Mercurial > hg > orthanc-databases

annotate Framework/Plugins/IndexBackend.h @ 447:5881e4af5799 pg-transactions

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measure DB latency
author Alain Mazy <am@osimis.io>
date Mon, 15 Jan 2024 18:27:20 +0100
parents f16faa1fdc46
children f0976163dbe1
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Affero General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Affero General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Affero General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #pragma once
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25 #include "IDatabaseBackend.h"
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27 #include <OrthancException.h>
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29 #include <boost/thread/shared_mutex.hpp>
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32 namespace OrthancDatabases
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33 {
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34 /**
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35 * WARNING: This class can be invoked concurrently by several
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36 * threads if it is used from "DatabaseBackendAdapterV3".
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37 **/
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38 class IndexBackend : public IDatabaseBackend
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39 {
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40 private:
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41 class LookupFormatter;
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42
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43 OrthancPluginContext* context_;
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44
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45 boost::shared_mutex outputFactoryMutex_;
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46 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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47
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48 protected:
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49 virtual void ClearDeletedFiles(DatabaseManager& manager);
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50
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51 virtual void ClearDeletedResources(DatabaseManager& manager);
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52
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53 virtual void ClearRemainingAncestor(DatabaseManager& manager);
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55 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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56 DatabaseManager& manager);
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58 void SignalDeletedResources(IDatabaseBackendOutput& output,
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59 DatabaseManager& manager);
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61 private:
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62 void ReadChangesInternal(IDatabaseBackendOutput& output,
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63 bool& done,
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64 DatabaseManager& manager,
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65 DatabaseManager::CachedStatement& statement,
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66 const Dictionary& args,
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67 uint32_t limit);
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69 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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70 bool& done,
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71 DatabaseManager::CachedStatement& statement,
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72 const Dictionary& args,
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73 uint32_t limit);
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75 public:
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76 explicit IndexBackend(OrthancPluginContext* context);
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77
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78 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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79 {
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80 return context_;
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81 }
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82
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83 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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85 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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86
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87 virtual void AddAttachment(DatabaseManager& manager,
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88 int64_t id,
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89 const OrthancPluginAttachment& attachment,
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90 int64_t revision) ORTHANC_OVERRIDE;
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92 virtual void AttachChild(DatabaseManager& manager,
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93 int64_t parent,
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94 int64_t child) ORTHANC_OVERRIDE;
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96 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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98 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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100 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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101 DatabaseManager& manager,
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102 int64_t id,
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103 int32_t attachment) ORTHANC_OVERRIDE;
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104
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105 virtual void DeleteMetadata(DatabaseManager& manager,
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106 int64_t id,
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107 int32_t metadataType) ORTHANC_OVERRIDE;
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108
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109 virtual void DeleteResource(IDatabaseBackendOutput& output,
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110 DatabaseManager& manager,
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111 int64_t id) ORTHANC_OVERRIDE;
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112
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113 virtual void GetAllInternalIds(std::list<int64_t>& target,
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114 DatabaseManager& manager,
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115 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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116
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117 virtual void GetAllPublicIds(std::list<std::string>& target,
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118 DatabaseManager& manager,
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119 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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121 virtual void GetAllPublicIds(std::list<std::string>& target,
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122 DatabaseManager& manager,
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123 OrthancPluginResourceType resourceType,
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124 int64_t since,
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125 uint32_t limit) ORTHANC_OVERRIDE;
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126
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127 virtual void GetChanges(IDatabaseBackendOutput& output,
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128 bool& done /*out*/,
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129 DatabaseManager& manager,
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130 int64_t since,
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131 uint32_t limit) ORTHANC_OVERRIDE;
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132
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133 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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134 DatabaseManager& manager,
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135 int64_t id) ORTHANC_OVERRIDE;
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136
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137 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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138 DatabaseManager& manager,
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139 int64_t id) ORTHANC_OVERRIDE;
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140
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141 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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142 bool& done /*out*/,
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143 DatabaseManager& manager,
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144 int64_t since,
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145 uint32_t limit) ORTHANC_OVERRIDE;
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146
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147 virtual void GetLastChange(IDatabaseBackendOutput& output,
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148 DatabaseManager& manager) ORTHANC_OVERRIDE;
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149
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150 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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151 DatabaseManager& manager) ORTHANC_OVERRIDE;
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152
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153 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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154 DatabaseManager& manager,
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155 int64_t id) ORTHANC_OVERRIDE;
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156
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157 virtual std::string GetPublicId(DatabaseManager& manager,
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158 int64_t resourceId) ORTHANC_OVERRIDE;
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159
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160 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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161 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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162
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163 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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164 int64_t resourceId) ORTHANC_OVERRIDE;
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165
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166 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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167
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168 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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169
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170 virtual bool IsExistingResource(DatabaseManager& manager,
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171 int64_t internalId) ORTHANC_OVERRIDE;
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172
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173 virtual bool IsProtectedPatient(DatabaseManager& manager,
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174 int64_t internalId) ORTHANC_OVERRIDE;
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175
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176 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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177 DatabaseManager& manager,
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178 int64_t id) ORTHANC_OVERRIDE;
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179
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180 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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181 DatabaseManager& manager,
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182 int64_t id) ORTHANC_OVERRIDE;
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183
225
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184 virtual void LogChange(DatabaseManager& manager,
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185 int32_t changeType,
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186 int64_t resourceId,
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187 OrthancPluginResourceType resourceType,
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188 const char* date) ORTHANC_OVERRIDE;
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189
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190 virtual void LogExportedResource(DatabaseManager& manager,
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191 OrthancPluginResourceType resourceType,
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192 const char* publicId,
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193 const char* modality,
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194 const char* date,
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195 const char* patientId,
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196 const char* studyInstanceUid,
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197 const char* seriesInstanceUid,
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198 const char* sopInstanceUid) ORTHANC_OVERRIDE;
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199
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200 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
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201 int64_t& revision /*out*/,
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202 DatabaseManager& manager,
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203 int64_t id,
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204 int32_t contentType) ORTHANC_OVERRIDE;
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205
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206 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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207 DatabaseManager& manager,
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208 const char* serverIdentifier,
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209 int32_t property) ORTHANC_OVERRIDE;
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210
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211 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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212 DatabaseManager& manager,
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213 OrthancPluginResourceType resourceType,
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214 uint16_t group,
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215 uint16_t element,
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216 OrthancPluginIdentifierConstraint constraint,
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217 const char* value) ORTHANC_OVERRIDE;
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218
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219 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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220 DatabaseManager& manager,
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221 OrthancPluginResourceType resourceType,
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222 uint16_t group,
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223 uint16_t element,
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224 const char* start,
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225 const char* end) ORTHANC_OVERRIDE;
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226
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227 virtual bool LookupMetadata(std::string& target /*out*/,
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228 int64_t& revision /*out*/,
225
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229 DatabaseManager& manager,
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230 int64_t id,
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231 int32_t metadataType) ORTHANC_OVERRIDE;
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232
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233 virtual bool LookupParent(int64_t& parentId /*out*/,
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234 DatabaseManager& manager,
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235 int64_t resourceId) ORTHANC_OVERRIDE;
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236
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237 virtual bool LookupResource(int64_t& id /*out*/,
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238 OrthancPluginResourceType& type /*out*/,
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239 DatabaseManager& manager,
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240 const char* publicId) ORTHANC_OVERRIDE;
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241
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242 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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243 DatabaseManager& manager) ORTHANC_OVERRIDE;
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244
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245 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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246 DatabaseManager& manager,
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247 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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248
225
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249 virtual void SetGlobalProperty(DatabaseManager& manager,
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250 const char* serverIdentifier,
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251 int32_t property,
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252 const char* utf8) ORTHANC_OVERRIDE;
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253
225
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254 virtual void SetMainDicomTag(DatabaseManager& manager,
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255 int64_t id,
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256 uint16_t group,
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257 uint16_t element,
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258 const char* value) ORTHANC_OVERRIDE;
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259
225
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260 virtual void SetIdentifierTag(DatabaseManager& manager,
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261 int64_t id,
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262 uint16_t group,
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263 uint16_t element,
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264 const char* value) ORTHANC_OVERRIDE;
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265
225
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266 virtual void SetMetadata(DatabaseManager& manager,
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267 int64_t id,
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268 int32_t metadataType,
256
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269 const char* value,
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270 int64_t revision) ORTHANC_OVERRIDE;
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271
225
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272 virtual void SetProtectedPatient(DatabaseManager& manager,
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273 int64_t internalId,
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274 bool isProtected) ORTHANC_OVERRIDE;
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275
225
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276 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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277
225
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278 virtual void UpgradeDatabase(DatabaseManager& manager,
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279 uint32_t targetVersion,
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280 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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281
225
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282 virtual void ClearMainDicomTags(DatabaseManager& manager,
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283 int64_t internalId) ORTHANC_OVERRIDE;
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284
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285 // For unit testing only!
225
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286 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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287
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288 // For unit testing only!
225
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289 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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290
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291 // For unit testing only!
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292 virtual bool GetParentPublicId(std::string& target,
225
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293 DatabaseManager& manager,
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294 int64_t id);
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295
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296 // For unit tests only!
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297 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
225
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298 DatabaseManager& manager,
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299 int64_t id);
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300
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301 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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302 // New primitive since Orthanc 1.5.2
203
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303 virtual void LookupResources(IDatabaseBackendOutput& output,
225
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304 DatabaseManager& manager,
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305 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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306 OrthancPluginResourceType queryLevel,
401
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307 const std::set<std::string>& labels,
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308 Orthanc::LabelsConstraint labelsConstraint,
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309 uint32_t limit,
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310 bool requestSomeInstance) ORTHANC_OVERRIDE;
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311 #endif
75
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312
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313 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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314 // New primitive since Orthanc 1.5.2
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315 virtual void SetResourcesContent(
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316 DatabaseManager& manager,
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317 uint32_t countIdentifierTags,
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318 const OrthancPluginResourcesContentTags* identifierTags,
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319 uint32_t countMainDicomTags,
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320 const OrthancPluginResourcesContentTags* mainDicomTags,
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321 uint32_t countMetadata,
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322 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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323 #endif
76
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324
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325 // New primitive since Orthanc 1.5.2
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326 virtual void GetChildrenMetadata(std::list<std::string>& target,
225
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327 DatabaseManager& manager,
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328 int64_t resourceId,
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329 int32_t metadata) ORTHANC_OVERRIDE;
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330
225
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331 virtual void TagMostRecentPatient(DatabaseManager& manager,
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332 int64_t patient) ORTHANC_OVERRIDE;
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333
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334 // New primitive since Orthanc 1.5.4
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335 virtual bool LookupResourceAndParent(int64_t& id,
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336 OrthancPluginResourceType& type,
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337 std::string& parentPublicId,
225
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338 DatabaseManager& manager,
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339 const char* publicId) ORTHANC_OVERRIDE;
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340
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341 // New primitive since Orthanc 1.5.4
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342 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
225
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343 DatabaseManager& manager,
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344 int64_t id) ORTHANC_OVERRIDE;
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345
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346 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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347 {
218
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348 // This extension is available in PostgreSQL and MySQL, but is
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349 // emulated by "CreateInstanceGeneric()" in SQLite
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350 return false;
202
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351 }
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352
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353 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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354 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
225
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355 DatabaseManager& manager,
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356 const char* hashPatient,
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357 const char* hashStudy,
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358 const char* hashSeries,
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359 const char* hashInstance) ORTHANC_OVERRIDE
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360 {
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361 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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362 }
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363 #endif
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364
271
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365 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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366 // This function corresponds to
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367 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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368 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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369 DatabaseManager& manager,
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370 const char* hashPatient,
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371 const char* hashStudy,
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372 const char* hashSeries,
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373 const char* hashInstance);
271
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374 #endif
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375
237
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376 bool LookupGlobalIntegerProperty(int& target /*out*/,
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377 DatabaseManager& manager,
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378 const char* serverIdentifier,
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379 int32_t property);
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380
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381 void SetGlobalIntegerProperty(DatabaseManager& manager,
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382 const char* serverIdentifier,
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383 int32_t property,
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384 int value);
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385
396
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386 virtual void AddLabel(DatabaseManager& manager,
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387 int64_t resource,
391
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388 const std::string& label) ORTHANC_OVERRIDE;
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389
396
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390 virtual void RemoveLabel(DatabaseManager& manager,
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391 int64_t resource,
391
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392 const std::string& label) ORTHANC_OVERRIDE;
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393
396
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394 virtual void ListLabels(std::list<std::string>& target,
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395 DatabaseManager& manager,
391
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396 int64_t resource) ORTHANC_OVERRIDE;
402
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397
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398 virtual void ListAllLabels(std::list<std::string>& target,
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399 DatabaseManager& manager) ORTHANC_OVERRIDE;
391
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400
431
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401 virtual bool HasAtomicIncrementGlobalProperty() ORTHANC_OVERRIDE;
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402
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403 virtual int64_t IncrementGlobalProperty(DatabaseManager& manager,
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404 const char* serverIdentifier,
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405 int32_t property,
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406 int64_t increment) ORTHANC_OVERRIDE;
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407
436
f16faa1fdc46 InsertOrUpdateMetadata function + UpdateAndGetStatistics
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408 virtual bool HasUpdateAndGetStatistics() ORTHANC_OVERRIDE;
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409
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410 virtual void UpdateAndGetStatistics(DatabaseManager& manager,
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411 int64_t& patientsCount,
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412 int64_t& studiesCount,
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413 int64_t& seriesCount,
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414 int64_t& instancesCount,
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415 int64_t& compressedSize,
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416 int64_t& uncompressedSize) ORTHANC_OVERRIDE;
431
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417
447
5881e4af5799 measure DB latency
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418 virtual bool HasMeasureLatency() ORTHANC_OVERRIDE;
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419
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420 virtual uint64_t MeasureLatency(DatabaseManager& manager) ORTHANC_OVERRIDE;
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421
234
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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422 /**
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423 * "maxDatabaseRetries" is to handle
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424 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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425 * collision multiple writers. "countConnections" and
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426 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
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427 **/
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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428 static void Register(IndexBackend* backend,
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429 size_t countConnections,
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parents: 232
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430 unsigned int maxDatabaseRetries);
222
c8e06b41feec refactoring registration/finalization of index backend
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431
c8e06b41feec refactoring registration/finalization of index backend
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432 static void Finalize();
226
a4918d57435c DatabaseManager doesn't IDatabaseFactory anymore
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parents: 225
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433
403
91124cc8a8c7 database plugins are informed about the identifier tags
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434 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend,
91124cc8a8c7 database plugins are informed about the identifier tags
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435 bool hasIdentifierTags,
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436 const std::list<IdentifierTag>& identifierTags);
0
7cea966b6829 initial commit
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parents:
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437 };
7cea966b6829 initial commit
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438 }