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annotate Framework/Plugins/IndexBackend.h @ 261:34e2b93a7ac1

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implementing interface for revisions in attachments
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 19 Apr 2021 18:47:50 +0200
parents e184dcadf163
children b0c65094b299
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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24 #include "IDatabaseBackend.h"
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26 #include <OrthancException.h>
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28 #include <boost/thread/shared_mutex.hpp>
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31 namespace OrthancDatabases
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32 {
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33 /**
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34 * WARNING: This class can be invoked concurrently by several
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35 * threads if it is used from "DatabaseBackendAdapterV3".
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36 **/
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37 class IndexBackend : public IDatabaseBackend
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38 {
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39 private:
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40 class LookupFormatter;
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41
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42 OrthancPluginContext* context_;
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43
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44 boost::shared_mutex outputFactoryMutex_;
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45 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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47 protected:
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48 static int64_t ReadInteger64(const DatabaseManager::StatementBase& statement,
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49 size_t field);
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51 static int32_t ReadInteger32(const DatabaseManager::StatementBase& statement,
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52 size_t field);
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54 static std::string ReadString(const DatabaseManager::StatementBase& statement,
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55 size_t field);
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56
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57 template <typename T>
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58 static void ReadListOfIntegers(std::list<T>& target,
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59 DatabaseManager::CachedStatement& statement,
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60 const Dictionary& args);
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61
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62 static void ReadListOfStrings(std::list<std::string>& target,
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63 DatabaseManager::CachedStatement& statement,
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64 const Dictionary& args);
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65
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66 void ClearDeletedFiles(DatabaseManager& manager);
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68 void ClearDeletedResources(DatabaseManager& manager);
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70 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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71 DatabaseManager& manager);
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73 void SignalDeletedResources(IDatabaseBackendOutput& output,
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74 DatabaseManager& manager);
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76 private:
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77 void ReadChangesInternal(IDatabaseBackendOutput& output,
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78 bool& done,
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79 DatabaseManager& manager,
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80 DatabaseManager::CachedStatement& statement,
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81 const Dictionary& args,
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82 uint32_t maxResults);
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84 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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85 bool& done,
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86 DatabaseManager::CachedStatement& statement,
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87 const Dictionary& args,
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88 uint32_t maxResults);
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89
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90 public:
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91 explicit IndexBackend(OrthancPluginContext* context);
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92
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93 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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94 {
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95 return context_;
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96 }
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98 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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100 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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101
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102 virtual void AddAttachment(DatabaseManager& manager,
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103 int64_t id,
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104 const OrthancPluginAttachment& attachment,
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105 int64_t revision) ORTHANC_OVERRIDE;
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106
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107 virtual void AttachChild(DatabaseManager& manager,
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108 int64_t parent,
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109 int64_t child) ORTHANC_OVERRIDE;
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111 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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113 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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115 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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116 DatabaseManager& manager,
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117 int64_t id,
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118 int32_t attachment) ORTHANC_OVERRIDE;
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119
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120 virtual void DeleteMetadata(DatabaseManager& manager,
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121 int64_t id,
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122 int32_t metadataType) ORTHANC_OVERRIDE;
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124 virtual void DeleteResource(IDatabaseBackendOutput& output,
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125 DatabaseManager& manager,
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126 int64_t id) ORTHANC_OVERRIDE;
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127
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128 virtual void GetAllInternalIds(std::list<int64_t>& target,
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129 DatabaseManager& manager,
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130 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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131
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132 virtual void GetAllPublicIds(std::list<std::string>& target,
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133 DatabaseManager& manager,
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134 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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136 virtual void GetAllPublicIds(std::list<std::string>& target,
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137 DatabaseManager& manager,
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138 OrthancPluginResourceType resourceType,
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139 uint64_t since,
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140 uint64_t limit) ORTHANC_OVERRIDE;
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141
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142 virtual void GetChanges(IDatabaseBackendOutput& output,
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143 bool& done /*out*/,
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144 DatabaseManager& manager,
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145 int64_t since,
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146 uint32_t maxResults) ORTHANC_OVERRIDE;
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147
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148 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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149 DatabaseManager& manager,
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150 int64_t id) ORTHANC_OVERRIDE;
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151
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152 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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153 DatabaseManager& manager,
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154 int64_t id) ORTHANC_OVERRIDE;
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155
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156 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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157 bool& done /*out*/,
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158 DatabaseManager& manager,
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159 int64_t since,
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160 uint32_t maxResults) ORTHANC_OVERRIDE;
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161
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162 virtual void GetLastChange(IDatabaseBackendOutput& output,
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163 DatabaseManager& manager) ORTHANC_OVERRIDE;
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164
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165 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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166 DatabaseManager& manager) ORTHANC_OVERRIDE;
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167
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168 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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169 DatabaseManager& manager,
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170 int64_t id) ORTHANC_OVERRIDE;
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171
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172 virtual std::string GetPublicId(DatabaseManager& manager,
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173 int64_t resourceId) ORTHANC_OVERRIDE;
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174
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175 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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176 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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177
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178 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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179 int64_t resourceId) ORTHANC_OVERRIDE;
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180
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181 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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182
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183 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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184
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185 virtual bool IsExistingResource(DatabaseManager& manager,
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186 int64_t internalId) ORTHANC_OVERRIDE;
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187
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188 virtual bool IsProtectedPatient(DatabaseManager& manager,
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189 int64_t internalId) ORTHANC_OVERRIDE;
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190
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191 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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192 DatabaseManager& manager,
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193 int64_t id) ORTHANC_OVERRIDE;
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194
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195 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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196 DatabaseManager& manager,
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197 int64_t id) ORTHANC_OVERRIDE;
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198
225
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199 virtual void LogChange(DatabaseManager& manager,
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200 int32_t changeType,
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201 int64_t resourceId,
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202 OrthancPluginResourceType resourceType,
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203 const char* date) ORTHANC_OVERRIDE;
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204
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205 virtual void LogExportedResource(DatabaseManager& manager,
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206 const OrthancPluginExportedResource& resource) ORTHANC_OVERRIDE;
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207
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208 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
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209 int64_t& revision /*out*/,
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210 DatabaseManager& manager,
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211 int64_t id,
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212 int32_t contentType) ORTHANC_OVERRIDE;
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213
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214 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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215 DatabaseManager& manager,
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216 const char* serverIdentifier,
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217 int32_t property) ORTHANC_OVERRIDE;
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218
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219 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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220 DatabaseManager& manager,
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221 OrthancPluginResourceType resourceType,
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222 uint16_t group,
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223 uint16_t element,
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224 OrthancPluginIdentifierConstraint constraint,
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225 const char* value) ORTHANC_OVERRIDE;
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226
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227 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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228 DatabaseManager& manager,
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229 OrthancPluginResourceType resourceType,
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230 uint16_t group,
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231 uint16_t element,
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232 const char* start,
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233 const char* end) ORTHANC_OVERRIDE;
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234
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235 virtual bool LookupMetadata(std::string& target /*out*/,
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236 int64_t& revision /*out*/,
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237 DatabaseManager& manager,
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238 int64_t id,
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239 int32_t metadataType) ORTHANC_OVERRIDE;
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240
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241 virtual bool LookupParent(int64_t& parentId /*out*/,
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242 DatabaseManager& manager,
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243 int64_t resourceId) ORTHANC_OVERRIDE;
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244
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245 virtual bool LookupResource(int64_t& id /*out*/,
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246 OrthancPluginResourceType& type /*out*/,
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247 DatabaseManager& manager,
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248 const char* publicId) ORTHANC_OVERRIDE;
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249
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250 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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251 DatabaseManager& manager) ORTHANC_OVERRIDE;
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252
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253 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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254 DatabaseManager& manager,
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255 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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256
225
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257 virtual void SetGlobalProperty(DatabaseManager& manager,
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258 const char* serverIdentifier,
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259 int32_t property,
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260 const char* utf8) ORTHANC_OVERRIDE;
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261
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262 virtual void SetMainDicomTag(DatabaseManager& manager,
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263 int64_t id,
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264 uint16_t group,
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265 uint16_t element,
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266 const char* value) ORTHANC_OVERRIDE;
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267
225
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268 virtual void SetIdentifierTag(DatabaseManager& manager,
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269 int64_t id,
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270 uint16_t group,
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271 uint16_t element,
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272 const char* value) ORTHANC_OVERRIDE;
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273
225
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274 virtual void SetMetadata(DatabaseManager& manager,
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275 int64_t id,
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276 int32_t metadataType,
256
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277 const char* value,
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278 int64_t revision) ORTHANC_OVERRIDE;
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279
225
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280 virtual void SetProtectedPatient(DatabaseManager& manager,
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281 int64_t internalId,
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282 bool isProtected) ORTHANC_OVERRIDE;
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283
225
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284 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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285
225
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286 virtual void UpgradeDatabase(DatabaseManager& manager,
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287 uint32_t targetVersion,
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288 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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289
225
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290 virtual void ClearMainDicomTags(DatabaseManager& manager,
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291 int64_t internalId) ORTHANC_OVERRIDE;
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292
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293 // For unit testing only!
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294 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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295
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296 // For unit testing only!
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297 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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298
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299 // For unit testing only!
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300 virtual bool GetParentPublicId(std::string& target,
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301 DatabaseManager& manager,
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302 int64_t id);
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303
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304 // For unit tests only!
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305 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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306 DatabaseManager& manager,
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307 int64_t id);
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308
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309 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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310 // New primitive since Orthanc 1.5.2
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311 virtual void LookupResources(IDatabaseBackendOutput& output,
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312 DatabaseManager& manager,
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313 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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314 OrthancPluginResourceType queryLevel,
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315 uint32_t limit,
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316 bool requestSomeInstance) ORTHANC_OVERRIDE;
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317 #endif
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318
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319 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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320 // New primitive since Orthanc 1.5.2
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321 virtual void SetResourcesContent(
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322 DatabaseManager& manager,
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323 uint32_t countIdentifierTags,
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324 const OrthancPluginResourcesContentTags* identifierTags,
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325 uint32_t countMainDicomTags,
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326 const OrthancPluginResourcesContentTags* mainDicomTags,
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327 uint32_t countMetadata,
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328 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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329 #endif
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330
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331 // New primitive since Orthanc 1.5.2
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332 virtual void GetChildrenMetadata(std::list<std::string>& target,
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333 DatabaseManager& manager,
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334 int64_t resourceId,
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335 int32_t metadata) ORTHANC_OVERRIDE;
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336
225
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337 virtual void TagMostRecentPatient(DatabaseManager& manager,
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338 int64_t patient) ORTHANC_OVERRIDE;
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339
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340 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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341 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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342 // New primitive since Orthanc 1.5.4
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343 virtual bool LookupResourceAndParent(int64_t& id,
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344 OrthancPluginResourceType& type,
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345 std::string& parentPublicId,
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346 DatabaseManager& manager,
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347 const char* publicId) ORTHANC_OVERRIDE;
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348 # endif
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349 #endif
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350
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351 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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352 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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353 // New primitive since Orthanc 1.5.4
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354 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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355 DatabaseManager& manager,
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356 int64_t id) ORTHANC_OVERRIDE;
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357 # endif
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358 #endif
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359
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360 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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361 {
218
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362 // This extension is available in PostgreSQL and MySQL, but is
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363 // emulated by "CreateInstanceGeneric()" in SQLite
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364 return false;
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365 }
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366
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367 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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368 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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369 DatabaseManager& manager,
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370 const char* hashPatient,
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371 const char* hashStudy,
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372 const char* hashSeries,
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373 const char* hashInstance) ORTHANC_OVERRIDE
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374 {
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375 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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376 }
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377 #endif
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378
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379 // This function corresponds to
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380 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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381 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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382 DatabaseManager& manager,
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383 const char* hashPatient,
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384 const char* hashStudy,
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385 const char* hashSeries,
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386 const char* hashInstance);
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387
237
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388 bool LookupGlobalIntegerProperty(int& target /*out*/,
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389 DatabaseManager& manager,
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390 const char* serverIdentifier,
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391 int32_t property);
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392
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393 void SetGlobalIntegerProperty(DatabaseManager& manager,
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394 const char* serverIdentifier,
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395 int32_t property,
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396 int value);
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397
234
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398 /**
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399 * "maxDatabaseRetries" is to handle
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400 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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401 * collision multiple writers. "countConnections" and
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402 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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403 **/
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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404 static void Register(IndexBackend* backend,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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405 size_t countConnections,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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406 unsigned int maxDatabaseRetries);
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407
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408 static void Finalize();
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409
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410 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend);
0
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411 };
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412 }