annotate OrthancServer/FromDcmtkBridge.h @ 285:4031f73fe0e4

access to the raw dicom tags
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 12 Dec 2012 17:53:14 +0100
parents 81f11fb357f2
children 4d7469f72a0b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012 Medical Physics Department, CHU of Liege,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Belgium
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 * This program is free software: you can redistribute it and/or
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * modify it under the terms of the GNU General Public License as
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * published by the Free Software Foundation, either version 3 of the
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * License, or (at your option) any later version.
136
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
10 *
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
11 * In addition, as a special exception, the copyright holders of this
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
12 * program give permission to link the code of its release with the
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
14 * that use the same license as the "OpenSSL" library), and distribute
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
15 * the linked executables. You must obey the GNU General Public License
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
16 * in all respects for all of the code used other than "OpenSSL". If you
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
17 * modify file(s) with this exception, you may extend this exception to
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
18 * your version of the file(s), but you are not obligated to do so. If
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
19 * you do not wish to do so, delete this exception statement from your
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
20 * version. If you delete this exception statement from all source files
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 62
diff changeset
21 * in the program, then also delete it here.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 * This program is distributed in the hope that it will be useful, but
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 * WITHOUT ANY WARRANTY; without even the implied warranty of
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 * General Public License for more details.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 * You should have received a copy of the GNU General Public License
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 #pragma once
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 #include "../Core/DicomFormat/DicomMap.h"
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
36 #include "../Core/RestApi/RestApiOutput.h"
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
37 #include "../Core/Toolbox.h"
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
38
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 #include <dcmtk/dcmdata/dcdatset.h>
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
40 #include <dcmtk/dcmdata/dcfilefo.h>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 #include <json/json.h>
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
42 #include <memory>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
44 namespace Orthanc
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 {
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
46 enum ImageExtractionMode
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
47 {
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
48 ImageExtractionMode_Preview,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
49 ImageExtractionMode_UInt8,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
50 ImageExtractionMode_UInt16
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
51 };
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
52
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
53 enum DicomRootLevel
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
54 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
55 DicomRootLevel_Study,
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
56 DicomRootLevel_Series,
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
57 DicomRootLevel_Instance
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
58 };
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
59
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
60 class ParsedDicomFile : public IDynamicObject
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
61 {
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
62 private:
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
63 std::auto_ptr<DcmFileFormat> file_;
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
64
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
65 public:
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
66 ParsedDicomFile(const std::string& content);
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
67
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
68 DcmFileFormat& GetDicom()
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
69 {
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
70 return *file_;
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
71 }
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
72
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
73 void SendPathValue(RestApiOutput& output,
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
74 const UriComponents& uri);
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
75 };
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 176
diff changeset
76
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 class FromDcmtkBridge
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 public:
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 static void Convert(DicomMap& target, DcmDataset& dataset);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 static DicomTag GetTag(const DcmElement& element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 static DicomValue* ConvertLeafElement(DcmElement& element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 static void ToJson(Json::Value& target,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 DcmDataset& dataset,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 unsigned int maxStringLength = 256);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 static void ToJson(Json::Value& target,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 const std::string& path,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 unsigned int maxStringLength = 256);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
94 static void ExtractPngImage(std::string& result,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
95 DcmDataset& dataset,
53
293038baf8f1 access to multi-frame images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
96 unsigned int frame,
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
97 ImageExtractionMode mode);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
99 static void ExtractPngImage(std::string& result,
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
100 const std::string& dicomContent,
53
293038baf8f1 access to multi-frame images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
101 unsigned int frame,
42
ea48f38afe5f access to raw images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 41
diff changeset
102 ImageExtractionMode mode);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 static std::string GetName(const DicomTag& tag);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 static DicomTag FindTag(const char* name);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 static DicomTag FindTag(const std::string& name)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 return FindTag(name.c_str());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 static bool HasTag(const DicomMap& fields,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 const std::string& tagName)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 return fields.HasTag(FindTag(tagName));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 static const DicomValue& GetValue(const DicomMap& fields,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 const std::string& tagName)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 return fields.GetValue(FindTag(tagName));
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125 static void SetValue(DicomMap& target,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 const std::string& tagName,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 DicomValue* value)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 target.SetValue(FindTag(tagName), value);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 static void Print(FILE* fp,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133 const DicomMap& m);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 static void ToJson(Json::Value& result,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 const DicomMap& values);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
137
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
138 static std::string GenerateUniqueIdentifier(DicomRootLevel level);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 };
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 }