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annotate Framework/Plugins/IndexBackend.h @ 366:cd9521e04249 attach-custom-data

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DatabaseBackendAdapterV4: added support for customData + revision when not already done
author Alain Mazy <am@osimis.io>
date Thu, 15 Sep 2022 18:12:34 +0200
parents 6b18d3fbee82
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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3236894320d6 upgrade to year 2021
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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20
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21
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22 #pragma once
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24 #include "IDatabaseBackend.h"
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26 #include <OrthancException.h>
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28 #include <boost/thread/shared_mutex.hpp>
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31 namespace OrthancDatabases
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32 {
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33 /**
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34 * WARNING: This class can be invoked concurrently by several
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35 * threads if it is used from "DatabaseBackendAdapterV3".
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36 **/
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37 class IndexBackend : public IDatabaseBackend
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38 {
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39 private:
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40 class LookupFormatter;
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41
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42 OrthancPluginContext* context_;
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43
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44 boost::shared_mutex outputFactoryMutex_;
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45 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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46
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47 protected:
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48 void ClearDeletedFiles(DatabaseManager& manager);
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50 void ClearDeletedResources(DatabaseManager& manager);
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52 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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53 DatabaseManager& manager);
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55 void SignalDeletedResources(IDatabaseBackendOutput& output,
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56 DatabaseManager& manager);
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58 private:
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59 void ReadChangesInternal(IDatabaseBackendOutput& output,
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60 bool& done,
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61 DatabaseManager& manager,
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62 DatabaseManager::CachedStatement& statement,
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63 const Dictionary& args,
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64 uint32_t maxResults);
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65
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66 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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67 bool& done,
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68 DatabaseManager::CachedStatement& statement,
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69 const Dictionary& args,
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70 uint32_t maxResults);
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71
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72 public:
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73 explicit IndexBackend(OrthancPluginContext* context);
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74
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75 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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76 {
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77 return context_;
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78 }
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80 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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82 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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83
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84 virtual void AddAttachment(DatabaseManager& manager,
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85 int64_t id,
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86 const OrthancPluginAttachment& attachment,
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87 int64_t revision) ORTHANC_OVERRIDE;
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89 #if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 12, 0)
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91 virtual void AddAttachment2(DatabaseManager& manager,
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92 int64_t id,
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93 const OrthancPluginAttachment2& attachment,
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94 int64_t revision) ORTHANC_OVERRIDE;
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95
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96 #endif
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97
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98 virtual void AttachChild(DatabaseManager& manager,
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99 int64_t parent,
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100 int64_t child) ORTHANC_OVERRIDE;
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101
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102 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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104 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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106 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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107 DatabaseManager& manager,
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108 int64_t id,
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109 int32_t attachment) ORTHANC_OVERRIDE;
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111 virtual void DeleteMetadata(DatabaseManager& manager,
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112 int64_t id,
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113 int32_t metadataType) ORTHANC_OVERRIDE;
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115 virtual void DeleteResource(IDatabaseBackendOutput& output,
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116 DatabaseManager& manager,
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117 int64_t id) ORTHANC_OVERRIDE;
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118
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119 virtual void GetAllInternalIds(std::list<int64_t>& target,
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120 DatabaseManager& manager,
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121 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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122
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123 virtual void GetAllPublicIds(std::list<std::string>& target,
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124 DatabaseManager& manager,
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125 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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126
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127 virtual void GetAllPublicIds(std::list<std::string>& target,
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128 DatabaseManager& manager,
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129 OrthancPluginResourceType resourceType,
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130 uint64_t since,
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131 uint64_t limit) ORTHANC_OVERRIDE;
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132
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133 virtual void GetChanges(IDatabaseBackendOutput& output,
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134 bool& done /*out*/,
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135 DatabaseManager& manager,
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136 int64_t since,
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137 uint32_t maxResults) ORTHANC_OVERRIDE;
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138
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139 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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140 DatabaseManager& manager,
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141 int64_t id) ORTHANC_OVERRIDE;
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142
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143 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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144 DatabaseManager& manager,
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145 int64_t id) ORTHANC_OVERRIDE;
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146
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147 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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148 bool& done /*out*/,
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149 DatabaseManager& manager,
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150 int64_t since,
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151 uint32_t maxResults) ORTHANC_OVERRIDE;
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152
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153 virtual void GetLastChange(IDatabaseBackendOutput& output,
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154 DatabaseManager& manager) ORTHANC_OVERRIDE;
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155
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156 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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157 DatabaseManager& manager) ORTHANC_OVERRIDE;
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158
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159 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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160 DatabaseManager& manager,
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161 int64_t id) ORTHANC_OVERRIDE;
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162
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163 virtual std::string GetPublicId(DatabaseManager& manager,
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164 int64_t resourceId) ORTHANC_OVERRIDE;
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165
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166 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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167 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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168
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169 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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170 int64_t resourceId) ORTHANC_OVERRIDE;
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171
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172 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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173
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174 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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175
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176 virtual bool IsExistingResource(DatabaseManager& manager,
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177 int64_t internalId) ORTHANC_OVERRIDE;
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178
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179 virtual bool IsProtectedPatient(DatabaseManager& manager,
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180 int64_t internalId) ORTHANC_OVERRIDE;
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181
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182 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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183 DatabaseManager& manager,
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184 int64_t id) ORTHANC_OVERRIDE;
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185
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186 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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187 DatabaseManager& manager,
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188 int64_t id) ORTHANC_OVERRIDE;
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189
225
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190 virtual void LogChange(DatabaseManager& manager,
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191 int32_t changeType,
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192 int64_t resourceId,
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193 OrthancPluginResourceType resourceType,
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194 const char* date) ORTHANC_OVERRIDE;
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195
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196 virtual void LogExportedResource(DatabaseManager& manager,
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197 const OrthancPluginExportedResource& resource) ORTHANC_OVERRIDE;
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198
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199 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
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200 int64_t& revision /*out*/,
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201 DatabaseManager& manager,
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202 int64_t id,
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203 int32_t contentType) ORTHANC_OVERRIDE;
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204
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205 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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206 DatabaseManager& manager,
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207 const char* serverIdentifier,
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208 int32_t property) ORTHANC_OVERRIDE;
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209
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210 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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211 DatabaseManager& manager,
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212 OrthancPluginResourceType resourceType,
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213 uint16_t group,
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214 uint16_t element,
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215 OrthancPluginIdentifierConstraint constraint,
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216 const char* value) ORTHANC_OVERRIDE;
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217
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218 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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219 DatabaseManager& manager,
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220 OrthancPluginResourceType resourceType,
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221 uint16_t group,
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222 uint16_t element,
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223 const char* start,
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224 const char* end) ORTHANC_OVERRIDE;
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225
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226 virtual bool LookupMetadata(std::string& target /*out*/,
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227 int64_t& revision /*out*/,
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228 DatabaseManager& manager,
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229 int64_t id,
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230 int32_t metadataType) ORTHANC_OVERRIDE;
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231
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232 virtual bool LookupParent(int64_t& parentId /*out*/,
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233 DatabaseManager& manager,
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234 int64_t resourceId) ORTHANC_OVERRIDE;
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235
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236 virtual bool LookupResource(int64_t& id /*out*/,
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237 OrthancPluginResourceType& type /*out*/,
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238 DatabaseManager& manager,
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239 const char* publicId) ORTHANC_OVERRIDE;
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240
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241 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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242 DatabaseManager& manager) ORTHANC_OVERRIDE;
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243
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244 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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245 DatabaseManager& manager,
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246 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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247
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248 virtual void SetGlobalProperty(DatabaseManager& manager,
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249 const char* serverIdentifier,
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250 int32_t property,
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251 const char* utf8) ORTHANC_OVERRIDE;
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252
225
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253 virtual void SetMainDicomTag(DatabaseManager& manager,
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254 int64_t id,
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255 uint16_t group,
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256 uint16_t element,
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257 const char* value) ORTHANC_OVERRIDE;
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258
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259 virtual void SetIdentifierTag(DatabaseManager& manager,
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260 int64_t id,
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261 uint16_t group,
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262 uint16_t element,
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263 const char* value) ORTHANC_OVERRIDE;
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264
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265 virtual void SetMetadata(DatabaseManager& manager,
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266 int64_t id,
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267 int32_t metadataType,
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268 const char* value,
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269 int64_t revision) ORTHANC_OVERRIDE;
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270
225
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271 virtual void SetProtectedPatient(DatabaseManager& manager,
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272 int64_t internalId,
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273 bool isProtected) ORTHANC_OVERRIDE;
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274
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275 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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276
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277 virtual void UpgradeDatabase(DatabaseManager& manager,
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278 uint32_t targetVersion,
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279 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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280
225
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281 virtual void ClearMainDicomTags(DatabaseManager& manager,
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282 int64_t internalId) ORTHANC_OVERRIDE;
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283
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284 // For unit testing only!
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285 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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286
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287 // For unit testing only!
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288 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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289
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290 // For unit testing only!
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291 virtual bool GetParentPublicId(std::string& target,
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292 DatabaseManager& manager,
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293 int64_t id);
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294
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295 // For unit tests only!
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296 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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297 DatabaseManager& manager,
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298 int64_t id);
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299
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300 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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301 // New primitive since Orthanc 1.5.2
203
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302 virtual void LookupResources(IDatabaseBackendOutput& output,
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303 DatabaseManager& manager,
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304 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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305 OrthancPluginResourceType queryLevel,
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306 uint32_t limit,
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307 bool requestSomeInstance) ORTHANC_OVERRIDE;
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308 #endif
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309
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310 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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311 // New primitive since Orthanc 1.5.2
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312 virtual void SetResourcesContent(
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313 DatabaseManager& manager,
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314 uint32_t countIdentifierTags,
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315 const OrthancPluginResourcesContentTags* identifierTags,
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316 uint32_t countMainDicomTags,
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317 const OrthancPluginResourcesContentTags* mainDicomTags,
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318 uint32_t countMetadata,
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319 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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320 #endif
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321
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322 // New primitive since Orthanc 1.5.2
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323 virtual void GetChildrenMetadata(std::list<std::string>& target,
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324 DatabaseManager& manager,
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325 int64_t resourceId,
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326 int32_t metadata) ORTHANC_OVERRIDE;
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327
225
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328 virtual void TagMostRecentPatient(DatabaseManager& manager,
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329 int64_t patient) ORTHANC_OVERRIDE;
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330
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331 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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332 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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333 // New primitive since Orthanc 1.5.4
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334 virtual bool LookupResourceAndParent(int64_t& id,
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335 OrthancPluginResourceType& type,
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336 std::string& parentPublicId,
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337 DatabaseManager& manager,
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338 const char* publicId) ORTHANC_OVERRIDE;
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339 # endif
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340 #endif
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341
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342 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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343 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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344 // New primitive since Orthanc 1.5.4
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345 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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346 DatabaseManager& manager,
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347 int64_t id) ORTHANC_OVERRIDE;
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348 # endif
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349 #endif
202
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350
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351 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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352 {
218
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353 // This extension is available in PostgreSQL and MySQL, but is
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354 // emulated by "CreateInstanceGeneric()" in SQLite
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355 return false;
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356 }
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357
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358 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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359 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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360 DatabaseManager& manager,
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361 const char* hashPatient,
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362 const char* hashStudy,
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363 const char* hashSeries,
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364 const char* hashInstance) ORTHANC_OVERRIDE
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365 {
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366 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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367 }
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368 #endif
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369
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370 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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371 // This function corresponds to
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372 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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373 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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374 DatabaseManager& manager,
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375 const char* hashPatient,
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376 const char* hashStudy,
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377 const char* hashSeries,
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378 const char* hashInstance);
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379 #endif
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380
237
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381 bool LookupGlobalIntegerProperty(int& target /*out*/,
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382 DatabaseManager& manager,
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383 const char* serverIdentifier,
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384 int32_t property);
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385
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386 void SetGlobalIntegerProperty(DatabaseManager& manager,
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387 const char* serverIdentifier,
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388 int32_t property,
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389 int value);
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390
234
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391 /**
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392 * "maxDatabaseRetries" is to handle
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393 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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394 * collision multiple writers. "countConnections" and
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395 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
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396 **/
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397 static void Register(IndexBackend* backend,
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398 size_t countConnections,
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399 unsigned int maxDatabaseRetries);
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400
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401 static void Finalize();
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402
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403 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend);
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404 };
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405 }