Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.h @ 4582:fb0379abb4a7 db-changes
assume that "GetDatabaseVersion()" can run out of a database transaction
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 09 Mar 2021 15:25:17 +0100 |
| parents | bb3c82b8f373 |
| children | 42a846166fa3 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 4045 | 36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" |
| 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" | |
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38 |
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39 #include "Database/IDatabaseWrapper.h" |
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40 #include "DicomInstanceOrigin.h" |
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41 |
| 0 | 42 #include <boost/thread.hpp> |
| 220 | 43 #include <boost/noncopyable.hpp> |
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44 |
| 62 | 45 namespace Orthanc |
| 0 | 46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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49 class ServerContext; |
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50 |
| 220 | 51 class ServerIndex : public boost::noncopyable |
| 0 | 52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
| 0 | 57 private: |
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58 class Listener; |
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59 class Transaction; |
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60 class UnstableResourcePayload; |
| 3027 | 61 class MainDicomTagsRegistry; |
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62 |
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63 bool done_; |
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64 boost::mutex monitoringMutex_; |
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65 boost::mutex databaseMutex_; // TODO - REMOVE |
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66 boost::thread flushThread_; |
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67 boost::thread unstableResourcesMonitorThread_; |
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69 std::unique_ptr<Listener> listener_; |
| 1247 | 70 IDatabaseWrapper& db_; |
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71 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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72 |
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73 uint64_t maximumStorageSize_; |
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74 unsigned int maximumPatients_; |
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75 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; |
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76 |
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77 static void FlushThread(ServerIndex* that, |
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78 unsigned int threadSleep); |
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79 |
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80 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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81 unsigned int threadSleep); |
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82 |
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83 void StandaloneRecycling(uint64_t maximumStorageSize, |
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84 unsigned int maximumPatientCount); |
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85 |
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86 void MarkAsUnstable(int64_t id, |
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87 Orthanc::ResourceType type, |
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88 const std::string& publicId); |
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89 |
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90 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
| 3027 | 91 const DatabaseLookup& source, |
| 92 ResourceType level) const; | |
| 93 | |
| 4554 | 94 bool IsUnstableResource(int64_t id); |
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95 |
| 0 | 96 public: |
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97 ServerIndex(ServerContext& context, |
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98 IDatabaseWrapper& database, |
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99 unsigned int threadSleepGranularityMilliseconds); |
| 0 | 100 |
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101 ~ServerIndex(); |
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102 |
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103 void Stop(); |
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104 |
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105 // "size == 0" means no limit on the storage size |
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106 void SetMaximumStorageSize(uint64_t size); |
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107 |
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108 // "count == 0" means no limit on the number of patients |
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109 void SetMaximumPatientCount(unsigned int count); |
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110 |
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111 // It is assumed that "GetDatabaseVersion()" can run out of a |
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112 // database transaction |
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113 unsigned int GetDatabaseVersion() |
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114 { |
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115 return db_.GetDatabaseVersion(); |
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116 } |
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117 |
| 0 | 118 |
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119 |
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120 /*** |
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121 ** PROTOTYPING FOR DB REFACTORING BELOW |
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122 ***/ |
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123 |
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124 public: |
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125 class ReadOnlyTransaction : public boost::noncopyable |
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126 { |
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127 protected: |
| 4554 | 128 IDatabaseWrapper& db_; |
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129 |
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130 public: |
| 4555 | 131 explicit ReadOnlyTransaction(IDatabaseWrapper& db) : |
| 4554 | 132 db_(db) |
| 133 { | |
| 134 } | |
| 135 | |
| 136 /** | |
| 137 * Higher-level constructions | |
| 138 **/ | |
| 139 | |
| 140 SeriesStatus GetSeriesStatus(int64_t id, | |
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141 int64_t expectedNumberOfInstances); |
| 4554 | 142 |
| 143 void MainDicomTagsToJson(Json::Value& result, | |
| 144 int64_t resourceId, | |
| 4578 | 145 ResourceType resourceType); |
| 4554 | 146 |
| 147 /** | |
| 148 * Read-only methods from "IDatabaseWrapper" | |
| 149 **/ | |
| 150 | |
| 4562 | 151 void ApplyLookupResources(std::list<std::string>& resourcesId, |
| 152 std::list<std::string>* instancesId, // Can be NULL if not needed | |
| 153 const std::vector<DatabaseConstraint>& lookup, | |
| 154 ResourceType queryLevel, | |
| 155 size_t limit) | |
| 156 { | |
| 157 return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); | |
| 158 } | |
| 159 | |
| 4554 | 160 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
| 161 int64_t id) | |
| 162 { | |
| 163 db_.GetAllMetadata(target, id); | |
| 4555 | 164 } |
| 165 | |
| 166 void GetAllPublicIds(std::list<std::string>& target, | |
| 167 ResourceType resourceType) | |
| 168 { | |
| 169 return db_.GetAllPublicIds(target, resourceType); | |
| 170 } | |
| 171 | |
| 172 void GetAllPublicIds(std::list<std::string>& target, | |
| 173 ResourceType resourceType, | |
| 174 size_t since, | |
| 175 size_t limit) | |
| 176 { | |
| 177 return db_.GetAllPublicIds(target, resourceType, since, limit); | |
| 178 } | |
| 4554 | 179 |
| 4558 | 180 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
| 181 bool& done /*out*/, | |
| 182 int64_t since, | |
| 183 uint32_t maxResults) | |
| 184 { | |
| 185 db_.GetChanges(target, done, since, maxResults); | |
| 186 } | |
| 187 | |
| 4559 | 188 void GetChildrenInternalId(std::list<int64_t>& target, |
| 189 int64_t id) | |
| 190 { | |
| 191 db_.GetChildrenInternalId(target, id); | |
| 192 } | |
| 193 | |
| 4554 | 194 void GetChildrenPublicId(std::list<std::string>& target, |
| 195 int64_t id) | |
| 196 { | |
| 197 db_.GetChildrenPublicId(target, id); | |
| 198 } | |
| 199 | |
| 4558 | 200 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
| 201 bool& done /*out*/, | |
| 202 int64_t since, | |
| 203 uint32_t maxResults) | |
| 204 { | |
| 205 return db_.GetExportedResources(target, done, since, maxResults); | |
| 206 } | |
| 207 | |
| 208 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) | |
| 209 { | |
| 210 db_.GetLastChange(target); | |
| 211 } | |
| 212 | |
| 213 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) | |
| 214 { | |
| 215 return db_.GetLastExportedResource(target); | |
| 216 } | |
| 217 | |
| 218 int64_t GetLastChangeIndex() | |
| 219 { | |
| 220 return db_.GetLastChangeIndex(); | |
| 221 } | |
| 222 | |
| 4554 | 223 void GetMainDicomTags(DicomMap& map, |
| 224 int64_t id) | |
| 225 { | |
| 226 db_.GetMainDicomTags(map, id); | |
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227 } |
| 4558 | 228 |
| 4559 | 229 std::string GetPublicId(int64_t resourceId) |
| 230 { | |
| 231 return db_.GetPublicId(resourceId); | |
| 232 } | |
| 233 | |
| 4558 | 234 uint64_t GetResourceCount(ResourceType resourceType) |
| 235 { | |
| 236 return db_.GetResourceCount(resourceType); | |
| 237 } | |
| 238 | |
| 4559 | 239 ResourceType GetResourceType(int64_t resourceId) |
| 240 { | |
| 241 return db_.GetResourceType(resourceId); | |
| 242 } | |
| 243 | |
| 4558 | 244 uint64_t GetTotalCompressedSize() |
| 245 { | |
| 246 return db_.GetTotalCompressedSize(); | |
| 247 } | |
| 248 | |
| 249 uint64_t GetTotalUncompressedSize() | |
| 250 { | |
| 251 return db_.GetTotalUncompressedSize(); | |
| 252 } | |
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253 |
| 4559 | 254 bool IsProtectedPatient(int64_t internalId) |
| 255 { | |
| 256 return db_.IsProtectedPatient(internalId); | |
| 257 } | |
| 258 | |
| 4560 | 259 void ListAvailableAttachments(std::set<FileContentType>& target, |
| 260 int64_t id) | |
| 261 { | |
| 262 db_.ListAvailableAttachments(target, id); | |
| 263 } | |
| 264 | |
| 4554 | 265 bool LookupAttachment(FileInfo& attachment, |
| 266 int64_t id, | |
| 267 FileContentType contentType) | |
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268 { |
| 4554 | 269 return db_.LookupAttachment(attachment, id, contentType); |
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270 } |
| 4554 | 271 |
| 4562 | 272 bool LookupGlobalProperty(std::string& target, |
| 273 GlobalProperty property) | |
| 274 { | |
| 275 return db_.LookupGlobalProperty(target, property); | |
| 276 } | |
| 277 | |
| 4560 | 278 bool LookupMetadata(std::string& target, |
| 279 int64_t id, | |
| 280 MetadataType type) | |
| 281 { | |
| 282 return db_.LookupMetadata(target, id, type); | |
| 283 } | |
| 284 | |
| 285 bool LookupParent(int64_t& parentId, | |
| 286 int64_t resourceId) | |
| 287 { | |
| 288 return db_.LookupParent(parentId, resourceId); | |
| 289 } | |
| 290 | |
| 4554 | 291 bool LookupResource(int64_t& id, |
| 292 ResourceType& type, | |
| 293 const std::string& publicId) | |
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294 { |
| 4554 | 295 return db_.LookupResource(id, type, publicId); |
| 296 } | |
| 297 | |
| 298 bool LookupResourceAndParent(int64_t& id, | |
| 299 ResourceType& type, | |
| 300 std::string& parentPublicId, | |
| 301 const std::string& publicId) | |
| 302 { | |
| 303 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); | |
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304 } |
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305 }; |
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306 |
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307 |
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308 class ReadWriteTransaction : public ReadOnlyTransaction |
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309 { |
| 4567 | 310 private: |
| 4573 | 311 Listener& listener_; |
| 312 ServerIndex& index_; // TODO - REMOVE | |
| 4567 | 313 |
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314 public: |
| 4567 | 315 ReadWriteTransaction(IDatabaseWrapper& db, |
| 4573 | 316 Listener& listener, |
| 4567 | 317 ServerIndex& index) : |
| 318 ReadOnlyTransaction(db), | |
| 4573 | 319 listener_(listener), |
| 320 index_(index) | |
| 4567 | 321 { |
| 322 } | |
| 323 | |
| 4573 | 324 Listener& GetListener() |
| 325 { | |
| 326 return listener_; | |
| 327 } | |
| 328 | |
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329 void AddAttachment(int64_t id, |
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330 const FileInfo& attachment) |
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331 { |
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332 db_.AddAttachment(id, attachment); |
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333 } |
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334 |
| 4567 | 335 void ClearChanges() |
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336 { |
| 4567 | 337 db_.ClearChanges(); |
| 338 } | |
| 339 | |
| 340 void ClearExportedResources() | |
| 341 { | |
| 342 db_.ClearExportedResources(); | |
| 343 } | |
| 344 | |
| 4574 | 345 void ClearMainDicomTags(int64_t id) |
| 346 { | |
| 347 return db_.ClearMainDicomTags(id); | |
| 348 } | |
| 349 | |
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350 bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */ |
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351 int64_t& instanceId, /* out */ |
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352 const std::string& patient, |
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353 const std::string& study, |
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354 const std::string& series, |
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355 const std::string& instance) |
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356 { |
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357 return db_.CreateInstance(result, instanceId, patient, study, series, instance); |
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358 } |
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359 |
| 4568 | 360 void DeleteAttachment(int64_t id, |
| 361 FileContentType attachment) | |
| 362 { | |
| 363 return db_.DeleteAttachment(id, attachment); | |
| 364 } | |
| 365 | |
| 4567 | 366 void DeleteMetadata(int64_t id, |
| 367 MetadataType type) | |
| 368 { | |
| 369 db_.DeleteMetadata(id, type); | |
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370 } |
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371 |
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372 void DeleteResource(int64_t id) |
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373 { |
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374 db_.DeleteResource(id); |
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375 } |
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376 |
| 4567 | 377 void LogChange(int64_t internalId, |
| 378 ChangeType changeType, | |
| 379 ResourceType resourceType, | |
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380 const std::string& publicId); |
| 4567 | 381 |
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382 void LogExportedResource(const ExportedResource& resource) |
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383 { |
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384 db_.LogExportedResource(resource); |
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385 } |
| 4567 | 386 |
| 387 void SetGlobalProperty(GlobalProperty property, | |
| 388 const std::string& value) | |
| 389 { | |
| 390 db_.SetGlobalProperty(property, value); | |
| 391 } | |
| 392 | |
| 393 void SetMetadata(int64_t id, | |
| 394 MetadataType type, | |
| 395 const std::string& value) | |
| 396 { | |
| 397 return db_.SetMetadata(id, type, value); | |
| 398 } | |
| 399 | |
| 400 void SetProtectedPatient(int64_t internalId, | |
| 401 bool isProtected) | |
| 402 { | |
| 403 db_.SetProtectedPatient(internalId, isProtected); | |
| 404 } | |
| 4574 | 405 |
| 406 void SetResourcesContent(const ResourcesContent& content) | |
| 407 { | |
| 408 db_.SetResourcesContent(content); | |
| 409 } | |
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410 |
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411 void Recycle(uint64_t maximumStorageSize, |
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412 unsigned int maximumPatients, |
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413 uint64_t addedInstanceSize, |
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414 const std::string& newPatientId); |
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415 }; |
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416 |
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417 |
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418 class IReadOnlyOperations : public boost::noncopyable |
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419 { |
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420 public: |
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421 virtual ~IReadOnlyOperations() |
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422 { |
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423 } |
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424 |
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425 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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426 }; |
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427 |
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428 |
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429 class IReadWriteOperations : public boost::noncopyable |
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430 { |
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431 public: |
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432 virtual ~IReadWriteOperations() |
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433 { |
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434 } |
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435 |
| 4573 | 436 virtual void Apply(ReadWriteTransaction& transaction) = 0; |
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437 }; |
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438 |
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439 private: |
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440 void ApplyInternal(IReadOnlyOperations* readOperations, |
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441 IReadWriteOperations* writeOperations); |
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442 |
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443 unsigned int maxRetries_; |
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444 |
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445 public: |
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446 void Apply(IReadOnlyOperations& operations); |
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447 |
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448 void Apply(IReadWriteOperations& operations); |
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449 |
| 4554 | 450 bool ExpandResource(Json::Value& target, |
| 451 const std::string& publicId, | |
| 452 ResourceType level); | |
| 453 | |
| 454 void GetAllMetadata(std::map<MetadataType, std::string>& target, | |
| 455 const std::string& publicId, | |
| 456 ResourceType level); | |
| 4555 | 457 |
| 458 void GetAllUuids(std::list<std::string>& target, | |
| 459 ResourceType resourceType); | |
| 460 | |
| 461 void GetAllUuids(std::list<std::string>& target, | |
| 462 ResourceType resourceType, | |
| 463 size_t since, | |
| 464 size_t limit); | |
| 465 | |
| 4558 | 466 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
| 467 /* out */ uint64_t& uncompressedSize, | |
| 468 /* out */ uint64_t& countPatients, | |
| 469 /* out */ uint64_t& countStudies, | |
| 470 /* out */ uint64_t& countSeries, | |
| 471 /* out */ uint64_t& countInstances); | |
| 472 | |
| 4555 | 473 bool LookupAttachment(FileInfo& attachment, |
| 474 const std::string& instancePublicId, | |
| 475 FileContentType contentType); | |
| 4558 | 476 |
| 477 void GetChanges(Json::Value& target, | |
| 478 int64_t since, | |
| 479 unsigned int maxResults); | |
| 480 | |
| 481 void GetLastChange(Json::Value& target); | |
| 482 | |
| 483 void GetExportedResources(Json::Value& target, | |
| 484 int64_t since, | |
| 485 unsigned int maxResults); | |
| 486 | |
| 487 void GetLastExportedResource(Json::Value& target); | |
| 488 | |
| 4559 | 489 bool IsProtectedPatient(const std::string& publicId); |
| 490 | |
| 491 void GetChildren(std::list<std::string>& result, | |
| 492 const std::string& publicId); | |
| 493 | |
| 494 void GetChildInstances(std::list<std::string>& result, | |
| 495 const std::string& publicId); | |
| 4560 | 496 |
| 497 bool LookupMetadata(std::string& target, | |
| 498 const std::string& publicId, | |
| 499 ResourceType expectedType, | |
| 500 MetadataType type); | |
| 501 | |
| 502 void ListAvailableAttachments(std::set<FileContentType>& target, | |
| 503 const std::string& publicId, | |
| 504 ResourceType expectedType); | |
| 505 | |
| 506 bool LookupParent(std::string& target, | |
| 507 const std::string& publicId); | |
| 4562 | 508 |
| 509 void GetResourceStatistics(/* out */ ResourceType& type, | |
| 510 /* out */ uint64_t& diskSize, | |
| 511 /* out */ uint64_t& uncompressedSize, | |
| 512 /* out */ unsigned int& countStudies, | |
| 513 /* out */ unsigned int& countSeries, | |
| 514 /* out */ unsigned int& countInstances, | |
| 515 /* out */ uint64_t& dicomDiskSize, | |
| 516 /* out */ uint64_t& dicomUncompressedSize, | |
| 517 const std::string& publicId); | |
| 518 | |
| 519 void LookupIdentifierExact(std::vector<std::string>& result, | |
| 520 ResourceType level, | |
| 521 const DicomTag& tag, | |
| 522 const std::string& value); | |
| 523 | |
| 524 bool LookupGlobalProperty(std::string& value, | |
| 525 GlobalProperty property); | |
| 526 | |
| 527 std::string GetGlobalProperty(GlobalProperty property, | |
| 528 const std::string& defaultValue); | |
| 529 | |
| 530 bool GetMainDicomTags(DicomMap& result, | |
| 531 const std::string& publicId, | |
| 532 ResourceType expectedType, | |
| 533 ResourceType levelOfInterest); | |
|
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534 |
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535 // Only applicable at the instance level |
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536 bool GetAllMainDicomTags(DicomMap& result, |
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537 const std::string& instancePublicId); |
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538 |
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539 bool LookupResourceType(ResourceType& type, |
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540 const std::string& publicId); |
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541 |
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542 bool LookupParent(std::string& target, |
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543 const std::string& publicId, |
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544 ResourceType parentType); |
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545 |
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546 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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547 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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548 const DatabaseLookup& lookup, |
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549 ResourceType queryLevel, |
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550 size_t limit); |
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551 |
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552 bool DeleteResource(Json::Value& target /* out */, |
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553 const std::string& uuid, |
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554 ResourceType expectedType); |
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555 |
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556 void LogExportedResource(const std::string& publicId, |
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557 const std::string& remoteModality); |
| 4567 | 558 |
| 559 void SetProtectedPatient(const std::string& publicId, | |
| 560 bool isProtected); | |
| 561 | |
| 562 void SetMetadata(const std::string& publicId, | |
| 563 MetadataType type, | |
| 564 const std::string& value); | |
| 565 | |
| 566 void DeleteMetadata(const std::string& publicId, | |
| 567 MetadataType type); | |
| 568 | |
| 569 uint64_t IncrementGlobalSequence(GlobalProperty sequence); | |
| 570 | |
| 571 void DeleteChanges(); | |
| 572 | |
| 573 void DeleteExportedResources(); | |
| 574 | |
| 575 void SetGlobalProperty(GlobalProperty property, | |
| 576 const std::string& value); | |
| 4568 | 577 |
| 578 void DeleteAttachment(const std::string& publicId, | |
| 579 FileContentType type); | |
| 580 | |
| 581 void LogChange(ChangeType changeType, | |
| 4579 | 582 const std::string& publicId, |
| 583 ResourceType level); | |
| 4574 | 584 |
| 585 void ReconstructInstance(const ParsedDicomFile& dicom); | |
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586 |
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587 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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588 const DicomMap& dicomSummary, |
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589 const Attachments& attachments, |
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590 const MetadataMap& metadata, |
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591 const DicomInstanceOrigin& origin, |
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592 bool overwrite, |
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593 bool hasTransferSyntax, |
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594 DicomTransferSyntax transferSyntax, |
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595 bool hasPixelDataOffset, |
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596 uint64_t pixelDataOffset); |
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597 |
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598 StoreStatus AddAttachment(const FileInfo& attachment, |
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599 const std::string& publicId); |
| 0 | 600 }; |
| 601 } |