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annotate Framework/Plugins/IndexBackend.h @ 256:e184dcadf163

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 16 Apr 2021 17:13:33 +0200
parents 35598014f140
children 34e2b93a7ac1
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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3236894320d6 upgrade to year 2021
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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20
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21
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22 #pragma once
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24 #include "IDatabaseBackend.h"
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26 #include <OrthancException.h>
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28 #include <boost/thread/shared_mutex.hpp>
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31 namespace OrthancDatabases
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32 {
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33 /**
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34 * WARNING: This class can be invoked concurrently by several
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35 * threads if it is used from "DatabaseBackendAdapterV3".
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36 **/
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37 class IndexBackend : public IDatabaseBackend
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38 {
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39 private:
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40 class LookupFormatter;
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41
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42 OrthancPluginContext* context_;
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43
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44 boost::shared_mutex outputFactoryMutex_;
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45 std::unique_ptr<IDatabaseBackendOutput::IFactory> outputFactory_;
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46
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47 protected:
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48 static int64_t ReadInteger64(const DatabaseManager::StatementBase& statement,
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49 size_t field);
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51 static int32_t ReadInteger32(const DatabaseManager::StatementBase& statement,
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52 size_t field);
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54 static std::string ReadString(const DatabaseManager::StatementBase& statement,
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55 size_t field);
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56
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57 template <typename T>
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58 static void ReadListOfIntegers(std::list<T>& target,
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59 DatabaseManager::CachedStatement& statement,
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60 const Dictionary& args);
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61
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62 static void ReadListOfStrings(std::list<std::string>& target,
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63 DatabaseManager::CachedStatement& statement,
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64 const Dictionary& args);
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65
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66 void ClearDeletedFiles(DatabaseManager& manager);
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68 void ClearDeletedResources(DatabaseManager& manager);
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70 void SignalDeletedFiles(IDatabaseBackendOutput& output,
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71 DatabaseManager& manager);
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73 void SignalDeletedResources(IDatabaseBackendOutput& output,
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74 DatabaseManager& manager);
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76 private:
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77 void ReadChangesInternal(IDatabaseBackendOutput& output,
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78 bool& done,
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79 DatabaseManager& manager,
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80 DatabaseManager::CachedStatement& statement,
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81 const Dictionary& args,
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82 uint32_t maxResults);
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83
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84 void ReadExportedResourcesInternal(IDatabaseBackendOutput& output,
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85 bool& done,
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86 DatabaseManager::CachedStatement& statement,
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87 const Dictionary& args,
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88 uint32_t maxResults);
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89
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90 public:
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91 explicit IndexBackend(OrthancPluginContext* context);
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92
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93 virtual OrthancPluginContext* GetContext() ORTHANC_OVERRIDE
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94 {
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95 return context_;
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96 }
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98 virtual void SetOutputFactory(IDatabaseBackendOutput::IFactory* factory) ORTHANC_OVERRIDE;
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100 virtual IDatabaseBackendOutput* CreateOutput() ORTHANC_OVERRIDE;
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101
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102 virtual void AddAttachment(DatabaseManager& manager,
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103 int64_t id,
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104 const OrthancPluginAttachment& attachment) ORTHANC_OVERRIDE;
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105
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106 virtual void AttachChild(DatabaseManager& manager,
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107 int64_t parent,
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108 int64_t child) ORTHANC_OVERRIDE;
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109
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110 virtual void ClearChanges(DatabaseManager& manager) ORTHANC_OVERRIDE;
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112 virtual void ClearExportedResources(DatabaseManager& manager) ORTHANC_OVERRIDE;
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114 virtual void DeleteAttachment(IDatabaseBackendOutput& output,
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115 DatabaseManager& manager,
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116 int64_t id,
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117 int32_t attachment) ORTHANC_OVERRIDE;
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118
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119 virtual void DeleteMetadata(DatabaseManager& manager,
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120 int64_t id,
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121 int32_t metadataType) ORTHANC_OVERRIDE;
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122
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123 virtual void DeleteResource(IDatabaseBackendOutput& output,
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124 DatabaseManager& manager,
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125 int64_t id) ORTHANC_OVERRIDE;
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126
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127 virtual void GetAllInternalIds(std::list<int64_t>& target,
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128 DatabaseManager& manager,
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129 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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130
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131 virtual void GetAllPublicIds(std::list<std::string>& target,
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132 DatabaseManager& manager,
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133 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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134
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135 virtual void GetAllPublicIds(std::list<std::string>& target,
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136 DatabaseManager& manager,
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137 OrthancPluginResourceType resourceType,
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138 uint64_t since,
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139 uint64_t limit) ORTHANC_OVERRIDE;
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140
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141 virtual void GetChanges(IDatabaseBackendOutput& output,
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142 bool& done /*out*/,
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143 DatabaseManager& manager,
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144 int64_t since,
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145 uint32_t maxResults) ORTHANC_OVERRIDE;
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146
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147 virtual void GetChildrenInternalId(std::list<int64_t>& target /*out*/,
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148 DatabaseManager& manager,
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149 int64_t id) ORTHANC_OVERRIDE;
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150
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151 virtual void GetChildrenPublicId(std::list<std::string>& target /*out*/,
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152 DatabaseManager& manager,
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153 int64_t id) ORTHANC_OVERRIDE;
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154
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155 virtual void GetExportedResources(IDatabaseBackendOutput& output,
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156 bool& done /*out*/,
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157 DatabaseManager& manager,
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158 int64_t since,
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159 uint32_t maxResults) ORTHANC_OVERRIDE;
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160
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161 virtual void GetLastChange(IDatabaseBackendOutput& output,
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162 DatabaseManager& manager) ORTHANC_OVERRIDE;
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163
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164 virtual void GetLastExportedResource(IDatabaseBackendOutput& output,
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165 DatabaseManager& manager) ORTHANC_OVERRIDE;
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166
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167 virtual void GetMainDicomTags(IDatabaseBackendOutput& output,
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168 DatabaseManager& manager,
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169 int64_t id) ORTHANC_OVERRIDE;
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170
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171 virtual std::string GetPublicId(DatabaseManager& manager,
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172 int64_t resourceId) ORTHANC_OVERRIDE;
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173
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174 virtual uint64_t GetResourcesCount(DatabaseManager& manager,
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175 OrthancPluginResourceType resourceType) ORTHANC_OVERRIDE;
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176
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177 virtual OrthancPluginResourceType GetResourceType(DatabaseManager& manager,
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178 int64_t resourceId) ORTHANC_OVERRIDE;
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179
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180 virtual uint64_t GetTotalCompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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181
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182 virtual uint64_t GetTotalUncompressedSize(DatabaseManager& manager) ORTHANC_OVERRIDE;
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183
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184 virtual bool IsExistingResource(DatabaseManager& manager,
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185 int64_t internalId) ORTHANC_OVERRIDE;
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186
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187 virtual bool IsProtectedPatient(DatabaseManager& manager,
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188 int64_t internalId) ORTHANC_OVERRIDE;
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189
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190 virtual void ListAvailableMetadata(std::list<int32_t>& target /*out*/,
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191 DatabaseManager& manager,
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192 int64_t id) ORTHANC_OVERRIDE;
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193
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194 virtual void ListAvailableAttachments(std::list<int32_t>& target /*out*/,
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195 DatabaseManager& manager,
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196 int64_t id) ORTHANC_OVERRIDE;
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197
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198 virtual void LogChange(DatabaseManager& manager,
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199 int32_t changeType,
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200 int64_t resourceId,
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201 OrthancPluginResourceType resourceType,
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202 const char* date) ORTHANC_OVERRIDE;
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203
225
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204 virtual void LogExportedResource(DatabaseManager& manager,
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205 const OrthancPluginExportedResource& resource) ORTHANC_OVERRIDE;
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206
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207 virtual bool LookupAttachment(IDatabaseBackendOutput& output,
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208 DatabaseManager& manager,
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209 int64_t id,
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210 int32_t contentType) ORTHANC_OVERRIDE;
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211
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212 virtual bool LookupGlobalProperty(std::string& target /*out*/,
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213 DatabaseManager& manager,
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214 const char* serverIdentifier,
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215 int32_t property) ORTHANC_OVERRIDE;
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216
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217 virtual void LookupIdentifier(std::list<int64_t>& target /*out*/,
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218 DatabaseManager& manager,
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219 OrthancPluginResourceType resourceType,
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220 uint16_t group,
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221 uint16_t element,
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222 OrthancPluginIdentifierConstraint constraint,
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223 const char* value) ORTHANC_OVERRIDE;
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224
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225 virtual void LookupIdentifierRange(std::list<int64_t>& target /*out*/,
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226 DatabaseManager& manager,
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227 OrthancPluginResourceType resourceType,
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228 uint16_t group,
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229 uint16_t element,
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230 const char* start,
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231 const char* end) ORTHANC_OVERRIDE;
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232
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233 virtual bool LookupMetadata(std::string& target /*out*/,
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234 int64_t& revision /*out*/,
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235 DatabaseManager& manager,
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236 int64_t id,
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237 int32_t metadataType) ORTHANC_OVERRIDE;
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238
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239 virtual bool LookupParent(int64_t& parentId /*out*/,
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240 DatabaseManager& manager,
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241 int64_t resourceId) ORTHANC_OVERRIDE;
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242
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243 virtual bool LookupResource(int64_t& id /*out*/,
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244 OrthancPluginResourceType& type /*out*/,
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245 DatabaseManager& manager,
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246 const char* publicId) ORTHANC_OVERRIDE;
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247
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248 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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249 DatabaseManager& manager) ORTHANC_OVERRIDE;
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250
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251 virtual bool SelectPatientToRecycle(int64_t& internalId /*out*/,
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252 DatabaseManager& manager,
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253 int64_t patientIdToAvoid) ORTHANC_OVERRIDE;
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254
225
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255 virtual void SetGlobalProperty(DatabaseManager& manager,
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256 const char* serverIdentifier,
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257 int32_t property,
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258 const char* utf8) ORTHANC_OVERRIDE;
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259
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260 virtual void SetMainDicomTag(DatabaseManager& manager,
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261 int64_t id,
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262 uint16_t group,
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263 uint16_t element,
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264 const char* value) ORTHANC_OVERRIDE;
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265
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266 virtual void SetIdentifierTag(DatabaseManager& manager,
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267 int64_t id,
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268 uint16_t group,
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269 uint16_t element,
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270 const char* value) ORTHANC_OVERRIDE;
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271
225
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272 virtual void SetMetadata(DatabaseManager& manager,
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273 int64_t id,
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274 int32_t metadataType,
256
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275 const char* value,
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276 int64_t revision) ORTHANC_OVERRIDE;
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277
225
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278 virtual void SetProtectedPatient(DatabaseManager& manager,
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279 int64_t internalId,
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280 bool isProtected) ORTHANC_OVERRIDE;
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281
225
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282 virtual uint32_t GetDatabaseVersion(DatabaseManager& manager) ORTHANC_OVERRIDE;
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283
225
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284 virtual void UpgradeDatabase(DatabaseManager& manager,
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285 uint32_t targetVersion,
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286 OrthancPluginStorageArea* storageArea) ORTHANC_OVERRIDE;
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287
225
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288 virtual void ClearMainDicomTags(DatabaseManager& manager,
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289 int64_t internalId) ORTHANC_OVERRIDE;
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290
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291 // For unit testing only!
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292 virtual uint64_t GetAllResourcesCount(DatabaseManager& manager);
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293
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294 // For unit testing only!
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295 virtual uint64_t GetUnprotectedPatientsCount(DatabaseManager& manager);
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296
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297 // For unit testing only!
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298 virtual bool GetParentPublicId(std::string& target,
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299 DatabaseManager& manager,
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300 int64_t id);
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301
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302 // For unit tests only!
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303 virtual void GetChildren(std::list<std::string>& childrenPublicIds,
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304 DatabaseManager& manager,
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305 int64_t id);
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306
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307 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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308 // New primitive since Orthanc 1.5.2
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309 virtual void LookupResources(IDatabaseBackendOutput& output,
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310 DatabaseManager& manager,
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311 const std::vector<Orthanc::DatabaseConstraint>& lookup,
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312 OrthancPluginResourceType queryLevel,
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313 uint32_t limit,
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314 bool requestSomeInstance) ORTHANC_OVERRIDE;
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315 #endif
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316
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317 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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318 // New primitive since Orthanc 1.5.2
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319 virtual void SetResourcesContent(
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320 DatabaseManager& manager,
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321 uint32_t countIdentifierTags,
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322 const OrthancPluginResourcesContentTags* identifierTags,
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323 uint32_t countMainDicomTags,
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324 const OrthancPluginResourcesContentTags* mainDicomTags,
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325 uint32_t countMetadata,
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326 const OrthancPluginResourcesContentMetadata* metadata) ORTHANC_OVERRIDE;
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327 #endif
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328
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329 // New primitive since Orthanc 1.5.2
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330 virtual void GetChildrenMetadata(std::list<std::string>& target,
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331 DatabaseManager& manager,
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332 int64_t resourceId,
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333 int32_t metadata) ORTHANC_OVERRIDE;
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334
225
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335 virtual void TagMostRecentPatient(DatabaseManager& manager,
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336 int64_t patient) ORTHANC_OVERRIDE;
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337
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338 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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339 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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340 // New primitive since Orthanc 1.5.4
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341 virtual bool LookupResourceAndParent(int64_t& id,
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342 OrthancPluginResourceType& type,
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343 std::string& parentPublicId,
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344 DatabaseManager& manager,
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345 const char* publicId) ORTHANC_OVERRIDE;
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346 # endif
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347 #endif
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348
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349 #if defined(ORTHANC_PLUGINS_VERSION_IS_ABOVE) // Macro introduced in 1.3.1
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350 # if ORTHANC_PLUGINS_VERSION_IS_ABOVE(1, 5, 4)
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351 // New primitive since Orthanc 1.5.4
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352 virtual void GetAllMetadata(std::map<int32_t, std::string>& result,
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353 DatabaseManager& manager,
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354 int64_t id) ORTHANC_OVERRIDE;
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355 # endif
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356 #endif
202
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357
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358 virtual bool HasCreateInstance() const ORTHANC_OVERRIDE
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359 {
218
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360 // This extension is available in PostgreSQL and MySQL, but is
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361 // emulated by "CreateInstanceGeneric()" in SQLite
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362 return false;
202
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363 }
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364
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365 #if ORTHANC_PLUGINS_HAS_DATABASE_CONSTRAINT == 1
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366 virtual void CreateInstance(OrthancPluginCreateInstanceResult& result,
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367 DatabaseManager& manager,
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368 const char* hashPatient,
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369 const char* hashStudy,
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370 const char* hashSeries,
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371 const char* hashInstance) ORTHANC_OVERRIDE
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372 {
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373 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
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374 }
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375 #endif
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376
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377 // This function corresponds to
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378 // "Orthanc::Compatibility::ICreateInstance::Apply()"
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379 void CreateInstanceGeneric(OrthancPluginCreateInstanceResult& result,
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380 DatabaseManager& manager,
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381 const char* hashPatient,
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382 const char* hashStudy,
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383 const char* hashSeries,
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384 const char* hashInstance);
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385
237
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386 bool LookupGlobalIntegerProperty(int& target /*out*/,
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387 DatabaseManager& manager,
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388 const char* serverIdentifier,
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389 int32_t property);
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390
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391 void SetGlobalIntegerProperty(DatabaseManager& manager,
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392 const char* serverIdentifier,
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393 int32_t property,
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394 int value);
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395
234
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396 /**
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397 * "maxDatabaseRetries" is to handle
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398 * "OrthancPluginErrorCode_DatabaseCannotSerialize" if there is a
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399 * collision multiple writers. "countConnections" and
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400 * "maxDatabaseRetries" are only used if Orthanc >= 1.9.2.
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401 **/
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
Sebastien Jodogne <s.jodogne@gmail.com>
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402 static void Register(IndexBackend* backend,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
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403 size_t countConnections,
d1b124d116c1 PostgreSQL index plugin handles retries for collisions between multiple writers
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parents: 232
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404 unsigned int maxDatabaseRetries);
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405
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406 static void Finalize();
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407
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408 static DatabaseManager* CreateSingleDatabaseManager(IDatabaseBackend& backend);
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409 };
7cea966b6829 initial commit
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410 }