Mercurial > hg > orthanc
annotate Core/DicomParsing/FromDcmtkBridge.h @ 3992:f9863630ec7f
working on the shared library for Orthanc framework
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 05 Jun 2020 16:07:01 +0200 |
| parents | e23026566536 |
| children |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
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36 #include "ITagVisitor.h" |
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37 #include "../DicomFormat/DicomElement.h" |
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38 #include "../DicomFormat/DicomMap.h" |
| 791 | 39 |
| 0 | 40 #include <dcmtk/dcmdata/dcdatset.h> |
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41 #include <dcmtk/dcmdata/dcmetinf.h> |
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42 #include <dcmtk/dcmdata/dcpixseq.h> |
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43 #include <dcmtk/dcmdata/dcfilefo.h> |
| 0 | 44 #include <json/json.h> |
| 45 | |
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46 #if !defined(ORTHANC_ENABLE_LUA) |
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47 # error The macro ORTHANC_ENABLE_LUA must be defined |
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48 #endif |
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49 |
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50 #if ORTHANC_ENABLE_DCMTK != 1 |
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51 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 |
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52 #endif |
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53 |
| 2126 | 54 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 55 # include <gtest/gtest_prod.h> | |
| 56 #endif | |
| 57 | |
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58 #if ORTHANC_ENABLE_LUA == 1 |
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59 # include "../Lua/LuaFunctionCall.h" |
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60 #endif |
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61 |
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62 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) |
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63 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined |
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64 #endif |
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65 |
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66 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) |
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67 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined |
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68 #endif |
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69 |
| 2126 | 70 |
| 62 | 71 namespace Orthanc |
| 0 | 72 { |
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73 class ORTHANC_PUBLIC FromDcmtkBridge : public boost::noncopyable |
| 0 | 74 { |
| 2126 | 75 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 76 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
| 77 #endif | |
| 78 | |
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79 friend class ParsedDicomFile; |
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80 |
| 2125 | 81 private: |
| 82 FromDcmtkBridge(); // Pure static class | |
| 83 | |
| 84 static void ExtractDicomSummary(DicomMap& target, | |
| 85 DcmItem& dataset, | |
| 86 unsigned int maxStringLength, | |
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87 Encoding defaultEncoding, |
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88 const std::set<DicomTag>& ignoreTagLength); |
| 2125 | 89 |
| 2126 | 90 static void DatasetToJson(Json::Value& parent, |
| 91 DcmItem& item, | |
| 92 DicomToJsonFormat format, | |
| 93 DicomToJsonFlags flags, | |
| 94 unsigned int maxStringLength, | |
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95 Encoding encoding, |
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96 bool hasCodeExtensions, |
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97 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 98 |
| 99 static void ElementToJson(Json::Value& parent, | |
| 100 DcmElement& element, | |
| 101 DicomToJsonFormat format, | |
| 102 DicomToJsonFlags flags, | |
| 103 unsigned int maxStringLength, | |
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104 Encoding dicomEncoding, |
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105 bool hasCodeExtensions, |
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106 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 107 |
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108 static void ExtractDicomAsJson(Json::Value& target, |
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109 DcmDataset& dataset, |
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110 DicomToJsonFormat format, |
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111 DicomToJsonFlags flags, |
| 2131 | 112 unsigned int maxStringLength, |
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113 Encoding defaultEncoding, |
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114 const std::set<DicomTag>& ignoreTagLength); |
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115 |
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116 static void ChangeStringEncoding(DcmItem& dataset, |
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117 Encoding source, |
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118 bool hasSourceCodeExtensions, |
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119 Encoding target); |
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120 |
| 0 | 121 public: |
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122 static void InitializeDictionary(bool loadPrivateDictionary); |
| 1656 | 123 |
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124 static void RegisterDictionaryTag(const DicomTag& tag, |
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125 ValueRepresentation vr, |
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126 const std::string& name, |
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127 unsigned int minMultiplicity, |
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128 unsigned int maxMultiplicity, |
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129 const std::string& privateCreator); |
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130 |
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131 static Encoding DetectEncoding(bool& hasCodeExtensions, |
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132 DcmItem& dataset, |
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133 Encoding defaultEncoding); |
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134 |
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135 static Encoding DetectEncoding(DcmItem& dataset, |
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136 Encoding defaultEncoding) |
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137 { |
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138 // Compatibility wrapper for Orthanc <= 1.5.4 |
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139 bool hasCodeExtensions; // ignored |
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140 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
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141 } |
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142 |
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143 static DicomTag Convert(const DcmTag& tag); |
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144 |
| 0 | 145 static DicomTag GetTag(const DcmElement& element); |
| 146 | |
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147 static bool IsUnknownTag(const DicomTag& tag); |
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148 |
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149 static DicomValue* ConvertLeafElement(DcmElement& element, |
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150 DicomToJsonFlags flags, |
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151 unsigned int maxStringLength, |
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152 Encoding encoding, |
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153 bool hasCodeExtensions, |
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154 const std::set<DicomTag>& ignoreTagLength); |
| 0 | 155 |
| 2126 | 156 static void ExtractHeaderAsJson(Json::Value& target, |
| 157 DcmMetaInfo& header, | |
| 158 DicomToJsonFormat format, | |
| 159 DicomToJsonFlags flags, | |
| 160 unsigned int maxStringLength); | |
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161 |
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162 static std::string GetTagName(const DicomTag& tag, |
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163 const std::string& privateCreator); |
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164 |
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165 static std::string GetTagName(const DcmElement& element); |
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166 |
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167 static std::string GetTagName(const DicomElement& element) |
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168 { |
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169 return GetTagName(element.GetTag(), ""); |
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170 } |
| 0 | 171 |
| 304 | 172 static DicomTag ParseTag(const char* name); |
| 0 | 173 |
| 304 | 174 static DicomTag ParseTag(const std::string& name) |
| 0 | 175 { |
| 304 | 176 return ParseTag(name.c_str()); |
| 0 | 177 } |
| 178 | |
| 179 static bool HasTag(const DicomMap& fields, | |
| 180 const std::string& tagName) | |
| 181 { | |
| 304 | 182 return fields.HasTag(ParseTag(tagName)); |
| 0 | 183 } |
| 184 | |
| 185 static const DicomValue& GetValue(const DicomMap& fields, | |
| 186 const std::string& tagName) | |
| 187 { | |
| 304 | 188 return fields.GetValue(ParseTag(tagName)); |
| 0 | 189 } |
| 190 | |
| 191 static void SetValue(DicomMap& target, | |
| 192 const std::string& tagName, | |
| 193 DicomValue* value) | |
| 194 { | |
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195 const DicomTag tag = ParseTag(tagName); |
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196 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value); |
| 0 | 197 } |
| 198 | |
| 199 static void ToJson(Json::Value& result, | |
| 1368 | 200 const DicomMap& values, |
| 201 bool simplify); | |
| 176 | 202 |
| 788 | 203 static std::string GenerateUniqueIdentifier(ResourceType level); |
|
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204 |
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205 static bool SaveToMemoryBuffer(std::string& buffer, |
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206 DcmDataset& dataSet); |
| 1360 | 207 |
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208 static bool Transcode(DcmFileFormat& dicom, |
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209 DicomTransferSyntax syntax, |
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210 const DcmRepresentationParameter* representation); |
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211 |
|
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212 static ValueRepresentation Convert(DcmEVR vr); |
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213 |
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214 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
| 1689 | 215 |
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216 static DcmElement* CreateElementForTag(const DicomTag& tag, |
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217 const std::string& privateCreator); |
| 1689 | 218 |
| 219 static void FillElementWithString(DcmElement& element, | |
| 1695 | 220 const std::string& utf8alue, // Encoded using UTF-8 |
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221 bool decodeDataUriScheme, |
| 1695 | 222 Encoding dicomEncoding); |
| 1689 | 223 |
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224 static DcmElement* FromJson(const DicomTag& tag, |
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225 const Json::Value& element, // Encoded using UTF-8 |
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226 bool decodeDataUriScheme, |
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227 Encoding dicomEncoding, |
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228 const std::string& privateCreator); |
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229 |
|
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230 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
|
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231 |
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232 static Encoding ExtractEncoding(const Json::Value& json, |
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233 Encoding defaultEncoding); |
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234 |
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235 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
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236 bool generateIdentifiers, |
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237 bool decodeDataUriScheme, |
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238 Encoding defaultEncoding, |
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239 const std::string& privateCreator); |
|
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240 |
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241 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
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242 size_t size); |
|
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243 |
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244 static void FromJson(DicomMap& values, |
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245 const Json::Value& result); |
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246 |
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247 #if ORTHANC_ENABLE_LUA == 1 |
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248 static void ExecuteToDicom(DicomMap& target, |
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249 LuaFunctionCall& call); |
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250 #endif |
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251 |
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252 static void ExtractDicomSummary(DicomMap& target, |
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253 DcmItem& dataset, |
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254 const std::set<DicomTag>& ignoreTagLength); |
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255 |
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256 static void ExtractDicomSummary(DicomMap& target, |
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257 DcmItem& dataset) |
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258 { |
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259 std::set<DicomTag> none; |
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260 ExtractDicomSummary(target, dataset, none); |
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261 } |
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262 |
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263 static void ExtractDicomAsJson(Json::Value& target, |
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264 DcmDataset& dataset, |
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265 const std::set<DicomTag>& ignoreTagLength); |
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266 |
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267 static void InitializeCodecs(); |
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268 |
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269 static void FinalizeCodecs(); |
|
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270 |
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271 static void Apply(DcmItem& dataset, |
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272 ITagVisitor& visitor, |
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273 Encoding defaultEncoding); |
|
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274 |
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275 static bool LookupDcmtkTransferSyntax(E_TransferSyntax& target, |
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276 DicomTransferSyntax source); |
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277 |
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278 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
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279 E_TransferSyntax source); |
| 3881 | 280 |
| 281 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, | |
|
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282 DcmFileFormat& dicom); |
| 0 | 283 }; |
| 284 } |