Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h @ 4119:bf7b9edf6b81 framework-lgpl
re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 07 Jul 2020 19:17:56 +0200 |
| parents | c02a2d9efbc2 |
| children | 2724977419fb |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
| 136 | 11 * |
| 0 | 12 * This program is distributed in the hope that it will be useful, but |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
| 0 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
| 0 | 20 **/ |
| 21 | |
| 22 | |
| 23 #pragma once | |
| 24 | |
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25 #include "ITagVisitor.h" |
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26 #include "../DicomFormat/DicomElement.h" |
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27 #include "../DicomFormat/DicomMap.h" |
| 791 | 28 |
| 0 | 29 #include <dcmtk/dcmdata/dcdatset.h> |
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30 #include <dcmtk/dcmdata/dcmetinf.h> |
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31 #include <dcmtk/dcmdata/dcpixseq.h> |
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32 #include <dcmtk/dcmdata/dcfilefo.h> |
| 0 | 33 #include <json/json.h> |
| 34 | |
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35 #if ORTHANC_ENABLE_DCMTK != 1 |
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36 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 |
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37 #endif |
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38 |
| 2126 | 39 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 40 # include <gtest/gtest_prod.h> | |
| 41 #endif | |
| 42 | |
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43 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) |
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44 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined |
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45 #endif |
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46 |
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47 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) |
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48 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined |
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49 #endif |
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50 |
| 2126 | 51 |
| 62 | 52 namespace Orthanc |
| 0 | 53 { |
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54 class ORTHANC_PUBLIC FromDcmtkBridge : public boost::noncopyable |
| 0 | 55 { |
| 2126 | 56 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 57 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
| 58 #endif | |
| 59 | |
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60 friend class ParsedDicomFile; |
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61 |
| 2125 | 62 private: |
| 63 FromDcmtkBridge(); // Pure static class | |
| 64 | |
| 65 static void ExtractDicomSummary(DicomMap& target, | |
| 66 DcmItem& dataset, | |
| 67 unsigned int maxStringLength, | |
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68 Encoding defaultEncoding, |
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69 const std::set<DicomTag>& ignoreTagLength); |
| 2125 | 70 |
| 2126 | 71 static void DatasetToJson(Json::Value& parent, |
| 72 DcmItem& item, | |
| 73 DicomToJsonFormat format, | |
| 74 DicomToJsonFlags flags, | |
| 75 unsigned int maxStringLength, | |
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76 Encoding encoding, |
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77 bool hasCodeExtensions, |
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78 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 79 |
| 80 static void ElementToJson(Json::Value& parent, | |
| 81 DcmElement& element, | |
| 82 DicomToJsonFormat format, | |
| 83 DicomToJsonFlags flags, | |
| 84 unsigned int maxStringLength, | |
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85 Encoding dicomEncoding, |
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86 bool hasCodeExtensions, |
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87 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 88 |
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89 static void ExtractDicomAsJson(Json::Value& target, |
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90 DcmDataset& dataset, |
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91 DicomToJsonFormat format, |
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92 DicomToJsonFlags flags, |
| 2131 | 93 unsigned int maxStringLength, |
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94 Encoding defaultEncoding, |
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95 const std::set<DicomTag>& ignoreTagLength); |
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96 |
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97 static void ChangeStringEncoding(DcmItem& dataset, |
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98 Encoding source, |
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99 bool hasSourceCodeExtensions, |
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100 Encoding target); |
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101 |
| 0 | 102 public: |
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103 static void InitializeDictionary(bool loadPrivateDictionary); |
| 1656 | 104 |
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105 static void RegisterDictionaryTag(const DicomTag& tag, |
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106 ValueRepresentation vr, |
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107 const std::string& name, |
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108 unsigned int minMultiplicity, |
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109 unsigned int maxMultiplicity, |
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110 const std::string& privateCreator); |
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111 |
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112 static Encoding DetectEncoding(bool& hasCodeExtensions, |
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113 DcmItem& dataset, |
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114 Encoding defaultEncoding); |
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115 |
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116 static Encoding DetectEncoding(DcmItem& dataset, |
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117 Encoding defaultEncoding) |
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118 { |
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119 // Compatibility wrapper for Orthanc <= 1.5.4 |
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120 bool hasCodeExtensions; // ignored |
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121 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
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122 } |
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123 |
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124 static DicomTag Convert(const DcmTag& tag); |
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125 |
| 0 | 126 static DicomTag GetTag(const DcmElement& element); |
| 127 | |
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128 static bool IsUnknownTag(const DicomTag& tag); |
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129 |
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130 static DicomValue* ConvertLeafElement(DcmElement& element, |
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131 DicomToJsonFlags flags, |
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132 unsigned int maxStringLength, |
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133 Encoding encoding, |
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134 bool hasCodeExtensions, |
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135 const std::set<DicomTag>& ignoreTagLength); |
| 0 | 136 |
| 2126 | 137 static void ExtractHeaderAsJson(Json::Value& target, |
| 138 DcmMetaInfo& header, | |
| 139 DicomToJsonFormat format, | |
| 140 DicomToJsonFlags flags, | |
| 141 unsigned int maxStringLength); | |
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142 |
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143 static std::string GetTagName(const DicomTag& tag, |
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144 const std::string& privateCreator); |
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145 |
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146 static std::string GetTagName(const DcmElement& element); |
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147 |
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148 static std::string GetTagName(const DicomElement& element) |
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149 { |
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150 return GetTagName(element.GetTag(), ""); |
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151 } |
| 0 | 152 |
| 304 | 153 static DicomTag ParseTag(const char* name); |
| 0 | 154 |
| 304 | 155 static DicomTag ParseTag(const std::string& name) |
| 0 | 156 { |
| 304 | 157 return ParseTag(name.c_str()); |
| 0 | 158 } |
| 159 | |
| 160 static bool HasTag(const DicomMap& fields, | |
| 161 const std::string& tagName) | |
| 162 { | |
| 304 | 163 return fields.HasTag(ParseTag(tagName)); |
| 0 | 164 } |
| 165 | |
| 166 static const DicomValue& GetValue(const DicomMap& fields, | |
| 167 const std::string& tagName) | |
| 168 { | |
| 304 | 169 return fields.GetValue(ParseTag(tagName)); |
| 0 | 170 } |
| 171 | |
| 172 static void SetValue(DicomMap& target, | |
| 173 const std::string& tagName, | |
| 174 DicomValue* value) | |
| 175 { | |
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176 const DicomTag tag = ParseTag(tagName); |
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177 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value); |
| 0 | 178 } |
| 179 | |
| 180 static void ToJson(Json::Value& result, | |
| 1368 | 181 const DicomMap& values, |
| 182 bool simplify); | |
| 176 | 183 |
| 788 | 184 static std::string GenerateUniqueIdentifier(ResourceType level); |
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185 |
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186 static bool SaveToMemoryBuffer(std::string& buffer, |
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187 DcmDataset& dataSet); |
| 1360 | 188 |
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189 static bool Transcode(DcmFileFormat& dicom, |
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190 DicomTransferSyntax syntax, |
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191 const DcmRepresentationParameter* representation); |
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192 |
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193 static ValueRepresentation Convert(DcmEVR vr); |
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194 |
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195 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
| 1689 | 196 |
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197 static DcmElement* CreateElementForTag(const DicomTag& tag, |
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198 const std::string& privateCreator); |
| 1689 | 199 |
| 200 static void FillElementWithString(DcmElement& element, | |
| 1695 | 201 const std::string& utf8alue, // Encoded using UTF-8 |
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202 bool decodeDataUriScheme, |
| 1695 | 203 Encoding dicomEncoding); |
| 1689 | 204 |
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205 static DcmElement* FromJson(const DicomTag& tag, |
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206 const Json::Value& element, // Encoded using UTF-8 |
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207 bool decodeDataUriScheme, |
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208 Encoding dicomEncoding, |
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209 const std::string& privateCreator); |
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210 |
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211 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
|
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212 |
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213 static Encoding ExtractEncoding(const Json::Value& json, |
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214 Encoding defaultEncoding); |
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215 |
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216 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
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217 bool generateIdentifiers, |
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218 bool decodeDataUriScheme, |
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219 Encoding defaultEncoding, |
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220 const std::string& privateCreator); |
|
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221 |
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222 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
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223 size_t size); |
|
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224 |
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225 static void FromJson(DicomMap& values, |
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226 const Json::Value& result); |
|
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227 |
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228 static void ExtractDicomSummary(DicomMap& target, |
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229 DcmItem& dataset, |
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230 const std::set<DicomTag>& ignoreTagLength); |
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231 |
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232 static void ExtractDicomSummary(DicomMap& target, |
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233 DcmItem& dataset) |
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234 { |
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235 std::set<DicomTag> none; |
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236 ExtractDicomSummary(target, dataset, none); |
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237 } |
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238 |
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239 static void ExtractDicomAsJson(Json::Value& target, |
|
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240 DcmDataset& dataset, |
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241 const std::set<DicomTag>& ignoreTagLength); |
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242 |
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243 static void InitializeCodecs(); |
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244 |
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245 static void FinalizeCodecs(); |
|
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246 |
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247 static void Apply(DcmItem& dataset, |
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248 ITagVisitor& visitor, |
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249 Encoding defaultEncoding); |
|
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250 |
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251 static bool LookupDcmtkTransferSyntax(E_TransferSyntax& target, |
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252 DicomTransferSyntax source); |
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253 |
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254 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
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255 E_TransferSyntax source); |
| 3881 | 256 |
| 257 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, | |
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258 DcmFileFormat& dicom); |
| 0 | 259 }; |
| 260 } |