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annotate OrthancServer/Sources/ServerIndex.h @ 4559:19b1921aee06 db-changes

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 04 Mar 2021 17:59:40 +0100
parents 2f4d7ec9b993
children 929409e40008
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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34 #pragma once
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35
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36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h"
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37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h"
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38
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39 #include "Database/IDatabaseWrapper.h"
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40 #include "DicomInstanceOrigin.h"
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41
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42 #include <boost/thread.hpp>
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43 #include <boost/noncopyable.hpp>
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44
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45 namespace Orthanc
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46 {
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47 class DatabaseLookup;
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48 class ParsedDicomFile;
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49 class ServerContext;
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50
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51 class ServerIndex : public boost::noncopyable
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52 {
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53 public:
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54 typedef std::list<FileInfo> Attachments;
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap;
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56
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57 private:
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58 class Listener;
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59 class Transaction;
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60 class UnstableResourcePayload;
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61 class MainDicomTagsRegistry;
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63 bool done_;
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64 boost::mutex mutex_;
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65 boost::thread flushThread_;
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66 boost::thread unstableResourcesMonitorThread_;
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68 std::unique_ptr<Listener> listener_;
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69 IDatabaseWrapper& db_;
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_;
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72 uint64_t maximumStorageSize_;
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73 unsigned int maximumPatients_;
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_;
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76 static void FlushThread(ServerIndex* that,
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77 unsigned int threadSleep);
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78
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79 static void UnstableResourcesMonitorThread(ServerIndex* that,
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80 unsigned int threadSleep);
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81
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82 // A transaction must be running
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83 static void MainDicomTagsToJson(Json::Value& result,
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84 IDatabaseWrapper& db,
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85 int64_t resourceId,
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86 ResourceType resourceType);
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87
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88 bool IsRecyclingNeeded(uint64_t instanceSize);
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90 void Recycle(uint64_t instanceSize,
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91 const std::string& newPatientId);
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92
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93 void StandaloneRecycling();
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94
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95 void MarkAsUnstable(int64_t id,
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96 Orthanc::ResourceType type,
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97 const std::string& publicId);
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98
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99 void LogChange(int64_t internalId,
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100 ChangeType changeType,
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101 ResourceType resourceType,
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102 const std::string& publicId);
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103
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104 void SignalNewResource(ChangeType changeType,
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105 ResourceType level,
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106 const std::string& publicId,
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107 int64_t internalId);
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108
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109 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property);
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110
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111 void NormalizeLookup(std::vector<DatabaseConstraint>& target,
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112 const DatabaseLookup& source,
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113 ResourceType level) const;
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114
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115 // A transaction must be running
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116 static SeriesStatus GetSeriesStatus(IDatabaseWrapper& db,
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117 int64_t id,
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118 int64_t expectedNumberOfInstances);
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119
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120 bool IsUnstableResource(int64_t id);
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121
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122 public:
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123 ServerIndex(ServerContext& context,
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124 IDatabaseWrapper& database,
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125 unsigned int threadSleep);
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126
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127 ~ServerIndex();
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128
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129 void Stop();
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130
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131 uint64_t GetMaximumStorageSize() const
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132 {
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133 return maximumStorageSize_;
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134 }
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135
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136 uint64_t GetMaximumPatientCount() const
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137 {
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138 return maximumPatients_;
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139 }
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141 // "size == 0" means no limit on the storage size
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142 void SetMaximumStorageSize(uint64_t size);
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143
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144 // "count == 0" means no limit on the number of patients
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145 void SetMaximumPatientCount(unsigned int count);
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146
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147 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata,
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148 const DicomMap& dicomSummary,
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149 const Attachments& attachments,
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150 const MetadataMap& metadata,
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151 const DicomInstanceOrigin& origin,
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152 bool overwrite,
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153 bool hasTransferSyntax,
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154 DicomTransferSyntax transferSyntax,
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155 bool hasPixelDataOffset,
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156 uint64_t pixelDataOffset);
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157
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158 bool DeleteResource(Json::Value& target /* out */,
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159 const std::string& uuid,
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160 ResourceType expectedType);
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161
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162 void LogExportedResource(const std::string& publicId,
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163 const std::string& remoteModality);
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164
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165 void SetProtectedPatient(const std::string& publicId,
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166 bool isProtected);
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167
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168 void SetMetadata(const std::string& publicId,
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169 MetadataType type,
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170 const std::string& value);
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171
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172 void DeleteMetadata(const std::string& publicId,
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173 MetadataType type);
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174
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175 bool LookupMetadata(std::string& target,
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176 const std::string& publicId,
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177 ResourceType expectedType,
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178 MetadataType type);
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179
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180 void ListAvailableAttachments(std::set<FileContentType>& target,
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181 const std::string& publicId,
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182 ResourceType expectedType);
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183
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184 bool LookupParent(std::string& target,
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185 const std::string& publicId);
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186
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187 uint64_t IncrementGlobalSequence(GlobalProperty sequence);
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188
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189 void LogChange(ChangeType changeType,
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190 const std::string& publicId);
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191
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192 void DeleteChanges();
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193
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194 void DeleteExportedResources();
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195
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196 void GetResourceStatistics(/* out */ ResourceType& type,
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197 /* out */ uint64_t& diskSize,
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198 /* out */ uint64_t& uncompressedSize,
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199 /* out */ unsigned int& countStudies,
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200 /* out */ unsigned int& countSeries,
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201 /* out */ unsigned int& countInstances,
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202 /* out */ uint64_t& dicomDiskSize,
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203 /* out */ uint64_t& dicomUncompressedSize,
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204 const std::string& publicId);
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205
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206 void LookupIdentifierExact(std::vector<std::string>& result,
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207 ResourceType level,
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208 const DicomTag& tag,
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209 const std::string& value);
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210
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211 StoreStatus AddAttachment(const FileInfo& attachment,
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212 const std::string& publicId);
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213
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214 void DeleteAttachment(const std::string& publicId,
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215 FileContentType type);
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216
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217 void SetGlobalProperty(GlobalProperty property,
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218 const std::string& value);
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219
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220 bool LookupGlobalProperty(std::string& value,
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221 GlobalProperty property);
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222
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223 std::string GetGlobalProperty(GlobalProperty property,
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224 const std::string& defaultValue);
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225
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226 bool GetMainDicomTags(DicomMap& result,
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227 const std::string& publicId,
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228 ResourceType expectedType,
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229 ResourceType levelOfInterest);
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230
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231 // Only applicable at the instance level
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232 bool GetAllMainDicomTags(DicomMap& result,
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233 const std::string& instancePublicId);
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234
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235 bool LookupResourceType(ResourceType& type,
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236 const std::string& publicId);
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237
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238 unsigned int GetDatabaseVersion();
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239
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240 bool LookupParent(std::string& target,
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241 const std::string& publicId,
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242 ResourceType parentType);
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243
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244 void ReconstructInstance(const ParsedDicomFile& dicom);
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245
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246 void ApplyLookupResources(std::vector<std::string>& resourcesId,
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247 std::vector<std::string>* instancesId, // Can be NULL if not needed
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248 const DatabaseLookup& lookup,
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249 ResourceType queryLevel,
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250 size_t limit);
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251
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252
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253
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254 /***
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255 ** PROTOTYPING FOR DB REFACTORING BELOW
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256 ***/
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257
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258 public:
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259 class ReadOnlyTransaction : public boost::noncopyable
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260 {
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261 protected:
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262 IDatabaseWrapper& db_;
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263
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264 public:
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265 explicit ReadOnlyTransaction(IDatabaseWrapper& db) :
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266 db_(db)
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267 {
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268 }
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269
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270 /**
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271 * Higher-level constructions
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272 **/
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273
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274 SeriesStatus GetSeriesStatus(int64_t id,
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275 int64_t expectedNumberOfInstances)
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276 {
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277 return ServerIndex::GetSeriesStatus(db_, id, expectedNumberOfInstances);
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278 }
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279
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280 void MainDicomTagsToJson(Json::Value& result,
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281 int64_t resourceId,
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282 ResourceType resourceType)
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283 {
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284 ServerIndex::MainDicomTagsToJson(result, db_, resourceId, resourceType);
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285 }
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286
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287 /**
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288 * Read-only methods from "IDatabaseWrapper"
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289 **/
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290
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291 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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292 int64_t id)
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293 {
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294 db_.GetAllMetadata(target, id);
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295 }
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296
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297 void GetAllPublicIds(std::list<std::string>& target,
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298 ResourceType resourceType)
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299 {
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300 return db_.GetAllPublicIds(target, resourceType);
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301 }
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302
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303 void GetAllPublicIds(std::list<std::string>& target,
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304 ResourceType resourceType,
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305 size_t since,
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306 size_t limit)
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307 {
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308 return db_.GetAllPublicIds(target, resourceType, since, limit);
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309 }
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310
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311 void GetChanges(std::list<ServerIndexChange>& target /*out*/,
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312 bool& done /*out*/,
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313 int64_t since,
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314 uint32_t maxResults)
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315 {
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316 db_.GetChanges(target, done, since, maxResults);
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317 }
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318
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319 void GetChildrenInternalId(std::list<int64_t>& target,
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320 int64_t id)
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321 {
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322 db_.GetChildrenInternalId(target, id);
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323 }
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324
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325 void GetChildrenPublicId(std::list<std::string>& target,
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326 int64_t id)
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327 {
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328 db_.GetChildrenPublicId(target, id);
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329 }
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330
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331 void GetExportedResources(std::list<ExportedResource>& target /*out*/,
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332 bool& done /*out*/,
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333 int64_t since,
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334 uint32_t maxResults)
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335 {
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336 return db_.GetExportedResources(target, done, since, maxResults);
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337 }
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338
Sebastien Jodogne <s.jodogne@gmail.com>
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339 void GetLastChange(std::list<ServerIndexChange>& target /*out*/)
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340 {
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341 db_.GetLastChange(target);
Sebastien Jodogne <s.jodogne@gmail.com>
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342 }
Sebastien Jodogne <s.jodogne@gmail.com>
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343
Sebastien Jodogne <s.jodogne@gmail.com>
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344 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/)
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345 {
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346 return db_.GetLastExportedResource(target);
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347 }
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348
Sebastien Jodogne <s.jodogne@gmail.com>
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349 int64_t GetLastChangeIndex()
Sebastien Jodogne <s.jodogne@gmail.com>
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350 {
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351 return db_.GetLastChangeIndex();
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352 }
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353
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354 void GetMainDicomTags(DicomMap& map,
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355 int64_t id)
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356 {
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357 db_.GetMainDicomTags(map, id);
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358 }
4558
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359
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360 std::string GetPublicId(int64_t resourceId)
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361 {
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362 return db_.GetPublicId(resourceId);
Sebastien Jodogne <s.jodogne@gmail.com>
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363 }
Sebastien Jodogne <s.jodogne@gmail.com>
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364
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diff changeset
365 uint64_t GetResourceCount(ResourceType resourceType)
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diff changeset
366 {
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367 return db_.GetResourceCount(resourceType);
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
368 }
Sebastien Jodogne <s.jodogne@gmail.com>
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369
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diff changeset
370 ResourceType GetResourceType(int64_t resourceId)
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371 {
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372 return db_.GetResourceType(resourceId);
Sebastien Jodogne <s.jodogne@gmail.com>
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373 }
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374
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diff changeset
375 uint64_t GetTotalCompressedSize()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
376 {
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diff changeset
377 return db_.GetTotalCompressedSize();
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
378 }
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
379
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
380 uint64_t GetTotalUncompressedSize()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
381 {
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
382 return db_.GetTotalUncompressedSize();
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
383 }
4551
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diff changeset
384
4559
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diff changeset
385 bool IsProtectedPatient(int64_t internalId)
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386 {
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diff changeset
387 return db_.IsProtectedPatient(internalId);
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
388 }
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
389
4554
efd90f778cd2 simplification
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diff changeset
390 bool LookupAttachment(FileInfo& attachment,
efd90f778cd2 simplification
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diff changeset
391 int64_t id,
efd90f778cd2 simplification
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392 FileContentType contentType)
4551
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diff changeset
393 {
4554
efd90f778cd2 simplification
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diff changeset
394 return db_.LookupAttachment(attachment, id, contentType);
4551
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diff changeset
395 }
4554
efd90f778cd2 simplification
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diff changeset
396
efd90f778cd2 simplification
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diff changeset
397 bool LookupResource(int64_t& id,
efd90f778cd2 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
398 ResourceType& type,
efd90f778cd2 simplification
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diff changeset
399 const std::string& publicId)
4551
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diff changeset
400 {
4554
efd90f778cd2 simplification
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diff changeset
401 return db_.LookupResource(id, type, publicId);
efd90f778cd2 simplification
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diff changeset
402 }
efd90f778cd2 simplification
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parents: 4551
diff changeset
403
efd90f778cd2 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4551
diff changeset
404 bool LookupResourceAndParent(int64_t& id,
efd90f778cd2 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4551
diff changeset
405 ResourceType& type,
efd90f778cd2 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4551
diff changeset
406 std::string& parentPublicId,
efd90f778cd2 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4551
diff changeset
407 const std::string& publicId)
efd90f778cd2 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
408 {
efd90f778cd2 simplification
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diff changeset
409 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId);
4551
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diff changeset
410 }
350a22c094f2 testing replay of transactions
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diff changeset
411 };
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
412
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
413
350a22c094f2 testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
414 class ReadWriteTransaction : public ReadOnlyTransaction
350a22c094f2 testing replay of transactions
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diff changeset
415 {
350a22c094f2 testing replay of transactions
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diff changeset
416 public:
4555
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diff changeset
417 explicit ReadWriteTransaction(IDatabaseWrapper& db) :
4554
efd90f778cd2 simplification
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diff changeset
418 ReadOnlyTransaction(db)
4551
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diff changeset
419 {
350a22c094f2 testing replay of transactions
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diff changeset
420 }
350a22c094f2 testing replay of transactions
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diff changeset
421
350a22c094f2 testing replay of transactions
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diff changeset
422 };
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diff changeset
423
350a22c094f2 testing replay of transactions
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diff changeset
424
350a22c094f2 testing replay of transactions
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diff changeset
425 class IReadOnlyOperations : public boost::noncopyable
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426 {
350a22c094f2 testing replay of transactions
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diff changeset
427 public:
350a22c094f2 testing replay of transactions
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diff changeset
428 virtual ~IReadOnlyOperations()
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
429 {
350a22c094f2 testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
430 }
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
431
350a22c094f2 testing replay of transactions
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diff changeset
432 virtual void Apply(ReadOnlyTransaction& transaction) = 0;
350a22c094f2 testing replay of transactions
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diff changeset
433 };
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
434
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
435
350a22c094f2 testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
436 class IReadWriteOperations : public boost::noncopyable
350a22c094f2 testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
437 {
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
438 public:
350a22c094f2 testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
439 virtual ~IReadWriteOperations()
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
440 {
350a22c094f2 testing replay of transactions
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diff changeset
441 }
350a22c094f2 testing replay of transactions
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diff changeset
442
350a22c094f2 testing replay of transactions
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diff changeset
443 virtual void Apply(ReadWriteTransaction& transaction) = 0;
350a22c094f2 testing replay of transactions
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diff changeset
444 };
350a22c094f2 testing replay of transactions
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diff changeset
445
350a22c094f2 testing replay of transactions
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diff changeset
446
4555
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diff changeset
447 typedef void (*ReadOnlyFunction) (ReadOnlyTransaction& transaction); // TODO - Is this useful?
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
448 typedef void (*ReadWriteFunction) (ReadWriteTransaction& transaction); // TODO - Is this useful?
4551
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diff changeset
449
350a22c094f2 testing replay of transactions
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parents: 4514
diff changeset
450
350a22c094f2 testing replay of transactions
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451 private:
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452 class ReadOnlyWrapper; // TODO - Is this useful?
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453 class ReadWriteWrapper; // TODO - Is this useful?
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454
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455 void ApplyInternal(IReadOnlyOperations* readOperations,
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456 IReadWriteOperations* writeOperations);
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457
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458 unsigned int maxRetries_;
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459
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460 public:
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461 void Apply(IReadOnlyOperations& operations);
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462
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463 void Apply(IReadWriteOperations& operations);
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464
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465 void Apply(ReadOnlyFunction func);
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466
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467 void Apply(ReadWriteFunction func);
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468
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469 bool ExpandResource(Json::Value& target,
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470 const std::string& publicId,
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471 ResourceType level);
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472
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473 void GetAllMetadata(std::map<MetadataType, std::string>& target,
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474 const std::string& publicId,
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475 ResourceType level);
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476
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477 void GetAllUuids(std::list<std::string>& target,
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478 ResourceType resourceType);
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479
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480 void GetAllUuids(std::list<std::string>& target,
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481 ResourceType resourceType,
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482 size_t since,
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483 size_t limit);
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484
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485 void GetGlobalStatistics(/* out */ uint64_t& diskSize,
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486 /* out */ uint64_t& uncompressedSize,
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487 /* out */ uint64_t& countPatients,
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488 /* out */ uint64_t& countStudies,
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489 /* out */ uint64_t& countSeries,
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490 /* out */ uint64_t& countInstances);
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491
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492 bool LookupAttachment(FileInfo& attachment,
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493 const std::string& instancePublicId,
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494 FileContentType contentType);
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495
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496 void GetChanges(Json::Value& target,
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497 int64_t since,
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498 unsigned int maxResults);
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499
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500 void GetLastChange(Json::Value& target);
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501
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502 void GetExportedResources(Json::Value& target,
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503 int64_t since,
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504 unsigned int maxResults);
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505
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506 void GetLastExportedResource(Json::Value& target);
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507
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508 bool IsProtectedPatient(const std::string& publicId);
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509
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510 void GetChildren(std::list<std::string>& result,
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511 const std::string& publicId);
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512
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513 void GetChildInstances(std::list<std::string>& result,
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514 const std::string& publicId);
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515 };
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516 }