Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.h @ 4567:b812a5f2cef3 db-changes
cont
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 08 Mar 2021 14:41:29 +0100 |
| parents | 3495a3d97ab6 |
| children | a3e6aa2b07b0 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 4045 | 36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" |
| 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" | |
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38 |
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39 #include "Database/IDatabaseWrapper.h" |
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40 #include "DicomInstanceOrigin.h" |
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41 |
| 0 | 42 #include <boost/thread.hpp> |
| 220 | 43 #include <boost/noncopyable.hpp> |
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44 |
| 62 | 45 namespace Orthanc |
| 0 | 46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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49 class ServerContext; |
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50 |
| 220 | 51 class ServerIndex : public boost::noncopyable |
| 0 | 52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
| 0 | 57 private: |
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58 class Listener; |
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59 class Transaction; |
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60 class UnstableResourcePayload; |
| 3027 | 61 class MainDicomTagsRegistry; |
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62 |
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63 bool done_; |
| 0 | 64 boost::mutex mutex_; |
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65 boost::thread flushThread_; |
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66 boost::thread unstableResourcesMonitorThread_; |
| 0 | 67 |
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68 std::unique_ptr<Listener> listener_; |
| 1247 | 69 IDatabaseWrapper& db_; |
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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71 |
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72 uint64_t maximumStorageSize_; |
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73 unsigned int maximumPatients_; |
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; |
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75 |
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76 static void FlushThread(ServerIndex* that, |
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77 unsigned int threadSleep); |
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78 |
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79 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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80 unsigned int threadSleep); |
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81 |
| 4554 | 82 // A transaction must be running |
| 83 static void MainDicomTagsToJson(Json::Value& result, | |
| 84 IDatabaseWrapper& db, | |
| 85 int64_t resourceId, | |
| 86 ResourceType resourceType); | |
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87 |
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88 bool IsRecyclingNeeded(uint64_t instanceSize); |
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89 |
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90 void Recycle(uint64_t instanceSize, |
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91 const std::string& newPatientId); |
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92 |
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93 void StandaloneRecycling(); |
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94 |
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95 void MarkAsUnstable(int64_t id, |
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96 Orthanc::ResourceType type, |
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97 const std::string& publicId); |
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98 |
| 1237 | 99 void LogChange(int64_t internalId, |
| 100 ChangeType changeType, | |
| 101 ResourceType resourceType, | |
| 1297 | 102 const std::string& publicId); |
| 1237 | 103 |
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104 void SignalNewResource(ChangeType changeType, |
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105 ResourceType level, |
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106 const std::string& publicId, |
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107 int64_t internalId); |
| 1237 | 108 |
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109 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
| 3027 | 110 const DatabaseLookup& source, |
| 111 ResourceType level) const; | |
| 112 | |
| 4554 | 113 // A transaction must be running |
| 114 static SeriesStatus GetSeriesStatus(IDatabaseWrapper& db, | |
| 115 int64_t id, | |
| 116 int64_t expectedNumberOfInstances); | |
| 117 | |
| 118 bool IsUnstableResource(int64_t id); | |
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| 0 | 120 public: |
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121 ServerIndex(ServerContext& context, |
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122 IDatabaseWrapper& database, |
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123 unsigned int threadSleep); |
| 0 | 124 |
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125 ~ServerIndex(); |
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126 |
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127 void Stop(); |
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128 |
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129 uint64_t GetMaximumStorageSize() const |
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130 { |
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131 return maximumStorageSize_; |
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132 } |
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133 |
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134 uint64_t GetMaximumPatientCount() const |
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135 { |
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136 return maximumPatients_; |
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137 } |
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138 |
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139 // "size == 0" means no limit on the storage size |
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140 void SetMaximumStorageSize(uint64_t size); |
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141 |
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142 // "count == 0" means no limit on the number of patients |
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143 void SetMaximumPatientCount(unsigned int count); |
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144 |
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145 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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146 const DicomMap& dicomSummary, |
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147 const Attachments& attachments, |
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148 const MetadataMap& metadata, |
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149 const DicomInstanceOrigin& origin, |
| 4499 | 150 bool overwrite, |
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151 bool hasTransferSyntax, |
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152 DicomTransferSyntax transferSyntax, |
| 4499 | 153 bool hasPixelDataOffset, |
| 154 uint64_t pixelDataOffset); | |
| 0 | 155 |
| 315 | 156 void LogChange(ChangeType changeType, |
| 157 const std::string& publicId); | |
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158 |
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159 StoreStatus AddAttachment(const FileInfo& attachment, |
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160 const std::string& publicId); |
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161 |
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162 void DeleteAttachment(const std::string& publicId, |
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163 FileContentType type); |
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164 |
| 4205 | 165 void ReconstructInstance(const ParsedDicomFile& dicom); |
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166 |
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167 |
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168 |
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169 /*** |
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170 ** PROTOTYPING FOR DB REFACTORING BELOW |
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171 ***/ |
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172 |
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173 public: |
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174 class ReadOnlyTransaction : public boost::noncopyable |
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175 { |
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176 protected: |
| 4554 | 177 IDatabaseWrapper& db_; |
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178 |
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179 public: |
| 4555 | 180 explicit ReadOnlyTransaction(IDatabaseWrapper& db) : |
| 4554 | 181 db_(db) |
| 182 { | |
| 183 } | |
| 184 | |
| 185 /** | |
| 186 * Higher-level constructions | |
| 187 **/ | |
| 188 | |
| 189 SeriesStatus GetSeriesStatus(int64_t id, | |
| 190 int64_t expectedNumberOfInstances) | |
| 191 { | |
| 192 return ServerIndex::GetSeriesStatus(db_, id, expectedNumberOfInstances); | |
| 193 } | |
| 194 | |
| 195 void MainDicomTagsToJson(Json::Value& result, | |
| 196 int64_t resourceId, | |
| 197 ResourceType resourceType) | |
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198 { |
| 4554 | 199 ServerIndex::MainDicomTagsToJson(result, db_, resourceId, resourceType); |
| 200 } | |
| 201 | |
| 202 /** | |
| 203 * Read-only methods from "IDatabaseWrapper" | |
| 204 **/ | |
| 205 | |
| 4562 | 206 void ApplyLookupResources(std::list<std::string>& resourcesId, |
| 207 std::list<std::string>* instancesId, // Can be NULL if not needed | |
| 208 const std::vector<DatabaseConstraint>& lookup, | |
| 209 ResourceType queryLevel, | |
| 210 size_t limit) | |
| 211 { | |
| 212 return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); | |
| 213 } | |
| 214 | |
| 4554 | 215 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
| 216 int64_t id) | |
| 217 { | |
| 218 db_.GetAllMetadata(target, id); | |
| 4555 | 219 } |
| 220 | |
| 221 void GetAllPublicIds(std::list<std::string>& target, | |
| 222 ResourceType resourceType) | |
| 223 { | |
| 224 return db_.GetAllPublicIds(target, resourceType); | |
| 225 } | |
| 226 | |
| 227 void GetAllPublicIds(std::list<std::string>& target, | |
| 228 ResourceType resourceType, | |
| 229 size_t since, | |
| 230 size_t limit) | |
| 231 { | |
| 232 return db_.GetAllPublicIds(target, resourceType, since, limit); | |
| 233 } | |
| 4554 | 234 |
| 4558 | 235 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
| 236 bool& done /*out*/, | |
| 237 int64_t since, | |
| 238 uint32_t maxResults) | |
| 239 { | |
| 240 db_.GetChanges(target, done, since, maxResults); | |
| 241 } | |
| 242 | |
| 4559 | 243 void GetChildrenInternalId(std::list<int64_t>& target, |
| 244 int64_t id) | |
| 245 { | |
| 246 db_.GetChildrenInternalId(target, id); | |
| 247 } | |
| 248 | |
| 4554 | 249 void GetChildrenPublicId(std::list<std::string>& target, |
| 250 int64_t id) | |
| 251 { | |
| 252 db_.GetChildrenPublicId(target, id); | |
| 253 } | |
| 254 | |
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255 unsigned int GetDatabaseVersion() |
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256 { |
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257 return db_.GetDatabaseVersion(); |
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258 } |
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259 |
| 4558 | 260 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
| 261 bool& done /*out*/, | |
| 262 int64_t since, | |
| 263 uint32_t maxResults) | |
| 264 { | |
| 265 return db_.GetExportedResources(target, done, since, maxResults); | |
| 266 } | |
| 267 | |
| 268 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) | |
| 269 { | |
| 270 db_.GetLastChange(target); | |
| 271 } | |
| 272 | |
| 273 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) | |
| 274 { | |
| 275 return db_.GetLastExportedResource(target); | |
| 276 } | |
| 277 | |
| 278 int64_t GetLastChangeIndex() | |
| 279 { | |
| 280 return db_.GetLastChangeIndex(); | |
| 281 } | |
| 282 | |
| 4554 | 283 void GetMainDicomTags(DicomMap& map, |
| 284 int64_t id) | |
| 285 { | |
| 286 db_.GetMainDicomTags(map, id); | |
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287 } |
| 4558 | 288 |
| 4559 | 289 std::string GetPublicId(int64_t resourceId) |
| 290 { | |
| 291 return db_.GetPublicId(resourceId); | |
| 292 } | |
| 293 | |
| 4558 | 294 uint64_t GetResourceCount(ResourceType resourceType) |
| 295 { | |
| 296 return db_.GetResourceCount(resourceType); | |
| 297 } | |
| 298 | |
| 4559 | 299 ResourceType GetResourceType(int64_t resourceId) |
| 300 { | |
| 301 return db_.GetResourceType(resourceId); | |
| 302 } | |
| 303 | |
| 4558 | 304 uint64_t GetTotalCompressedSize() |
| 305 { | |
| 306 return db_.GetTotalCompressedSize(); | |
| 307 } | |
| 308 | |
| 309 uint64_t GetTotalUncompressedSize() | |
| 310 { | |
| 311 return db_.GetTotalUncompressedSize(); | |
| 312 } | |
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313 |
| 4559 | 314 bool IsProtectedPatient(int64_t internalId) |
| 315 { | |
| 316 return db_.IsProtectedPatient(internalId); | |
| 317 } | |
| 318 | |
| 4560 | 319 void ListAvailableAttachments(std::set<FileContentType>& target, |
| 320 int64_t id) | |
| 321 { | |
| 322 db_.ListAvailableAttachments(target, id); | |
| 323 } | |
| 324 | |
| 4554 | 325 bool LookupAttachment(FileInfo& attachment, |
| 326 int64_t id, | |
| 327 FileContentType contentType) | |
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328 { |
| 4554 | 329 return db_.LookupAttachment(attachment, id, contentType); |
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330 } |
| 4554 | 331 |
| 4562 | 332 bool LookupGlobalProperty(std::string& target, |
| 333 GlobalProperty property) | |
| 334 { | |
| 335 return db_.LookupGlobalProperty(target, property); | |
| 336 } | |
| 337 | |
| 4560 | 338 bool LookupMetadata(std::string& target, |
| 339 int64_t id, | |
| 340 MetadataType type) | |
| 341 { | |
| 342 return db_.LookupMetadata(target, id, type); | |
| 343 } | |
| 344 | |
| 345 bool LookupParent(int64_t& parentId, | |
| 346 int64_t resourceId) | |
| 347 { | |
| 348 return db_.LookupParent(parentId, resourceId); | |
| 349 } | |
| 350 | |
| 4554 | 351 bool LookupResource(int64_t& id, |
| 352 ResourceType& type, | |
| 353 const std::string& publicId) | |
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354 { |
| 4554 | 355 return db_.LookupResource(id, type, publicId); |
| 356 } | |
| 357 | |
| 358 bool LookupResourceAndParent(int64_t& id, | |
| 359 ResourceType& type, | |
| 360 std::string& parentPublicId, | |
| 361 const std::string& publicId) | |
| 362 { | |
| 363 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); | |
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364 } |
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365 }; |
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366 |
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367 |
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368 class ReadWriteTransaction : public ReadOnlyTransaction |
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369 { |
| 4567 | 370 private: |
| 371 ServerIndex& index_; | |
| 372 | |
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373 public: |
| 4567 | 374 ReadWriteTransaction(IDatabaseWrapper& db, |
| 375 ServerIndex& index) : | |
| 376 ReadOnlyTransaction(db), | |
| 377 index_(index) // TODO - REMOVE | |
| 378 { | |
| 379 } | |
| 380 | |
| 381 void ClearChanges() | |
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382 { |
| 4567 | 383 db_.ClearChanges(); |
| 384 } | |
| 385 | |
| 386 void ClearExportedResources() | |
| 387 { | |
| 388 db_.ClearExportedResources(); | |
| 389 } | |
| 390 | |
| 391 void DeleteMetadata(int64_t id, | |
| 392 MetadataType type) | |
| 393 { | |
| 394 db_.DeleteMetadata(id, type); | |
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395 } |
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396 |
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397 void DeleteResource(int64_t id) |
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398 { |
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399 db_.DeleteResource(id); |
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400 } |
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401 |
| 4567 | 402 void LogChange(int64_t internalId, |
| 403 ChangeType changeType, | |
| 404 ResourceType resourceType, | |
| 405 const std::string& publicId) | |
| 406 { | |
| 407 index_.LogChange(internalId, changeType, resourceType, publicId); | |
| 408 } | |
| 409 | |
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410 void LogExportedResource(const ExportedResource& resource) |
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411 { |
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412 db_.LogExportedResource(resource); |
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413 } |
| 4567 | 414 |
| 415 void SetGlobalProperty(GlobalProperty property, | |
| 416 const std::string& value) | |
| 417 { | |
| 418 db_.SetGlobalProperty(property, value); | |
| 419 } | |
| 420 | |
| 421 void SetMetadata(int64_t id, | |
| 422 MetadataType type, | |
| 423 const std::string& value) | |
| 424 { | |
| 425 return db_.SetMetadata(id, type, value); | |
| 426 } | |
| 427 | |
| 428 void SetProtectedPatient(int64_t internalId, | |
| 429 bool isProtected) | |
| 430 { | |
| 431 db_.SetProtectedPatient(internalId, isProtected); | |
| 432 } | |
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433 }; |
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434 |
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435 |
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436 class IReadOnlyOperations : public boost::noncopyable |
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437 { |
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438 public: |
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439 virtual ~IReadOnlyOperations() |
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440 { |
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441 } |
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442 |
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443 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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444 }; |
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445 |
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446 |
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447 class IReadWriteOperations : public boost::noncopyable |
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448 { |
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449 public: |
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450 virtual ~IReadWriteOperations() |
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451 { |
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452 } |
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453 |
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454 virtual void Apply(ReadWriteTransaction& transaction, |
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455 Listener& listener) = 0; |
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456 }; |
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457 |
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458 private: |
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459 void ApplyInternal(IReadOnlyOperations* readOperations, |
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460 IReadWriteOperations* writeOperations); |
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461 |
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462 unsigned int maxRetries_; |
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463 |
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464 public: |
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465 void Apply(IReadOnlyOperations& operations); |
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466 |
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467 void Apply(IReadWriteOperations& operations); |
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468 |
| 4554 | 469 bool ExpandResource(Json::Value& target, |
| 470 const std::string& publicId, | |
| 471 ResourceType level); | |
| 472 | |
| 473 void GetAllMetadata(std::map<MetadataType, std::string>& target, | |
| 474 const std::string& publicId, | |
| 475 ResourceType level); | |
| 4555 | 476 |
| 477 void GetAllUuids(std::list<std::string>& target, | |
| 478 ResourceType resourceType); | |
| 479 | |
| 480 void GetAllUuids(std::list<std::string>& target, | |
| 481 ResourceType resourceType, | |
| 482 size_t since, | |
| 483 size_t limit); | |
| 484 | |
| 4558 | 485 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
| 486 /* out */ uint64_t& uncompressedSize, | |
| 487 /* out */ uint64_t& countPatients, | |
| 488 /* out */ uint64_t& countStudies, | |
| 489 /* out */ uint64_t& countSeries, | |
| 490 /* out */ uint64_t& countInstances); | |
| 491 | |
| 4555 | 492 bool LookupAttachment(FileInfo& attachment, |
| 493 const std::string& instancePublicId, | |
| 494 FileContentType contentType); | |
| 4558 | 495 |
| 496 void GetChanges(Json::Value& target, | |
| 497 int64_t since, | |
| 498 unsigned int maxResults); | |
| 499 | |
| 500 void GetLastChange(Json::Value& target); | |
| 501 | |
| 502 void GetExportedResources(Json::Value& target, | |
| 503 int64_t since, | |
| 504 unsigned int maxResults); | |
| 505 | |
| 506 void GetLastExportedResource(Json::Value& target); | |
| 507 | |
| 4559 | 508 bool IsProtectedPatient(const std::string& publicId); |
| 509 | |
| 510 void GetChildren(std::list<std::string>& result, | |
| 511 const std::string& publicId); | |
| 512 | |
| 513 void GetChildInstances(std::list<std::string>& result, | |
| 514 const std::string& publicId); | |
| 4560 | 515 |
| 516 bool LookupMetadata(std::string& target, | |
| 517 const std::string& publicId, | |
| 518 ResourceType expectedType, | |
| 519 MetadataType type); | |
| 520 | |
| 521 void ListAvailableAttachments(std::set<FileContentType>& target, | |
| 522 const std::string& publicId, | |
| 523 ResourceType expectedType); | |
| 524 | |
| 525 bool LookupParent(std::string& target, | |
| 526 const std::string& publicId); | |
| 4562 | 527 |
| 528 void GetResourceStatistics(/* out */ ResourceType& type, | |
| 529 /* out */ uint64_t& diskSize, | |
| 530 /* out */ uint64_t& uncompressedSize, | |
| 531 /* out */ unsigned int& countStudies, | |
| 532 /* out */ unsigned int& countSeries, | |
| 533 /* out */ unsigned int& countInstances, | |
| 534 /* out */ uint64_t& dicomDiskSize, | |
| 535 /* out */ uint64_t& dicomUncompressedSize, | |
| 536 const std::string& publicId); | |
| 537 | |
| 538 void LookupIdentifierExact(std::vector<std::string>& result, | |
| 539 ResourceType level, | |
| 540 const DicomTag& tag, | |
| 541 const std::string& value); | |
| 542 | |
| 543 bool LookupGlobalProperty(std::string& value, | |
| 544 GlobalProperty property); | |
| 545 | |
| 546 std::string GetGlobalProperty(GlobalProperty property, | |
| 547 const std::string& defaultValue); | |
| 548 | |
| 549 bool GetMainDicomTags(DicomMap& result, | |
| 550 const std::string& publicId, | |
| 551 ResourceType expectedType, | |
| 552 ResourceType levelOfInterest); | |
|
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553 |
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554 // Only applicable at the instance level |
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555 bool GetAllMainDicomTags(DicomMap& result, |
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556 const std::string& instancePublicId); |
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557 |
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558 bool LookupResourceType(ResourceType& type, |
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559 const std::string& publicId); |
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560 |
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561 unsigned int GetDatabaseVersion(); |
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562 |
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563 bool LookupParent(std::string& target, |
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564 const std::string& publicId, |
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565 ResourceType parentType); |
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566 |
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567 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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568 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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569 const DatabaseLookup& lookup, |
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570 ResourceType queryLevel, |
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571 size_t limit); |
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572 |
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573 bool DeleteResource(Json::Value& target /* out */, |
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574 const std::string& uuid, |
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575 ResourceType expectedType); |
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576 |
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577 void LogExportedResource(const std::string& publicId, |
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578 const std::string& remoteModality); |
| 4567 | 579 |
| 580 void SetProtectedPatient(const std::string& publicId, | |
| 581 bool isProtected); | |
| 582 | |
| 583 void SetMetadata(const std::string& publicId, | |
| 584 MetadataType type, | |
| 585 const std::string& value); | |
| 586 | |
| 587 void DeleteMetadata(const std::string& publicId, | |
| 588 MetadataType type); | |
| 589 | |
| 590 uint64_t IncrementGlobalSequence(GlobalProperty sequence); | |
| 591 | |
| 592 void DeleteChanges(); | |
| 593 | |
| 594 void DeleteExportedResources(); | |
| 595 | |
| 596 void SetGlobalProperty(GlobalProperty property, | |
| 597 const std::string& value); | |
| 0 | 598 }; |
| 599 } |