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annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h @ 5853:4d932683049d get-scu tip

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very first implementation of C-Get SCU
author Alain Mazy <am@orthanc.team>
date Tue, 29 Oct 2024 17:25:49 +0100
parents f7adfb22e20e
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU Lesser General Public License
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11 * as published by the Free Software Foundation, either version 3 of
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12 * the License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * Lesser General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU Lesser General Public
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20 * License along with this program. If not, see
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21 * <http://www.gnu.org/licenses/>.
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22 **/
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25 #pragma once
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26
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27 #include "ITagVisitor.h"
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28 #include "../DicomFormat/DicomElement.h"
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29 #include "../DicomFormat/DicomMap.h"
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30 #include "../DicomFormat/DicomPath.h"
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32 #include <dcmtk/dcmdata/dcdatset.h>
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33 #include <dcmtk/dcmdata/dcmetinf.h>
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34 #include <dcmtk/dcmdata/dcpixseq.h>
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35 #include <dcmtk/dcmdata/dcfilefo.h>
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36 #include <json/value.h>
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37
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38 #if ORTHANC_ENABLE_DCMTK != 1
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39 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1
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40 #endif
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41
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42 #if ORTHANC_BUILD_UNIT_TESTS == 1
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43 # include <gtest/gtest_prod.h>
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44 #endif
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45
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46 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG)
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47 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined
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48 #endif
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49
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50 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS)
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51 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined
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52 #endif
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53
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54
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55 namespace Orthanc
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56 {
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57 class ORTHANC_PUBLIC FromDcmtkBridge : public boost::noncopyable
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58 {
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59 #if ORTHANC_BUILD_UNIT_TESTS == 1
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60 FRIEND_TEST(FromDcmtkBridge, FromJson);
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61 #endif
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62
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63 friend class ParsedDicomFile;
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64
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65 public:
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66 // New in Orthanc 1.9.4
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67 class ORTHANC_PUBLIC IDicomPathVisitor : public boost::noncopyable
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68 {
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69 private:
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70 static void ApplyInternal(FromDcmtkBridge::IDicomPathVisitor& visitor,
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71 DcmItem& item,
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72 const DicomPath& pattern,
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73 const DicomPath& actualPath);
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75 public:
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76 virtual ~IDicomPathVisitor()
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77 {
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78 }
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79
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80 virtual void Visit(DcmItem& item,
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81 const DicomPath& path) = 0;
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83 static void Apply(IDicomPathVisitor& visitor,
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84 DcmDataset& dataset,
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85 const DicomPath& path);
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86 };
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88
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89 private:
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90 FromDcmtkBridge(); // Pure static class
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91
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92 static void DatasetToJson(Json::Value& parent,
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93 DcmItem& item,
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94 DicomToJsonFormat format,
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95 DicomToJsonFlags flags,
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96 unsigned int maxStringLength,
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97 Encoding encoding,
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98 bool hasCodeExtensions,
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99 const std::set<DicomTag>& ignoreTagLength,
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100 unsigned int depth);
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101
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102 static void ElementToJson(Json::Value& parent,
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103 DcmElement& element,
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104 DicomToJsonFormat format,
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105 DicomToJsonFlags flags,
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106 unsigned int maxStringLength,
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107 Encoding dicomEncoding,
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108 bool hasCodeExtensions,
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109 const std::set<DicomTag>& ignoreTagLength,
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110 unsigned int depth);
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111
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112 static void ChangeStringEncoding(DcmItem& dataset,
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113 Encoding source,
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114 bool hasSourceCodeExtensions,
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115 Encoding target);
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116
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117 public:
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118 /**
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119 * Initialize DCMTK to use the default DICOM dictionaries (either
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120 * embedded into the binaries for official releases, or using the
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121 * environment variable "DCM_DICT_ENVIRONMENT_VARIABLE", or using
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122 * the system-wide path to the DCMTK library for developers)
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123 **/
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124 static void InitializeDictionary(bool loadPrivateDictionary);
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125
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126 /**
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127 * Replace the default DICOM dictionaries by the manually-provided
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128 * external dictionaries. This is needed to use DICONDE for
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129 * instance. Pay attention to the fact that the current dictionary
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130 * will be reinitialized (all its tags are cleared).
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131 **/
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132 static void LoadExternalDictionaries(const std::vector<std::string>& dictionaries);
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133
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134 static void RegisterDictionaryTag(const DicomTag& tag,
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135 ValueRepresentation vr,
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136 const std::string& name,
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137 unsigned int minMultiplicity,
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138 unsigned int maxMultiplicity,
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139 const std::string& privateCreator);
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140
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141 static Encoding DetectEncoding(bool& hasCodeExtensions,
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142 DcmItem& dataset,
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143 Encoding defaultEncoding);
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144
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145 // Compatibility wrapper for Orthanc <= 1.5.4
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146 static Encoding DetectEncoding(DcmItem& dataset,
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147 Encoding defaultEncoding);
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148
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149 static DicomTag Convert(const DcmTag& tag);
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150
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151 static DicomTag GetTag(const DcmElement& element);
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152
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153 static bool IsUnknownTag(const DicomTag& tag);
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154
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155 static DicomValue* ConvertLeafElement(DcmElement& element,
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156 DicomToJsonFlags flags,
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157 unsigned int maxStringLength,
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158 Encoding encoding,
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159 bool hasCodeExtensions,
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160 const std::set<DicomTag>& ignoreTagLength);
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161
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162 static void ExtractHeaderAsJson(Json::Value& target,
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163 DcmMetaInfo& header,
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164 DicomToJsonFormat format,
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165 DicomToJsonFlags flags,
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166 unsigned int maxStringLength);
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167
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168 static std::string GetTagName(const DicomTag& tag,
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169 const std::string& privateCreator);
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170
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171 static std::string GetTagName(const DcmElement& element);
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172
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173 static std::string GetTagName(const DicomElement& element);
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174
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175 static DicomTag ParseTag(const char* name);
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176
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177 static DicomTag ParseTag(const std::string& name);
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178
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179 // parses a list like "0010,0010;PatientBirthDate;0020,0020"
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180 static void ParseListOfTags(std::set<DicomTag>& result, const std::string& source);
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181
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182 static void ParseListOfTags(std::set<DicomTag>& result, const Json::Value& source);
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183
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184 static void FormatListOfTags(std::string& output, const std::set<DicomTag>& tags);
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185
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186 static void FormatListOfTags(Json::Value& output, const std::set<DicomTag>& tags);
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187
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188 static bool HasTag(const DicomMap& fields,
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189 const std::string& tagName);
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190
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191 static const DicomValue& GetValue(const DicomMap& fields,
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192 const std::string& tagName);
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193
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194 static void SetValue(DicomMap& target,
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195 const std::string& tagName,
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196 DicomValue* value);
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197
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198 static void ToJson(Json::Value& result,
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199 const DicomMap& values,
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200 DicomToJsonFormat format);
176
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201
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202 static std::string GenerateUniqueIdentifier(ResourceType level);
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203
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diff changeset
204 static bool SaveToMemoryBuffer(std::string& buffer,
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205 DcmDataset& dataSet);
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206
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207 static bool SaveToMemoryBuffer(std::string& buffer,
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208 DcmDataset& dataSet,
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209 std::string& errorMessage);
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210
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diff changeset
211 static bool Transcode(DcmFileFormat& dicom,
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212 DicomTransferSyntax syntax,
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diff changeset
213 const DcmRepresentationParameter* representation);
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214
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diff changeset
215 static ValueRepresentation Convert(DcmEVR vr);
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216
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parents: 1998
diff changeset
217 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag);
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218
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219 static DcmElement* CreateElementForTag(const DicomTag& tag,
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220 const std::string& privateCreator);
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221
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222 static void FillElementWithString(DcmElement& element,
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223 const std::string& utf8alue, // Encoded using UTF-8
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224 bool decodeDataUriScheme,
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diff changeset
225 Encoding dicomEncoding);
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226
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227 static DcmElement* FromJson(const DicomTag& tag,
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228 const Json::Value& element, // Encoded using UTF-8
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229 bool decodeDataUriScheme,
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diff changeset
230 Encoding dicomEncoding,
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231 const std::string& privateCreator);
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232
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parents: 1900
diff changeset
233 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset);
1934
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234
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diff changeset
235 static Encoding ExtractEncoding(const Json::Value& json,
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diff changeset
236 Encoding defaultEncoding);
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diff changeset
237
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diff changeset
238 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8
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239 bool generateIdentifiers,
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diff changeset
240 bool decodeDataUriScheme,
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241 Encoding defaultEncoding,
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242 const std::string& privateCreator);
1935
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243
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diff changeset
244 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer,
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diff changeset
245 size_t size);
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246
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diff changeset
247 static void FromJson(DicomMap& values,
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248 const Json::Value& result,
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249 const char* fieldName = NULL);
2209
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250
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diff changeset
251 static void ExtractDicomSummary(DicomMap& target,
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252 DcmItem& dataset,
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253 unsigned int maxStringLength,
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254 const std::set<DicomTag>& ignoreTagLength);
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255
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256 static void ExtractDicomAsJson(Json::Value& target,
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257 DcmDataset& dataset,
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258 DicomToJsonFormat format,
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259 DicomToJsonFlags flags,
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260 unsigned int maxStringLength,
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261 const std::set<DicomTag>& ignoreTagLength);
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262
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263 static void InitializeCodecs();
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264
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265 static void FinalizeCodecs();
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266
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267 static void Apply(DcmItem& dataset,
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268 ITagVisitor& visitor,
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269 Encoding defaultEncoding);
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270
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271 static bool LookupDcmtkTransferSyntax(E_TransferSyntax& target,
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272 DicomTransferSyntax source);
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273
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274 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target,
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275 E_TransferSyntax source);
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276
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277 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target,
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278 DcmFileFormat& dicom);
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279
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280 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target,
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281 DcmDataset& dicom);
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282
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283 static void LogMissingTagsForStore(DcmDataset& dicom);
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284
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285 static void RemovePath(DcmDataset& dataset,
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286 const DicomPath& path);
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287
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288 static void ClearPath(DcmDataset& dataset,
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289 const DicomPath& path,
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290 bool onlyIfExists);
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291
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292 static void ReplacePath(DcmDataset& dataset,
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293 const DicomPath& path,
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294 const DcmElement& element,
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295 DicomReplaceMode mode);
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296
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297 static bool LookupSequenceItem(DicomMap& target,
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298 DcmDataset& dataset,
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299 const DicomPath& path,
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300 size_t sequenceIndex);
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301
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302 static bool LookupStringValue(std::string& target,
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303 DcmDataset& dataset,
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304 const DicomTag& key);
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305 };
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306 }