Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.h @ 4577:a114a5db2afe db-changes
end of refactoring read-write transactions
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 09 Mar 2021 11:52:07 +0100 |
| parents | 855e43bb293c |
| children | 710748828b6a |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 4045 | 36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" |
| 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" | |
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38 |
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39 #include "Database/IDatabaseWrapper.h" |
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40 #include "DicomInstanceOrigin.h" |
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41 |
| 0 | 42 #include <boost/thread.hpp> |
| 220 | 43 #include <boost/noncopyable.hpp> |
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44 |
| 62 | 45 namespace Orthanc |
| 0 | 46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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49 class ServerContext; |
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50 |
| 220 | 51 class ServerIndex : public boost::noncopyable |
| 0 | 52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
| 0 | 57 private: |
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58 class Listener; |
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59 class Transaction; |
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60 class UnstableResourcePayload; |
| 3027 | 61 class MainDicomTagsRegistry; |
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62 |
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63 bool done_; |
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64 boost::mutex monitoringMutex_; |
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65 boost::thread flushThread_; |
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66 boost::thread unstableResourcesMonitorThread_; |
| 0 | 67 |
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68 std::unique_ptr<Listener> listener_; |
| 1247 | 69 IDatabaseWrapper& db_; |
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70 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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71 |
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72 uint64_t maximumStorageSize_; |
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73 unsigned int maximumPatients_; |
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74 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; |
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75 |
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76 static void FlushThread(ServerIndex* that, |
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77 unsigned int threadSleep); |
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78 |
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79 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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80 unsigned int threadSleep); |
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81 |
| 4554 | 82 // A transaction must be running |
| 83 static void MainDicomTagsToJson(Json::Value& result, | |
| 84 IDatabaseWrapper& db, | |
| 85 int64_t resourceId, | |
| 86 ResourceType resourceType); | |
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87 |
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88 void StandaloneRecycling(uint64_t maximumStorageSize, |
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89 unsigned int maximumPatientCount); |
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90 |
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91 void MarkAsUnstable(int64_t id, |
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92 Orthanc::ResourceType type, |
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93 const std::string& publicId); |
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94 |
| 1237 | 95 void LogChange(int64_t internalId, |
| 96 ChangeType changeType, | |
| 97 ResourceType resourceType, | |
| 1297 | 98 const std::string& publicId); |
| 1237 | 99 |
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100 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
| 3027 | 101 const DatabaseLookup& source, |
| 102 ResourceType level) const; | |
| 103 | |
| 4554 | 104 bool IsUnstableResource(int64_t id); |
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105 |
| 0 | 106 public: |
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107 ServerIndex(ServerContext& context, |
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108 IDatabaseWrapper& database, |
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109 unsigned int threadSleep); |
| 0 | 110 |
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111 ~ServerIndex(); |
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112 |
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113 void Stop(); |
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114 |
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115 // "size == 0" means no limit on the storage size |
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116 void SetMaximumStorageSize(uint64_t size); |
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117 |
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118 // "count == 0" means no limit on the number of patients |
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119 void SetMaximumPatientCount(unsigned int count); |
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| 0 | 121 |
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122 |
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123 /*** |
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124 ** PROTOTYPING FOR DB REFACTORING BELOW |
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125 ***/ |
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126 |
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127 public: |
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128 class ReadOnlyTransaction : public boost::noncopyable |
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129 { |
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130 protected: |
| 4554 | 131 IDatabaseWrapper& db_; |
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132 |
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133 public: |
| 4555 | 134 explicit ReadOnlyTransaction(IDatabaseWrapper& db) : |
| 4554 | 135 db_(db) |
| 136 { | |
| 137 } | |
| 138 | |
| 139 /** | |
| 140 * Higher-level constructions | |
| 141 **/ | |
| 142 | |
| 143 SeriesStatus GetSeriesStatus(int64_t id, | |
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144 int64_t expectedNumberOfInstances); |
| 4554 | 145 |
| 146 void MainDicomTagsToJson(Json::Value& result, | |
| 147 int64_t resourceId, | |
| 148 ResourceType resourceType) | |
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149 { |
| 4554 | 150 ServerIndex::MainDicomTagsToJson(result, db_, resourceId, resourceType); |
| 151 } | |
| 152 | |
| 153 /** | |
| 154 * Read-only methods from "IDatabaseWrapper" | |
| 155 **/ | |
| 156 | |
| 4562 | 157 void ApplyLookupResources(std::list<std::string>& resourcesId, |
| 158 std::list<std::string>* instancesId, // Can be NULL if not needed | |
| 159 const std::vector<DatabaseConstraint>& lookup, | |
| 160 ResourceType queryLevel, | |
| 161 size_t limit) | |
| 162 { | |
| 163 return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); | |
| 164 } | |
| 165 | |
| 4554 | 166 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
| 167 int64_t id) | |
| 168 { | |
| 169 db_.GetAllMetadata(target, id); | |
| 4555 | 170 } |
| 171 | |
| 172 void GetAllPublicIds(std::list<std::string>& target, | |
| 173 ResourceType resourceType) | |
| 174 { | |
| 175 return db_.GetAllPublicIds(target, resourceType); | |
| 176 } | |
| 177 | |
| 178 void GetAllPublicIds(std::list<std::string>& target, | |
| 179 ResourceType resourceType, | |
| 180 size_t since, | |
| 181 size_t limit) | |
| 182 { | |
| 183 return db_.GetAllPublicIds(target, resourceType, since, limit); | |
| 184 } | |
| 4554 | 185 |
| 4558 | 186 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
| 187 bool& done /*out*/, | |
| 188 int64_t since, | |
| 189 uint32_t maxResults) | |
| 190 { | |
| 191 db_.GetChanges(target, done, since, maxResults); | |
| 192 } | |
| 193 | |
| 4559 | 194 void GetChildrenInternalId(std::list<int64_t>& target, |
| 195 int64_t id) | |
| 196 { | |
| 197 db_.GetChildrenInternalId(target, id); | |
| 198 } | |
| 199 | |
| 4554 | 200 void GetChildrenPublicId(std::list<std::string>& target, |
| 201 int64_t id) | |
| 202 { | |
| 203 db_.GetChildrenPublicId(target, id); | |
| 204 } | |
| 205 | |
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206 unsigned int GetDatabaseVersion() |
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207 { |
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208 return db_.GetDatabaseVersion(); |
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209 } |
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210 |
| 4558 | 211 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
| 212 bool& done /*out*/, | |
| 213 int64_t since, | |
| 214 uint32_t maxResults) | |
| 215 { | |
| 216 return db_.GetExportedResources(target, done, since, maxResults); | |
| 217 } | |
| 218 | |
| 219 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) | |
| 220 { | |
| 221 db_.GetLastChange(target); | |
| 222 } | |
| 223 | |
| 224 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) | |
| 225 { | |
| 226 return db_.GetLastExportedResource(target); | |
| 227 } | |
| 228 | |
| 229 int64_t GetLastChangeIndex() | |
| 230 { | |
| 231 return db_.GetLastChangeIndex(); | |
| 232 } | |
| 233 | |
| 4554 | 234 void GetMainDicomTags(DicomMap& map, |
| 235 int64_t id) | |
| 236 { | |
| 237 db_.GetMainDicomTags(map, id); | |
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238 } |
| 4558 | 239 |
| 4559 | 240 std::string GetPublicId(int64_t resourceId) |
| 241 { | |
| 242 return db_.GetPublicId(resourceId); | |
| 243 } | |
| 244 | |
| 4558 | 245 uint64_t GetResourceCount(ResourceType resourceType) |
| 246 { | |
| 247 return db_.GetResourceCount(resourceType); | |
| 248 } | |
| 249 | |
| 4559 | 250 ResourceType GetResourceType(int64_t resourceId) |
| 251 { | |
| 252 return db_.GetResourceType(resourceId); | |
| 253 } | |
| 254 | |
| 4558 | 255 uint64_t GetTotalCompressedSize() |
| 256 { | |
| 257 return db_.GetTotalCompressedSize(); | |
| 258 } | |
| 259 | |
| 260 uint64_t GetTotalUncompressedSize() | |
| 261 { | |
| 262 return db_.GetTotalUncompressedSize(); | |
| 263 } | |
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264 |
| 4559 | 265 bool IsProtectedPatient(int64_t internalId) |
| 266 { | |
| 267 return db_.IsProtectedPatient(internalId); | |
| 268 } | |
| 269 | |
| 4560 | 270 void ListAvailableAttachments(std::set<FileContentType>& target, |
| 271 int64_t id) | |
| 272 { | |
| 273 db_.ListAvailableAttachments(target, id); | |
| 274 } | |
| 275 | |
| 4554 | 276 bool LookupAttachment(FileInfo& attachment, |
| 277 int64_t id, | |
| 278 FileContentType contentType) | |
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279 { |
| 4554 | 280 return db_.LookupAttachment(attachment, id, contentType); |
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281 } |
| 4554 | 282 |
| 4562 | 283 bool LookupGlobalProperty(std::string& target, |
| 284 GlobalProperty property) | |
| 285 { | |
| 286 return db_.LookupGlobalProperty(target, property); | |
| 287 } | |
| 288 | |
| 4560 | 289 bool LookupMetadata(std::string& target, |
| 290 int64_t id, | |
| 291 MetadataType type) | |
| 292 { | |
| 293 return db_.LookupMetadata(target, id, type); | |
| 294 } | |
| 295 | |
| 296 bool LookupParent(int64_t& parentId, | |
| 297 int64_t resourceId) | |
| 298 { | |
| 299 return db_.LookupParent(parentId, resourceId); | |
| 300 } | |
| 301 | |
| 4554 | 302 bool LookupResource(int64_t& id, |
| 303 ResourceType& type, | |
| 304 const std::string& publicId) | |
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305 { |
| 4554 | 306 return db_.LookupResource(id, type, publicId); |
| 307 } | |
| 308 | |
| 309 bool LookupResourceAndParent(int64_t& id, | |
| 310 ResourceType& type, | |
| 311 std::string& parentPublicId, | |
| 312 const std::string& publicId) | |
| 313 { | |
| 314 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); | |
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315 } |
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316 }; |
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317 |
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318 |
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319 class ReadWriteTransaction : public ReadOnlyTransaction |
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320 { |
| 4567 | 321 private: |
| 4573 | 322 Listener& listener_; |
| 323 ServerIndex& index_; // TODO - REMOVE | |
| 4567 | 324 |
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325 public: |
| 4567 | 326 ReadWriteTransaction(IDatabaseWrapper& db, |
| 4573 | 327 Listener& listener, |
| 4567 | 328 ServerIndex& index) : |
| 329 ReadOnlyTransaction(db), | |
| 4573 | 330 listener_(listener), |
| 331 index_(index) | |
| 4567 | 332 { |
| 333 } | |
| 334 | |
| 4573 | 335 Listener& GetListener() |
| 336 { | |
| 337 return listener_; | |
| 338 } | |
| 339 | |
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340 void AddAttachment(int64_t id, |
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341 const FileInfo& attachment) |
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342 { |
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343 db_.AddAttachment(id, attachment); |
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344 } |
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345 |
| 4567 | 346 void ClearChanges() |
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347 { |
| 4567 | 348 db_.ClearChanges(); |
| 349 } | |
| 350 | |
| 351 void ClearExportedResources() | |
| 352 { | |
| 353 db_.ClearExportedResources(); | |
| 354 } | |
| 355 | |
| 4574 | 356 void ClearMainDicomTags(int64_t id) |
| 357 { | |
| 358 return db_.ClearMainDicomTags(id); | |
| 359 } | |
| 360 | |
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361 bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */ |
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362 int64_t& instanceId, /* out */ |
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363 const std::string& patient, |
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364 const std::string& study, |
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365 const std::string& series, |
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366 const std::string& instance) |
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367 { |
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368 return db_.CreateInstance(result, instanceId, patient, study, series, instance); |
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369 } |
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370 |
| 4568 | 371 void DeleteAttachment(int64_t id, |
| 372 FileContentType attachment) | |
| 373 { | |
| 374 return db_.DeleteAttachment(id, attachment); | |
| 375 } | |
| 376 | |
| 4567 | 377 void DeleteMetadata(int64_t id, |
| 378 MetadataType type) | |
| 379 { | |
| 380 db_.DeleteMetadata(id, type); | |
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381 } |
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382 |
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383 void DeleteResource(int64_t id) |
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384 { |
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385 db_.DeleteResource(id); |
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386 } |
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387 |
| 4567 | 388 void LogChange(int64_t internalId, |
| 389 ChangeType changeType, | |
| 390 ResourceType resourceType, | |
| 391 const std::string& publicId) | |
| 392 { | |
| 393 index_.LogChange(internalId, changeType, resourceType, publicId); | |
| 394 } | |
| 395 | |
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396 void LogExportedResource(const ExportedResource& resource) |
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397 { |
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398 db_.LogExportedResource(resource); |
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399 } |
| 4567 | 400 |
| 401 void SetGlobalProperty(GlobalProperty property, | |
| 402 const std::string& value) | |
| 403 { | |
| 404 db_.SetGlobalProperty(property, value); | |
| 405 } | |
| 406 | |
| 407 void SetMetadata(int64_t id, | |
| 408 MetadataType type, | |
| 409 const std::string& value) | |
| 410 { | |
| 411 return db_.SetMetadata(id, type, value); | |
| 412 } | |
| 413 | |
| 414 void SetProtectedPatient(int64_t internalId, | |
| 415 bool isProtected) | |
| 416 { | |
| 417 db_.SetProtectedPatient(internalId, isProtected); | |
| 418 } | |
| 4574 | 419 |
| 420 void SetResourcesContent(const ResourcesContent& content) | |
| 421 { | |
| 422 db_.SetResourcesContent(content); | |
| 423 } | |
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424 |
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425 void Recycle(uint64_t maximumStorageSize, |
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426 unsigned int maximumPatients, |
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427 uint64_t addedInstanceSize, |
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428 const std::string& newPatientId); |
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429 }; |
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430 |
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431 |
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432 class IReadOnlyOperations : public boost::noncopyable |
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433 { |
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434 public: |
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435 virtual ~IReadOnlyOperations() |
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436 { |
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437 } |
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438 |
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439 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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440 }; |
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441 |
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442 |
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443 class IReadWriteOperations : public boost::noncopyable |
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444 { |
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445 public: |
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446 virtual ~IReadWriteOperations() |
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447 { |
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448 } |
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449 |
| 4573 | 450 virtual void Apply(ReadWriteTransaction& transaction) = 0; |
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451 }; |
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452 |
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453 private: |
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454 void ApplyInternal(IReadOnlyOperations* readOperations, |
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455 IReadWriteOperations* writeOperations); |
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456 |
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457 unsigned int maxRetries_; |
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458 |
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459 public: |
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460 void Apply(IReadOnlyOperations& operations); |
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461 |
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462 void Apply(IReadWriteOperations& operations); |
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463 |
| 4554 | 464 bool ExpandResource(Json::Value& target, |
| 465 const std::string& publicId, | |
| 466 ResourceType level); | |
| 467 | |
| 468 void GetAllMetadata(std::map<MetadataType, std::string>& target, | |
| 469 const std::string& publicId, | |
| 470 ResourceType level); | |
| 4555 | 471 |
| 472 void GetAllUuids(std::list<std::string>& target, | |
| 473 ResourceType resourceType); | |
| 474 | |
| 475 void GetAllUuids(std::list<std::string>& target, | |
| 476 ResourceType resourceType, | |
| 477 size_t since, | |
| 478 size_t limit); | |
| 479 | |
| 4558 | 480 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
| 481 /* out */ uint64_t& uncompressedSize, | |
| 482 /* out */ uint64_t& countPatients, | |
| 483 /* out */ uint64_t& countStudies, | |
| 484 /* out */ uint64_t& countSeries, | |
| 485 /* out */ uint64_t& countInstances); | |
| 486 | |
| 4555 | 487 bool LookupAttachment(FileInfo& attachment, |
| 488 const std::string& instancePublicId, | |
| 489 FileContentType contentType); | |
| 4558 | 490 |
| 491 void GetChanges(Json::Value& target, | |
| 492 int64_t since, | |
| 493 unsigned int maxResults); | |
| 494 | |
| 495 void GetLastChange(Json::Value& target); | |
| 496 | |
| 497 void GetExportedResources(Json::Value& target, | |
| 498 int64_t since, | |
| 499 unsigned int maxResults); | |
| 500 | |
| 501 void GetLastExportedResource(Json::Value& target); | |
| 502 | |
| 4559 | 503 bool IsProtectedPatient(const std::string& publicId); |
| 504 | |
| 505 void GetChildren(std::list<std::string>& result, | |
| 506 const std::string& publicId); | |
| 507 | |
| 508 void GetChildInstances(std::list<std::string>& result, | |
| 509 const std::string& publicId); | |
| 4560 | 510 |
| 511 bool LookupMetadata(std::string& target, | |
| 512 const std::string& publicId, | |
| 513 ResourceType expectedType, | |
| 514 MetadataType type); | |
| 515 | |
| 516 void ListAvailableAttachments(std::set<FileContentType>& target, | |
| 517 const std::string& publicId, | |
| 518 ResourceType expectedType); | |
| 519 | |
| 520 bool LookupParent(std::string& target, | |
| 521 const std::string& publicId); | |
| 4562 | 522 |
| 523 void GetResourceStatistics(/* out */ ResourceType& type, | |
| 524 /* out */ uint64_t& diskSize, | |
| 525 /* out */ uint64_t& uncompressedSize, | |
| 526 /* out */ unsigned int& countStudies, | |
| 527 /* out */ unsigned int& countSeries, | |
| 528 /* out */ unsigned int& countInstances, | |
| 529 /* out */ uint64_t& dicomDiskSize, | |
| 530 /* out */ uint64_t& dicomUncompressedSize, | |
| 531 const std::string& publicId); | |
| 532 | |
| 533 void LookupIdentifierExact(std::vector<std::string>& result, | |
| 534 ResourceType level, | |
| 535 const DicomTag& tag, | |
| 536 const std::string& value); | |
| 537 | |
| 538 bool LookupGlobalProperty(std::string& value, | |
| 539 GlobalProperty property); | |
| 540 | |
| 541 std::string GetGlobalProperty(GlobalProperty property, | |
| 542 const std::string& defaultValue); | |
| 543 | |
| 544 bool GetMainDicomTags(DicomMap& result, | |
| 545 const std::string& publicId, | |
| 546 ResourceType expectedType, | |
| 547 ResourceType levelOfInterest); | |
|
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548 |
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549 // Only applicable at the instance level |
|
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550 bool GetAllMainDicomTags(DicomMap& result, |
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551 const std::string& instancePublicId); |
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552 |
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553 bool LookupResourceType(ResourceType& type, |
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554 const std::string& publicId); |
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555 |
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556 unsigned int GetDatabaseVersion(); |
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557 |
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558 bool LookupParent(std::string& target, |
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559 const std::string& publicId, |
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560 ResourceType parentType); |
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561 |
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562 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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563 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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564 const DatabaseLookup& lookup, |
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565 ResourceType queryLevel, |
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566 size_t limit); |
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567 |
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568 bool DeleteResource(Json::Value& target /* out */, |
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569 const std::string& uuid, |
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570 ResourceType expectedType); |
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571 |
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572 void LogExportedResource(const std::string& publicId, |
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573 const std::string& remoteModality); |
| 4567 | 574 |
| 575 void SetProtectedPatient(const std::string& publicId, | |
| 576 bool isProtected); | |
| 577 | |
| 578 void SetMetadata(const std::string& publicId, | |
| 579 MetadataType type, | |
| 580 const std::string& value); | |
| 581 | |
| 582 void DeleteMetadata(const std::string& publicId, | |
| 583 MetadataType type); | |
| 584 | |
| 585 uint64_t IncrementGlobalSequence(GlobalProperty sequence); | |
| 586 | |
| 587 void DeleteChanges(); | |
| 588 | |
| 589 void DeleteExportedResources(); | |
| 590 | |
| 591 void SetGlobalProperty(GlobalProperty property, | |
| 592 const std::string& value); | |
| 4568 | 593 |
| 594 void DeleteAttachment(const std::string& publicId, | |
| 595 FileContentType type); | |
| 596 | |
| 597 void LogChange(ChangeType changeType, | |
| 598 const std::string& publicId); | |
| 4574 | 599 |
| 600 void ReconstructInstance(const ParsedDicomFile& dicom); | |
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601 |
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602 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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603 const DicomMap& dicomSummary, |
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604 const Attachments& attachments, |
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605 const MetadataMap& metadata, |
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606 const DicomInstanceOrigin& origin, |
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607 bool overwrite, |
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608 bool hasTransferSyntax, |
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609 DicomTransferSyntax transferSyntax, |
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610 bool hasPixelDataOffset, |
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611 uint64_t pixelDataOffset); |
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612 |
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613 StoreStatus AddAttachment(const FileInfo& attachment, |
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614 const std::string& publicId); |
| 0 | 615 }; |
| 616 } |