args,
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70 uint32_t maxResults);
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72 public:
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73 explicit IndexBackend(OrthancPluginContext* context);
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74
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75 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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76 {
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77 return context_;
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78 }
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80 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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82 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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84 virtual void AddAttachment(DatabaseManager& manager,
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85 int64_t id,
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86 const OrthancPluginAttachment& attachment,
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87 int64_t revision) ORTHANC_OVERRIDE;
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89 virtual void AttachChild(DatabaseManager& manager,
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90 int64_t parent,
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91 int64_t child) ORTHANC_OVERRIDE;
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93 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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95 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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97 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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98 DatabaseManager& manager,
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99 int64_t id,
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100 int32_t attachment) ORTHANC_OVERRIDE;
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101
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102 virtual void DeleteMetadata(DatabaseManager& manager,
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103 int64_t id,
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104 int32_t metadataType) ORTHANC_OVERRIDE;
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106 virtual void DeleteResource(IDatabaseBackendOutput& output,
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107 DatabaseManager& manager,
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108 int64_t id) ORTHANC_OVERRIDE;
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109
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110 virtual void GetAllInternalIds(std::list<int64_t>& target,
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111 DatabaseManager& manager,
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112 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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113
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114 virtual void GetAllPublicIds(std::list<std::string>& target,
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115 DatabaseManager& manager,
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116 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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118 virtual void GetAllPublicIds(std::list<std::string>& target,
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119 DatabaseManager& manager,
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120 OrthancPluginResourceType resourceType,
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121 uint64_t since,
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122 uint64_t limit) ORTHANC_OVERRIDE;
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123
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124 virtual void GetChanges(IDatabaseBackendOutput& output,
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125 bool& done /*out*/,
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126 DatabaseManager& manager,
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127 int64_t since,
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128 uint32_t maxResults) ORTHANC_OVERRIDE;
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129
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130 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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131 DatabaseManager& manager,
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132 int64_t id) ORTHANC_OVERRIDE;
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133
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134 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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135 DatabaseManager& manager,
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136 int64_t id) ORTHANC_OVERRIDE;
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137
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138 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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139 bool& done /*out*/,
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140 DatabaseManager& manager,
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141 int64_t since,
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142 uint32_t maxResults) ORTHANC_OVERRIDE;
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143
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144 virtual void GetLastChange(IDatabaseBackendOutput& output,
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145 DatabaseManager& manager) ORTHANC_OVERRIDE;
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146
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147 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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148 DatabaseManager& manager) ORTHANC_OVERRIDE;
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149
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150 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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151 DatabaseManager& manager,
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152 int64_t id) ORTHANC_OVERRIDE;
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153
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154 virtual std::string GetPublicId(DatabaseManager& manager,
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155 int64_t resourceId) ORTHANC_OVERRIDE;
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156
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157 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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158 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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159
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160 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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161 int64_t resourceId) ORTHANC_OVERRIDE;
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162
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163 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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164
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165 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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166
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167 virtual bool IsExistingResource(DatabaseManager& manager,
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168 int64_t internalId) ORTHANC_OVERRIDE;
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169
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170 virtual bool IsProtectedPatient(DatabaseManager& manager,
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171 int64_t internalId) ORTHANC_OVERRIDE;
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172
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173 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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174 DatabaseManager& manager,
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175 int64_t id) ORTHANC_OVERRIDE;
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176
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177 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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178 DatabaseManager& manager,
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179 int64_t id) ORTHANC_OVERRIDE;
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180
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181 virtual void LogChange(DatabaseManager& manager,
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182 int32_t changeType,
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183 int64_t resourceId,
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184 OrthancPluginResourceType resourceType,
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185 const char* date) ORTHANC_OVERRIDE;
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186
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187 virtual void LogExportedResource(DatabaseManager& manager,
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188 const OrthancPluginExportedResource& resource) ORTHANC_OVERRIDE;
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189
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190 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
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191 int64_t& revision /*out*/,
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192 DatabaseManager& manager,
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193 int64_t id,
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194 int32_t contentType) ORTHANC_OVERRIDE;
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195
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196 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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197 DatabaseManager& manager,
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198 const char* serverIdentifier,
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199 int32_t property) ORTHANC_OVERRIDE;
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200
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201 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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202 DatabaseManager& manager,
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203 OrthancPluginResourceType resourceType,
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204 uint16_t group,
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205 uint16_t element,
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206 OrthancPluginIdentifierConstraint constraint,
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207 const char* value) ORTHANC_OVERRIDE;
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208
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209 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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210 DatabaseManager& manager,
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211 OrthancPluginResourceType resourceType,
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212 uint16_t group,
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213 uint16_t element,
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214 const char* start,
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215 const char* end) ORTHANC_OVERRIDE;
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216
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217 virtual bool LookupMetadata(std::string& target /*out*/,
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218 int64_t& revision /*out*/,
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219 DatabaseManager& manager,
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220 int64_t id,
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221 int32_t metadataType) ORTHANC_OVERRIDE;
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222
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223 virtual bool LookupParent(int64_t& parentId /*out*/,
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224 DatabaseManager& manager,
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225 int64_t resourceId) ORTHANC_OVERRIDE;
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226
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227 virtual bool LookupResource(int64_t& id /*out*/,
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228 OrthancPluginResourceType& type /*out*/,
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229 DatabaseManager& manager,
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230 const char* publicId) ORTHANC_OVERRIDE;
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231
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232 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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233 DatabaseManager& manager) ORTHANC_OVERRIDE;
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234
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235 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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236 DatabaseManager& manager,
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237 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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238
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239 virtual void SetGlobalProperty(DatabaseManager& manager,
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240 const char* serverIdentifier,
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241 int32_t property,
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242 const char* utf8) ORTHANC_OVERRIDE;
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243
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244 virtual void SetMainDicomTag(DatabaseManager& manager,
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245 int64_t id,
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246 uint16_t group,
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247 uint16_t element,
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248 const char* value) ORTHANC_OVERRIDE;
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249
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250 virtual void SetIdentifierTag(DatabaseManager& manager,
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251 int64_t id,
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252 uint16_t group,
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253 uint16_t element,
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254 const char* value) ORTHANC_OVERRIDE;
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255
225
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256 virtual void SetMetadata(DatabaseManager& manager,
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257 int64_t id,
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258 int32_t metadataType,
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259 const char* value,
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260 int64_t revision) ORTHANC_OVERRIDE;
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261
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262 virtual void SetProtectedPatient(DatabaseManager& manager,
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263 int64_t internalId,
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264 bool isProtected) ORTHANC_OVERRIDE;
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265
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266 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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267
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268 virtual void UpgradeDatabase(DatabaseManager& manager,
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269 uint32_t targetVersion,
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270 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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271
225
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272 virtual void ClearMainDicomTags(DatabaseManager& manager,
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273 int64_t internalId) ORTHANC_OVERRIDE;
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274
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275 // For unit testing only!
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276 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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277
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278 // For unit testing only!
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279 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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280
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281 // For unit testing only!
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282 virtual bool GetParentPublicId(std::string& target,
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283 DatabaseManager& manager,
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284 int64_t id);
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285
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286 // For unit tests only!
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287 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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288 DatabaseManager& manager,
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289 int64_t id);
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290
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291 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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292 // New primitive since Orthanc 1.5.2
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293 virtual void LookupResources(IDatabaseBackendOutput& output,
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294 DatabaseManager& manager,
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295 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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296 OrthancPluginResourceType queryLevel,
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297 uint32_t limit,
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298 bool requestSomeInstance) ORTHANC_OVERRIDE;
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299 #endif
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300
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301 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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302 // New primitive since Orthanc 1.5.2
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303 virtual void SetResourcesContent(
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304 DatabaseManager& manager,
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305 uint32_t countIdentifierTags,
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306 const OrthancPluginResourcesContentTags* identifierTags,
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307 uint32_t countMainDicomTags,
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308 const OrthancPluginResourcesContentTags* mainDicomTags,
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309 uint32_t countMetadata,
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310 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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311 #endif
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312
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313 // New primitive since Orthanc 1.5.2
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314 virtual void GetChildrenMetadata(std::list<std::string>& target,
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315 DatabaseManager& manager,
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316 int64_t resourceId,
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317 int32_t metadata) ORTHANC_OVERRIDE;
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318
225
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319 virtual void TagMostRecentPatient(DatabaseManager& manager,
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320 int64_t patient) ORTHANC_OVERRIDE;
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321
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322 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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323 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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324 // New primitive since Orthanc 1.5.4
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325 virtual bool LookupResourceAndParent(int64_t& id,
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326 OrthancPluginResourceType& type,
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327 std::string& parentPublicId,
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328 DatabaseManager& manager,
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329 const char* publicId) ORTHANC_OVERRIDE;
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330 # endif
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331 #endif
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332
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333 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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334 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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335 // New primitive since Orthanc 1.5.4
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336 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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337 DatabaseManager& manager,
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338 int64_t id) ORTHANC_OVERRIDE;
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339 # endif
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340 #endif
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341
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342 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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343 {
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344 // This extension is available in PostgreSQL and MySQL, but is
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345 // emulated by "CreateInstanceGeneric()" in SQLite
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346 return false;
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347 }
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348
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349 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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350 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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351 DatabaseManager& manager,
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352 const char* hashPatient,
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353 const char* hashStudy,
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354 const char* hashSeries,
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355 const char* hashInstance) ORTHANC_OVERRIDE
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356 {
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357 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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358 }
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359 #endif
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360
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361 // This function corresponds to
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362 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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363 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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364 DatabaseManager& manager,
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365 const char* hashPatient,
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366 const char* hashStudy,
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367 const char* hashSeries,
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368 const char* hashInstance);
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369
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370 bool LookupGlobalIntegerProperty(int& target /*out*/,
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371 DatabaseManager& manager,
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372 const char* serverIdentifier,
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373 int32_t property);
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374
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375 void SetGlobalIntegerProperty(DatabaseManager& manager,
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376 const char* serverIdentifier,
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377 int32_t property,
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378 int value);
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379
234
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380 /**
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381 * "maxDatabaseRetries" is to handle
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382 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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383 * collision multiple writers. "countConnections" and
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384 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
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385 **/
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386 static void Register(IndexBackend* backend,
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387 size_t countConnections,
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388 unsigned int maxDatabaseRetries);
222
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389
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390 static void Finalize();
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391
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392 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend);
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393 };
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394 }