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annotate OrthancServer/Sources/ServerIndex.h @ 4551:350a22c094f2 db-changes

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testing replay of transactions
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 02 Mar 2021 19:36:59 +0100
parents 5b929e6b3c36
children efd90f778cd2
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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34 #pragma once
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35
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36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h"
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37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h"
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38
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39 #include "Database/IDatabaseWrapper.h"
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40 #include "DicomInstanceOrigin.h"
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41
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42 #include <boost/thread.hpp>
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43 #include <boost/noncopyable.hpp>
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44
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45 namespace Orthanc
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46 {
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47 class DatabaseLookup;
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48 class ParsedDicomFile;
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49 class ServerContext;
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50
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51 class ServerIndex : public boost::noncopyable
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52 {
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53 public:
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54 typedef std::list<FileInfo> Attachments;
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap;
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56
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57 private:
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58 class Listener;
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59 class Transaction;
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60 class UnstableResourcePayload;
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61 class MainDicomTagsRegistry;
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63 bool done_;
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64 boost::mutex mutex_;
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65 boost::thread flushThread_;
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66 boost::thread unstableResourcesMonitorThread_;
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68 std::unique_ptr<Listener> listener_;
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69 IDatabaseWrapper& db_;
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_;
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72 uint64_t maximumStorageSize_;
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73 unsigned int maximumPatients_;
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_;
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76 static void FlushThread(ServerIndex* that,
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77 unsigned int threadSleep);
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79 static void UnstableResourcesMonitorThread(ServerIndex* that,
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80 unsigned int threadSleep);
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81
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82 void MainDicomTagsToJson(Json::Value& result,
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83 int64_t resourceId,
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84 ResourceType resourceType);
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85
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86 bool IsRecyclingNeeded(uint64_t instanceSize);
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87
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88 void Recycle(uint64_t instanceSize,
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89 const std::string& newPatientId);
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91 void StandaloneRecycling();
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93 void MarkAsUnstable(int64_t id,
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94 Orthanc::ResourceType type,
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95 const std::string& publicId);
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96
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97 void LogChange(int64_t internalId,
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98 ChangeType changeType,
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99 ResourceType resourceType,
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100 const std::string& publicId);
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101
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102 void SignalNewResource(ChangeType changeType,
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103 ResourceType level,
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104 const std::string& publicId,
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105 int64_t internalId);
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106
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107 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property);
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108
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109 void NormalizeLookup(std::vector<DatabaseConstraint>& target,
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110 const DatabaseLookup& source,
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111 ResourceType level) const;
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112
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113 SeriesStatus GetSeriesStatus(int64_t id,
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114 int64_t expectedNumberOfInstances);
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115
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116 public:
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117 ServerIndex(ServerContext& context,
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118 IDatabaseWrapper& database,
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119 unsigned int threadSleep);
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120
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121 ~ServerIndex();
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122
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123 void Stop();
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124
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125 uint64_t GetMaximumStorageSize() const
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126 {
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127 return maximumStorageSize_;
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128 }
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129
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130 uint64_t GetMaximumPatientCount() const
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131 {
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132 return maximumPatients_;
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133 }
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134
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135 // "size == 0" means no limit on the storage size
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136 void SetMaximumStorageSize(uint64_t size);
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137
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138 // "count == 0" means no limit on the number of patients
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139 void SetMaximumPatientCount(unsigned int count);
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140
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141 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata,
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142 const DicomMap& dicomSummary,
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143 const Attachments& attachments,
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144 const MetadataMap& metadata,
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145 const DicomInstanceOrigin& origin,
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146 bool overwrite,
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147 bool hasTransferSyntax,
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148 DicomTransferSyntax transferSyntax,
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149 bool hasPixelDataOffset,
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150 uint64_t pixelDataOffset);
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151
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152 void GetGlobalStatistics(/* out */ uint64_t& diskSize,
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153 /* out */ uint64_t& uncompressedSize,
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154 /* out */ uint64_t& countPatients,
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155 /* out */ uint64_t& countStudies,
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156 /* out */ uint64_t& countSeries,
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157 /* out */ uint64_t& countInstances);
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158
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159 private:
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160 bool LookupResource(Json::Value& result,
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161 const std::string& publicId,
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162 ResourceType expectedType);
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163
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164 public:
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165 bool LookupAttachment(FileInfo& attachment,
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166 const std::string& instanceUuid,
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167 FileContentType contentType);
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168
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169 void GetAllUuids(std::list<std::string>& target,
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170 ResourceType resourceType);
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171
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172 void GetAllUuids(std::list<std::string>& target,
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173 ResourceType resourceType,
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174 size_t since,
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175 size_t limit);
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176
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177 bool DeleteResource(Json::Value& target /* out */,
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178 const std::string& uuid,
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179 ResourceType expectedType);
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180
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181 void GetChanges(Json::Value& target,
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182 int64_t since,
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183 unsigned int maxResults);
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184
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185 void GetLastChange(Json::Value& target);
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186
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187 void LogExportedResource(const std::string& publicId,
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188 const std::string& remoteModality);
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189
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190 void GetExportedResources(Json::Value& target,
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191 int64_t since,
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192 unsigned int maxResults);
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193
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194 void GetLastExportedResource(Json::Value& target);
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195
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196 bool IsProtectedPatient(const std::string& publicId);
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197
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198 void SetProtectedPatient(const std::string& publicId,
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199 bool isProtected);
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200
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201 void GetChildren(std::list<std::string>& result,
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202 const std::string& publicId);
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203
304
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204 void GetChildInstances(std::list<std::string>& result,
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205 const std::string& publicId);
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206
306
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207 void SetMetadata(const std::string& publicId,
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208 MetadataType type,
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209 const std::string& value);
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210
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211 void DeleteMetadata(const std::string& publicId,
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212 MetadataType type);
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213
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214 private:
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215 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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216 const std::string& publicId,
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217 ResourceType expectedType);
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218
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219 public:
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220 bool LookupMetadata(std::string& target,
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221 const std::string& publicId,
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222 ResourceType expectedType,
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223 MetadataType type);
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224
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225 void ListAvailableAttachments(std::set<FileContentType>& target,
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226 const std::string& publicId,
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227 ResourceType expectedType);
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228
306
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229 bool LookupParent(std::string& target,
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230 const std::string& publicId);
310
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231
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232 uint64_t IncrementGlobalSequence(GlobalProperty sequence);
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233
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234 void LogChange(ChangeType changeType,
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235 const std::string& publicId);
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236
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237 void DeleteChanges();
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238
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239 void DeleteExportedResources();
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240
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241 void GetResourceStatistics(/* out */ ResourceType& type,
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242 /* out */ uint64_t& diskSize,
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243 /* out */ uint64_t& uncompressedSize,
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244 /* out */ unsigned int& countStudies,
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245 /* out */ unsigned int& countSeries,
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246 /* out */ unsigned int& countInstances,
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247 /* out */ uint64_t& dicomDiskSize,
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248 /* out */ uint64_t& dicomUncompressedSize,
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249 const std::string& publicId);
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250
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251 void LookupIdentifierExact(std::vector<std::string>& result,
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252 ResourceType level,
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253 const DicomTag& tag,
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254 const std::string& value);
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255
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256 StoreStatus AddAttachment(const FileInfo& attachment,
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257 const std::string& publicId);
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258
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259 void DeleteAttachment(const std::string& publicId,
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260 FileContentType type);
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261
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262 void SetGlobalProperty(GlobalProperty property,
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263 const std::string& value);
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264
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265 bool LookupGlobalProperty(std::string& value,
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266 GlobalProperty property);
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267
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268 std::string GetGlobalProperty(GlobalProperty property,
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269 const std::string& defaultValue);
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270
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271 bool GetMainDicomTags(DicomMap& result,
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272 const std::string& publicId,
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273 ResourceType expectedType,
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274 ResourceType levelOfInterest);
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275
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276 // Only applicable at the instance level
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277 bool GetAllMainDicomTags(DicomMap& result,
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278 const std::string& instancePublicId);
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279
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280 bool LookupResourceType(ResourceType& type,
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281 const std::string& publicId);
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282
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283 unsigned int GetDatabaseVersion();
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284
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285 bool LookupParent(std::string& target,
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286 const std::string& publicId,
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287 ResourceType parentType);
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288
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289 void ReconstructInstance(const ParsedDicomFile& dicom);
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290
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291 void ApplyLookupResources(std::vector<std::string>& resourcesId,
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292 std::vector<std::string>* instancesId, // Can be NULL if not needed
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293 const DatabaseLookup& lookup,
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294 ResourceType queryLevel,
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295 size_t limit);
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296
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297
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298
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299 /***
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300 ** PROTOTYPING FOR DB REFACTORING BELOW
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301 ***/
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302
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303 public:
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304 class ReadOnlyTransaction : public boost::noncopyable
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305 {
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306 protected:
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307 ServerIndex& index_;
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308
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309 public:
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310 ReadOnlyTransaction(ServerIndex& index) :
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311 index_(index)
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312 {
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313 }
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314
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315 bool LookupResource(Json::Value& result,
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316 const std::string& publicId,
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317 ResourceType expectedType)
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318 {
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319 return index_.LookupResource(result, publicId, expectedType);
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320 }
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321
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322 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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323 const std::string& publicId,
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324 ResourceType expectedType)
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325 {
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326 index_.GetAllMetadata(target, publicId, expectedType);
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327 }
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328 };
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329
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330
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331 class ReadWriteTransaction : public ReadOnlyTransaction
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332 {
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333 public:
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334 ReadWriteTransaction(ServerIndex& index) :
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335 ReadOnlyTransaction(index)
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336 {
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337 }
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338
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339 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata,
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340 const DicomMap& dicomSummary,
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341 const Attachments& attachments,
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342 const MetadataMap& metadata,
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343 const DicomInstanceOrigin& origin,
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344 bool overwrite,
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345 bool hasTransferSyntax,
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346 DicomTransferSyntax transferSyntax,
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347 bool hasPixelDataOffset,
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348 uint64_t pixelDataOffset)
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349 {
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350 return index_.Store(instanceMetadata, dicomSummary, attachments, metadata, origin,
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351 overwrite, hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset);
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352 }
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353 };
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354
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355
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356 class IReadOnlyOperations : public boost::noncopyable
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357 {
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358 public:
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359 virtual ~IReadOnlyOperations()
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360 {
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361 }
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362
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363 virtual void Apply(ReadOnlyTransaction& transaction) = 0;
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364 };
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365
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366
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367 class IReadWriteOperations : public boost::noncopyable
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368 {
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369 public:
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370 virtual ~IReadWriteOperations()
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371 {
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372 }
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373
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374 virtual void Apply(ReadWriteTransaction& transaction) = 0;
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375 };
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376
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377
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378 class ExpandResourceOperation : public ServerIndex::IReadOnlyOperations
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379 {
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380 private:
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381 Json::Value item_;
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382 bool found_;
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383 std::string resource_;
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384 ResourceType level_;
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385
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386 public:
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387 ExpandResourceOperation(const std::string& resource,
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388 ResourceType level);
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389
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390 virtual void Apply(ServerIndex::ReadOnlyTransaction& transaction) ORTHANC_OVERRIDE;
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391
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392 bool IsFound() const
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393 {
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394 return found_;
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395 }
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396
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397 const Json::Value& GetResource() const;
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398 };
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399
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400
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401 typedef void (*ReadOnlyFunction) (ReadOnlyTransaction& transaction);
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402 typedef void (*ReadWriteFunction) (ReadWriteTransaction& transaction);
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403
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404
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405 private:
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406 class ReadOnlyWrapper;
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407 class ReadWriteWrapper;
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408
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409 void ApplyInternal(IReadOnlyOperations* readOperations,
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410 IReadWriteOperations* writeOperations);
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411
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412 unsigned int maxRetries_;
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413
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414 public:
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415 void Apply(IReadOnlyOperations& operations);
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416
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417 void Apply(IReadWriteOperations& operations);
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418
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419 void Apply(ReadOnlyFunction func);
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420
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421 void Apply(ReadWriteFunction func);
0
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422 };
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423 }