Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancRestApi/OrthancRestResources.cpp @ 5200:f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Wed, 29 Mar 2023 11:23:37 +0200 |
| parents | 0ea402b4d901 |
| children | d0f7c742d397 |
| rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU General Public License |
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "../PrecompiledHeadersServer.h" |
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24 #include "OrthancRestApi.h" |
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25 |
| 4045 | 26 #include "../../../OrthancFramework/Sources/Compression/GzipCompressor.h" |
| 27 #include "../../../OrthancFramework/Sources/DicomFormat/DicomImageInformation.h" | |
| 28 #include "../../../OrthancFramework/Sources/DicomParsing/DicomWebJsonVisitor.h" | |
| 29 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 30 #include "../../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" | |
| 31 #include "../../../OrthancFramework/Sources/HttpServer/HttpContentNegociation.h" | |
| 32 #include "../../../OrthancFramework/Sources/Images/Image.h" | |
| 33 #include "../../../OrthancFramework/Sources/Images/ImageProcessing.h" | |
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34 #include "../../../OrthancFramework/Sources/Images/NumpyWriter.h" |
| 4045 | 35 #include "../../../OrthancFramework/Sources/Logging.h" |
| 36 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h" | |
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37 #include "../../../OrthancFramework/Sources/SerializationToolbox.h" |
| 4045 | 38 |
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39 #include "../OrthancConfiguration.h" |
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40 #include "../Search/DatabaseLookup.h" |
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41 #include "../ServerContext.h" |
| 2131 | 42 #include "../ServerToolbox.h" |
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43 #include "../SliceOrdering.h" |
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44 |
| 3687 | 45 // This "include" is mandatory for Release builds using Linux Standard Base |
| 46 #include <boost/math/special_functions/round.hpp> | |
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47 #include <boost/shared_ptr.hpp> |
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48 |
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49 /** |
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50 * This semaphore is used to limit the number of concurrent HTTP |
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51 * requests on CPU-intensive routes of the REST API, in order to |
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52 * prevent exhaustion of resources (new in Orthanc 1.7.0). |
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53 **/ |
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54 static Orthanc::Semaphore throttlingSemaphore_(4); // TODO => PARAMETER? |
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55 |
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56 |
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57 static const std::string CHECK_REVISIONS = "CheckRevisions"; |
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58 |
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59 static const char* const IGNORE_LENGTH = "ignore-length"; |
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60 static const char* const RECONSTRUCT_FILES = "ReconstructFiles"; |
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61 |
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62 |
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63 namespace Orthanc |
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64 { |
| 4415 | 65 static std::string GetDocumentationSampleResource(ResourceType type) |
| 66 { | |
| 67 switch (type) | |
| 68 { | |
| 69 case Orthanc::ResourceType_Instance: | |
| 70 return "https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2"; | |
| 71 break; | |
| 72 | |
| 73 case Orthanc::ResourceType_Series: | |
| 74 return "https://demo.orthanc-server.com/series/37836232-d13a2350-fa1dedc5-962b31aa-010f8e52"; | |
| 75 break; | |
| 76 | |
| 77 case Orthanc::ResourceType_Study: | |
| 78 return "https://demo.orthanc-server.com/studies/27f7126f-4f66fb14-03f4081b-f9341db2-53925988"; | |
| 79 break; | |
| 80 | |
| 81 case Orthanc::ResourceType_Patient: | |
| 82 return "https://demo.orthanc-server.com/patients/46e6332c-677825b6-202fcf7c-f787bc5f-7b07c382"; | |
| 83 break; | |
| 84 | |
| 85 default: | |
| 86 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 87 } | |
| 88 } | |
| 89 | |
| 90 | |
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91 static void AnswerDicomAsJson(RestApiCall& call, |
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92 const Json::Value& dicom, |
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93 DicomToJsonFormat mode) |
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94 { |
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95 if (mode != DicomToJsonFormat_Full) |
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96 { |
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97 Json::Value simplified; |
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98 Toolbox::SimplifyDicomAsJson(simplified, dicom, mode); |
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99 call.GetOutput().AnswerJson(simplified); |
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100 } |
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101 else |
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102 { |
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103 call.GetOutput().AnswerJson(dicom); |
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104 } |
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105 } |
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106 |
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107 |
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108 static void ParseSetOfTags(std::set<DicomTag>& target, |
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109 const RestApiGetCall& call, |
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110 const std::string& argument) |
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111 { |
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112 target.clear(); |
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113 |
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114 if (call.HasArgument(argument)) |
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115 { |
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116 std::vector<std::string> tags; |
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117 Toolbox::TokenizeString(tags, call.GetArgument(argument, ""), ','); |
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118 |
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119 for (size_t i = 0; i < tags.size(); i++) |
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120 { |
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121 target.insert(FromDcmtkBridge::ParseTag(tags[i])); |
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122 } |
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123 } |
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124 } |
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125 |
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126 |
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127 // List all the patients, studies, series or instances ---------------------- |
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128 |
| 1354 | 129 static void AnswerListOfResources(RestApiOutput& output, |
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130 ServerContext& context, |
| 1354 | 131 const std::list<std::string>& resources, |
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132 const std::map<std::string, std::string>& instancesIds, // optional: the id of an instance for each found resource. |
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133 const std::map<std::string, boost::shared_ptr<DicomMap> >& resourcesMainDicomTags, // optional: all tags read from DB for a resource (current level and upper levels) |
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134 const std::map<std::string, boost::shared_ptr<Json::Value> >& resourcesDicomAsJson, // optional: the dicom-as-json for each resource |
| 1354 | 135 ResourceType level, |
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136 bool expand, |
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137 DicomToJsonFormat format, |
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138 const std::set<DicomTag>& requestedTags, |
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139 bool allowStorageAccess) |
| 1354 | 140 { |
| 141 Json::Value answer = Json::arrayValue; | |
| 142 | |
| 143 for (std::list<std::string>::const_iterator | |
| 1384 | 144 resource = resources.begin(); resource != resources.end(); ++resource) |
| 1354 | 145 { |
| 146 if (expand) | |
| 147 { | |
| 4554 | 148 Json::Value expanded; |
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149 |
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150 std::map<std::string, std::string>::const_iterator instanceId = instancesIds.find(*resource); |
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151 if (instanceId != instancesIds.end()) // if it is found in instancesIds, it is also in resourcesDicomAsJson and mainDicomTags |
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152 { |
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153 // reuse data already collected before (e.g during lookup) |
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154 std::map<std::string, boost::shared_ptr<DicomMap> >::const_iterator mainDicomTags = resourcesMainDicomTags.find(*resource); |
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155 std::map<std::string, boost::shared_ptr<Json::Value> >::const_iterator dicomAsJson = resourcesDicomAsJson.find(*resource); |
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156 |
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157 context.ExpandResource(expanded, *resource, |
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158 *(mainDicomTags->second.get()), |
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159 instanceId->second, |
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160 dicomAsJson->second.get(), |
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161 level, format, requestedTags, allowStorageAccess); |
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162 } |
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163 else |
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164 { |
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165 context.ExpandResource(expanded, *resource, level, format, requestedTags, allowStorageAccess); |
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166 } |
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167 |
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168 if (expanded.type() == Json::objectValue) |
| 1354 | 169 { |
| 4554 | 170 answer.append(expanded); |
| 1354 | 171 } |
| 172 } | |
| 173 else | |
| 174 { | |
| 175 answer.append(*resource); | |
| 176 } | |
| 177 } | |
| 178 | |
| 179 output.AnswerJson(answer); | |
| 180 } | |
| 181 | |
| 182 | |
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183 static void AnswerListOfResources(RestApiOutput& output, |
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184 ServerContext& context, |
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185 const std::list<std::string>& resources, |
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186 ResourceType level, |
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187 bool expand, |
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188 DicomToJsonFormat format, |
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189 const std::set<DicomTag>& requestedTags, |
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190 bool allowStorageAccess) |
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191 { |
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192 std::map<std::string, std::string> unusedInstancesIds; |
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193 std::map<std::string, boost::shared_ptr<DicomMap> > unusedResourcesMainDicomTags; |
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194 std::map<std::string, boost::shared_ptr<Json::Value> > unusedResourcesDicomAsJson; |
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195 |
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196 AnswerListOfResources(output, context, resources, unusedInstancesIds, unusedResourcesMainDicomTags, unusedResourcesDicomAsJson, level, expand, format, requestedTags, allowStorageAccess); |
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197 } |
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198 |
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199 |
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200 template <enum ResourceType resourceType> |
| 974 | 201 static void ListResources(RestApiGetCall& call) |
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202 { |
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203 if (call.IsDocumentation()) |
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204 { |
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205 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
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206 OrthancRestApi::DocumentRequestedTags(call); |
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207 |
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208 const std::string resources = GetResourceTypeText(resourceType, true /* plural */, false /* lower case */); |
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209 call.GetDocumentation() |
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210 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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211 .SetSummary("List the available " + resources) |
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212 .SetDescription("List the Orthanc identifiers of all the available DICOM " + resources) |
| 4403 | 213 .SetHttpGetArgument("limit", RestApiCallDocumentation::Type_Number, "Limit the number of results", false) |
| 214 .SetHttpGetArgument("since", RestApiCallDocumentation::Type_Number, "Show only the resources since the provided index", false) | |
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215 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, |
| 4403 | 216 "If present, retrieve detailed information about the individual " + resources, false) |
| 4404 | 217 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " |
| 218 "about the reported " + resources + " (if `expand` argument is provided)") | |
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219 .SetHttpGetSample("https://demo.orthanc-server.com/" + resources + "?since=0&limit=2", true); |
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220 return; |
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221 } |
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222 |
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223 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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224 ServerContext& context = OrthancRestApi::GetContext(call); |
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225 |
| 1354 | 226 std::list<std::string> result; |
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227 |
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228 std::set<DicomTag> requestedTags; |
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229 OrthancRestApi::GetRequestedTags(requestedTags, call); |
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230 |
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231 if (call.HasArgument("limit") || |
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232 call.HasArgument("since")) |
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233 { |
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234 if (!call.HasArgument("limit")) |
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235 { |
| 2955 | 236 throw OrthancException(ErrorCode_BadRequest, |
| 237 "Missing \"limit\" argument for GET request against: " + | |
| 238 call.FlattenUri()); | |
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239 } |
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240 |
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241 if (!call.HasArgument("since")) |
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242 { |
| 2955 | 243 throw OrthancException(ErrorCode_BadRequest, |
| 244 "Missing \"since\" argument for GET request against: " + | |
| 245 call.FlattenUri()); | |
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246 } |
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247 |
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248 size_t since = boost::lexical_cast<size_t>(call.GetArgument("since", "")); |
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249 size_t limit = boost::lexical_cast<size_t>(call.GetArgument("limit", "")); |
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250 index.GetAllUuids(result, resourceType, since, limit); |
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251 } |
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252 else |
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253 { |
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254 index.GetAllUuids(result, resourceType); |
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255 } |
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256 |
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257 AnswerListOfResources(call.GetOutput(), context, result, resourceType, call.HasArgument("expand"), |
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258 OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human), |
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259 requestedTags, |
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260 true /* allowStorageAccess */); |
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261 } |
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262 |
| 4409 | 263 |
| 264 | |
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265 template <enum ResourceType resourceType> |
| 974 | 266 static void GetSingleResource(RestApiGetCall& call) |
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267 { |
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268 if (call.IsDocumentation()) |
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269 { |
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270 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
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271 OrthancRestApi::DocumentRequestedTags(call); |
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272 |
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273 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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274 call.GetDocumentation() |
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275 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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276 .SetSummary("Get information about some " + resource) |
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277 .SetDescription("Get detailed information about the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 278 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 4409 | 279 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
| 280 .SetHttpGetSample(GetDocumentationSampleResource(resourceType), true); | |
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281 return; |
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282 } |
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283 |
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284 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
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285 |
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286 std::set<DicomTag> requestedTags; |
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287 OrthancRestApi::GetRequestedTags(requestedTags, call); |
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288 |
| 4554 | 289 Json::Value json; |
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290 if (OrthancRestApi::GetContext(call).ExpandResource( |
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291 json, call.GetUriComponent("id", ""), resourceType, format, requestedTags, true /* allowStorageAccess */)) |
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292 { |
| 4554 | 293 call.GetOutput().AnswerJson(json); |
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294 } |
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295 } |
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296 |
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297 template <enum ResourceType resourceType> |
| 974 | 298 static void DeleteSingleResource(RestApiDeleteCall& call) |
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299 { |
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300 if (call.IsDocumentation()) |
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301 { |
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302 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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303 call.GetDocumentation() |
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304 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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305 .SetSummary("Delete some " + resource) |
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306 .SetDescription("Delete the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 307 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); |
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308 return; |
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309 } |
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310 |
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311 Json::Value remainingAncestor; |
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312 if (OrthancRestApi::GetContext(call).DeleteResource(remainingAncestor, call.GetUriComponent("id", ""), resourceType)) |
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313 { |
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314 call.GetOutput().AnswerJson(remainingAncestor); |
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315 } |
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316 } |
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317 |
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318 |
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319 // Get information about a single patient ----------------------------------- |
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320 |
| 974 | 321 static void IsProtectedPatient(RestApiGetCall& call) |
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322 { |
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323 if (call.IsDocumentation()) |
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324 { |
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325 call.GetDocumentation() |
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326 .SetTag("Patients") |
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327 .SetSummary("Is the patient protected against recycling?") |
| 4404 | 328 .SetUriArgument("id", "Orthanc identifier of the patient of interest") |
| 4403 | 329 .AddAnswerType(MimeType_PlainText, "`1` if protected, `0` if not protected"); |
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330 return; |
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331 } |
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332 |
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333 std::string publicId = call.GetUriComponent("id", ""); |
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334 bool isProtected = OrthancRestApi::GetIndex(call).IsProtectedPatient(publicId); |
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335 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", MimeType_PlainText); |
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336 } |
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337 |
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338 |
| 974 | 339 static void SetPatientProtection(RestApiPutCall& call) |
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340 { |
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341 if (call.IsDocumentation()) |
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342 { |
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343 call.GetDocumentation() |
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344 .SetTag("Patients") |
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345 .SetSummary("Protect one patient against recycling") |
| 4403 | 346 .SetDescription("Check out configuration options `MaximumStorageSize` and `MaximumPatientCount`") |
| 4404 | 347 .SetUriArgument("id", "Orthanc identifier of the patient of interest"); |
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348 return; |
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349 } |
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350 |
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351 ServerContext& context = OrthancRestApi::GetContext(call); |
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352 |
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353 std::string publicId = call.GetUriComponent("id", ""); |
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354 |
|
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355 context.GetIndex().SetProtectedPatient(publicId, call.ParseBooleanBody()); |
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356 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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357 } |
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358 |
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359 |
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360 // Get information about a single instance ---------------------------------- |
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361 |
| 974 | 362 static void GetInstanceFile(RestApiGetCall& call) |
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363 { |
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364 if (call.IsDocumentation()) |
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365 { |
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366 call.GetDocumentation() |
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367 .SetTag("Instances") |
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368 .SetSummary("Download DICOM") |
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369 .SetDescription("Download one DICOM instance") |
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370 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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371 .SetHttpHeader("Accept", "This HTTP header can be set to retrieve the DICOM instance in DICOMweb format") |
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372 .AddAnswerType(MimeType_Dicom, "The DICOM instance") |
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373 .AddAnswerType(MimeType_DicomWebJson, "The DICOM instance, in DICOMweb JSON format") |
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374 .AddAnswerType(MimeType_DicomWebXml, "The DICOM instance, in DICOMweb XML format"); |
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375 return; |
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376 } |
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377 |
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378 ServerContext& context = OrthancRestApi::GetContext(call); |
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379 |
|
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380 std::string publicId = call.GetUriComponent("id", ""); |
|
3203
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381 |
|
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382 HttpToolbox::Arguments::const_iterator accept = call.GetHttpHeaders().find("accept"); |
|
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383 if (accept != call.GetHttpHeaders().end()) |
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384 { |
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385 // New in Orthanc 1.5.4 |
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386 try |
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387 { |
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388 MimeType mime = StringToMimeType(accept->second.c_str()); |
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389 |
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390 if (mime == MimeType_DicomWebJson || |
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391 mime == MimeType_DicomWebXml) |
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392 { |
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393 DicomWebJsonVisitor visitor; |
|
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394 |
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395 { |
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396 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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397 locker.GetDicom().Apply(visitor); |
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398 } |
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399 |
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400 if (mime == MimeType_DicomWebJson) |
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401 { |
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402 std::string s = visitor.GetResult().toStyledString(); |
|
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403 call.GetOutput().AnswerBuffer(s, MimeType_DicomWebJson); |
|
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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404 } |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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405 else |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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406 { |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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407 std::string xml; |
|
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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|
408 visitor.FormatXml(xml); |
|
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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409 call.GetOutput().AnswerBuffer(xml, MimeType_DicomWebXml); |
|
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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410 } |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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411 |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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412 return; |
|
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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413 } |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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414 } |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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415 catch (OrthancException&) |
|
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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416 { |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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417 } |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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418 } |
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URI "/instances/.../file" can return DICOMweb JSON or XML, depending on Accept header
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419 |
|
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optimization for access to attachments
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420 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_Dicom); |
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421 } |
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422 |
|
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changeset
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423 |
| 974 | 424 static void ExportInstanceFile(RestApiPostCall& call) |
|
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diff
changeset
|
425 { |
| 4421 | 426 if (call.IsDocumentation()) |
| 427 { | |
| 428 call.GetDocumentation() | |
| 429 .SetTag("Instances") | |
| 430 .SetSummary("Write DICOM onto filesystem") | |
|
5200
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New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
|
431 .SetDescription("Write the DICOM file onto the filesystem where Orthanc is running. This is insecure for " |
|
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New configuration option 'RestApiWriteToFileSystemEnabled'
Alain Mazy <am@osimis.io>
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diff
changeset
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432 "Orthanc servers that are remotely accessible since one could overwrite any system file. " |
|
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New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
|
433 "Since Orthanc 1.12.0, this route is disabled by default and can be enabled thanks to " |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
Alain Mazy <am@osimis.io>
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diff
changeset
|
434 "the `RestApiWriteToFileSystemEnabled` configuration.") |
|
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New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
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435 .AddRequestType(MimeType_PlainText, "The Lua script to be executed") |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
|
436 |
| 4421 | 437 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
| 438 .AddRequestType(MimeType_PlainText, "Target path on the filesystem"); | |
| 439 return; | |
| 440 } | |
| 441 | |
|
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442 ServerContext& context = OrthancRestApi::GetContext(call); |
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diff
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443 |
|
5200
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New configuration option 'RestApiWriteToFileSystemEnabled'
Alain Mazy <am@osimis.io>
parents:
5185
diff
changeset
|
444 if (!context.IsRestApiWriteToFileSystemEnabled()) |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
|
445 { |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
|
446 LOG(ERROR) << "The URI /instances/../export is disallowed for security, " |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
447 << "check your configuration option `RestApiWriteToFileSystemEnabled`"; |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
|
448 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
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parents:
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diff
changeset
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449 return; |
|
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parents:
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diff
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|
450 } |
|
f8f1c4a9a216
New configuration option 'RestApiWriteToFileSystemEnabled'
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diff
changeset
|
451 |
|
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parents:
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|
452 std::string publicId = call.GetUriComponent("id", ""); |
|
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refactoring of OrthancRestApi
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453 |
|
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diff
changeset
|
454 std::string dicom; |
| 2124 | 455 context.ReadDicom(dicom, publicId); |
|
751
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parents:
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456 |
|
1446
8dc80ba768aa
refactoring: IHttpHandler does not use std::string to hold the request body
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parents:
1437
diff
changeset
|
457 std::string target; |
|
8dc80ba768aa
refactoring: IHttpHandler does not use std::string to hold the request body
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parents:
1437
diff
changeset
|
458 call.BodyToString(target); |
| 2140 | 459 SystemToolbox::WriteFile(dicom, target); |
|
751
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refactoring of OrthancRestApi
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parents:
diff
changeset
|
460 |
|
2908
9d277f8ad698
new enumeration: MimeType
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parents:
2905
diff
changeset
|
461 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
751
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diff
changeset
|
462 } |
|
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parents:
diff
changeset
|
463 |
|
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refactoring of OrthancRestApi
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parents:
diff
changeset
|
464 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
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parents:
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diff
changeset
|
465 template <DicomToJsonFormat format> |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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parents:
4694
diff
changeset
|
466 static void GetInstanceTagsInternal(RestApiGetCall& call) |
|
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|
467 { |
|
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|
468 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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refactoring of OrthancRestApi
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diff
changeset
|
469 |
|
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refactoring of OrthancRestApi
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parents:
diff
changeset
|
470 std::string publicId = call.GetUriComponent("id", ""); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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parents:
2408
diff
changeset
|
471 |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
472 std::set<DicomTag> ignoreTagLength; |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
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parents:
4716
diff
changeset
|
473 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
|
751
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refactoring of OrthancRestApi
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parents:
diff
changeset
|
474 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
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parents:
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diff
changeset
|
475 if (format != DicomToJsonFormat_Full || |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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parents:
2408
diff
changeset
|
476 !ignoreTagLength.empty()) |
|
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changeset
|
477 { |
|
1146
200fcac0deb4
optimization for access to attachments
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changeset
|
478 Json::Value full; |
|
2409
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ignore-length argument if retrieving DICOM tags
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parents:
2408
diff
changeset
|
479 context.ReadDicomAsJson(full, publicId, ignoreTagLength); |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
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diff
changeset
|
480 AnswerDicomAsJson(call, full, format); |
|
751
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|
481 } |
|
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|
482 else |
|
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parents:
diff
changeset
|
483 { |
|
3973
d86bddb50972
fix spelling errors according to debian
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
484 // This path allows one to avoid the JSON decoding if no |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
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2447
diff
changeset
|
485 // simplification is asked, and if no "ignore-length" argument |
|
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
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|
486 // is present |
|
4513
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simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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4473
diff
changeset
|
487 Json::Value full; |
| 2127 | 488 context.ReadDicomAsJson(full, publicId); |
|
4513
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simplification in ServerContext
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489 call.GetOutput().AnswerJson(full); |
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490 } |
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491 } |
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492 |
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493 |
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494 static void GetInstanceTags(RestApiGetCall& call) |
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495 { |
| 4404 | 496 if (call.IsDocumentation()) |
| 497 { | |
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498 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
| 4404 | 499 call.GetDocumentation() |
| 500 .SetTag("Instances") | |
| 501 .SetSummary("Get DICOM tags") | |
| 502 .SetDescription("Get the DICOM tags in the specified format. By default, the `full` format is used, which " | |
| 503 "combines hexadecimal tags with human-readable description.") | |
| 504 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
|
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505 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
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506 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
| 4404 | 507 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
| 4415 | 508 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/tags", 10); |
| 4404 | 509 return; |
| 510 } | |
| 511 | |
|
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512 switch (OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)) |
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513 { |
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514 case DicomToJsonFormat_Human: |
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515 GetInstanceTagsInternal<DicomToJsonFormat_Human>(call); |
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516 break; |
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517 |
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518 case DicomToJsonFormat_Short: |
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519 GetInstanceTagsInternal<DicomToJsonFormat_Short>(call); |
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520 break; |
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521 |
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522 case DicomToJsonFormat_Full: |
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523 GetInstanceTagsInternal<DicomToJsonFormat_Full>(call); |
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524 break; |
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525 |
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526 default: |
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527 throw OrthancException(ErrorCode_InternalError); |
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528 } |
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529 } |
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530 |
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531 |
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532 static void GetInstanceSimplifiedTags(RestApiGetCall& call) |
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533 { |
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534 if (call.IsDocumentation()) |
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535 { |
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536 call.GetDocumentation() |
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537 .SetTag("Instances") |
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538 .SetSummary("Get human-readable tags") |
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539 .SetDescription("Get the DICOM tags in human-readable format (same as the `/instances/{id}/tags?simplify` route)") |
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540 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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541 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
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542 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
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543 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
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544 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/simplified-tags", 10); |
|
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545 return; |
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546 } |
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547 else |
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548 { |
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549 GetInstanceTagsInternal<DicomToJsonFormat_Human>(call); |
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550 } |
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551 } |
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552 |
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553 |
| 974 | 554 static void ListFrames(RestApiGetCall& call) |
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555 { |
| 4414 | 556 if (call.IsDocumentation()) |
| 557 { | |
| 558 call.GetDocumentation() | |
| 559 .SetTag("Instances") | |
| 560 .SetSummary("List available frames") | |
| 561 .SetDescription("List the frames that are available in the DICOM instance of interest") | |
| 562 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 563 .AddAnswerType(MimeType_Json, "The list of the indices of the available frames") | |
| 564 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/frames", true); | |
| 565 return; | |
| 566 } | |
| 567 | |
|
1950
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568 std::string publicId = call.GetUriComponent("id", ""); |
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569 |
|
1950
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570 unsigned int numberOfFrames; |
|
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571 |
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572 { |
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573 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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574 numberOfFrames = locker.GetDicom().GetFramesCount(); |
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575 } |
|
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576 |
|
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577 Json::Value result = Json::arrayValue; |
|
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578 for (unsigned int i = 0; i < numberOfFrames; i++) |
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579 { |
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580 result.append(i); |
|
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581 } |
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582 |
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583 call.GetOutput().AnswerJson(result); |
|
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584 } |
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585 |
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586 |
|
1784
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587 namespace |
|
1781
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588 { |
|
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589 class ImageToEncode |
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590 { |
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591 private: |
|
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592 std::unique_ptr<ImageAccessor>& image_; |
|
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593 ImageExtractionMode mode_; |
|
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594 bool invert_; |
|
2908
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595 MimeType format_; |
|
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596 std::string answer_; |
|
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597 |
|
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598 public: |
|
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599 ImageToEncode(std::unique_ptr<ImageAccessor>& image, |
|
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600 ImageExtractionMode mode, |
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601 bool invert) : |
|
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602 image_(image), |
|
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603 mode_(mode), |
| 4205 | 604 invert_(invert), |
| 605 format_(MimeType_Binary) | |
|
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606 { |
|
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607 } |
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608 |
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609 void Answer(RestApiOutput& output) |
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610 { |
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611 output.AnswerBuffer(answer_, format_); |
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612 } |
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613 |
|
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614 void EncodeUsingPng() |
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615 { |
|
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616 format_ = MimeType_Png; |
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617 DicomImageDecoder::ExtractPngImage(answer_, image_, mode_, invert_); |
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618 } |
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619 |
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620 void EncodeUsingPam() |
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621 { |
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622 format_ = MimeType_Pam; |
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623 DicomImageDecoder::ExtractPamImage(answer_, image_, mode_, invert_); |
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624 } |
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625 |
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626 void EncodeUsingJpeg(uint8_t quality) |
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627 { |
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628 format_ = MimeType_Jpeg; |
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629 DicomImageDecoder::ExtractJpegImage(answer_, image_, mode_, invert_, quality); |
|
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630 } |
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631 }; |
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632 |
|
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633 class EncodePng : public HttpContentNegociation::IHandler |
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634 { |
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635 private: |
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636 ImageToEncode& image_; |
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637 |
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638 public: |
| 4205 | 639 explicit EncodePng(ImageToEncode& image) : image_(image) |
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640 { |
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641 } |
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642 |
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643 virtual void Handle(const std::string& type, |
| 4205 | 644 const std::string& subtype) ORTHANC_OVERRIDE |
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645 { |
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646 assert(type == "image"); |
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647 assert(subtype == "png"); |
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648 image_.EncodeUsingPng(); |
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649 } |
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650 }; |
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651 |
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652 class EncodePam : public HttpContentNegociation::IHandler |
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653 { |
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654 private: |
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655 ImageToEncode& image_; |
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656 |
|
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657 public: |
| 4205 | 658 explicit EncodePam(ImageToEncode& image) : image_(image) |
|
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659 { |
|
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660 } |
|
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|
661 |
|
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662 virtual void Handle(const std::string& type, |
| 4205 | 663 const std::string& subtype) ORTHANC_OVERRIDE |
|
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664 { |
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665 assert(type == "image"); |
| 2780 | 666 assert(subtype == "x-portable-arbitrarymap"); |
|
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667 image_.EncodeUsingPam(); |
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668 } |
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669 }; |
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|
670 |
|
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671 class EncodeJpeg : public HttpContentNegociation::IHandler |
|
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672 { |
|
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673 private: |
|
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674 ImageToEncode& image_; |
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675 unsigned int quality_; |
|
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676 |
|
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677 public: |
|
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678 EncodeJpeg(ImageToEncode& image, |
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679 const RestApiGetCall& call) : |
|
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680 image_(image) |
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681 { |
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682 std::string v = call.GetArgument("quality", "90" /* default JPEG quality */); |
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683 bool ok = false; |
|
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684 |
|
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685 try |
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686 { |
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687 quality_ = boost::lexical_cast<unsigned int>(v); |
| 1847 | 688 ok = (quality_ >= 1 && quality_ <= 100); |
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689 } |
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690 catch (boost::bad_lexical_cast&) |
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691 { |
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|
692 } |
|
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|
693 |
|
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|
694 if (!ok) |
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|
695 { |
| 2955 | 696 throw OrthancException( |
| 697 ErrorCode_BadRequest, | |
| 698 "Bad quality for a JPEG encoding (must be a number between 0 and 100): " + v); | |
|
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699 } |
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700 } |
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|
701 |
|
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|
702 virtual void Handle(const std::string& type, |
| 4205 | 703 const std::string& subtype) ORTHANC_OVERRIDE |
|
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|
704 { |
|
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705 assert(type == "image"); |
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706 assert(subtype == "jpeg"); |
|
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707 image_.EncodeUsingJpeg(quality_); |
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708 } |
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709 }; |
|
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|
710 } |
|
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AcceptMediaDispatcher bootstrap
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|
711 |
|
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|
712 |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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3640
diff
changeset
|
713 namespace |
|
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
714 { |
|
3683
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
715 class IDecodedFrameHandler : public boost::noncopyable |
|
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parents:
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diff
changeset
|
716 { |
|
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diff
changeset
|
717 public: |
|
12253ddefe5a
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diff
changeset
|
718 virtual ~IDecodedFrameHandler() |
|
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diff
changeset
|
719 { |
|
12253ddefe5a
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diff
changeset
|
720 } |
|
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parents:
3640
diff
changeset
|
721 |
|
4769
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4722
diff
changeset
|
722 // "dicom" is non-NULL iff. "RequiresDicomTags() == true" |
|
3683
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skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
723 virtual void Handle(RestApiGetCall& call, |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
724 std::unique_ptr<ImageAccessor>& decoded, |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4769
diff
changeset
|
725 const ParsedDicomFile* dicom, |
|
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
726 unsigned int frame) = 0; |
|
3683
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skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
727 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
728 virtual bool RequiresDicomTags() const = 0; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
729 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
730 static void Apply(RestApiGetCall& call, |
|
4406
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
731 IDecodedFrameHandler& handler, |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
732 ImageExtractionMode mode /* for generation of documentation */, |
|
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parents:
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diff
changeset
|
733 bool isRendered /* for generation of documentation */) |
|
3683
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skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
734 { |
|
4406
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
735 if (call.IsDocumentation()) |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
736 { |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
737 std::string m; |
|
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documenting generation of images
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parents:
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diff
changeset
|
738 if (!isRendered) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
739 { |
|
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parents:
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diff
changeset
|
740 switch (mode) |
|
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documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
741 { |
|
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documenting generation of images
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parents:
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diff
changeset
|
742 case ImageExtractionMode_Preview: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
743 m = "preview"; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
744 break; |
|
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parents:
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diff
changeset
|
745 case ImageExtractionMode_UInt8: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
746 m = "uint8"; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
747 break; |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
748 case ImageExtractionMode_UInt16: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
749 m = "uint16"; |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
750 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
751 case ImageExtractionMode_Int16: |
|
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documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
752 m = "int16"; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
753 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
754 default: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
755 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
756 } |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
757 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
758 |
|
4cb9f66a1c7c
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diff
changeset
|
759 std::string description; |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
760 std::string verb = (isRendered ? "Render" : "Decode"); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
761 |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
762 if (call.HasUriComponent("frame")) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
763 { |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
764 description = verb + " one frame of interest from the given DICOM instance."; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
765 call.GetDocumentation() |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
766 .SetSummary(verb + " a frame" + (m.empty() ? "" : " (" + m + ")")) |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
767 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
768 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
769 else |
|
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documenting generation of images
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parents:
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diff
changeset
|
770 { |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
771 description = verb + " the first frame of the given DICOM instance."; |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
772 call.GetDocumentation() |
|
4cb9f66a1c7c
documenting generation of images
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parents:
4405
diff
changeset
|
773 .SetSummary(verb + " an image" + (m.empty() ? "" : " (" + m + ")")); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
774 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
775 |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
776 if (isRendered) |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
777 { |
|
4cb9f66a1c7c
documenting generation of images
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parents:
4405
diff
changeset
|
778 description += (" This function takes scaling into account (`RescaleSlope` and `RescaleIntercept` tags), " |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
779 "as well as the default windowing stored in the DICOM file (`WindowCenter` and `WindowWidth`tags), " |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
780 "and can be used to resize the resulting image. Color images are not affected by windowing."); |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
781 call.GetDocumentation() |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
782 .SetHttpGetArgument("window-center",RestApiCallDocumentation::Type_Number, "Windowing center", false) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
783 .SetHttpGetArgument("window-width",RestApiCallDocumentation::Type_Number, "Windowing width", false) |
|
4cb9f66a1c7c
documenting generation of images
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parents:
4405
diff
changeset
|
784 .SetHttpGetArgument("width",RestApiCallDocumentation::Type_Number, "Width of the resized image", false) |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
785 .SetHttpGetArgument("height",RestApiCallDocumentation::Type_Number, "Height of the resized image", false) |
|
4cb9f66a1c7c
documenting generation of images
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parents:
4405
diff
changeset
|
786 .SetHttpGetArgument("smooth",RestApiCallDocumentation::Type_Boolean, "Whether to smooth image on resize", false); |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
787 } |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
788 else |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
789 { |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
790 switch (mode) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
791 { |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
792 case ImageExtractionMode_Preview: |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
793 description += " The full dynamic range of grayscale images is rescaled to the [0,255] range."; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
794 break; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
795 case ImageExtractionMode_UInt8: |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
796 description += " Pixels of grayscale images are truncated to the [0,255] range."; |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
797 break; |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
798 case ImageExtractionMode_UInt16: |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
799 description += " Pixels of grayscale images are truncated to the [0,65535] range."; |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
800 break; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
801 case ImageExtractionMode_Int16: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
802 description += (" Pixels of grayscale images are truncated to the [-32768,32767] range. " |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
803 "Negative values must be interpreted according to two's complement."); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
804 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
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4405
diff
changeset
|
805 default: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
806 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
807 } |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
808 } |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
809 |
|
4cb9f66a1c7c
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diff
changeset
|
810 call.GetDocumentation() |
|
4cb9f66a1c7c
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diff
changeset
|
811 .SetTag("Instances") |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
812 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
813 .SetHttpGetArgument("quality", RestApiCallDocumentation::Type_Number, "Quality for JPEG images (between 1 and 100, defaults to 90)", false) |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
814 .SetHttpGetArgument("returnUnsupportedImage", RestApiCallDocumentation::Type_Boolean, "Returns an unsupported.png placeholder image if unable to provide the image instead of returning a 415 HTTP error (defaults to false)", false) |
|
4406
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
815 .SetHttpHeader("Accept", "Format of the resulting image. Can be `image/png` (default), `image/jpeg` or `image/x-portable-arbitrarymap`") |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
816 .AddAnswerType(MimeType_Png, "PNG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
817 .AddAnswerType(MimeType_Jpeg, "JPEG image") |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
818 .AddAnswerType(MimeType_Pam, "PAM image (Portable Arbitrary Map)") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
819 .SetDescription(description); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
820 |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
821 return; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
822 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
823 |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
824 ServerContext& context = OrthancRestApi::GetContext(call); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
825 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
826 std::string frameId = call.GetUriComponent("frame", "0"); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
827 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
828 unsigned int frame; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
829 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
830 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
831 frame = boost::lexical_cast<unsigned int>(frameId); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
832 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
833 catch (boost::bad_lexical_cast&) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
834 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
835 return; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
836 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
837 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
838 std::unique_ptr<ImageAccessor> decoded; |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
839 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
840 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
841 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
842 std::string publicId = call.GetUriComponent("id", ""); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
843 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
844 decoded.reset(context.DecodeDicomFrame(publicId, frame)); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
845 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
846 if (decoded.get() == NULL) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
847 { |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
848 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
849 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
850 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
851 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
852 if (handler.RequiresDicomTags()) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
853 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
854 /** |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
855 * Retrieve a summary of the DICOM tags, which is |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
856 * necessary to deal with MONOCHROME1 photometric |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
857 * interpretation, and with windowing parameters. |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
858 **/ |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
859 ServerContext::DicomCacheLocker locker(context, publicId); |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4769
diff
changeset
|
860 handler.Handle(call, decoded, &locker.GetDicom(), frame); |
|
4769
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4722
diff
changeset
|
861 } |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4722
diff
changeset
|
862 else |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4722
diff
changeset
|
863 { |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4769
diff
changeset
|
864 handler.Handle(call, decoded, NULL, frame); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
865 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
866 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
867 catch (OrthancException& e) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
868 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
869 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange || |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
870 e.GetErrorCode() == ErrorCode_UnknownResource) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
871 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
872 // The frame number is out of the range for this DICOM |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
873 // instance, the resource is not existent |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
874 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
875 else |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
876 { |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
877 if (call.HasArgument("returnUnsupportedImage")) |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
878 { |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
879 std::string root = ""; |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
880 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
881 { |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
882 root += "../"; |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
883 } |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
884 |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
885 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
886 } |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
887 else |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
888 { |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
889 call.GetOutput().SignalError(HttpStatus_415_UnsupportedMediaType); |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
890 } |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
891 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
892 return; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
893 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
894 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
895 } |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
896 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
897 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
898 static void DefaultHandler(RestApiGetCall& call, |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
899 std::unique_ptr<ImageAccessor>& decoded, |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
900 ImageExtractionMode mode, |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
901 bool invert) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
902 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
903 ImageToEncode image(decoded, mode, invert); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
904 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
905 HttpContentNegociation negociation; |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
906 EncodePng png(image); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
907 negociation.Register(MIME_PNG, png); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
908 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
909 EncodeJpeg jpeg(image, call); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
910 negociation.Register(MIME_JPEG, jpeg); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
911 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
912 EncodePam pam(image); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
913 negociation.Register(MIME_PAM, pam); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
914 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
915 if (negociation.Apply(call.GetHttpHeaders())) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
916 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
917 image.Answer(call.GetOutput()); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
918 } |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
919 } |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
920 }; |
|
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
921 |
|
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
922 |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
923 class GetImageHandler : public IDecodedFrameHandler |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
924 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
925 private: |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
926 ImageExtractionMode mode_; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
927 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
928 public: |
| 4205 | 929 explicit GetImageHandler(ImageExtractionMode mode) : |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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930 mode_(mode) |
|
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931 { |
|
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932 } |
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933 |
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|
934 virtual void Handle(RestApiGetCall& call, |
|
3712
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|
935 std::unique_ptr<ImageAccessor>& decoded, |
|
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|
936 const ParsedDicomFile* dicom, |
|
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937 unsigned int frame) ORTHANC_OVERRIDE |
|
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938 { |
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939 bool invert = false; |
|
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940 |
|
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|
941 if (mode_ == ImageExtractionMode_Preview) |
|
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942 { |
|
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|
943 if (dicom == NULL) |
|
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944 { |
|
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|
945 throw OrthancException(ErrorCode_InternalError); |
|
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946 } |
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947 |
|
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|
948 DicomMap tags; |
|
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|
949 OrthancConfiguration::DefaultExtractDicomSummary(tags, *dicom); |
|
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950 |
|
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|
951 DicomImageInformation info(tags); |
|
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952 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
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953 } |
|
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|
954 |
|
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|
955 DefaultHandler(call, decoded, mode_, invert); |
|
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956 } |
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957 |
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958 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
|
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959 { |
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960 return mode_ == ImageExtractionMode_Preview; |
|
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961 } |
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962 }; |
|
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963 |
|
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|
964 |
|
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|
965 class RenderedFrameHandler : public IDecodedFrameHandler |
|
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966 { |
|
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|
967 private: |
|
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968 static void GetUserArguments(double& windowWidth /* inout */, |
|
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969 double& windowCenter /* inout */, |
|
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|
970 unsigned int& argWidth, |
|
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|
971 unsigned int& argHeight, |
|
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|
972 bool& smooth, |
| 4205 | 973 const RestApiGetCall& call) |
|
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974 { |
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975 static const char* ARG_WINDOW_CENTER = "window-center"; |
|
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976 static const char* ARG_WINDOW_WIDTH = "window-width"; |
|
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|
977 static const char* ARG_WIDTH = "width"; |
|
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978 static const char* ARG_HEIGHT = "height"; |
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|
979 static const char* ARG_SMOOTH = "smooth"; |
|
3600
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changeset
|
980 |
|
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Support detection of windowing and rescale in Philips multiframe images
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changeset
|
981 if (call.HasArgument(ARG_WINDOW_WIDTH) && |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
982 !SerializationToolbox::ParseDouble(windowWidth, call.GetArgument(ARG_WINDOW_WIDTH, ""))) |
|
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|
983 { |
|
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changeset
|
984 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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Support detection of windowing and rescale in Philips multiframe images
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changeset
|
985 "Bad value for argument: " + std::string(ARG_WINDOW_WIDTH)); |
|
3685
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986 } |
|
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|
987 |
|
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|
988 if (call.HasArgument(ARG_WINDOW_CENTER) && |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
989 !SerializationToolbox::ParseDouble(windowCenter, call.GetArgument(ARG_WINDOW_CENTER, ""))) |
|
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changeset
|
990 { |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
991 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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|
992 "Bad value for argument: " + std::string(ARG_WINDOW_CENTER)); |
|
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|
993 } |
|
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changeset
|
994 |
|
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|
995 argWidth = 0; |
|
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|
996 argHeight = 0; |
|
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changeset
|
997 |
|
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changeset
|
998 if (call.HasArgument(ARG_WIDTH)) |
|
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|
999 { |
|
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changeset
|
1000 try |
|
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changeset
|
1001 { |
|
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|
1002 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_WIDTH, "")); |
|
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|
1003 if (tmp < 0) |
|
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|
1004 { |
|
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1005 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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|
1006 "Argument cannot be negative: " + std::string(ARG_WIDTH)); |
|
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1007 } |
|
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|
1008 else |
|
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|
1009 { |
|
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|
1010 argWidth = static_cast<unsigned int>(tmp); |
|
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1011 } |
|
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|
1012 } |
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1013 catch (boost::bad_lexical_cast&) |
|
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1014 { |
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|
1015 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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|
1016 "Bad value for argument: " + std::string(ARG_WIDTH)); |
|
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1017 } |
|
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1018 } |
|
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|
1019 |
|
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|
1020 if (call.HasArgument(ARG_HEIGHT)) |
|
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|
1021 { |
|
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|
1022 try |
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changeset
|
1023 { |
|
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changeset
|
1024 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_HEIGHT, "")); |
|
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changeset
|
1025 if (tmp < 0) |
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|
1026 { |
|
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changeset
|
1027 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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changeset
|
1028 "Argument cannot be negative: " + std::string(ARG_HEIGHT)); |
|
3685
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|
1029 } |
|
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changeset
|
1030 else |
|
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changeset
|
1031 { |
|
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changeset
|
1032 argHeight = static_cast<unsigned int>(tmp); |
|
3685
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changeset
|
1033 } |
|
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1034 } |
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1035 catch (boost::bad_lexical_cast&) |
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1036 { |
|
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1037 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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1038 "Bad value for argument: " + std::string(ARG_HEIGHT)); |
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1039 } |
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1040 } |
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1041 |
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1042 smooth = false; |
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1043 |
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1044 if (call.HasArgument(ARG_SMOOTH)) |
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1045 { |
|
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1046 smooth = RestApiCall::ParseBoolean(call.GetArgument(ARG_SMOOTH, "")); |
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1047 } |
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1048 } |
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1049 |
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1050 |
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1051 public: |
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1052 virtual void Handle(RestApiGetCall& call, |
|
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1053 std::unique_ptr<ImageAccessor>& decoded, |
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1054 const ParsedDicomFile* dicom, |
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1055 unsigned int frame) ORTHANC_OVERRIDE |
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1056 { |
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1057 if (dicom == NULL) |
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1058 { |
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1059 throw OrthancException(ErrorCode_InternalError); |
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1060 } |
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1061 |
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1062 PhotometricInterpretation photometric; |
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1063 const bool invert = (dicom->LookupPhotometricInterpretation(photometric) && |
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1064 photometric == PhotometricInterpretation_Monochrome1); |
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1065 |
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1066 double rescaleIntercept, rescaleSlope, windowCenter, windowWidth; |
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1067 dicom->GetRescale(rescaleIntercept, rescaleSlope, frame); |
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1068 dicom->GetDefaultWindowing(windowCenter, windowWidth, frame); |
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1069 |
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1070 unsigned int argWidth, argHeight; |
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1071 bool smooth; |
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1072 GetUserArguments(windowWidth, windowCenter, argWidth, argHeight, smooth, call); |
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1073 |
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1074 unsigned int targetWidth = decoded->GetWidth(); |
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1075 unsigned int targetHeight = decoded->GetHeight(); |
| 3686 | 1076 |
| 1077 if (decoded->GetWidth() != 0 && | |
| 1078 decoded->GetHeight() != 0) | |
| 1079 { | |
| 1080 float ratio = 1; | |
| 1081 | |
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1082 if (argWidth != 0 && |
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1083 argHeight != 0) |
| 3686 | 1084 { |
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1085 float ratioX = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
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1086 float ratioY = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
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1087 ratio = std::min(ratioX, ratioY); |
| 3686 | 1088 } |
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1089 else if (argWidth != 0) |
| 3686 | 1090 { |
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1091 ratio = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
| 3686 | 1092 } |
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1093 else if (argHeight != 0) |
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1094 { |
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1095 ratio = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
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1096 } |
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1097 |
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1098 targetWidth = boost::math::iround(ratio * static_cast<float>(decoded->GetWidth())); |
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1099 targetHeight = boost::math::iround(ratio * static_cast<float>(decoded->GetHeight())); |
| 3686 | 1100 } |
| 1101 | |
|
5054
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1102 if (decoded->GetFormat() == PixelFormat_RGB24 || decoded->GetFormat() == PixelFormat_RGB48) |
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1103 { |
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1104 if (targetWidth == decoded->GetWidth() && |
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1105 targetHeight == decoded->GetHeight()) |
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1106 { |
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1107 DefaultHandler(call, decoded, ImageExtractionMode_Preview, false); |
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1108 } |
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1109 else |
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1110 { |
|
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1111 std::unique_ptr<ImageAccessor> resized( |
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1112 new Image(decoded->GetFormat(), targetWidth, targetHeight, false)); |
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1113 |
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|
1114 if (smooth && |
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1115 (targetWidth < decoded->GetWidth() || |
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1116 targetHeight < decoded->GetHeight())) |
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1117 { |
|
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1118 ImageProcessing::SmoothGaussian5x5(*decoded, false /* be fast, don't round */); |
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1119 } |
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1120 |
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1121 ImageProcessing::Resize(*resized, *decoded); |
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1122 DefaultHandler(call, resized, ImageExtractionMode_Preview, false); |
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1123 } |
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1124 } |
| 3686 | 1125 else |
| 1126 { | |
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1127 // Grayscale image: (1) convert to Float32, (2) apply |
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1128 // windowing to get a Grayscale8, (3) possibly resize |
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1129 |
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1130 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
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1131 ImageProcessing::Convert(converted, *decoded); |
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1132 |
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1133 // Avoid divisions by zero |
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1134 if (windowWidth <= 1.0f) |
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1135 { |
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1136 windowWidth = 1; |
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1137 } |
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1138 |
|
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1139 if (std::abs(rescaleSlope) <= 0.0001) |
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1140 { |
|
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1141 rescaleSlope = 0.0001; |
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1142 } |
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1143 |
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1144 const double scaling = 255.0 * rescaleSlope / windowWidth; |
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1145 const double offset = (rescaleIntercept - windowCenter + windowWidth / 2.0) / rescaleSlope; |
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1146 |
|
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1147 std::unique_ptr<ImageAccessor> rescaled(new Image(PixelFormat_Grayscale8, decoded->GetWidth(), decoded->GetHeight(), false)); |
|
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1148 ImageProcessing::ShiftScale(*rescaled, converted, static_cast<float>(offset), static_cast<float>(scaling), false); |
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1149 |
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1150 if (targetWidth == decoded->GetWidth() && |
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1151 targetHeight == decoded->GetHeight()) |
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1152 { |
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1153 DefaultHandler(call, rescaled, ImageExtractionMode_UInt8, invert); |
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1154 } |
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1155 else |
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1156 { |
|
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1157 std::unique_ptr<ImageAccessor> resized( |
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1158 new Image(PixelFormat_Grayscale8, targetWidth, targetHeight, false)); |
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1159 |
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1160 if (smooth && |
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1161 (targetWidth < decoded->GetWidth() || |
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1162 targetHeight < decoded->GetHeight())) |
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1163 { |
|
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1164 ImageProcessing::SmoothGaussian5x5(*rescaled, false /* be fast, don't round */); |
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1165 } |
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1166 |
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1167 ImageProcessing::Resize(*resized, *rescaled); |
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1168 DefaultHandler(call, resized, ImageExtractionMode_UInt8, invert); |
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1169 } |
| 3686 | 1170 } |
|
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1171 } |
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1172 |
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1173 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
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1174 { |
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1175 return true; |
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1176 } |
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1177 }; |
|
3600
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1178 } |
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1179 |
|
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1180 |
|
751
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1181 template <enum ImageExtractionMode mode> |
| 974 | 1182 static void GetImage(RestApiGetCall& call) |
|
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1183 { |
|
3926
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1184 Semaphore::Locker locker(throttlingSemaphore_); |
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1185 |
|
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1186 GetImageHandler handler(mode); |
|
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1187 IDecodedFrameHandler::Apply(call, handler, mode, false /* not rendered */); |
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1188 } |
|
1906
d7c1cb559431
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1189 |
|
1826
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1190 |
|
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1191 static void GetRenderedFrame(RestApiGetCall& call) |
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1192 { |
|
3926
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1193 Semaphore::Locker locker(throttlingSemaphore_); |
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1194 |
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1195 RenderedFrameHandler handler; |
|
4406
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1196 IDecodedFrameHandler::Apply(call, handler, ImageExtractionMode_Preview /* arbitrary value */, true); |
|
751
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1197 } |
|
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1198 |
|
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1199 |
|
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1200 static void DocumentSharedNumpy(RestApiGetCall& call) |
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1201 { |
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1202 call.GetDocumentation() |
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1203 .SetUriArgument("id", "Orthanc identifier of the DICOM resource of interest") |
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1204 .SetHttpGetArgument("compress", RestApiCallDocumentation::Type_Boolean, "Compress the file as `.npz`", false) |
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1205 .SetHttpGetArgument("rescale", RestApiCallDocumentation::Type_Boolean, |
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1206 "On grayscale images, apply the rescaling and return floating-point values", false) |
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1207 .AddAnswerType(MimeType_PlainText, "Numpy file: https://numpy.org/devdocs/reference/generated/numpy.lib.format.html"); |
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1208 } |
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1209 |
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1210 |
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1211 namespace |
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1212 { |
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1213 class NumpyVisitor : public boost::noncopyable |
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1214 { |
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1215 private: |
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1216 bool rescale_; |
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1217 unsigned int depth_; |
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|
1218 unsigned int currentDepth_; |
| 4858 | 1219 unsigned int width_; |
|
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1220 unsigned int height_; |
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1221 PixelFormat format_; |
|
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|
1222 ChunkedBuffer buffer_; |
|
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1223 |
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1224 public: |
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1225 NumpyVisitor(unsigned int depth /* can be zero if 2D frame */, |
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1226 bool rescale) : |
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1227 rescale_(rescale), |
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|
1228 depth_(depth), |
| 4858 | 1229 currentDepth_(0), |
| 1230 width_(0), // dummy initialization | |
| 1231 height_(0), // dummy initialization | |
| 1232 format_(PixelFormat_Grayscale8) // dummy initialization | |
|
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1233 { |
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1234 } |
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1235 |
| 4858 | 1236 void WriteFrame(const ParsedDicomFile& dicom, |
|
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1237 unsigned int frame) |
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1238 { |
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1239 std::unique_ptr<ImageAccessor> decoded(dicom.DecodeFrame(frame)); |
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1240 |
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|
1241 if (decoded.get() == NULL) |
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1242 { |
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1243 throw OrthancException(ErrorCode_NotImplemented, "Cannot decode DICOM instance"); |
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1244 } |
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1245 |
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1246 if (currentDepth_ == 0) |
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1247 { |
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1248 width_ = decoded->GetWidth(); |
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1249 height_ = decoded->GetHeight(); |
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1250 format_ = decoded->GetFormat(); |
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1251 } |
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1252 else if (width_ != decoded->GetWidth() || |
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|
1253 height_ != decoded->GetHeight()) |
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1254 { |
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|
1255 throw OrthancException(ErrorCode_IncompatibleImageSize, "The size of the frames varies across the instance(s)"); |
|
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1256 } |
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|
1257 else if (format_ != decoded->GetFormat()) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1258 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1259 throw OrthancException(ErrorCode_IncompatibleImageFormat, "The pixel format of the frames varies across the instance(s)"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1260 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1261 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1262 if (rescale_ && |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1263 decoded->GetFormat() != PixelFormat_RGB24) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1264 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1265 if (currentDepth_ == 0) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1266 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1267 NumpyWriter::WriteHeader(buffer_, depth_, width_, height_, PixelFormat_Float32); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1268 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1269 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1270 double rescaleIntercept, rescaleSlope; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1271 dicom.GetRescale(rescaleIntercept, rescaleSlope, frame); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1272 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1273 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1274 ImageProcessing::Convert(converted, *decoded); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1275 ImageProcessing::ShiftScale2(converted, static_cast<float>(rescaleIntercept), static_cast<float>(rescaleSlope), false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1276 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1277 NumpyWriter::WritePixels(buffer_, converted); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1278 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1279 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1280 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1281 if (currentDepth_ == 0) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1282 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1283 NumpyWriter::WriteHeader(buffer_, depth_, width_, height_, format_); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1284 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1285 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1286 NumpyWriter::WritePixels(buffer_, *decoded); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1287 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1288 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1289 currentDepth_ ++; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1290 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1291 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1292 void Answer(RestApiOutput& output, |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1293 bool compress) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1294 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1295 if ((depth_ == 0 && currentDepth_ != 1) || |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1296 (depth_ != 0 && currentDepth_ != depth_)) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1297 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1298 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1299 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1300 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1301 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1302 std::string answer; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1303 NumpyWriter::Finalize(answer, buffer_, compress); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1304 output.AnswerBuffer(answer, MimeType_Binary); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1305 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1306 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1307 }; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1308 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1309 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1310 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1311 static void GetNumpyFrame(RestApiGetCall& call) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1312 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1313 if (call.IsDocumentation()) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1314 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1315 DocumentSharedNumpy(call); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1316 call.GetDocumentation() |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1317 .SetTag("Instances") |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1318 .SetSummary("Decode frame for numpy") |
|
4836
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Sebastien Jodogne <s.jodogne@gmail.com>
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4834
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|
1319 .SetDescription("Decode one frame of interest from the given DICOM instance, for use with numpy in Python. " |
|
ec1e9571b645
document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1320 "The numpy array has 3 dimensions: (height, width, color channel).") |
|
4834
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1321 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1322 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1323 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1324 { |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1325 const std::string instanceId = call.GetUriComponent("id", ""); |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1326 const bool compress = call.GetBooleanArgument("compress", false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1327 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1328 |
|
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parents:
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changeset
|
1329 uint32_t frame; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1330 if (!SerializationToolbox::ParseUnsignedInteger32(frame, call.GetUriComponent("frame", "0"))) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1331 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1332 throw OrthancException(ErrorCode_ParameterOutOfRange, "Expected an unsigned integer for the \"frame\" argument"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1333 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1334 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1335 NumpyVisitor visitor(0 /* no depth, 2D frame */, rescale); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1336 |
|
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parents:
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changeset
|
1337 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1338 Semaphore::Locker throttling(throttlingSemaphore_); |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1339 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1340 |
|
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parents:
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diff
changeset
|
1341 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
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parents:
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|
1342 } |
|
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diff
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|
1343 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1344 visitor.Answer(call.GetOutput(), compress); |
|
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download of numpy arrays from the REST API
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parents:
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diff
changeset
|
1345 } |
|
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diff
changeset
|
1346 } |
|
bec432ee1094
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diff
changeset
|
1347 |
|
bec432ee1094
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parents:
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diff
changeset
|
1348 |
|
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diff
changeset
|
1349 static void GetNumpyInstance(RestApiGetCall& call) |
|
bec432ee1094
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|
1350 { |
|
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download of numpy arrays from the REST API
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diff
changeset
|
1351 if (call.IsDocumentation()) |
|
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|
1352 { |
|
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parents:
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diff
changeset
|
1353 DocumentSharedNumpy(call); |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
changeset
|
1354 call.GetDocumentation() |
|
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download of numpy arrays from the REST API
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diff
changeset
|
1355 .SetTag("Instances") |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1356 .SetSummary("Decode instance for numpy") |
|
4836
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document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4834
diff
changeset
|
1357 .SetDescription("Decode the given DICOM instance, for use with numpy in Python. " |
|
ec1e9571b645
document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4834
diff
changeset
|
1358 "The numpy array has 4 dimensions: (frame, height, width, color channel)."); |
|
4834
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1359 } |
|
bec432ee1094
download of numpy arrays from the REST API
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changeset
|
1360 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1361 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1362 const std::string instanceId = call.GetUriComponent("id", ""); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1363 const bool compress = call.GetBooleanArgument("compress", false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1364 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1365 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1366 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1367 Semaphore::Locker throttling(throttlingSemaphore_); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1368 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1369 |
|
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download of numpy arrays from the REST API
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|
1370 const unsigned int depth = locker.GetDicom().GetFramesCount(); |
|
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1371 if (depth == 0) |
|
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1372 { |
|
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1373 throw OrthancException(ErrorCode_BadFileFormat, "Empty DICOM instance"); |
|
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1374 } |
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1375 |
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|
1376 NumpyVisitor visitor(depth, rescale); |
|
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1377 |
|
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|
1378 for (unsigned int frame = 0; frame < depth; frame++) |
|
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1379 { |
|
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1380 visitor.WriteFrame(locker.GetDicom(), frame); |
|
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1381 } |
|
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1382 |
|
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1383 visitor.Answer(call.GetOutput(), compress); |
|
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1384 } |
|
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1385 } |
|
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1386 } |
|
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|
1387 |
|
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|
1388 |
|
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|
1389 static void GetNumpySeries(RestApiGetCall& call) |
|
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1390 { |
|
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1391 if (call.IsDocumentation()) |
|
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1392 { |
|
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|
1393 DocumentSharedNumpy(call); |
|
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|
1394 call.GetDocumentation() |
|
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1395 .SetTag("Series") |
|
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|
1396 .SetSummary("Decode series for numpy") |
|
4836
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|
1397 .SetDescription("Decode the given DICOM series, for use with numpy in Python. " |
|
ec1e9571b645
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|
1398 "The numpy array has 4 dimensions: (frame, height, width, color channel)."); |
|
4834
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1399 } |
|
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1400 else |
|
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1401 { |
|
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|
1402 const std::string seriesId = call.GetUriComponent("id", ""); |
|
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|
1403 const bool compress = call.GetBooleanArgument("compress", false); |
|
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|
1404 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
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|
1405 |
|
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|
1406 Semaphore::Locker throttling(throttlingSemaphore_); |
|
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|
1407 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1408 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
bec432ee1094
download of numpy arrays from the REST API
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|
1409 SliceOrdering ordering(index, seriesId); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1410 |
|
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|
1411 unsigned int depth = 0; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1412 for (size_t i = 0; i < ordering.GetInstancesCount(); i++) |
|
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|
1413 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1414 depth += ordering.GetFramesCount(i); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1415 } |
|
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|
1416 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1417 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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download of numpy arrays from the REST API
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|
1418 |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1419 NumpyVisitor visitor(depth, rescale); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1420 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1421 for (size_t i = 0; i < ordering.GetInstancesCount(); i++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1422 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1423 const std::string& instanceId = ordering.GetInstanceId(i); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1424 unsigned int framesCount = ordering.GetFramesCount(i); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1425 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1426 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1427 ServerContext::DicomCacheLocker locker(context, instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1428 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1429 for (unsigned int frame = 0; frame < framesCount; frame++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1430 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1431 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
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|
1432 } |
|
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|
1433 } |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1434 } |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1435 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1436 visitor.Answer(call.GetOutput(), compress); |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
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|
1437 } |
|
bec432ee1094
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changeset
|
1438 } |
|
bec432ee1094
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parents:
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diff
changeset
|
1439 |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1440 |
| 974 | 1441 static void GetMatlabImage(RestApiGetCall& call) |
|
874
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1442 { |
| 4414 | 1443 if (call.IsDocumentation()) |
| 1444 { | |
| 1445 std::string description; | |
| 1446 | |
| 1447 if (call.HasUriComponent("frame")) | |
| 1448 { | |
| 1449 description = "Decode one frame of interest from the given DICOM instance"; | |
| 1450 call.GetDocumentation() | |
| 1451 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
| 1452 } | |
| 1453 else | |
| 1454 { | |
| 1455 description = "Decode the first frame of the given DICOM instance."; | |
| 1456 } | |
| 1457 | |
| 1458 call.GetDocumentation() | |
| 1459 .SetTag("Instances") | |
| 1460 .SetSummary("Decode frame for Matlab") | |
| 1461 .SetDescription(description + ", and export this frame as a Octave/Matlab matrix to be imported with `eval()`: " | |
| 1462 "https://book.orthanc-server.com/faq/matlab.html") | |
| 1463 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 1464 .AddAnswerType(MimeType_PlainText, "Octave/Matlab matrix"); | |
| 1465 return; | |
| 1466 } | |
| 1467 | |
|
3926
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1468 Semaphore::Locker locker(throttlingSemaphore_); |
|
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
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diff
changeset
|
1469 |
|
874
87791ebc1f50
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diff
changeset
|
1470 ServerContext& context = OrthancRestApi::GetContext(call); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1471 |
|
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1472 std::string frameId = call.GetUriComponent("frame", "0"); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1473 |
|
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1474 unsigned int frame; |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1475 try |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1476 { |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1477 frame = boost::lexical_cast<unsigned int>(frameId); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1478 } |
|
2836
7133ad478eea
fix Debian warnings
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1479 catch (boost::bad_lexical_cast&) |
|
874
87791ebc1f50
download matlab images
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parents:
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diff
changeset
|
1480 { |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1481 return; |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1482 } |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1483 |
|
87791ebc1f50
download matlab images
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diff
changeset
|
1484 std::string publicId = call.GetUriComponent("id", ""); |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1485 std::unique_ptr<ImageAccessor> decoded(context.DecodeDicomFrame(publicId, frame)); |
|
874
87791ebc1f50
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diff
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|
1486 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
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|
1487 if (decoded.get() == NULL) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
1488 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
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|
1489 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
1490 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1491 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1492 else |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1493 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1494 std::string result; |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1495 decoded->ToMatlabString(result); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1496 call.GetOutput().AnswerBuffer(result, MimeType_PlainText); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1497 } |
|
874
87791ebc1f50
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diff
changeset
|
1498 } |
|
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1499 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1500 |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1501 template <bool GzipCompression> |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1502 static void GetRawFrame(RestApiGetCall& call) |
|
6c73df12ca51
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1503 { |
| 4408 | 1504 if (call.IsDocumentation()) |
| 1505 { | |
| 1506 call.GetDocumentation() | |
| 1507 .SetTag("Instances") | |
| 1508 .SetSummary("Access raw frame" + std::string(GzipCompression ? " (compressed)" : "")) | |
| 1509 .SetDescription("Access the raw content of one individual frame of the DICOM instance of interest, " | |
| 1510 "bypassing image decoding. This is notably useful to access the source files " | |
| 1511 "in compressed transfer syntaxes." + | |
| 1512 std::string(GzipCompression ? " The image is compressed using gzip" : "")) | |
|
4424
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1513 .SetUriArgument("id", "Orthanc identifier of the instance of interest") |
| 4408 | 1514 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
| 1515 | |
| 1516 if (GzipCompression) | |
| 1517 { | |
| 1518 call.GetDocumentation().AddAnswerType(MimeType_Gzip, "The raw frame, compressed using gzip"); | |
| 1519 } | |
| 1520 else | |
| 1521 { | |
| 1522 call.GetDocumentation().AddAnswerType(MimeType_Binary, "The raw frame"); | |
| 1523 } | |
| 1524 return; | |
| 1525 } | |
| 1526 | |
|
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1527 std::string frameId = call.GetUriComponent("frame", "0"); |
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1528 |
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1529 unsigned int frame; |
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1530 try |
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1531 { |
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1532 frame = boost::lexical_cast<unsigned int>(frameId); |
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1533 } |
|
2836
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1534 catch (boost::bad_lexical_cast&) |
|
1924
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1535 { |
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1536 return; |
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1537 } |
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1538 |
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1539 std::string publicId = call.GetUriComponent("id", ""); |
|
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1540 std::string raw; |
|
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1541 MimeType mime; |
|
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1542 |
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1543 { |
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1544 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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1545 locker.GetDicom().GetRawFrame(raw, mime, frame); |
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1546 } |
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1547 |
|
2408
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1548 if (GzipCompression) |
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1549 { |
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1550 GzipCompressor gzip; |
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1551 std::string compressed; |
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1552 gzip.Compress(compressed, raw.empty() ? NULL : raw.c_str(), raw.size()); |
|
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1553 call.GetOutput().AnswerBuffer(compressed, MimeType_Gzip); |
|
2408
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1554 } |
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1555 else |
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1556 { |
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1557 call.GetOutput().AnswerBuffer(raw, mime); |
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1558 } |
|
1924
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1559 } |
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1560 |
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1561 |
| 974 | 1562 static void GetResourceStatistics(RestApiGetCall& call) |
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1563 { |
| 4418 | 1564 if (call.IsDocumentation()) |
| 1565 { | |
| 1566 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1567 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1568 call.GetDocumentation() | |
| 1569 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1570 .SetSummary("Get " + r + " statistics") | |
| 1571 .SetDescription("Get statistics about the given " + r) | |
| 1572 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1573 .SetAnswerField("DiskSize", RestApiCallDocumentation::Type_String, | |
| 1574 "Size of the " + r + " on the disk in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1575 .SetAnswerField("DiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1576 "Size of the " + r + " on the disk, expressed in megabytes (MB)") | |
| 1577 .SetAnswerField("UncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1578 "Size of the " + r + " after decompression in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1579 .SetAnswerField("UncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1580 "Size of the " + r + " after decompression, expressed in megabytes (MB). " | |
| 1581 "This is different from `DiskSizeMB` iff `StorageCompression` is `true`.") | |
| 1582 .SetAnswerField("DicomDiskSize", RestApiCallDocumentation::Type_String, | |
| 1583 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1584 .SetAnswerField("DicomDiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1585 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1586 .SetAnswerField("DicomUncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1587 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1588 .SetAnswerField("DicomUncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1589 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1590 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/statistics", true); | |
| 1591 | |
| 1592 switch (t) | |
| 1593 { | |
| 1594 // Do NOT add "break" below this point! | |
| 1595 case ResourceType_Patient: | |
| 1596 call.GetDocumentation().SetAnswerField("CountStudies", RestApiCallDocumentation::Type_Number, | |
| 1597 "Number of child studies within this " + r); | |
| 1598 | |
| 1599 case ResourceType_Study: | |
| 1600 call.GetDocumentation().SetAnswerField("CountSeries", RestApiCallDocumentation::Type_Number, | |
| 1601 "Number of child series within this " + r); | |
| 1602 | |
| 1603 case ResourceType_Series: | |
| 1604 call.GetDocumentation().SetAnswerField("CountInstances", RestApiCallDocumentation::Type_Number, | |
| 1605 "Number of child instances within this " + r); | |
| 1606 | |
| 1607 case ResourceType_Instance: | |
| 1608 default: | |
| 1609 break; | |
| 1610 } | |
| 1611 | |
| 1612 return; | |
| 1613 } | |
| 1614 | |
|
3174
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1615 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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1616 |
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1617 std::string publicId = call.GetUriComponent("id", ""); |
|
3174
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1618 |
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1619 ResourceType type; |
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1620 uint64_t diskSize, uncompressedSize, dicomDiskSize, dicomUncompressedSize; |
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1621 unsigned int countStudies, countSeries, countInstances; |
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1622 OrthancRestApi::GetIndex(call).GetResourceStatistics( |
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1623 type, diskSize, uncompressedSize, countStudies, countSeries, |
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1624 countInstances, dicomDiskSize, dicomUncompressedSize, publicId); |
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1625 |
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1626 Json::Value result = Json::objectValue; |
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1627 result["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1628 result["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
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1629 result["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1630 result["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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1631 |
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1632 result["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1633 result["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1634 result["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1635 result["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1636 |
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1637 switch (type) |
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1638 { |
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1639 // Do NOT add "break" below this point! |
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1640 case ResourceType_Patient: |
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1641 result["CountStudies"] = countStudies; |
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1642 |
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1643 case ResourceType_Study: |
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1644 result["CountSeries"] = countSeries; |
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1645 |
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1646 case ResourceType_Series: |
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1647 result["CountInstances"] = countInstances; |
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1648 |
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1649 case ResourceType_Instance: |
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1650 default: |
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1651 break; |
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1652 } |
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1653 |
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1654 call.GetOutput().AnswerJson(result); |
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1655 } |
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1656 |
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1657 |
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1658 |
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1659 // Handling of metadata ----------------------------------------------------- |
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1660 |
| 4205 | 1661 static void CheckValidResourceType(const RestApiCall& call) |
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1662 { |
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1663 assert(!call.GetFullUri().empty()); |
| 4409 | 1664 const std::string resourceType = call.GetFullUri() [0]; |
|
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1665 StringToResourceType(resourceType.c_str()); |
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1666 } |
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1667 |
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1668 |
| 974 | 1669 static void ListMetadata(RestApiGetCall& call) |
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1670 { |
| 4414 | 1671 if (call.IsDocumentation()) |
| 1672 { | |
| 1673 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1674 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1675 call.GetDocumentation() | |
| 1676 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1677 .SetSummary("List metadata") | |
| 1678 .SetDescription("Get the list of metadata that are associated with the given " + r) | |
| 1679 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1680 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, | |
| 1681 "If present, also retrieve the value of the individual metadata", false) | |
| 1682 .AddAnswerType(MimeType_Json, "JSON array containing the names of the available metadata, " | |
| 1683 "or JSON associative array mapping metadata to their values (if `expand` argument is provided)") | |
| 1684 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/metadata", true); | |
| 1685 return; | |
| 1686 } | |
| 1687 | |
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1688 assert(!call.GetFullUri().empty()); |
| 4554 | 1689 const std::string publicId = call.GetUriComponent("id", ""); |
| 1690 ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); | |
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1691 |
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1692 typedef std::map<MetadataType, std::string> Metadata; |
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1693 |
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1694 Metadata metadata; |
| 4554 | 1695 OrthancRestApi::GetIndex(call).GetAllMetadata(metadata, publicId, level); |
|
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1696 |
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1697 Json::Value result; |
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1698 |
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1699 if (call.HasArgument("expand")) |
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1700 { |
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1701 result = Json::objectValue; |
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1702 |
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1703 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
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1704 { |
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1705 std::string key = EnumerationToString(it->first); |
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1706 result[key] = it->second; |
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1707 } |
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1708 } |
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1709 else |
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1710 { |
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1711 result = Json::arrayValue; |
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1712 |
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1713 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
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1714 { |
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1715 result.append(EnumerationToString(it->first)); |
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1716 } |
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1717 } |
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1718 |
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1719 call.GetOutput().AnswerJson(result); |
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1720 } |
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1721 |
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1722 |
| 4657 | 1723 static void SetStringContentETag(const RestApiOutput& output, |
| 1724 int64_t revision, | |
| 1725 const std::string& value) | |
|
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1726 { |
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1727 std::string md5; |
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1728 Toolbox::ComputeMD5(md5, value); |
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1729 const std::string etag = "\"" + boost::lexical_cast<std::string>(revision) + "-" + md5 + "\""; |
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1730 output.GetLowLevelOutput().AddHeader("ETag", etag); |
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1731 } |
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1732 |
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1733 |
| 4657 | 1734 static void SetBufferContentETag(const RestApiOutput& output, |
|
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1735 int64_t revision, |
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1736 const void* data, |
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1737 size_t size) |
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1738 { |
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1739 std::string md5; |
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1740 Toolbox::ComputeMD5(md5, data, size); |
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1741 const std::string etag = "\"" + boost::lexical_cast<std::string>(revision) + "-" + md5 + "\""; |
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1742 output.GetLowLevelOutput().AddHeader("ETag", etag); |
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1743 } |
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1744 |
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1745 |
| 4657 | 1746 static void SetAttachmentETag(const RestApiOutput& output, |
|
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1747 int64_t revision, |
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1748 const FileInfo& info) |
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1749 { |
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1750 const std::string etag = ("\"" + boost::lexical_cast<std::string>(revision) + "-" + |
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1751 info.GetUncompressedMD5() + "\""); |
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1752 output.GetLowLevelOutput().AddHeader("ETag", etag); |
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1753 } |
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1754 |
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1755 |
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1756 static std::string GetMD5(const std::string& value) |
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1757 { |
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1758 std::string md5; |
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1759 Toolbox::ComputeMD5(md5, value); |
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1760 return md5; |
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1761 } |
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1762 |
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1763 |
|
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1764 static bool GetRevisionHeader(int64_t& revision /* out */, |
|
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1765 std::string& md5 /* out */, |
|
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1766 const RestApiCall& call, |
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1767 const std::string& header) |
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1768 { |
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1769 std::string lower; |
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1770 Toolbox::ToLowerCase(lower, header); |
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1771 |
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1772 HttpToolbox::Arguments::const_iterator found = call.GetHttpHeaders().find(lower); |
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1773 if (found == call.GetHttpHeaders().end()) |
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1774 { |
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1775 return false; |
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1776 } |
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1777 else |
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1778 { |
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1779 std::string value = Toolbox::StripSpaces(found->second); |
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1780 Toolbox::RemoveSurroundingQuotes(value); |
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1781 |
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|
1782 try |
|
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1783 { |
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|
1784 size_t comma = value.find('-'); |
|
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1785 if (comma != std::string::npos) |
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1786 { |
|
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1787 revision = boost::lexical_cast<int64_t>(value.substr(0, comma)); |
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1788 md5 = value.substr(comma + 1); |
|
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1789 return true; |
|
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1790 } |
|
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1791 } |
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1792 catch (boost::bad_lexical_cast&) |
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1793 { |
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1794 } |
|
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1795 |
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|
1796 throw OrthancException(ErrorCode_ParameterOutOfRange, "The \"" + header + |
|
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1797 "\" HTTP header should contain the ETag (revision followed by MD5 hash), but found: " + value); |
|
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1798 } |
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1799 } |
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1800 |
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1801 |
| 974 | 1802 static void GetMetadata(RestApiGetCall& call) |
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1803 { |
| 4414 | 1804 if (call.IsDocumentation()) |
| 1805 { | |
| 1806 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1807 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1808 call.GetDocumentation() | |
| 1809 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1810 .SetSummary("Get metadata") | |
| 1811 .SetDescription("Get the value of a metadata that is associated with the given " + r) | |
| 1812 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1813 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
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1814 .AddAnswerType(MimeType_PlainText, "Value of the metadata") |
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1815 .SetAnswerHeader("ETag", "Revision of the metadata, to be used in further `PUT` or `DELETE` operations") |
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1816 .SetHttpHeader("If-None-Match", "Optional revision of the metadata, to check if its content has changed"); |
| 4414 | 1817 return; |
| 1818 } | |
| 1819 | |
|
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1820 assert(!call.GetFullUri().empty()); |
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1821 const std::string publicId = call.GetUriComponent("id", ""); |
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1822 const ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); |
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1823 |
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1824 std::string name = call.GetUriComponent("name", ""); |
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1825 MetadataType metadata = StringToMetadata(name); |
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1826 |
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1827 std::string value; |
|
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1828 int64_t revision; |
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1829 if (OrthancRestApi::GetIndex(call).LookupMetadata(value, revision, publicId, level, metadata)) |
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1830 { |
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1831 SetStringContentETag(call.GetOutput(), revision, value); // New in Orthanc 1.9.2 |
|
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1832 |
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1833 int64_t userRevision; |
|
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1834 std::string userMD5; |
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1835 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
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|
1836 userRevision == revision && |
|
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1837 userMD5 == GetMD5(value)) |
|
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1838 { |
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1839 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
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1840 } |
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1841 else |
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1842 { |
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1843 call.GetOutput().AnswerBuffer(value, MimeType_PlainText); |
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1844 } |
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1845 } |
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1846 } |
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1847 |
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1848 |
| 974 | 1849 static void DeleteMetadata(RestApiDeleteCall& call) |
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|
1850 { |
| 4414 | 1851 if (call.IsDocumentation()) |
| 1852 { | |
| 1853 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1854 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1855 call.GetDocumentation() | |
| 1856 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1857 .SetSummary("Delete metadata") | |
| 1858 .SetDescription("Delete some metadata associated with the given DICOM " + r + | |
| 1859 ". This call will fail if trying to delete a system metadata (i.e. whose index is < 1024).") | |
| 1860 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
|
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1861 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") |
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1862 .SetHttpHeader("If-Match", "Revision of the metadata, to check if its content has not changed and can " |
|
4661
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|
1863 "be deleted. This header is mandatory if `CheckRevisions` option is `true`."); |
| 4414 | 1864 return; |
| 1865 } | |
| 1866 | |
|
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|
1867 CheckValidResourceType(call); |
|
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1868 const std::string publicId = call.GetUriComponent("id", ""); |
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1869 |
|
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|
1870 std::string name = call.GetUriComponent("name", ""); |
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1871 MetadataType metadata = StringToMetadata(name); |
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1872 |
|
1773
613df4362575
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|
1873 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
|
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1874 { |
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1875 bool found; |
|
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1876 int64_t revision; |
|
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|
1877 std::string md5; |
|
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|
1878 if (GetRevisionHeader(revision, md5, call, "if-match")) |
|
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1879 { |
|
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1880 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, true, revision, md5); |
|
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1881 } |
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1882 else |
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1883 { |
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1884 OrthancConfiguration::ReaderLock lock; |
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1885 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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1886 { |
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1887 throw OrthancException(ErrorCode_Revision, |
|
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1888 "HTTP header \"If-Match\" is missing, as \"CheckRevisions\" is \"true\""); |
|
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1889 } |
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1890 else |
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1891 { |
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1892 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, false, -1 /* dummy value */, ""); |
|
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1893 } |
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1894 } |
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1895 |
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1896 if (found) |
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1897 { |
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1898 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1899 } |
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1900 else |
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1901 { |
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1902 throw OrthancException(ErrorCode_UnknownResource); |
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1903 } |
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1904 } |
|
2128
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1905 else |
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1906 { |
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1907 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1908 } |
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1909 } |
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1910 |
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1911 |
| 974 | 1912 static void SetMetadata(RestApiPutCall& call) |
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1913 { |
| 4414 | 1914 if (call.IsDocumentation()) |
| 1915 { | |
| 1916 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1917 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1918 call.GetDocumentation() | |
| 1919 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1920 .SetSummary("Set metadata") | |
| 1921 .SetDescription("Set the value of some metadata in the given DICOM " + r + | |
| 1922 ". This call will fail if trying to modify a system metadata (i.e. whose index is < 1024).") | |
| 1923 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1924 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
|
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1925 .AddRequestType(MimeType_PlainText, "String value of the metadata") |
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1926 .SetHttpHeader("If-Match", "Revision of the metadata, if this is not the first time this metadata is set."); |
| 4414 | 1927 return; |
| 1928 } | |
| 1929 | |
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1930 CheckValidResourceType(call); |
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1931 |
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1932 std::string publicId = call.GetUriComponent("id", ""); |
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1933 std::string name = call.GetUriComponent("name", ""); |
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1934 MetadataType metadata = StringToMetadata(name); |
|
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1935 |
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1936 std::string value; |
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1937 call.BodyToString(value); |
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1938 |
|
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1939 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
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1940 { |
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1941 int64_t oldRevision; |
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1942 std::string oldMD5; |
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1943 bool hasOldRevision = GetRevisionHeader(oldRevision, oldMD5, call, "if-match"); |
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1944 |
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1945 if (!hasOldRevision) |
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1946 { |
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1947 OrthancConfiguration::ReaderLock lock; |
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1948 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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1949 { |
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1950 // "StatelessDatabaseOperations::SetMetadata()" will ignore |
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1951 // the actual value of "oldRevision" if the metadata is |
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1952 // inexistent as expected |
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1953 hasOldRevision = true; |
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1954 oldRevision = -1; // dummy value |
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1955 oldMD5.clear(); // dummy value |
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1956 } |
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1957 } |
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1958 |
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1959 int64_t newRevision; |
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1960 OrthancRestApi::GetIndex(call).SetMetadata(newRevision, publicId, metadata, value, |
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1961 hasOldRevision, oldRevision, oldMD5); |
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1962 |
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1963 SetStringContentETag(call.GetOutput(), newRevision, value); // New in Orthanc 1.9.2 |
|
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1964 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1965 } |
|
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1966 else |
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1967 { |
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1968 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1969 } |
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1970 } |
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1971 |
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1972 |
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1973 |
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1974 |
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1975 // Handling of attached files ----------------------------------------------- |
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1976 |
| 974 | 1977 static void ListAttachments(RestApiGetCall& call) |
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1978 { |
| 4409 | 1979 if (call.IsDocumentation()) |
| 1980 { | |
| 1981 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1982 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1983 call.GetDocumentation() | |
| 1984 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1985 .SetSummary("List attachments") | |
| 1986 .SetDescription("Get the list of attachments that are associated with the given " + r) | |
| 1987 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
|
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1988 .SetHttpGetArgument("full", RestApiCallDocumentation::Type_String, |
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1989 "If present, retrieve the attachments list and their numerical ids", false) |
| 4409 | 1990 .AddAnswerType(MimeType_Json, "JSON array containing the names of the attachments") |
| 1991 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/attachments", true); | |
| 1992 return; | |
| 1993 } | |
| 1994 | |
| 1995 const std::string resourceType = call.GetFullUri() [0]; | |
| 1996 const std::string publicId = call.GetUriComponent("id", ""); | |
|
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1997 std::set<FileContentType> attachments; |
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1998 OrthancRestApi::GetIndex(call).ListAvailableAttachments(attachments, publicId, StringToResourceType(resourceType.c_str())); |
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1999 |
|
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2000 Json::Value result; |
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2001 |
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2002 if (call.HasArgument("full")) |
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2003 { |
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2004 result = Json::objectValue; |
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2005 |
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2006 for (std::set<FileContentType>::const_iterator |
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2007 it = attachments.begin(); it != attachments.end(); ++it) |
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2008 { |
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2009 std::string key = EnumerationToString(*it); |
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2010 result[key] = static_cast<uint16_t>(*it); |
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2011 } |
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2012 } |
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2013 else |
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2014 { |
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2015 result = Json::arrayValue; |
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2016 |
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2017 for (std::set<FileContentType>::const_iterator |
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2018 it = attachments.begin(); it != attachments.end(); ++it) |
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2019 { |
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2020 result.append(EnumerationToString(*it)); |
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2021 } |
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2022 } |
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2023 |
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2024 call.GetOutput().AnswerJson(result); |
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2025 } |
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2026 |
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2027 |
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2028 static void AddAttachmentDocumentation(RestApiGetCall& call, |
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2029 const std::string& resourceType) |
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2030 { |
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2031 call.GetDocumentation() |
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2032 .SetUriArgument("id", "Orthanc identifier of the " + resourceType + " of interest") |
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2033 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
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2034 .SetAnswerHeader("ETag", "Revision of the attachment, to be used in further `PUT` or `DELETE` operations") |
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2035 .SetHttpHeader("If-None-Match", "Optional revision of the attachment, to check if its content has changed"); |
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2036 } |
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2037 |
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2038 |
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2039 static bool GetAttachmentInfo(FileInfo& info, |
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2040 RestApiGetCall& call) |
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2041 { |
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2042 CheckValidResourceType(call); |
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2043 |
|
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2044 const std::string publicId = call.GetUriComponent("id", ""); |
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2045 const std::string name = call.GetUriComponent("name", ""); |
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2046 FileContentType contentType = StringToContentType(name); |
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2047 |
|
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2048 int64_t revision; |
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2049 if (OrthancRestApi::GetIndex(call).LookupAttachment(info, revision, publicId, contentType)) |
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2050 { |
|
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2051 SetAttachmentETag(call.GetOutput(), revision, info); // New in Orthanc 1.9.2 |
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2052 |
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2053 int64_t userRevision; |
|
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2054 std::string userMD5; |
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2055 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
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2056 revision == userRevision && |
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2057 info.GetUncompressedMD5() == userMD5) |
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2058 { |
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2059 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
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2060 return false; |
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2061 } |
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2062 else |
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2063 { |
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2064 return true; |
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2065 } |
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2066 } |
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2067 else |
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2068 { |
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2069 throw OrthancException(ErrorCode_UnknownResource); |
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2070 } |
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2071 } |
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2072 |
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2073 |
| 974 | 2074 static void GetAttachmentOperations(RestApiGetCall& call) |
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2075 { |
| 4409 | 2076 if (call.IsDocumentation()) |
| 2077 { | |
| 2078 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2079 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2080 AddAttachmentDocumentation(call, r); |
| 4409 | 2081 call.GetDocumentation() |
| 2082 .SetTag("Other") | |
| 4414 | 2083 .SetSummary("List operations on attachments") |
| 2084 .SetDescription("Get the list of the operations that are available for attachments associated with the given " + r) | |
| 4409 | 2085 .AddAnswerType(MimeType_Json, "List of the available operations") |
| 2086 .SetHttpGetSample("https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2/attachments/dicom", true); | |
| 2087 return; | |
| 2088 } | |
| 2089 | |
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2090 FileInfo info; |
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2091 if (GetAttachmentInfo(info, call)) |
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2092 { |
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2093 Json::Value operations = Json::arrayValue; |
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2094 |
|
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2095 operations.append("compress"); |
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2096 operations.append("compressed-data"); |
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2097 |
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2098 if (info.GetCompressedMD5() != "") |
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2099 { |
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2100 operations.append("compressed-md5"); |
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2101 } |
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2102 |
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2103 operations.append("compressed-size"); |
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2104 operations.append("data"); |
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2105 operations.append("info"); |
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2106 operations.append("is-compressed"); |
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2107 |
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2108 if (info.GetUncompressedMD5() != "") |
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2109 { |
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2110 operations.append("md5"); |
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2111 } |
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2112 |
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2113 operations.append("size"); |
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2114 operations.append("uncompress"); |
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2115 |
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2116 if (info.GetCompressedMD5() != "" && |
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2117 info.GetUncompressedMD5() != "") |
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2118 { |
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2119 operations.append("verify-md5"); |
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2120 } |
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2121 |
|
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2122 operations.append("uuid"); |
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2123 |
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2124 call.GetOutput().AnswerJson(operations); |
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2125 } |
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2126 } |
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2127 |
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2128 |
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2129 template <int uncompress> |
| 974 | 2130 static void GetAttachmentData(RestApiGetCall& call) |
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2131 { |
| 4409 | 2132 if (call.IsDocumentation()) |
| 2133 { | |
| 2134 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2135 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2136 call.GetDocumentation() | |
| 2137 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2138 .SetSummary("Get attachment" + std::string(uncompress ? "" : " (no decompression)")) | |
| 2139 .SetDescription("Get the (binary) content of one attachment associated with the given " + r + | |
| 4418 | 2140 std::string(uncompress ? "" : ". The attachment will not be decompressed if `StorageCompression` is `true`.")) |
| 4409 | 2141 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 2142 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
|
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2143 .AddAnswerType(MimeType_Binary, "The attachment") |
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2144 .SetAnswerHeader("ETag", "Revision of the attachment, to be used in further `PUT` or `DELETE` operations") |
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2145 .SetHttpHeader("If-None-Match", "Optional revision of the metadata, to check if its content has changed"); |
| 4409 | 2146 return; |
| 2147 } | |
| 2148 | |
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2149 ServerContext& context = OrthancRestApi::GetContext(call); |
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2150 |
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2151 CheckValidResourceType(call); |
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2152 |
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2153 std::string publicId = call.GetUriComponent("id", ""); |
|
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2154 FileContentType type = StringToContentType(call.GetUriComponent("name", "")); |
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2155 |
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2156 FileInfo info; |
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2157 if (GetAttachmentInfo(info, call)) |
|
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2158 { |
|
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2159 // NB: "SetAttachmentETag()" is already invoked by "GetAttachmentInfo()" |
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2160 |
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2161 if (uncompress) |
|
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2162 { |
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2163 context.AnswerAttachment(call.GetOutput(), publicId, type); |
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2164 } |
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2165 else |
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2166 { |
|
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2167 // Return the raw data (possibly compressed), as stored on the filesystem |
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2168 std::string content; |
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|
2169 int64_t revision; |
|
5048
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|
2170 context.ReadAttachment(content, revision, publicId, type, false, true /* skipCache when you absolutely need the compressed data */); |
|
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2171 |
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2172 int64_t userRevision; |
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2173 std::string userMD5; |
|
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2174 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
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66109d24d26e
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|
2175 revision == userRevision && |
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|
2176 info.GetUncompressedMD5() == userMD5) |
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2177 { |
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|
2178 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
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2179 } |
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2180 else |
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2181 { |
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2182 call.GetOutput().AnswerBuffer(content, MimeType_Binary); |
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2183 } |
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2184 } |
|
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2185 } |
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2186 } |
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2187 |
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2188 |
| 974 | 2189 static void GetAttachmentSize(RestApiGetCall& call) |
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2190 { |
| 4409 | 2191 if (call.IsDocumentation()) |
| 2192 { | |
| 2193 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2194 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
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2195 AddAttachmentDocumentation(call, r); |
| 4409 | 2196 call.GetDocumentation() |
| 2197 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2198 .SetSummary("Get size of attachment") | |
| 2199 .SetDescription("Get the size of one attachment associated with the given " + r) | |
| 2200 .AddAnswerType(MimeType_PlainText, "The size of the attachment"); | |
| 2201 return; | |
| 2202 } | |
| 2203 | |
|
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2204 FileInfo info; |
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2205 if (GetAttachmentInfo(info, call)) |
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2206 { |
|
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2207 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedSize()), MimeType_PlainText); |
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2208 } |
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2209 } |
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2210 |
|
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|
2211 static void GetAttachmentInfo(RestApiGetCall& call) |
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2212 { |
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2213 if (call.IsDocumentation()) |
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2214 { |
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2215 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
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2216 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
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2217 AddAttachmentDocumentation(call, r); |
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2218 call.GetDocumentation() |
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2219 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
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2220 .SetSummary("Get info about the attachment") |
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2221 .SetDescription("Get all the information about the attachment associated with the given " + r) |
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2222 .AddAnswerType(MimeType_Json, "JSON object containing the information about the attachment") |
| 5003 | 2223 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/attachments/dicom/info", true); |
|
4883
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2224 return; |
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2225 } |
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2226 |
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|
2227 FileInfo info; |
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2228 if (GetAttachmentInfo(info, call)) |
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2229 { |
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2230 Json::Value result = Json::objectValue; |
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2231 result["Uuid"] = info.GetUuid(); |
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2232 result["ContentType"] = info.GetContentType(); |
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2233 result["UncompressedSize"] = Json::Value::UInt64(info.GetUncompressedSize()); |
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2234 result["CompressedSize"] = Json::Value::UInt64(info.GetCompressedSize()); |
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2235 result["UncompressedMD5"] = info.GetUncompressedMD5(); |
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2236 result["CompressedMD5"] = info.GetCompressedMD5(); |
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2237 |
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2238 call.GetOutput().AnswerJson(result); |
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2239 } |
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2240 } |
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2241 |
| 974 | 2242 static void GetAttachmentCompressedSize(RestApiGetCall& call) |
|
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2243 { |
| 4409 | 2244 if (call.IsDocumentation()) |
| 2245 { | |
| 2246 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2247 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2248 AddAttachmentDocumentation(call, r); |
| 4409 | 2249 call.GetDocumentation() |
| 2250 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 4410 | 2251 .SetSummary("Get size of attachment on disk") |
| 4409 | 2252 .SetDescription("Get the size of one attachment associated with the given " + r + ", as stored on the disk. " |
| 4413 | 2253 "This is different from `.../size` iff `EnableStorage` is `true`.") |
| 4410 | 2254 .AddAnswerType(MimeType_PlainText, "The size of the attachment, as stored on the disk"); |
| 4409 | 2255 return; |
| 2256 } | |
| 2257 | |
|
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2258 FileInfo info; |
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2259 if (GetAttachmentInfo(info, call)) |
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2260 { |
|
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|
2261 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedSize()), MimeType_PlainText); |
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2262 } |
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2263 } |
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2264 |
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2265 |
| 974 | 2266 static void GetAttachmentMD5(RestApiGetCall& call) |
|
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2267 { |
| 4410 | 2268 if (call.IsDocumentation()) |
| 2269 { | |
| 2270 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2271 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
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2272 AddAttachmentDocumentation(call, r); |
| 4410 | 2273 call.GetDocumentation() |
| 2274 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2275 .SetSummary("Get MD5 of attachment") | |
| 2276 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r) | |
| 2277 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment"); | |
| 2278 return; | |
| 2279 } | |
| 2280 | |
|
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2281 FileInfo info; |
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|
2282 if (GetAttachmentInfo(info, call) && |
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2283 info.GetUncompressedMD5() != "") |
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2284 { |
|
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2285 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedMD5()), MimeType_PlainText); |
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2286 } |
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2287 } |
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|
2288 |
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2289 |
| 974 | 2290 static void GetAttachmentCompressedMD5(RestApiGetCall& call) |
|
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|
2291 { |
| 4410 | 2292 if (call.IsDocumentation()) |
| 2293 { | |
| 2294 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2295 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
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|
2296 AddAttachmentDocumentation(call, r); |
| 4410 | 2297 call.GetDocumentation() |
| 2298 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2299 .SetSummary("Get MD5 of attachment on disk") | |
| 2300 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r + ", as stored on the disk. " | |
| 4413 | 2301 "This is different from `.../md5` iff `EnableStorage` is `true`.") |
| 4410 | 2302 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment, as stored on the disk"); |
| 2303 return; | |
| 2304 } | |
| 2305 | |
|
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2306 FileInfo info; |
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2307 if (GetAttachmentInfo(info, call) && |
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|
2308 info.GetCompressedMD5() != "") |
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2309 { |
|
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|
2310 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedMD5()), MimeType_PlainText); |
|
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2311 } |
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|
2312 } |
|
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2313 |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2314 |
| 974 | 2315 static void VerifyAttachment(RestApiPostCall& call) |
|
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|
2316 { |
| 4410 | 2317 if (call.IsDocumentation()) |
| 2318 { | |
| 2319 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2320 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2321 call.GetDocumentation() | |
| 2322 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2323 .SetSummary("Verify attachment") | |
| 2324 .SetDescription("Verify that the attachment is not corrupted, by validating its MD5 hash") | |
| 2325 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 2326 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 2327 .AddAnswerType(MimeType_Json, "On success, a valid JSON object is returned"); |
| 2328 return; | |
| 2329 } | |
| 2330 | |
|
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parents:
diff
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|
2331 ServerContext& context = OrthancRestApi::GetContext(call); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2332 CheckValidResourceType(call); |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2333 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2334 std::string publicId = call.GetUriComponent("id", ""); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2335 std::string name = call.GetUriComponent("name", ""); |
|
4627
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4623
diff
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|
2336 FileContentType contentType = StringToContentType(name); |
|
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|
2337 |
|
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diff
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|
2338 FileInfo info; |
|
4627
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
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|
2339 int64_t revision; // Ignored |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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4623
diff
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|
2340 if (!OrthancRestApi::GetIndex(call).LookupAttachment(info, revision, publicId, contentType) || |
|
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|
2341 info.GetCompressedMD5() == "" || |
|
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parents:
diff
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|
2342 info.GetUncompressedMD5() == "") |
|
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|
2343 { |
|
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|
2344 // Inexistent resource, or no MD5 available |
|
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|
2345 return; |
|
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diff
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|
2346 } |
|
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diff
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|
2347 |
|
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|
2348 bool ok = false; |
|
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|
2349 |
|
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|
2350 // First check whether the compressed data is correctly stored in the disk |
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2351 std::string data; |
|
5048
22966345eaba
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Alain Mazy <am@osimis.io>
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|
2352 context.ReadAttachment(data, revision, publicId, StringToContentType(name), false, true /* skipCache when you absolutely need the compressed data */); |
|
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|
2353 |
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|
2354 std::string actualMD5; |
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|
2355 Toolbox::ComputeMD5(actualMD5, data); |
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|
2356 |
|
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|
2357 if (actualMD5 == info.GetCompressedMD5()) |
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|
2358 { |
|
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|
2359 // The compressed data is OK. If a compression algorithm was |
|
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2360 // applied to it, now check the MD5 of the uncompressed data. |
|
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|
2361 if (info.GetCompressionType() == CompressionType_None) |
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|
2362 { |
|
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|
2363 ok = true; |
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|
2364 } |
|
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|
2365 else |
|
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diff
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|
2366 { |
|
5048
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Alain Mazy <am@osimis.io>
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5003
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|
2367 context.ReadAttachment(data, revision, publicId, StringToContentType(name), true, true /* skipCache when you absolutely need the compressed data */); |
|
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|
2368 Toolbox::ComputeMD5(actualMD5, data); |
|
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2369 ok = (actualMD5 == info.GetUncompressedMD5()); |
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2370 } |
|
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|
2371 } |
|
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|
2372 |
|
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|
2373 if (ok) |
|
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|
2374 { |
|
4294
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4272
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|
2375 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has the right MD5"; |
|
2908
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|
2376 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
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|
2377 } |
|
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|
2378 else |
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|
2379 { |
|
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Alain Mazy <alain@mazy.be>
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|
2380 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has bad MD5!"; |
|
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|
2381 } |
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|
2382 } |
|
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|
2383 |
|
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2384 |
| 974 | 2385 static void UploadAttachment(RestApiPutCall& call) |
|
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|
2386 { |
| 4414 | 2387 if (call.IsDocumentation()) |
| 2388 { | |
| 2389 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2390 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2391 call.GetDocumentation() | |
| 2392 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2393 .SetSummary("Set attachment") | |
| 2394 .SetDescription("Attach a file to the given DICOM " + r + | |
| 2395 ". This call will fail if trying to modify a system attachment (i.e. whose index is < 1024).") | |
| 2396 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 2397 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") | |
| 2398 .AddRequestType(MimeType_Binary, "Binary data containing the attachment") | |
|
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|
2399 .AddAnswerType(MimeType_Json, "Empty JSON object in the case of a success") |
|
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|
2400 .SetHttpHeader("If-Match", "Revision of the attachment, if this is not the first time this attachment is set."); |
| 4414 | 2401 return; |
| 2402 } | |
| 2403 | |
|
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|
2404 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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|
2405 CheckValidResourceType(call); |
|
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|
2406 |
|
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|
2407 std::string publicId = call.GetUriComponent("id", ""); |
|
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|
2408 std::string name = call.GetUriComponent("name", ""); |
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2409 |
|
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|
2410 FileContentType contentType = StringToContentType(name); |
|
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|
2411 if (IsUserContentType(contentType)) // It is forbidden to modify internal attachments |
|
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2412 { |
|
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diff
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|
2413 int64_t oldRevision; |
|
4640
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|
2414 std::string oldMD5; |
|
66109d24d26e
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|
2415 bool hasOldRevision = GetRevisionHeader(oldRevision, oldMD5, call, "if-match"); |
|
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2416 |
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2417 if (!hasOldRevision) |
|
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2418 { |
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2419 OrthancConfiguration::ReaderLock lock; |
|
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|
2420 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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2421 { |
|
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2422 // "StatelessDatabaseOperations::AddAttachment()" will ignore |
|
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2423 // the actual value of "oldRevision" if the metadata is |
|
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2424 // inexistent as expected |
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2425 hasOldRevision = true; |
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|
2426 oldRevision = -1; // dummy value |
|
4640
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|
2427 oldMD5.clear(); // dummy value |
|
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2428 } |
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2429 } |
|
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2430 |
|
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|
2431 int64_t newRevision; |
|
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|
2432 context.AddAttachment(newRevision, publicId, StringToContentType(name), call.GetBodyData(), |
|
4640
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|
2433 call.GetBodySize(), hasOldRevision, oldRevision, oldMD5); |
|
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2434 |
|
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|
2435 SetBufferContentETag(call.GetOutput(), newRevision, call.GetBodyData(), call.GetBodySize()); // New in Orthanc 1.9.2 |
|
2908
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|
2436 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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2437 } |
|
2128
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2438 else |
|
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2127
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|
2439 { |
|
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changeset
|
2440 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
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|
2441 } |
|
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2442 } |
|
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|
2443 |
|
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2444 |
| 974 | 2445 static void DeleteAttachment(RestApiDeleteCall& call) |
|
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|
2446 { |
| 4413 | 2447 if (call.IsDocumentation()) |
| 2448 { | |
| 2449 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2450 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2451 call.GetDocumentation() | |
| 2452 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2453 .SetSummary("Delete attachment") | |
| 4414 | 2454 .SetDescription("Delete an attachment associated with the given DICOM " + r + |
| 2455 ". This call will fail if trying to delete a system attachment (i.e. whose index is < 1024).") | |
| 4413 | 2456 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2457 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2458 .SetHttpHeader("If-Match", "Revision of the attachment, to check if its content has not changed and can " |
|
4661
b1d87d41874e
typo: replaced "CheckRevision" by "CheckRevisions"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4657
diff
changeset
|
2459 "be deleted. This header is mandatory if `CheckRevisions` option is `true`."); |
| 4413 | 2460 return; |
| 2461 } | |
| 2462 | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2463 CheckValidResourceType(call); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2464 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2465 std::string publicId = call.GetUriComponent("id", ""); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2466 std::string name = call.GetUriComponent("name", ""); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2467 FileContentType contentType = StringToContentType(name); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2468 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2469 bool allowed; |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2470 if (IsUserContentType(contentType)) |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2471 { |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2472 allowed = true; |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2473 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2474 else |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2475 { |
|
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2476 OrthancConfiguration::ReaderLock lock; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2477 |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2478 if (lock.GetConfiguration().GetBooleanParameter("StoreDicom", true) && |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2479 contentType == FileContentType_DicomAsJson) |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2480 { |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2481 allowed = true; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2482 } |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2483 else |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2484 { |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2485 // It is forbidden to delete internal attachments, except for |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2486 // the "DICOM as JSON" summary as of Orthanc 1.2.0 (this summary |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2487 // would be automatically reconstructed on the next GET call) |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2488 allowed = false; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2489 } |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2490 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2491 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2492 if (allowed) |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2493 { |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2494 bool found; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2495 int64_t revision; |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2496 std::string md5; |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2497 if (GetRevisionHeader(revision, md5, call, "if-match")) |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2498 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2499 found = OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType, true, revision, md5); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2500 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2501 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2502 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2503 OrthancConfiguration::ReaderLock lock; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2504 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2505 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2506 throw OrthancException(ErrorCode_Revision, |
|
4661
b1d87d41874e
typo: replaced "CheckRevision" by "CheckRevisions"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4657
diff
changeset
|
2507 "HTTP header \"If-Match\" is missing, as \"CheckRevisions\" is \"true\""); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2508 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2509 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2510 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2511 found = OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType, |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2512 false, -1 /* dummy value */, "" /* dummy value */); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2513 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2514 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2515 |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2516 if (found) |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2517 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2518 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2519 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2520 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2521 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2522 throw OrthancException(ErrorCode_UnknownResource); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2523 } |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2524 } |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2525 else |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2526 { |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2527 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2528 } |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2529 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2530 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2531 |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2532 template <enum CompressionType compression> |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2533 static void ChangeAttachmentCompression(RestApiPostCall& call) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2534 { |
| 4413 | 2535 if (call.IsDocumentation()) |
| 2536 { | |
| 2537 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2538 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2539 call.GetDocumentation() | |
| 2540 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2541 .SetSummary(compression == CompressionType_None ? "Uncompress attachment" : "Compress attachment") | |
| 2542 .SetDescription("Change the compression scheme that is used to store an attachment.") | |
| 2543 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 2544 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
| 4413 | 2545 return; |
| 2546 } | |
| 2547 | |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2548 CheckValidResourceType(call); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2549 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2550 std::string publicId = call.GetUriComponent("id", ""); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2551 std::string name = call.GetUriComponent("name", ""); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2552 FileContentType contentType = StringToContentType(name); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2553 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2554 OrthancRestApi::GetContext(call).ChangeAttachmentCompression(publicId, contentType, compression); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2555 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2556 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2557 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2558 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2559 static void IsAttachmentCompressed(RestApiGetCall& call) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2560 { |
| 4413 | 2561 if (call.IsDocumentation()) |
| 2562 { | |
| 2563 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2564 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2565 AddAttachmentDocumentation(call, r); |
| 4413 | 2566 call.GetDocumentation() |
| 2567 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2568 .SetSummary("Is attachment compressed?") | |
| 2569 .SetDescription("Test whether the attachment has been stored as a compressed file on the disk.") | |
| 2570 .AddAnswerType(MimeType_PlainText, "`0` if the attachment was stored uncompressed, `1` if it was compressed"); | |
| 2571 return; | |
| 2572 } | |
| 2573 | |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2574 FileInfo info; |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2575 if (GetAttachmentInfo(info, call)) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2576 { |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2577 std::string answer = (info.GetCompressionType() == CompressionType_None) ? "0" : "1"; |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2578 call.GetOutput().AnswerBuffer(answer, MimeType_PlainText); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2579 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2580 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2581 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2582 |
| 782 | 2583 // Raw access to the DICOM tags of an instance ------------------------------ |
| 2584 | |
| 974 | 2585 static void GetRawContent(RestApiGetCall& call) |
| 782 | 2586 { |
|
4405
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gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2587 if (call.IsDocumentation()) |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2588 { |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2589 call.GetDocumentation() |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2590 .SetTag("Instances") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2591 .SetSummary("Get raw tag") |
|
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gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2592 .SetDescription("Get the raw content of one DICOM tag in the hierarchy of DICOM dataset") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2593 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2594 .SetUriArgument("...", "Path to the DICOM tag. This is the interleaving of one DICOM tag, possibly followed " |
|
5466f336b09f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2595 "by an index for sequences. Sequences are accessible as, for instance, `/0008-1140/1/0008-1150`") |
|
5466f336b09f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2596 .AddAnswerType(MimeType_Binary, "The raw value of the tag of intereset " |
|
5466f336b09f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2597 "(binary data, whose memory layout depends on the underlying transfer syntax), " |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2598 "or JSON array containing the list of available tags if accessing a dataset"); |
|
5466f336b09f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2599 return; |
|
5466f336b09f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2600 } |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2601 |
| 782 | 2602 std::string id = call.GetUriComponent("id", ""); |
| 2603 | |
| 2604 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); | |
| 2605 | |
| 2606 locker.GetDicom().SendPathValue(call.GetOutput(), call.GetTrailingUri()); | |
| 2607 } | |
| 2608 | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2609 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2610 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2611 static bool ExtractSharedTags(Json::Value& shared, |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2612 ServerContext& context, |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2613 const std::string& publicId) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2614 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2615 // Retrieve all the instances of this patient/study/series |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2616 typedef std::list<std::string> Instances; |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2617 Instances instances; |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2618 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2619 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2620 // Loop over the instances |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2621 bool isFirst = true; |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2622 shared = Json::objectValue; |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2623 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2624 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 2625 it != instances.end(); ++it) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2626 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2627 // Get the tags of the current instance, in the simplified format |
|
960
abac5c83134f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2628 Json::Value tags; |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2629 |
|
bd5659f2a50a
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parents:
958
diff
changeset
|
2630 try |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2631 { |
| 2124 | 2632 context.ReadDicomAsJson(tags, *it); |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2633 } |
|
bd5659f2a50a
fix possible race condition
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parents:
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diff
changeset
|
2634 catch (OrthancException&) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2635 { |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2636 // Race condition: This instance has been removed since |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2637 // (*). Ignore this instance. |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2638 continue; |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2639 } |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2640 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2641 if (tags.type() != Json::objectValue) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2642 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2643 return false; // Error |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2644 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2645 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2646 // Only keep the tags that are mapped to a string |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2647 Json::Value::Members members = tags.getMemberNames(); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2648 for (size_t i = 0; i < members.size(); i++) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2649 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2650 const Json::Value& tag = tags[members[i]]; |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2651 if (tag.type() != Json::objectValue || |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2652 tag["Type"].type() != Json::stringValue || |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2653 tag["Type"].asString() != "String") |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2654 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2655 tags.removeMember(members[i]); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2656 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2657 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2658 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2659 if (isFirst) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2660 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2661 // This is the first instance, keep its tags as such |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2662 shared = tags; |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2663 isFirst = false; |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2664 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2665 else |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2666 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2667 // Loop over all the members of the shared tags extracted so |
|
1fbe89dc18b5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2668 // far. If the value of one of these tags does not match its |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2669 // value in the current instance, remove it. |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2670 members = shared.getMemberNames(); |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2671 for (size_t i = 0; i < members.size(); i++) |
|
1fbe89dc18b5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2672 { |
|
960
abac5c83134f
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2673 if (!tags.isMember(members[i]) || |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2674 tags[members[i]]["Value"].asString() != shared[members[i]]["Value"].asString()) |
|
958
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2675 { |
|
1fbe89dc18b5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2676 shared.removeMember(members[i]); |
|
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|
2677 } |
|
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diff
changeset
|
2678 } |
|
1fbe89dc18b5
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diff
changeset
|
2679 } |
|
1fbe89dc18b5
extraction of the shared tags
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changeset
|
2680 } |
|
1fbe89dc18b5
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changeset
|
2681 |
|
960
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diff
changeset
|
2682 return true; |
|
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diff
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|
2683 } |
|
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|
2684 |
|
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diff
changeset
|
2685 |
| 974 | 2686 static void GetSharedTags(RestApiGetCall& call) |
|
960
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diff
changeset
|
2687 { |
|
4416
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diff
changeset
|
2688 if (call.IsDocumentation()) |
|
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diff
changeset
|
2689 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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4694
diff
changeset
|
2690 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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4694
diff
changeset
|
2691 |
|
4416
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changeset
|
2692 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
|
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changeset
|
2693 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
0b27841950d5
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changeset
|
2694 call.GetDocumentation() |
|
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changeset
|
2695 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
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|
2696 .SetSummary("Get shared tags") |
|
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changeset
|
2697 .SetDescription("Extract the DICOM tags whose value is constant across all the child instances of " |
|
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diff
changeset
|
2698 "the DICOM " + r + " whose Orthanc identifier is provided in the URL") |
|
0b27841950d5
openapi about creation of zip/media archives
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parents:
4415
diff
changeset
|
2699 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
2700 .AddAnswerType(MimeType_Json, "JSON object containing the values of the DICOM tags") |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2701 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/shared-tags", 5); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2702 return; |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2703 } |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2704 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
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959
diff
changeset
|
2705 ServerContext& context = OrthancRestApi::GetContext(call); |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2706 std::string publicId = call.GetUriComponent("id", ""); |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2707 |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2708 Json::Value sharedTags; |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2709 if (ExtractSharedTags(sharedTags, context, publicId)) |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2710 { |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2711 // Success: Send the value of the shared tags |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2712 AnswerDicomAsJson(call, sharedTags, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2713 } |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2714 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2715 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2716 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2717 template <enum ResourceType resourceType, |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2718 enum DicomModule module> |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2719 static void GetModule(RestApiGetCall& call) |
|
963
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2720 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2721 if (call.IsDocumentation()) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2722 { |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2723 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2724 std::string m; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2725 switch (module) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2726 { |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2727 case DicomModule_Patient: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2728 m = "patient"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2729 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2730 case DicomModule_Study: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2731 m = "study"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2732 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2733 case DicomModule_Series: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2734 m = "series"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2735 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2736 case DicomModule_Instance: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2737 m = "instance"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2738 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2739 default: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2740 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2741 } |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2742 |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2743 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2744 |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2745 call.GetDocumentation() |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2746 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2747 .SetSummary("Get " + m + " module" + std::string(resource == m ? "" : " of " + resource)) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2748 .SetDescription("Get the " + m + " module of the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2749 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
2750 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2751 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2752 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2753 .SetHttpGetSample(GetDocumentationSampleResource(resourceType) + "/" + (*call.GetFullUri().rbegin()), true); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2754 return; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2755 } |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2756 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2757 if (!((resourceType == ResourceType_Patient && module == DicomModule_Patient) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2758 (resourceType == ResourceType_Study && module == DicomModule_Patient) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2759 (resourceType == ResourceType_Study && module == DicomModule_Study) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2760 (resourceType == ResourceType_Series && module == DicomModule_Series) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2761 (resourceType == ResourceType_Instance && module == DicomModule_Instance) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2762 (resourceType == ResourceType_Instance && module == DicomModule_Image))) |
|
1054
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2763 { |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2764 throw OrthancException(ErrorCode_NotImplemented); |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2765 } |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2766 |
|
963
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2767 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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diff
changeset
|
2768 std::string publicId = call.GetUriComponent("id", ""); |
|
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diff
changeset
|
2769 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2770 std::set<DicomTag> ignoreTagLength; |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
2771 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2772 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2773 typedef std::set<DicomTag> ModuleTags; |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2774 ModuleTags moduleTags; |
| 1368 | 2775 DicomTag::AddTagsForModule(moduleTags, module); |
|
963
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retrieve values of modules
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diff
changeset
|
2776 |
|
81134ea872ff
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diff
changeset
|
2777 Json::Value tags; |
|
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diff
changeset
|
2778 |
|
81134ea872ff
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diff
changeset
|
2779 if (resourceType != ResourceType_Instance) |
|
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diff
changeset
|
2780 { |
|
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diff
changeset
|
2781 // Retrieve all the instances of this patient/study/series |
|
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diff
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|
2782 typedef std::list<std::string> Instances; |
|
81134ea872ff
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diff
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|
2783 Instances instances; |
|
81134ea872ff
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diff
changeset
|
2784 context.GetIndex().GetChildInstances(instances, publicId); |
|
81134ea872ff
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diff
changeset
|
2785 |
|
81134ea872ff
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diff
changeset
|
2786 if (instances.empty()) |
|
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diff
changeset
|
2787 { |
|
81134ea872ff
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diff
changeset
|
2788 return; // Error: No instance (should never happen) |
|
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diff
changeset
|
2789 } |
|
81134ea872ff
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diff
changeset
|
2790 |
|
81134ea872ff
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diff
changeset
|
2791 // Select one child instance |
|
81134ea872ff
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diff
changeset
|
2792 publicId = instances.front(); |
|
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diff
changeset
|
2793 } |
|
81134ea872ff
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parents:
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diff
changeset
|
2794 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2795 context.ReadDicomAsJson(tags, publicId, ignoreTagLength); |
|
963
81134ea872ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2796 |
|
81134ea872ff
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diff
changeset
|
2797 // Filter the tags of the instance according to the module |
|
81134ea872ff
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diff
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|
2798 Json::Value result = Json::objectValue; |
| 1303 | 2799 for (ModuleTags::const_iterator tag = moduleTags.begin(); tag != moduleTags.end(); ++tag) |
|
963
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diff
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|
2800 { |
|
1276
6164f7200c43
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parents:
1201
diff
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|
2801 std::string s = tag->Format(); |
|
963
81134ea872ff
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diff
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|
2802 if (tags.isMember(s)) |
|
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diff
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|
2803 { |
|
81134ea872ff
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diff
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|
2804 result[s] = tags[s]; |
|
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diff
changeset
|
2805 } |
|
81134ea872ff
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|
2806 } |
|
81134ea872ff
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diff
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|
2807 |
|
4697
569d9ef165b1
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2808 AnswerDicomAsJson(call, result, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
963
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|
2809 } |
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|
2810 |
|
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|
2811 |
| 1722 | 2812 namespace |
| 2813 { | |
| 2814 typedef std::list< std::pair<ResourceType, std::string> > LookupResults; | |
| 2815 } | |
| 2816 | |
| 2817 | |
| 2818 static void AccumulateLookupResults(LookupResults& result, | |
|
1718
2b812969e136
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diff
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|
2819 ServerIndex& index, |
|
2b812969e136
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parents:
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diff
changeset
|
2820 const DicomTag& tag, |
|
1719
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fix Orthanc.test_lookup
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parents:
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diff
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|
2821 const std::string& value, |
|
3b1f7e706d38
fix Orthanc.test_lookup
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parents:
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diff
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|
2822 ResourceType level) |
|
1718
2b812969e136
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parents:
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diff
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|
2823 { |
|
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2824 std::vector<std::string> tmp; |
|
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1727
diff
changeset
|
2825 index.LookupIdentifierExact(tmp, level, tag, value); |
|
1719
3b1f7e706d38
fix Orthanc.test_lookup
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parents:
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diff
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|
2826 |
|
3034
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diff
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|
2827 for (size_t i = 0; i < tmp.size(); i++) |
|
1719
3b1f7e706d38
fix Orthanc.test_lookup
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|
2828 { |
|
3034
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moving LookupResource to graveyard
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parents:
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diff
changeset
|
2829 result.push_back(std::make_pair(level, tmp[i])); |
|
1719
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fix Orthanc.test_lookup
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parents:
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diff
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|
2830 } |
|
1718
2b812969e136
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diff
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|
2831 } |
|
2b812969e136
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diff
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|
2832 |
|
2b812969e136
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diff
changeset
|
2833 |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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parents:
1054
diff
changeset
|
2834 static void Lookup(RestApiPostCall& call) |
|
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diff
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|
2835 { |
| 4422 | 2836 if (call.IsDocumentation()) |
| 2837 { | |
| 2838 call.GetDocumentation() | |
| 2839 .SetTag("System") | |
| 2840 .SetSummary("Look for DICOM identifiers") | |
| 2841 .SetDescription("This URI can be used to convert one DICOM identifier to a list of matching Orthanc resources") | |
| 2842 .AddRequestType(MimeType_PlainText, "The DICOM identifier of interest (i.e. the value of `PatientID`, " | |
| 2843 "`StudyInstanceUID`, `SeriesInstanceUID`, or `SOPInstanceUID`)") | |
| 2844 .AddAnswerType(MimeType_Json, "JSON array containing a list of matching Orthanc resources, each item in the " | |
| 2845 "list corresponding to a JSON object with the fields `Type`, `ID` and `Path` identifying one " | |
| 2846 "DICOM resource that is stored by Orthanc"); | |
| 2847 return; | |
| 2848 } | |
| 2849 | |
|
1446
8dc80ba768aa
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diff
changeset
|
2850 std::string tag; |
|
8dc80ba768aa
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diff
changeset
|
2851 call.BodyToString(tag); |
|
1139
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diff
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|
2852 |
| 1722 | 2853 LookupResults resources; |
|
1718
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diff
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|
2854 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
1719
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fix Orthanc.test_lookup
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parents:
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diff
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|
2855 AccumulateLookupResults(resources, index, DICOM_TAG_PATIENT_ID, tag, ResourceType_Patient); |
|
3b1f7e706d38
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diff
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|
2856 AccumulateLookupResults(resources, index, DICOM_TAG_STUDY_INSTANCE_UID, tag, ResourceType_Study); |
|
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fix Orthanc.test_lookup
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parents:
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diff
changeset
|
2857 AccumulateLookupResults(resources, index, DICOM_TAG_SERIES_INSTANCE_UID, tag, ResourceType_Series); |
|
3b1f7e706d38
fix Orthanc.test_lookup
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parents:
1718
diff
changeset
|
2858 AccumulateLookupResults(resources, index, DICOM_TAG_SOP_INSTANCE_UID, tag, ResourceType_Instance); |
|
1718
2b812969e136
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parents:
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diff
changeset
|
2859 |
|
2b812969e136
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parents:
1703
diff
changeset
|
2860 Json::Value result = Json::arrayValue; |
| 1722 | 2861 for (LookupResults::const_iterator |
|
1718
2b812969e136
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2862 it = resources.begin(); it != resources.end(); ++it) |
|
1139
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|
2863 { |
|
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diff
changeset
|
2864 ResourceType type = it->first; |
|
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|
2865 const std::string& id = it->second; |
|
f167b672db94
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|
2866 |
|
f167b672db94
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diff
changeset
|
2867 Json::Value item = Json::objectValue; |
|
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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diff
changeset
|
2868 item["Type"] = EnumerationToString(type); |
|
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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diff
changeset
|
2869 item["ID"] = id; |
|
f167b672db94
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diff
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|
2870 item["Path"] = GetBasePath(type, id); |
|
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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diff
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|
2871 |
|
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/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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parents:
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diff
changeset
|
2872 result.append(item); |
|
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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|
2873 } |
|
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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|
2874 |
|
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
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changeset
|
2875 call.GetOutput().AnswerJson(result); |
|
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|
2876 } |
|
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changeset
|
2877 |
|
f167b672db94
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diff
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|
2878 |
|
3001
7695a9c81099
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diff
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|
2879 namespace |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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diff
changeset
|
2880 { |
|
3021
2cbafb5d5a62
renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
2881 class FindVisitor : public ServerContext::ILookupVisitor |
|
3001
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|
2882 { |
|
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|
2883 private: |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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changeset
|
2884 bool isComplete_; |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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diff
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|
2885 std::list<std::string> resources_; |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
2886 FindStorageAccessMode findStorageAccessMode_; |
|
4937
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include requested tags from storage if needed
Alain Mazy <am@osimis.io>
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4936
diff
changeset
|
2887 |
|
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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4936
diff
changeset
|
2888 // cache the data we used during lookup and that we could reuse when building the answers |
|
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
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4936
diff
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|
2889 std::map<std::string, std::string> instancesIds_; // the id of an instance for each found resource. |
|
3f9b9865c8cc
include requested tags from storage if needed
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diff
changeset
|
2890 std::map<std::string, boost::shared_ptr<DicomMap> > resourcesMainDicomTags_; // all tags read from DB for a resource (current level and upper levels) |
|
5060
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2891 std::map<std::string, boost::shared_ptr<Json::Value> > resourcesDicomAsJson_; // the dicom-as-json for a resource |
|
4937
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|
2892 |
|
4697
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|
2893 DicomToJsonFormat format_; |
|
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2894 |
|
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|
2895 public: |
|
5058
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diff
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|
2896 explicit FindVisitor(DicomToJsonFormat format, FindStorageAccessMode findStorageAccessMode) : |
|
4697
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|
2897 isComplete_(false), |
|
5058
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diff
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|
2898 findStorageAccessMode_(findStorageAccessMode), |
|
4697
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|
2899 format_(format) |
|
3001
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|
2900 { |
|
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|
2901 } |
| 4205 | 2902 |
| 2903 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
|
3012
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2904 { |
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|
2905 return false; // (*) |
|
af1530b45290
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2906 } |
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|
2907 |
| 4205 | 2908 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
|
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|
2909 { |
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|
2910 isComplete_ = true; // Unused information as of Orthanc 1.5.0 |
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2911 } |
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2912 |
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|
2913 virtual void Visit(const std::string& publicId, |
|
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|
2914 const std::string& instanceId, |
|
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|
2915 const DicomMap& mainDicomTags, |
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|
2916 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
|
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|
2917 { |
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changeset
|
2918 resources_.push_back(publicId); |
|
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changeset
|
2919 instancesIds_[publicId] = instanceId; |
|
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2920 resourcesMainDicomTags_[publicId].reset(mainDicomTags.Clone()); |
|
5060
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2921 if (dicomAsJson != NULL) |
|
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2922 { |
|
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2923 resourcesDicomAsJson_[publicId].reset(new Json::Value(*dicomAsJson)); // keep our own copy because we might reuse it between lookup and answers |
|
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2924 } |
|
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2925 else |
|
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2926 { |
|
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2927 resourcesDicomAsJson_[publicId] = boost::shared_ptr<Json::Value>(); |
|
e69a3ff39bc5
fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents:
5058
diff
changeset
|
2928 } |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2929 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2930 |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2931 void Answer(RestApiOutput& output, |
|
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2932 ServerContext& context, |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2933 ResourceType level, |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2934 bool expand, |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2935 const std::set<DicomTag>& requestedTags) const |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2936 { |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
2937 AnswerListOfResources(output, context, resources_, instancesIds_, resourcesMainDicomTags_, resourcesDicomAsJson_, level, expand, format_, requestedTags, IsStorageAccessAllowedForAnswers(findStorageAccessMode_)); |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2938 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2939 }; |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2940 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2941 |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2942 |
| 1354 | 2943 static void Find(RestApiPostCall& call) |
| 2944 { | |
| 2998 | 2945 static const char* const KEY_CASE_SENSITIVE = "CaseSensitive"; |
| 2946 static const char* const KEY_EXPAND = "Expand"; | |
| 2947 static const char* const KEY_LEVEL = "Level"; | |
| 2948 static const char* const KEY_LIMIT = "Limit"; | |
| 2949 static const char* const KEY_QUERY = "Query"; | |
|
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2950 static const char* const KEY_REQUESTED_TAGS = "RequestedTags"; |
| 2998 | 2951 static const char* const KEY_SINCE = "Since"; |
| 2952 | |
| 4421 | 2953 if (call.IsDocumentation()) |
| 2954 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2955 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2956 |
| 4421 | 2957 call.GetDocumentation() |
| 2958 .SetTag("System") | |
| 2959 .SetSummary("Look for local resources") | |
| 2960 .SetDescription("This URI can be used to perform a search on the content of the local Orthanc server, " | |
| 2961 "in a way that is similar to querying remote DICOM modalities using C-FIND SCU: " | |
| 2962 "https://book.orthanc-server.com/users/rest.html#performing-finds-within-orthanc") | |
| 2963 .SetRequestField(KEY_CASE_SENSITIVE, RestApiCallDocumentation::Type_Boolean, | |
| 2964 "Enable case-sensitive search for PN value representations (defaults to configuration option `CaseSensitivePN`)", false) | |
| 2965 .SetRequestField(KEY_EXPAND, RestApiCallDocumentation::Type_Boolean, | |
| 2966 "Also retrieve the content of the matching resources, not only their Orthanc identifiers", false) | |
| 2967 .SetRequestField(KEY_LEVEL, RestApiCallDocumentation::Type_String, | |
| 2968 "Level of the query (`Patient`, `Study`, `Series` or `Instance`)", true) | |
| 2969 .SetRequestField(KEY_LIMIT, RestApiCallDocumentation::Type_Number, | |
| 2970 "Limit the number of reported resources", false) | |
| 2971 .SetRequestField(KEY_SINCE, RestApiCallDocumentation::Type_Number, | |
| 2972 "Show only the resources since the provided index (in conjunction with `Limit`)", false) | |
|
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2973 .SetRequestField(KEY_REQUESTED_TAGS, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2974 "A list of DICOM tags to include in the response (applicable only if \"Expand\" is set to true). " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2975 "The tags requested tags are returned in the 'RequestedTags' field in the response. " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2976 "Note that, if you are requesting tags that are not listed in the Main Dicom Tags stored in DB, building the response " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2977 "might be slow since Orthanc will need to access the DICOM files. If not specified, Orthanc will return " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2978 "all Main Dicom Tags to keep backward compatibility with Orthanc prior to 1.11.0.", false) |
| 4421 | 2979 .SetRequestField(KEY_QUERY, RestApiCallDocumentation::Type_JsonObject, |
| 2980 "Associative array containing the filter on the values of the DICOM tags", true) | |
| 2981 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " | |
| 2982 "about the reported resources (if `Expand` argument is `true`)"); | |
| 2983 return; | |
| 2984 } | |
| 2985 | |
| 1358 | 2986 ServerContext& context = OrthancRestApi::GetContext(call); |
| 1354 | 2987 |
| 2988 Json::Value request; | |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2989 if (!call.ParseJsonRequest(request) || |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2990 request.type() != Json::objectValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2991 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2992 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2993 "The body must contain a JSON object"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2994 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2995 else if (!request.isMember(KEY_LEVEL) || |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2996 request[KEY_LEVEL].type() != Json::stringValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2997 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2998 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2999 "Field \"" + std::string(KEY_LEVEL) + "\" is missing, or should be a string"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3000 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3001 else if (!request.isMember(KEY_QUERY) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3002 request[KEY_QUERY].type() != Json::objectValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3003 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3004 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3005 "Field \"" + std::string(KEY_QUERY) + "\" is missing, or should be a JSON object"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3006 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3007 else if (request.isMember(KEY_CASE_SENSITIVE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3008 request[KEY_CASE_SENSITIVE].type() != Json::booleanValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3009 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3010 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3011 "Field \"" + std::string(KEY_CASE_SENSITIVE) + "\" should be a Boolean"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3012 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3013 else if (request.isMember(KEY_LIMIT) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3014 request[KEY_LIMIT].type() != Json::intValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3015 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3016 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3017 "Field \"" + std::string(KEY_LIMIT) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3018 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3019 else if (request.isMember(KEY_SINCE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3020 request[KEY_SINCE].type() != Json::intValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3021 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3022 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3023 "Field \"" + std::string(KEY_SINCE) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3024 } |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3025 else if (request.isMember(KEY_REQUESTED_TAGS) && |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3026 request[KEY_REQUESTED_TAGS].type() != Json::arrayValue) |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3027 { |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3028 throw OrthancException(ErrorCode_BadRequest, |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3029 "Field \"" + std::string(KEY_REQUESTED_TAGS) + "\" should be an array"); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3030 } |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3031 else |
| 1354 | 3032 { |
| 3033 bool expand = false; | |
| 2998 | 3034 if (request.isMember(KEY_EXPAND)) |
| 1354 | 3035 { |
| 2998 | 3036 expand = request[KEY_EXPAND].asBool(); |
| 1354 | 3037 } |
| 3038 | |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3039 bool caseSensitive = false; |
| 2998 | 3040 if (request.isMember(KEY_CASE_SENSITIVE)) |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3041 { |
| 2998 | 3042 caseSensitive = request[KEY_CASE_SENSITIVE].asBool(); |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3043 } |
|
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3044 |
| 1758 | 3045 size_t limit = 0; |
| 2998 | 3046 if (request.isMember(KEY_LIMIT)) |
| 1758 | 3047 { |
| 2998 | 3048 int tmp = request[KEY_LIMIT].asInt(); |
| 1847 | 3049 if (tmp < 0) |
| 1758 | 3050 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3051 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3052 "Field \"" + std::string(KEY_LIMIT) + "\" should be a positive integer"); |
| 1758 | 3053 } |
| 1847 | 3054 |
| 3055 limit = static_cast<size_t>(tmp); | |
| 1758 | 3056 } |
| 3057 | |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3058 size_t since = 0; |
| 2998 | 3059 if (request.isMember(KEY_SINCE)) |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3060 { |
| 2998 | 3061 int tmp = request[KEY_SINCE].asInt(); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3062 if (tmp < 0) |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3063 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3064 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3065 "Field \"" + std::string(KEY_SINCE) + "\" should be a positive integer"); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3066 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3067 |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3068 since = static_cast<size_t>(tmp); |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3069 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3070 |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3071 std::set<DicomTag> requestedTags; |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3072 |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3073 if (request.isMember(KEY_REQUESTED_TAGS)) |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3074 { |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3075 FromDcmtkBridge::ParseListOfTags(requestedTags, request[KEY_REQUESTED_TAGS]); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3076 } |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3077 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
3078 ResourceType level = StringToResourceType(request[KEY_LEVEL].asCString()); |
| 1360 | 3079 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
3080 DatabaseLookup query; |
| 1358 | 3081 |
| 2998 | 3082 Json::Value::Members members = request[KEY_QUERY].getMemberNames(); |
| 1354 | 3083 for (size_t i = 0; i < members.size(); i++) |
| 3084 { | |
| 2998 | 3085 if (request[KEY_QUERY][members[i]].type() != Json::stringValue) |
| 1354 | 3086 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3087 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3088 "Tag \"" + members[i] + "\" should be associated with a string"); |
| 1354 | 3089 } |
| 3090 | |
|
3163
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3091 const std::string value = request[KEY_QUERY][members[i]].asString(); |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3092 |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3093 if (!value.empty()) |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3094 { |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3095 // An empty string corresponds to an universal constraint, |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3096 // so we ignore it. This mimics the behavior of class |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3097 // "OrthancFindRequestHandler" |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3098 query.AddRestConstraint(FromDcmtkBridge::ParseTag(members[i]), |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3099 value, caseSensitive, true); |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3100 } |
|
1361
94ffb597d297
refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1360
diff
changeset
|
3101 } |
| 2876 | 3102 |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3103 FindVisitor visitor(OrthancRestApi::GetDicomFormat(request, DicomToJsonFormat_Human), context.GetFindStorageAccessMode()); |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
3104 context.Apply(visitor, query, level, since, limit); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3105 visitor.Answer(call.GetOutput(), context, level, expand, requestedTags); |
| 1354 | 3106 } |
| 3107 } | |
| 3108 | |
| 3109 | |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3110 template <enum ResourceType start, |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3111 enum ResourceType end> |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3112 static void GetChildResources(RestApiGetCall& call) |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3113 { |
| 4415 | 3114 if (call.IsDocumentation()) |
| 3115 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3116 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3117 OrthancRestApi::DocumentRequestedTags(call); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3118 |
| 4415 | 3119 const std::string children = GetResourceTypeText(end, true /* plural */, false /* lower case */); |
| 3120 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 3121 call.GetDocumentation() | |
| 3122 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 3123 .SetSummary("Get child " + children) | |
| 3124 .SetDescription("Get detailed information about the child " + children + " of the DICOM " + | |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3125 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 3126 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 3127 .AddAnswerType(MimeType_Json, "JSON array containing information about the child DICOM " + children) | |
| 3128 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + children, 5); | |
| 3129 return; | |
| 3130 } | |
| 3131 | |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3132 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3133 |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3134 std::set<DicomTag> requestedTags; |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3135 OrthancRestApi::GetRequestedTags(requestedTags, call); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3136 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3137 std::list<std::string> a, b, c; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3138 a.push_back(call.GetUriComponent("id", "")); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3139 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3140 ResourceType type = start; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3141 while (type != end) |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3142 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3143 b.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3144 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3145 for (std::list<std::string>::const_iterator |
| 1303 | 3146 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3147 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3148 index.GetChildren(c, *it); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3149 b.splice(b.begin(), c); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3150 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3151 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
3152 type = GetChildResourceType(type); |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3153 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3154 a.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3155 a.splice(a.begin(), b); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3156 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3157 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3158 Json::Value result = Json::arrayValue; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3159 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3160 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3161 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3162 for (std::list<std::string>::const_iterator |
| 1303 | 3163 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3164 { |
| 4554 | 3165 Json::Value resource; |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3166 if (OrthancRestApi::GetContext(call).ExpandResource(resource, *it, end, format, requestedTags, true /* allowStorageAccess */)) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3167 { |
| 4554 | 3168 result.append(resource); |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3169 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3170 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3171 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3172 call.GetOutput().AnswerJson(result); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3173 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3174 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3175 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3176 static void GetChildInstancesTags(RestApiGetCall& call) |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3177 { |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3178 if (call.IsDocumentation()) |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3179 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3180 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3181 |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3182 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
|
0b27841950d5
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parents:
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diff
changeset
|
3183 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
0b27841950d5
openapi about creation of zip/media archives
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parents:
4415
diff
changeset
|
3184 call.GetDocumentation() |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3185 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
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|
3186 .SetSummary("Get tags of instances") |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3187 .SetDescription("Get the tags of all the child instances of the DICOM " + r + |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3188 " whose Orthanc identifier is provided in the URL") |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3189 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
3190 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4416
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3191 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3192 .AddAnswerType(MimeType_Json, "JSON object associating the Orthanc identifiers of the instances, with the values of their DICOM tags") |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3193 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/instances-tags", 5); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3194 return; |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3195 } |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3196 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3197 ServerContext& context = OrthancRestApi::GetContext(call); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3198 std::string publicId = call.GetUriComponent("id", ""); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3199 DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full); |
|
1166
a921e3b5e763
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3200 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3201 std::set<DicomTag> ignoreTagLength; |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
3202 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3203 |
|
1166
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
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|
3204 // Retrieve all the instances of this patient/study/series |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
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|
3205 typedef std::list<std::string> Instances; |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3206 Instances instances; |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3207 |
|
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3208 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3209 |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3210 Json::Value result = Json::objectValue; |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3211 |
|
a921e3b5e763
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3212 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 3213 it != instances.end(); ++it) |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3214 { |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3215 Json::Value full; |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3216 context.ReadDicomAsJson(full, *it, ignoreTagLength); |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3217 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
3218 if (format != DicomToJsonFormat_Full) |
|
1166
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3219 { |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3220 Json::Value simplified; |
|
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4045
diff
changeset
|
3221 Toolbox::SimplifyDicomAsJson(simplified, full, format); |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3222 result[*it] = simplified; |
|
1166
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3223 } |
|
a921e3b5e763
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Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3224 else |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3225 { |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3226 result[*it] = full; |
|
1166
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3227 } |
|
a921e3b5e763
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3228 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3229 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3230 call.GetOutput().AnswerJson(result); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
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|
3231 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3232 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3233 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3234 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3235 template <enum ResourceType start, |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3236 enum ResourceType end> |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3237 static void GetParentResource(RestApiGetCall& call) |
|
8dac11c78d71
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3238 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3239 assert(start > end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3240 |
| 4415 | 3241 if (call.IsDocumentation()) |
| 3242 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3243 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3244 OrthancRestApi::DocumentRequestedTags(call); |
|
4697
569d9ef165b1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3245 |
| 4415 | 3246 const std::string parent = GetResourceTypeText(end, false /* plural */, false /* lower case */); |
| 3247 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 3248 call.GetDocumentation() | |
| 3249 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 3250 .SetSummary("Get parent " + parent) | |
| 3251 .SetDescription("Get detailed information about the parent " + parent + " of the DICOM " + | |
|
4416
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4415
diff
changeset
|
3252 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 3253 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 3254 .AddAnswerType(MimeType_Json, "Information about the parent DICOM " + parent) | |
| 3255 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + parent, 10); | |
| 3256 return; | |
| 3257 } | |
| 3258 | |
|
1281
8dac11c78d71
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Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3259 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3260 |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3261 std::set<DicomTag> requestedTags; |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3262 OrthancRestApi::GetRequestedTags(requestedTags, call); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3263 |
|
1281
8dac11c78d71
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diff
changeset
|
3264 std::string current = call.GetUriComponent("id", ""); |
|
8dac11c78d71
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diff
changeset
|
3265 ResourceType currentType = start; |
|
8dac11c78d71
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diff
changeset
|
3266 while (currentType > end) |
|
8dac11c78d71
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diff
changeset
|
3267 { |
|
8dac11c78d71
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diff
changeset
|
3268 std::string parent; |
|
8dac11c78d71
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diff
changeset
|
3269 if (!index.LookupParent(parent, current)) |
|
8dac11c78d71
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diff
changeset
|
3270 { |
|
8dac11c78d71
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diff
changeset
|
3271 // Error that could happen if the resource gets deleted by |
|
8dac11c78d71
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diff
changeset
|
3272 // another concurrent call |
|
8dac11c78d71
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diff
changeset
|
3273 return; |
|
8dac11c78d71
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3274 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3275 |
|
8dac11c78d71
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parents:
1276
diff
changeset
|
3276 current = parent; |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
3277 currentType = GetParentResourceType(currentType); |
|
1281
8dac11c78d71
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diff
changeset
|
3278 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3279 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3280 assert(currentType == end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3281 |
|
4697
569d9ef165b1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3282 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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4694
diff
changeset
|
3283 |
| 4554 | 3284 Json::Value resource; |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3285 if (OrthancRestApi::GetContext(call).ExpandResource(resource, current, end, format, requestedTags, true /* allowStorageAccess */)) |
|
1281
8dac11c78d71
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diff
changeset
|
3286 { |
| 4554 | 3287 call.GetOutput().AnswerJson(resource); |
|
1281
8dac11c78d71
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diff
changeset
|
3288 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3289 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3290 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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1276
diff
changeset
|
3291 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3292 static void ExtractPdf(RestApiGetCall& call) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3293 { |
| 4407 | 3294 if (call.IsDocumentation()) |
| 3295 { | |
| 3296 call.GetDocumentation() | |
| 3297 .SetTag("Instances") | |
| 3298 .SetSummary("Get embedded PDF") | |
| 3299 .SetDescription("Get the PDF file that is embedded in one DICOM instance. " | |
| 3300 "If the DICOM instance doesn't contain the `EncapsulatedDocument` tag or if the " | |
| 3301 "`MIMETypeOfEncapsulatedDocument` tag doesn't correspond to the PDF type, a `404` HTTP error is raised.") | |
| 3302 .SetUriArgument("id", "Orthanc identifier of the instance interest") | |
| 3303 .AddAnswerType(MimeType_Pdf, "PDF file"); | |
| 3304 return; | |
| 3305 } | |
| 3306 | |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3307 const std::string id = call.GetUriComponent("id", ""); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3308 std::string pdf; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3309 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3310 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3311 if (locker.GetDicom().ExtractPdf(pdf)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3312 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3313 call.GetOutput().AnswerBuffer(pdf, MimeType_Pdf); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3314 return; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3315 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3316 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3317 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3318 |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3319 static void OrderSlices(RestApiGetCall& call) |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3320 { |
| 4421 | 3321 if (call.IsDocumentation()) |
| 3322 { | |
| 3323 call.GetDocumentation() | |
| 3324 .SetDeprecated() | |
| 3325 .SetTag("Series") | |
| 3326 .SetSummary("Order the slices") | |
| 3327 .SetDescription("Sort the instances and frames (slices) of the DICOM series whose Orthanc identifier is provided in the URL. " | |
| 3328 "This URI is essentially used by the Orthanc Web viewer and by the Osimis Web viewer.") | |
| 3329 .SetUriArgument("id", "Orthanc identifier of the series of interest") | |
| 3330 .SetAnswerField("Dicom", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 3331 "Ordered list of paths to DICOM instances") | |
| 3332 .SetAnswerField("Slices", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 3333 "Ordered list of paths to frames. It is recommended to use this field, as it is also valid " | |
| 3334 "in the case of multiframe images.") | |
| 3335 .SetAnswerField("SlicesShort", RestApiCallDocumentation::Type_JsonListOfObjects, | |
| 3336 "Same information as the `Slices` field, but in a compact form") | |
| 3337 .SetAnswerField("Type", RestApiCallDocumentation::Type_String, | |
| 3338 "Can be `Volume` (for 3D volumes) or `Sequence` (notably for cine images)") | |
| 3339 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/series/1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0/ordered-slices", 10); | |
| 3340 return; | |
| 3341 } | |
| 3342 | |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3343 const std::string id = call.GetUriComponent("id", ""); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3344 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3345 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3346 SliceOrdering ordering(index, id); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3347 |
|
1703
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3348 Json::Value result; |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3349 ordering.Format(result); |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3350 call.GetOutput().AnswerJson(result); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3351 } |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3352 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3353 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3354 static void GetInstanceHeader(RestApiGetCall& call) |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3355 { |
| 4404 | 3356 if (call.IsDocumentation()) |
| 3357 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3358 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
| 4404 | 3359 call.GetDocumentation() |
| 3360 .SetTag("Instances") | |
| 3361 .SetSummary("Get DICOM meta-header") | |
| 3362 .SetDescription("Get the DICOM tags in the meta-header of the DICOM instance. By default, the `full` format is used, which " | |
| 3363 "combines hexadecimal tags with human-readable description.") | |
| 3364 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 3365 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 3366 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/header", true); | |
| 3367 return; | |
| 3368 } | |
| 3369 | |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3370 ServerContext& context = OrthancRestApi::GetContext(call); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3371 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3372 std::string publicId = call.GetUriComponent("id", ""); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3373 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3374 std::string dicomContent; |
|
4792
434843934307
Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
3375 context.ReadDicomForHeader(dicomContent, publicId); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3376 |
|
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3377 // TODO Consider using "DicomMap::ParseDicomMetaInformation()" to |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3378 // speed up things here |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3379 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3380 ParsedDicomFile dicom(dicomContent); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3381 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3382 Json::Value header; |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
3383 OrthancConfiguration::DefaultDicomHeaderToJson(header, dicom); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3384 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3385 AnswerDicomAsJson(call, header, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3386 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3387 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3388 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3389 static void InvalidateTags(RestApiPostCall& call) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3390 { |
| 4420 | 3391 if (call.IsDocumentation()) |
| 3392 { | |
| 3393 call.GetDocumentation() | |
| 3394 .SetTag("System") | |
| 3395 .SetSummary("Invalidate DICOM-as-JSON summaries") | |
| 3396 .SetDescription("Remove all the attachments of the type \"DICOM-as-JSON\" that are associated will all the " | |
| 3397 "DICOM instances stored in Orthanc. These summaries will be automatically re-created on the next access. " | |
| 3398 "This is notably useful after changes to the `Dictionary` configuration option. " | |
| 3399 "https://book.orthanc-server.com/faq/orthanc-storage.html#storage-area"); | |
| 3400 return; | |
| 3401 } | |
| 3402 | |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3403 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3404 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3405 // Loop over the instances, grouping them by parent studies so as |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3406 // to avoid large memory consumption |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3407 std::list<std::string> studies; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3408 index.GetAllUuids(studies, ResourceType_Study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3409 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3410 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3411 study = studies.begin(); study != studies.end(); ++study) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3412 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3413 std::list<std::string> instances; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3414 index.GetChildInstances(instances, *study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3415 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3416 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3417 instance = instances.begin(); instance != instances.end(); ++instance) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3418 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
3419 index.DeleteAttachment(*instance, FileContentType_DicomAsJson, |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
3420 false /* no revision checks */, -1 /* dummy */, "" /* dummy */); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3421 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3422 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3423 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3424 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3425 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3426 |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3427 void DocumentReconstructFilesField(RestApiPostCall& call) |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3428 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3429 call.GetDocumentation() |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3430 .SetRequestField(RECONSTRUCT_FILES, RestApiCallDocumentation::Type_Boolean, |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3431 "Also reconstruct the files of the resources (e.g: apply IngestTranscoding, StorageCompression). " |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3432 "'false' by default. (New in Orthanc 1.11.0)", false); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3433 } |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3434 |
| 4994 | 3435 bool GetReconstructFilesField(const RestApiPostCall& call) |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3436 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3437 bool reconstructFiles = false; |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3438 Json::Value request; |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3439 |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3440 if (call.GetBodySize() > 0 && call.ParseJsonRequest(request) && request.isMember(RECONSTRUCT_FILES)) // allow "" payload to keep backward compatibility |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3441 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3442 if (!request[RECONSTRUCT_FILES].isBool()) |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3443 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3444 throw OrthancException(ErrorCode_BadFileFormat, |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3445 "The field " + std::string(RECONSTRUCT_FILES) + " must contain a Boolean"); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3446 } |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3447 |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3448 reconstructFiles = request[RECONSTRUCT_FILES].asBool(); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3449 } |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3450 |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3451 return reconstructFiles; |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3452 } |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3453 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3454 template <enum ResourceType type> |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3455 static void ReconstructResource(RestApiPostCall& call) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3456 { |
| 4420 | 3457 if (call.IsDocumentation()) |
| 3458 { | |
| 3459 const std::string resource = GetResourceTypeText(type, false /* plural */, false /* lower case */); | |
| 3460 call.GetDocumentation() | |
| 3461 .SetTag(GetResourceTypeText(type, true /* plural */, true /* upper case */)) | |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3462 .SetSummary("Reconstruct tags & optionally files of " + resource) |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3463 .SetDescription("Reconstruct the main DICOM tags in DB of the " + resource + " whose Orthanc identifier is provided " |
| 4420 | 3464 "in the URL. This is useful if child studies/series/instances have inconsistent values for " |
| 3465 "higher-level tags, in order to force Orthanc to use the value from the resource of interest. " | |
| 3466 "Beware that this is a time-consuming operation, as all the children DICOM instances will be " | |
| 3467 "parsed again, and the Orthanc index will be updated accordingly.") | |
| 3468 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); | |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3469 DocumentReconstructFilesField(call); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3470 |
| 4420 | 3471 return; |
| 3472 } | |
| 3473 | |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3474 ServerContext& context = OrthancRestApi::GetContext(call); |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3475 ServerToolbox::ReconstructResource(context, call.GetUriComponent("id", ""), GetReconstructFilesField(call)); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3476 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3477 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3478 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3479 |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3480 static void ReconstructAllResources(RestApiPostCall& call) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3481 { |
| 4420 | 3482 if (call.IsDocumentation()) |
| 3483 { | |
| 3484 call.GetDocumentation() | |
| 3485 .SetTag("System") | |
| 3486 .SetSummary("Reconstruct all the index") | |
| 3487 .SetDescription("Reconstruct the index of all the tags of all the DICOM instances that are stored in Orthanc. " | |
| 3488 "This is notably useful after the deletion of resources whose children resources have inconsistent " | |
| 3489 "values with their sibling resources. Beware that this is a highly time-consuming operation, " | |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3490 "as all the DICOM instances will be parsed again, and as all the Orthanc index will be regenerated. " |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3491 "If you have a large database to process, it is advised to use the Housekeeper plugin to perform " |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3492 "this action resource by resource"); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3493 DocumentReconstructFilesField(call); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3494 |
| 4420 | 3495 return; |
| 3496 } | |
| 3497 | |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3498 ServerContext& context = OrthancRestApi::GetContext(call); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3499 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3500 std::list<std::string> studies; |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3501 context.GetIndex().GetAllUuids(studies, ResourceType_Study); |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3502 bool reconstructFiles = GetReconstructFilesField(call); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3503 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3504 for (std::list<std::string>::const_iterator |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3505 study = studies.begin(); study != studies.end(); ++study) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3506 { |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3507 ServerToolbox::ReconstructResource(context, *study, reconstructFiles); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3508 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3509 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3510 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3511 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3512 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3513 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3514 static void GetBulkChildren(std::set<std::string>& target, |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3515 ServerIndex& index, |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3516 const std::set<std::string>& source) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3517 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3518 target.clear(); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3519 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3520 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3521 it = source.begin(); it != source.end(); ++it) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3522 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3523 std::list<std::string> children; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3524 index.GetChildren(children, *it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3525 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3526 for (std::list<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3527 child = children.begin(); child != children.end(); ++child) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3528 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3529 target.insert(*child); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3530 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3531 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3532 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3533 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3534 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3535 static void AddMetadata(Json::Value& target, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3536 ServerIndex& index, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3537 const std::string& resource, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3538 ResourceType level) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3539 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3540 target = Json::objectValue; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3541 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3542 std::map<MetadataType, std::string> content; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3543 index.GetAllMetadata(content, resource, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3544 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3545 for (std::map<MetadataType, std::string>::const_iterator |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3546 it = content.begin(); it != content.end(); ++it) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3547 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3548 target[EnumerationToString(it->first)] = it->second; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3549 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3550 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3551 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3552 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3553 static void BulkContent(RestApiPostCall& call) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3554 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3555 static const char* const LEVEL = "Level"; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3556 static const char* const METADATA = "Metadata"; |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3557 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3558 if (call.IsDocumentation()) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3559 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3560 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3561 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3562 call.GetDocumentation() |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3563 .SetTag("System") |
| 4879 | 3564 .SetSummary("Describe a set of resources") |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3565 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3566 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true) |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3567 .SetRequestField(LEVEL, RestApiCallDocumentation::Type_String, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3568 "This optional argument specifies the level of interest (can be `Patient`, `Study`, `Series` or " |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3569 "`Instance`). Orthanc will loop over the items inside `Resources`, and explore upward or " |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3570 "downward in the DICOM hierarchy in order to find the level of interest.", false) |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3571 .SetRequestField(METADATA, RestApiCallDocumentation::Type_Boolean, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3572 "If set to `true` (default value), the metadata associated with the resources will also be retrieved.", false) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3573 .SetDescription("Get the content all the DICOM patients, studies, series or instances " |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3574 "whose identifiers are provided in the `Resources` field, in one single call."); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3575 return; |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3576 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3577 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3578 Json::Value request; |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3579 if (!call.ParseJsonRequest(request) || |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3580 request.type() != Json::objectValue) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3581 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3582 throw OrthancException(ErrorCode_BadRequest, |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3583 "The body must contain a JSON object"); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3584 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3585 else |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3586 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3587 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(request, DicomToJsonFormat_Human); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3588 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3589 bool metadata = true; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3590 if (request.isMember(METADATA)) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3591 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3592 metadata = SerializationToolbox::ReadBoolean(request, METADATA); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3593 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3594 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3595 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3596 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3597 Json::Value answer = Json::arrayValue; |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3598 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3599 if (request.isMember(LEVEL)) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3600 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3601 // Complex case: Need to explore the DICOM hierarchy |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3602 ResourceType level = StringToResourceType(SerializationToolbox::ReadString(request, LEVEL).c_str()); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3603 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3604 std::set<std::string> resources; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3605 SerializationToolbox::ReadSetOfStrings(resources, request, "Resources"); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3606 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3607 std::set<std::string> interest; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3608 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3609 assert(ResourceType_Patient < ResourceType_Study && |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3610 ResourceType_Study < ResourceType_Series && |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3611 ResourceType_Series < ResourceType_Instance); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3612 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3613 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3614 it = resources.begin(); it != resources.end(); ++it) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3615 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3616 ResourceType type; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3617 if (index.LookupResourceType(type, *it)) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3618 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3619 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3620 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3621 // This resource is already from the level of interest |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3622 interest.insert(*it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3623 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3624 else if (type < level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3625 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3626 // Need to explore children |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3627 std::set<std::string> current; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3628 current.insert(*it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3629 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3630 for (;;) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3631 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3632 std::set<std::string> children; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3633 GetBulkChildren(children, index, current); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3634 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3635 type = GetChildResourceType(type); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3636 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3637 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3638 for (std::set<std::string>::const_iterator |
| 4716 | 3639 it2 = children.begin(); it2 != children.end(); ++it2) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3640 { |
| 4716 | 3641 interest.insert(*it2); |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3642 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3643 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3644 break; // done |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3645 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3646 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3647 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3648 current.swap(children); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3649 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3650 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3651 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3652 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3653 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3654 // Need to explore parents |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3655 std::string current = *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3656 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3657 for (;;) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3658 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3659 std::string parent; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3660 if (index.LookupParent(parent, current)) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3661 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3662 type = GetParentResourceType(type); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3663 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3664 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3665 interest.insert(parent); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3666 break; // done |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3667 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3668 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3669 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3670 current = parent; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3671 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3672 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3673 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3674 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3675 break; // The resource has been deleted during the exploration |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3676 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3677 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3678 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3679 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3680 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3681 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3682 CLOG(INFO, HTTP) << "Unknown resource during a bulk content retrieval: " << *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3683 } |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3684 } |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3685 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3686 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3687 it = interest.begin(); it != interest.end(); ++it) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3688 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3689 Json::Value item; |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3690 std::set<DicomTag> emptyRequestedTags; // not supported for bulk content |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3691 |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3692 if (OrthancRestApi::GetContext(call).ExpandResource(item, *it, level, format, emptyRequestedTags, true /* allowStorageAccess */)) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3693 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3694 if (metadata) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3695 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3696 AddMetadata(item[METADATA], index, *it, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3697 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3698 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3699 answer.append(item); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3700 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3701 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3702 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3703 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3704 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3705 // Simple case: We return the queried resources as such |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3706 std::list<std::string> resources; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3707 SerializationToolbox::ReadListOfStrings(resources, request, "Resources"); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3708 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3709 for (std::list<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3710 it = resources.begin(); it != resources.end(); ++it) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3711 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3712 ResourceType level; |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3713 Json::Value item; |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3714 std::set<DicomTag> emptyRequestedTags; // not supported for bulk content |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3715 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3716 if (index.LookupResourceType(level, *it) && |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3717 OrthancRestApi::GetContext(call).ExpandResource(item, *it, level, format, emptyRequestedTags, true /* allowStorageAccess */)) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3718 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3719 if (metadata) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3720 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3721 AddMetadata(item[METADATA], index, *it, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3722 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3723 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3724 answer.append(item); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3725 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3726 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3727 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3728 CLOG(INFO, HTTP) << "Unknown resource during a bulk content retrieval: " << *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3729 } |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3730 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3731 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3732 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3733 call.GetOutput().AnswerJson(answer); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3734 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3735 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3736 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3737 |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3738 static void BulkDelete(RestApiPostCall& call) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3739 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3740 if (call.IsDocumentation()) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3741 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3742 call.GetDocumentation() |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3743 .SetTag("System") |
| 4879 | 3744 .SetSummary("Delete a set of resources") |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3745 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3746 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3747 .SetDescription("Delete all the DICOM patients, studies, series or instances " |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3748 "whose identifiers are provided in the `Resources` field."); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3749 return; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3750 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3751 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3752 ServerContext& context = OrthancRestApi::GetContext(call); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3753 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3754 Json::Value request; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3755 if (!call.ParseJsonRequest(request) || |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3756 request.type() != Json::objectValue) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3757 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3758 throw OrthancException(ErrorCode_BadRequest, |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3759 "The body must contain a JSON object"); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3760 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3761 else |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3762 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3763 std::set<std::string> resources; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3764 SerializationToolbox::ReadSetOfStrings(resources, request, "Resources"); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3765 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3766 for (std::set<std::string>::const_iterator |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3767 it = resources.begin(); it != resources.end(); ++it) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3768 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3769 ResourceType type; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3770 Json::Value remainingAncestor; // Unused |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3771 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3772 if (!context.GetIndex().LookupResourceType(type, *it) || |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3773 !context.DeleteResource(remainingAncestor, *it, type)) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3774 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3775 CLOG(INFO, HTTP) << "Unknown resource during a bulk deletion: " << *it; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3776 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3777 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3778 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3779 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3780 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3781 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3782 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3783 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3784 void OrthancRestApi::RegisterResources() |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3785 { |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3786 Register("/instances", ListResources<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3787 Register("/patients", ListResources<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3788 Register("/series", ListResources<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3789 Register("/studies", ListResources<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3790 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3791 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3792 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3793 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3794 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3795 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3796 Register("/series/{id}", GetSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3797 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3798 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3799 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3800 Register("/instances/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3801 Register("/patients/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3802 Register("/studies/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3803 Register("/series/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3804 |
|
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3805 Register("/patients/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3806 Register("/series/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3807 Register("/studies/{id}/shared-tags", GetSharedTags); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
3808 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3809 Register("/instances/{id}/module", GetModule<ResourceType_Instance, DicomModule_Instance>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3810 Register("/patients/{id}/module", GetModule<ResourceType_Patient, DicomModule_Patient>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3811 Register("/series/{id}/module", GetModule<ResourceType_Series, DicomModule_Series>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3812 Register("/studies/{id}/module", GetModule<ResourceType_Study, DicomModule_Study>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3813 Register("/studies/{id}/module-patient", GetModule<ResourceType_Study, DicomModule_Patient>); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
3814 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3815 Register("/instances/{id}/file", GetInstanceFile); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3816 Register("/instances/{id}/export", ExportInstanceFile); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3817 Register("/instances/{id}/tags", GetInstanceTags); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3818 Register("/instances/{id}/simplified-tags", GetInstanceSimplifiedTags); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3819 Register("/instances/{id}/frames", ListFrames); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3820 |
|
4424
83371ccdfe80
openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4422
diff
changeset
|
3821 Register("/instances/{id}/frames/{frame}", RestApi::AutoListChildren); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3822 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
3823 Register("/instances/{id}/frames/{frame}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3824 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3825 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3826 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
3827 Register("/instances/{id}/frames/{frame}/matlab", GetMatlabImage); |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
3828 Register("/instances/{id}/frames/{frame}/raw", GetRawFrame<false>); |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
3829 Register("/instances/{id}/frames/{frame}/raw.gz", GetRawFrame<true>); |
|
4902
df86d2505df8
Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
3830 Register("/instances/{id}/frames/{frame}/numpy", GetNumpyFrame); // New in Orthanc 1.10.0 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3831 Register("/instances/{id}/pdf", ExtractPdf); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3832 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
3833 Register("/instances/{id}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3834 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3835 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3836 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
3837 Register("/instances/{id}/matlab", GetMatlabImage); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3838 Register("/instances/{id}/header", GetInstanceHeader); |
|
4902
df86d2505df8
Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
3839 Register("/instances/{id}/numpy", GetNumpyInstance); // New in Orthanc 1.10.0 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3840 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3841 Register("/patients/{id}/protected", IsProtectedPatient); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3842 Register("/patients/{id}/protected", SetPatientProtection); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3843 |
| 4409 | 3844 std::vector<std::string> resourceTypes; |
| 3845 resourceTypes.push_back("patients"); | |
| 3846 resourceTypes.push_back("studies"); | |
| 3847 resourceTypes.push_back("series"); | |
| 3848 resourceTypes.push_back("instances"); | |
| 3849 | |
| 3850 for (size_t i = 0; i < resourceTypes.size(); i++) | |
| 3851 { | |
| 3852 Register("/" + resourceTypes[i] + "/{id}/metadata", ListMetadata); | |
| 3853 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", DeleteMetadata); | |
| 3854 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", GetMetadata); | |
| 3855 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", SetMetadata); | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3856 |
| 4409 | 3857 Register("/" + resourceTypes[i] + "/{id}/attachments", ListAttachments); |
| 3858 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", DeleteAttachment); | |
| 3859 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", GetAttachmentOperations); | |
| 3860 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", UploadAttachment); | |
| 3861 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compress", ChangeAttachmentCompression<CompressionType_ZlibWithSize>); | |
| 3862 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-data", GetAttachmentData<0>); | |
| 3863 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-md5", GetAttachmentCompressedMD5); | |
| 3864 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-size", GetAttachmentCompressedSize); | |
| 3865 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/data", GetAttachmentData<1>); | |
| 3866 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/is-compressed", IsAttachmentCompressed); | |
| 3867 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/md5", GetAttachmentMD5); | |
| 3868 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/size", GetAttachmentSize); | |
| 3869 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/uncompress", ChangeAttachmentCompression<CompressionType_None>); | |
|
4883
504624b0a062
Added "/patients|studies|series|instances/{...}/attachments/{...}/info" route to retrieve the full information about an attachment (size, type, MD5 and UUID)
Alain Mazy <am@osimis.io>
parents:
4880
diff
changeset
|
3870 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/info", GetAttachmentInfo); |
| 4409 | 3871 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/verify-md5", VerifyAttachment); |
| 3872 } | |
| 782 | 3873 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3874 Register("/tools/invalidate-tags", InvalidateTags); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3875 Register("/tools/lookup", Lookup); |
| 1354 | 3876 Register("/tools/find", Find); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3877 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3878 Register("/patients/{id}/studies", GetChildResources<ResourceType_Patient, ResourceType_Study>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3879 Register("/patients/{id}/series", GetChildResources<ResourceType_Patient, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3880 Register("/patients/{id}/instances", GetChildResources<ResourceType_Patient, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3881 Register("/studies/{id}/series", GetChildResources<ResourceType_Study, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3882 Register("/studies/{id}/instances", GetChildResources<ResourceType_Study, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3883 Register("/series/{id}/instances", GetChildResources<ResourceType_Series, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3884 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3885 Register("/studies/{id}/patient", GetParentResource<ResourceType_Study, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3886 Register("/series/{id}/patient", GetParentResource<ResourceType_Series, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3887 Register("/series/{id}/study", GetParentResource<ResourceType_Series, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3888 Register("/instances/{id}/patient", GetParentResource<ResourceType_Instance, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3889 Register("/instances/{id}/study", GetParentResource<ResourceType_Instance, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3890 Register("/instances/{id}/series", GetParentResource<ResourceType_Instance, ResourceType_Series>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3891 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3892 Register("/patients/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3893 Register("/studies/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3894 Register("/series/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3895 |
| 782 | 3896 Register("/instances/{id}/content/*", GetRawContent); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3897 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3898 Register("/series/{id}/ordered-slices", OrderSlices); |
|
4902
df86d2505df8
Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
3899 Register("/series/{id}/numpy", GetNumpySeries); // New in Orthanc 1.10.0 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3900 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3901 Register("/patients/{id}/reconstruct", ReconstructResource<ResourceType_Patient>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3902 Register("/studies/{id}/reconstruct", ReconstructResource<ResourceType_Study>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3903 Register("/series/{id}/reconstruct", ReconstructResource<ResourceType_Series>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3904 Register("/instances/{id}/reconstruct", ReconstructResource<ResourceType_Instance>); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3905 Register("/tools/reconstruct", ReconstructAllResources); |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3906 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3907 Register("/tools/bulk-content", BulkContent); |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3908 Register("/tools/bulk-delete", BulkDelete); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3909 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3910 } |