Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.h @ 4563:bb1c365f9e44 db-changes
end of refactoring read-only transactions
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 05 Mar 2021 16:11:11 +0100 |
| parents | e19f11e08226 |
| children | 3495a3d97ab6 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 4045 | 36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" |
| 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" | |
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38 |
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39 #include "Database/IDatabaseWrapper.h" |
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40 #include "DicomInstanceOrigin.h" |
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41 |
| 0 | 42 #include <boost/thread.hpp> |
| 220 | 43 #include <boost/noncopyable.hpp> |
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44 |
| 62 | 45 namespace Orthanc |
| 0 | 46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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49 class ServerContext; |
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50 |
| 220 | 51 class ServerIndex : public boost::noncopyable |
| 0 | 52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
| 0 | 57 private: |
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58 class Listener; |
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59 class Transaction; |
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60 class UnstableResourcePayload; |
| 3027 | 61 class MainDicomTagsRegistry; |
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62 |
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63 bool done_; |
| 0 | 64 boost::mutex mutex_; |
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65 boost::thread flushThread_; |
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66 boost::thread unstableResourcesMonitorThread_; |
| 0 | 67 |
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68 std::unique_ptr<Listener> listener_; |
| 1247 | 69 IDatabaseWrapper& db_; |
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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71 |
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72 uint64_t maximumStorageSize_; |
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73 unsigned int maximumPatients_; |
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; |
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75 |
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76 static void FlushThread(ServerIndex* that, |
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77 unsigned int threadSleep); |
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78 |
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79 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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80 unsigned int threadSleep); |
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81 |
| 4554 | 82 // A transaction must be running |
| 83 static void MainDicomTagsToJson(Json::Value& result, | |
| 84 IDatabaseWrapper& db, | |
| 85 int64_t resourceId, | |
| 86 ResourceType resourceType); | |
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87 |
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88 bool IsRecyclingNeeded(uint64_t instanceSize); |
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89 |
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90 void Recycle(uint64_t instanceSize, |
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91 const std::string& newPatientId); |
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92 |
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93 void StandaloneRecycling(); |
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94 |
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95 void MarkAsUnstable(int64_t id, |
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96 Orthanc::ResourceType type, |
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97 const std::string& publicId); |
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98 |
| 1237 | 99 void LogChange(int64_t internalId, |
| 100 ChangeType changeType, | |
| 101 ResourceType resourceType, | |
| 1297 | 102 const std::string& publicId); |
| 1237 | 103 |
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104 void SignalNewResource(ChangeType changeType, |
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105 ResourceType level, |
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106 const std::string& publicId, |
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107 int64_t internalId); |
| 1237 | 108 |
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109 uint64_t IncrementGlobalSequenceInternal(GlobalProperty property); |
| 1299 | 110 |
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111 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
| 3027 | 112 const DatabaseLookup& source, |
| 113 ResourceType level) const; | |
| 114 | |
| 4554 | 115 // A transaction must be running |
| 116 static SeriesStatus GetSeriesStatus(IDatabaseWrapper& db, | |
| 117 int64_t id, | |
| 118 int64_t expectedNumberOfInstances); | |
| 119 | |
| 120 bool IsUnstableResource(int64_t id); | |
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121 |
| 0 | 122 public: |
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123 ServerIndex(ServerContext& context, |
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124 IDatabaseWrapper& database, |
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125 unsigned int threadSleep); |
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127 ~ServerIndex(); |
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128 |
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129 void Stop(); |
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130 |
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131 uint64_t GetMaximumStorageSize() const |
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132 { |
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133 return maximumStorageSize_; |
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134 } |
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135 |
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136 uint64_t GetMaximumPatientCount() const |
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137 { |
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138 return maximumPatients_; |
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139 } |
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140 |
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141 // "size == 0" means no limit on the storage size |
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142 void SetMaximumStorageSize(uint64_t size); |
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143 |
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144 // "count == 0" means no limit on the number of patients |
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145 void SetMaximumPatientCount(unsigned int count); |
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146 |
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147 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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148 const DicomMap& dicomSummary, |
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149 const Attachments& attachments, |
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150 const MetadataMap& metadata, |
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151 const DicomInstanceOrigin& origin, |
| 4499 | 152 bool overwrite, |
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153 bool hasTransferSyntax, |
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154 DicomTransferSyntax transferSyntax, |
| 4499 | 155 bool hasPixelDataOffset, |
| 156 uint64_t pixelDataOffset); | |
| 0 | 157 |
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158 bool DeleteResource(Json::Value& target /* out */, |
| 212 | 159 const std::string& uuid, |
| 160 ResourceType expectedType); | |
| 0 | 161 |
| 231 | 162 void LogExportedResource(const std::string& publicId, |
| 163 const std::string& remoteModality); | |
| 164 | |
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165 void SetProtectedPatient(const std::string& publicId, |
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166 bool isProtected); |
| 304 | 167 |
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168 void SetMetadata(const std::string& publicId, |
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169 MetadataType type, |
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170 const std::string& value); |
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171 |
| 438 | 172 void DeleteMetadata(const std::string& publicId, |
| 173 MetadataType type); | |
| 174 | |
| 310 | 175 uint64_t IncrementGlobalSequence(GlobalProperty sequence); |
| 315 | 176 |
| 177 void LogChange(ChangeType changeType, | |
| 178 const std::string& publicId); | |
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179 |
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180 void DeleteChanges(); |
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181 |
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182 void DeleteExportedResources(); |
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440
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183 |
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184 StoreStatus AddAttachment(const FileInfo& attachment, |
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185 const std::string& publicId); |
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186 |
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187 void DeleteAttachment(const std::string& publicId, |
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188 FileContentType type); |
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189 |
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190 void SetGlobalProperty(GlobalProperty property, |
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191 const std::string& value); |
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192 |
| 4205 | 193 void ReconstructInstance(const ParsedDicomFile& dicom); |
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194 |
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195 |
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196 |
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197 /*** |
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198 ** PROTOTYPING FOR DB REFACTORING BELOW |
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199 ***/ |
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200 |
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201 public: |
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202 class ReadOnlyTransaction : public boost::noncopyable |
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203 { |
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204 protected: |
| 4554 | 205 IDatabaseWrapper& db_; |
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206 |
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207 public: |
| 4555 | 208 explicit ReadOnlyTransaction(IDatabaseWrapper& db) : |
| 4554 | 209 db_(db) |
| 210 { | |
| 211 } | |
| 212 | |
| 213 /** | |
| 214 * Higher-level constructions | |
| 215 **/ | |
| 216 | |
| 217 SeriesStatus GetSeriesStatus(int64_t id, | |
| 218 int64_t expectedNumberOfInstances) | |
| 219 { | |
| 220 return ServerIndex::GetSeriesStatus(db_, id, expectedNumberOfInstances); | |
| 221 } | |
| 222 | |
| 223 void MainDicomTagsToJson(Json::Value& result, | |
| 224 int64_t resourceId, | |
| 225 ResourceType resourceType) | |
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226 { |
| 4554 | 227 ServerIndex::MainDicomTagsToJson(result, db_, resourceId, resourceType); |
| 228 } | |
| 229 | |
| 230 /** | |
| 231 * Read-only methods from "IDatabaseWrapper" | |
| 232 **/ | |
| 233 | |
| 4562 | 234 void ApplyLookupResources(std::list<std::string>& resourcesId, |
| 235 std::list<std::string>* instancesId, // Can be NULL if not needed | |
| 236 const std::vector<DatabaseConstraint>& lookup, | |
| 237 ResourceType queryLevel, | |
| 238 size_t limit) | |
| 239 { | |
| 240 return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); | |
| 241 } | |
| 242 | |
| 4554 | 243 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
| 244 int64_t id) | |
| 245 { | |
| 246 db_.GetAllMetadata(target, id); | |
| 4555 | 247 } |
| 248 | |
| 249 void GetAllPublicIds(std::list<std::string>& target, | |
| 250 ResourceType resourceType) | |
| 251 { | |
| 252 return db_.GetAllPublicIds(target, resourceType); | |
| 253 } | |
| 254 | |
| 255 void GetAllPublicIds(std::list<std::string>& target, | |
| 256 ResourceType resourceType, | |
| 257 size_t since, | |
| 258 size_t limit) | |
| 259 { | |
| 260 return db_.GetAllPublicIds(target, resourceType, since, limit); | |
| 261 } | |
| 4554 | 262 |
| 4558 | 263 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
| 264 bool& done /*out*/, | |
| 265 int64_t since, | |
| 266 uint32_t maxResults) | |
| 267 { | |
| 268 db_.GetChanges(target, done, since, maxResults); | |
| 269 } | |
| 270 | |
| 4559 | 271 void GetChildrenInternalId(std::list<int64_t>& target, |
| 272 int64_t id) | |
| 273 { | |
| 274 db_.GetChildrenInternalId(target, id); | |
| 275 } | |
| 276 | |
| 4554 | 277 void GetChildrenPublicId(std::list<std::string>& target, |
| 278 int64_t id) | |
| 279 { | |
| 280 db_.GetChildrenPublicId(target, id); | |
| 281 } | |
| 282 | |
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283 unsigned int GetDatabaseVersion() |
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284 { |
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285 return db_.GetDatabaseVersion(); |
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286 } |
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287 |
| 4558 | 288 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
| 289 bool& done /*out*/, | |
| 290 int64_t since, | |
| 291 uint32_t maxResults) | |
| 292 { | |
| 293 return db_.GetExportedResources(target, done, since, maxResults); | |
| 294 } | |
| 295 | |
| 296 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) | |
| 297 { | |
| 298 db_.GetLastChange(target); | |
| 299 } | |
| 300 | |
| 301 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) | |
| 302 { | |
| 303 return db_.GetLastExportedResource(target); | |
| 304 } | |
| 305 | |
| 306 int64_t GetLastChangeIndex() | |
| 307 { | |
| 308 return db_.GetLastChangeIndex(); | |
| 309 } | |
| 310 | |
| 4554 | 311 void GetMainDicomTags(DicomMap& map, |
| 312 int64_t id) | |
| 313 { | |
| 314 db_.GetMainDicomTags(map, id); | |
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315 } |
| 4558 | 316 |
| 4559 | 317 std::string GetPublicId(int64_t resourceId) |
| 318 { | |
| 319 return db_.GetPublicId(resourceId); | |
| 320 } | |
| 321 | |
| 4558 | 322 uint64_t GetResourceCount(ResourceType resourceType) |
| 323 { | |
| 324 return db_.GetResourceCount(resourceType); | |
| 325 } | |
| 326 | |
| 4559 | 327 ResourceType GetResourceType(int64_t resourceId) |
| 328 { | |
| 329 return db_.GetResourceType(resourceId); | |
| 330 } | |
| 331 | |
| 4558 | 332 uint64_t GetTotalCompressedSize() |
| 333 { | |
| 334 return db_.GetTotalCompressedSize(); | |
| 335 } | |
| 336 | |
| 337 uint64_t GetTotalUncompressedSize() | |
| 338 { | |
| 339 return db_.GetTotalUncompressedSize(); | |
| 340 } | |
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341 |
| 4559 | 342 bool IsProtectedPatient(int64_t internalId) |
| 343 { | |
| 344 return db_.IsProtectedPatient(internalId); | |
| 345 } | |
| 346 | |
| 4560 | 347 void ListAvailableAttachments(std::set<FileContentType>& target, |
| 348 int64_t id) | |
| 349 { | |
| 350 db_.ListAvailableAttachments(target, id); | |
| 351 } | |
| 352 | |
| 4554 | 353 bool LookupAttachment(FileInfo& attachment, |
| 354 int64_t id, | |
| 355 FileContentType contentType) | |
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356 { |
| 4554 | 357 return db_.LookupAttachment(attachment, id, contentType); |
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358 } |
| 4554 | 359 |
| 4562 | 360 bool LookupGlobalProperty(std::string& target, |
| 361 GlobalProperty property) | |
| 362 { | |
| 363 return db_.LookupGlobalProperty(target, property); | |
| 364 } | |
| 365 | |
| 4560 | 366 bool LookupMetadata(std::string& target, |
| 367 int64_t id, | |
| 368 MetadataType type) | |
| 369 { | |
| 370 return db_.LookupMetadata(target, id, type); | |
| 371 } | |
| 372 | |
| 373 bool LookupParent(int64_t& parentId, | |
| 374 int64_t resourceId) | |
| 375 { | |
| 376 return db_.LookupParent(parentId, resourceId); | |
| 377 } | |
| 378 | |
| 4554 | 379 bool LookupResource(int64_t& id, |
| 380 ResourceType& type, | |
| 381 const std::string& publicId) | |
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382 { |
| 4554 | 383 return db_.LookupResource(id, type, publicId); |
| 384 } | |
| 385 | |
| 386 bool LookupResourceAndParent(int64_t& id, | |
| 387 ResourceType& type, | |
| 388 std::string& parentPublicId, | |
| 389 const std::string& publicId) | |
| 390 { | |
| 391 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); | |
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392 } |
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393 }; |
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394 |
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395 |
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396 class ReadWriteTransaction : public ReadOnlyTransaction |
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397 { |
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398 public: |
| 4555 | 399 explicit ReadWriteTransaction(IDatabaseWrapper& db) : |
| 4554 | 400 ReadOnlyTransaction(db) |
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401 { |
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402 } |
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403 |
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404 }; |
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405 |
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406 |
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407 class IReadOnlyOperations : public boost::noncopyable |
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408 { |
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409 public: |
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410 virtual ~IReadOnlyOperations() |
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411 { |
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412 } |
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413 |
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414 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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415 }; |
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416 |
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417 |
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418 class IReadWriteOperations : public boost::noncopyable |
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419 { |
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420 public: |
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421 virtual ~IReadWriteOperations() |
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422 { |
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423 } |
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424 |
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425 virtual void Apply(ReadWriteTransaction& transaction) = 0; |
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426 }; |
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427 |
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428 private: |
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429 void ApplyInternal(IReadOnlyOperations* readOperations, |
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430 IReadWriteOperations* writeOperations); |
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431 |
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432 unsigned int maxRetries_; |
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433 |
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434 public: |
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435 void Apply(IReadOnlyOperations& operations); |
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436 |
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437 void Apply(IReadWriteOperations& operations); |
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438 |
| 4554 | 439 bool ExpandResource(Json::Value& target, |
| 440 const std::string& publicId, | |
| 441 ResourceType level); | |
| 442 | |
| 443 void GetAllMetadata(std::map<MetadataType, std::string>& target, | |
| 444 const std::string& publicId, | |
| 445 ResourceType level); | |
| 4555 | 446 |
| 447 void GetAllUuids(std::list<std::string>& target, | |
| 448 ResourceType resourceType); | |
| 449 | |
| 450 void GetAllUuids(std::list<std::string>& target, | |
| 451 ResourceType resourceType, | |
| 452 size_t since, | |
| 453 size_t limit); | |
| 454 | |
| 4558 | 455 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
| 456 /* out */ uint64_t& uncompressedSize, | |
| 457 /* out */ uint64_t& countPatients, | |
| 458 /* out */ uint64_t& countStudies, | |
| 459 /* out */ uint64_t& countSeries, | |
| 460 /* out */ uint64_t& countInstances); | |
| 461 | |
| 4555 | 462 bool LookupAttachment(FileInfo& attachment, |
| 463 const std::string& instancePublicId, | |
| 464 FileContentType contentType); | |
| 4558 | 465 |
| 466 void GetChanges(Json::Value& target, | |
| 467 int64_t since, | |
| 468 unsigned int maxResults); | |
| 469 | |
| 470 void GetLastChange(Json::Value& target); | |
| 471 | |
| 472 void GetExportedResources(Json::Value& target, | |
| 473 int64_t since, | |
| 474 unsigned int maxResults); | |
| 475 | |
| 476 void GetLastExportedResource(Json::Value& target); | |
| 477 | |
| 4559 | 478 bool IsProtectedPatient(const std::string& publicId); |
| 479 | |
| 480 void GetChildren(std::list<std::string>& result, | |
| 481 const std::string& publicId); | |
| 482 | |
| 483 void GetChildInstances(std::list<std::string>& result, | |
| 484 const std::string& publicId); | |
| 4560 | 485 |
| 486 bool LookupMetadata(std::string& target, | |
| 487 const std::string& publicId, | |
| 488 ResourceType expectedType, | |
| 489 MetadataType type); | |
| 490 | |
| 491 void ListAvailableAttachments(std::set<FileContentType>& target, | |
| 492 const std::string& publicId, | |
| 493 ResourceType expectedType); | |
| 494 | |
| 495 bool LookupParent(std::string& target, | |
| 496 const std::string& publicId); | |
| 4562 | 497 |
| 498 void GetResourceStatistics(/* out */ ResourceType& type, | |
| 499 /* out */ uint64_t& diskSize, | |
| 500 /* out */ uint64_t& uncompressedSize, | |
| 501 /* out */ unsigned int& countStudies, | |
| 502 /* out */ unsigned int& countSeries, | |
| 503 /* out */ unsigned int& countInstances, | |
| 504 /* out */ uint64_t& dicomDiskSize, | |
| 505 /* out */ uint64_t& dicomUncompressedSize, | |
| 506 const std::string& publicId); | |
| 507 | |
| 508 void LookupIdentifierExact(std::vector<std::string>& result, | |
| 509 ResourceType level, | |
| 510 const DicomTag& tag, | |
| 511 const std::string& value); | |
| 512 | |
| 513 bool LookupGlobalProperty(std::string& value, | |
| 514 GlobalProperty property); | |
| 515 | |
| 516 std::string GetGlobalProperty(GlobalProperty property, | |
| 517 const std::string& defaultValue); | |
| 518 | |
| 519 bool GetMainDicomTags(DicomMap& result, | |
| 520 const std::string& publicId, | |
| 521 ResourceType expectedType, | |
| 522 ResourceType levelOfInterest); | |
|
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523 |
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524 // Only applicable at the instance level |
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525 bool GetAllMainDicomTags(DicomMap& result, |
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526 const std::string& instancePublicId); |
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527 |
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528 bool LookupResourceType(ResourceType& type, |
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529 const std::string& publicId); |
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530 |
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531 unsigned int GetDatabaseVersion(); |
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532 |
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533 bool LookupParent(std::string& target, |
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534 const std::string& publicId, |
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535 ResourceType parentType); |
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536 |
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537 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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538 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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539 const DatabaseLookup& lookup, |
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540 ResourceType queryLevel, |
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541 size_t limit); |
| 0 | 542 }; |
| 543 } |