Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancRestApi/OrthancRestResources.cpp @ 4879:c728d8f25e5a
fix doc
| author | Alain Mazy <am@osimis.io> |
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| date | Wed, 19 Jan 2022 17:05:24 +0100 |
| parents | 8b51d65584f0 |
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| rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2021 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * In addition, as a special exception, the copyright holders of this |
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14 * program give permission to link the code of its release with the |
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15 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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16 * that use the same license as the "OpenSSL" library), and distribute |
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17 * the linked executables. You must obey the GNU General Public License |
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18 * in all respects for all of the code used other than "OpenSSL". If you |
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19 * modify file(s) with this exception, you may extend this exception to |
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20 * your version of the file(s), but you are not obligated to do so. If |
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21 * you do not wish to do so, delete this exception statement from your |
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22 * version. If you delete this exception statement from all source files |
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23 * in the program, then also delete it here. |
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24 * |
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25 * This program is distributed in the hope that it will be useful, but |
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26 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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27 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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28 * General Public License for more details. |
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29 * |
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30 * You should have received a copy of the GNU General Public License |
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31 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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32 **/ |
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33 |
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34 |
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35 #include "../PrecompiledHeadersServer.h" |
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36 #include "OrthancRestApi.h" |
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37 |
| 4045 | 38 #include "../../../OrthancFramework/Sources/Compression/GzipCompressor.h" |
| 39 #include "../../../OrthancFramework/Sources/DicomFormat/DicomImageInformation.h" | |
| 40 #include "../../../OrthancFramework/Sources/DicomParsing/DicomWebJsonVisitor.h" | |
| 41 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 42 #include "../../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" | |
| 43 #include "../../../OrthancFramework/Sources/HttpServer/HttpContentNegociation.h" | |
| 44 #include "../../../OrthancFramework/Sources/Images/Image.h" | |
| 45 #include "../../../OrthancFramework/Sources/Images/ImageProcessing.h" | |
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46 #include "../../../OrthancFramework/Sources/Images/NumpyWriter.h" |
| 4045 | 47 #include "../../../OrthancFramework/Sources/Logging.h" |
| 48 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h" | |
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49 #include "../../../OrthancFramework/Sources/SerializationToolbox.h" |
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51 #include "../OrthancConfiguration.h" |
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52 #include "../Search/DatabaseLookup.h" |
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53 #include "../ServerContext.h" |
| 2131 | 54 #include "../ServerToolbox.h" |
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55 #include "../SliceOrdering.h" |
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56 |
| 3687 | 57 // This "include" is mandatory for Release builds using Linux Standard Base |
| 58 #include <boost/math/special_functions/round.hpp> | |
| 59 | |
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60 |
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61 /** |
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62 * This semaphore is used to limit the number of concurrent HTTP |
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63 * requests on CPU-intensive routes of the REST API, in order to |
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64 * prevent exhaustion of resources (new in Orthanc 1.7.0). |
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65 **/ |
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66 static Orthanc::Semaphore throttlingSemaphore_(4); // TODO => PARAMETER? |
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67 |
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68 |
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69 static const std::string CHECK_REVISIONS = "CheckRevisions"; |
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70 |
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71 static const char* const IGNORE_LENGTH = "ignore-length"; |
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72 |
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73 |
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74 namespace Orthanc |
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75 { |
| 4415 | 76 static std::string GetDocumentationSampleResource(ResourceType type) |
| 77 { | |
| 78 switch (type) | |
| 79 { | |
| 80 case Orthanc::ResourceType_Instance: | |
| 81 return "https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2"; | |
| 82 break; | |
| 83 | |
| 84 case Orthanc::ResourceType_Series: | |
| 85 return "https://demo.orthanc-server.com/series/37836232-d13a2350-fa1dedc5-962b31aa-010f8e52"; | |
| 86 break; | |
| 87 | |
| 88 case Orthanc::ResourceType_Study: | |
| 89 return "https://demo.orthanc-server.com/studies/27f7126f-4f66fb14-03f4081b-f9341db2-53925988"; | |
| 90 break; | |
| 91 | |
| 92 case Orthanc::ResourceType_Patient: | |
| 93 return "https://demo.orthanc-server.com/patients/46e6332c-677825b6-202fcf7c-f787bc5f-7b07c382"; | |
| 94 break; | |
| 95 | |
| 96 default: | |
| 97 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 98 } | |
| 99 } | |
| 100 | |
| 101 | |
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102 static void AnswerDicomAsJson(RestApiCall& call, |
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103 const Json::Value& dicom, |
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104 DicomToJsonFormat mode) |
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105 { |
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106 if (mode != DicomToJsonFormat_Full) |
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107 { |
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108 Json::Value simplified; |
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109 Toolbox::SimplifyDicomAsJson(simplified, dicom, mode); |
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110 call.GetOutput().AnswerJson(simplified); |
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111 } |
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112 else |
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113 { |
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114 call.GetOutput().AnswerJson(dicom); |
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115 } |
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116 } |
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117 |
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118 |
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119 static void ParseSetOfTags(std::set<DicomTag>& target, |
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120 const RestApiGetCall& call, |
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121 const std::string& argument) |
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122 { |
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123 target.clear(); |
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124 |
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125 if (call.HasArgument(argument)) |
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126 { |
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127 std::vector<std::string> tags; |
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128 Toolbox::TokenizeString(tags, call.GetArgument(argument, ""), ','); |
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129 |
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130 for (size_t i = 0; i < tags.size(); i++) |
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131 { |
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132 target.insert(FromDcmtkBridge::ParseTag(tags[i])); |
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133 } |
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134 } |
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135 } |
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136 |
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137 |
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138 // List all the patients, studies, series or instances ---------------------- |
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139 |
| 1354 | 140 static void AnswerListOfResources(RestApiOutput& output, |
| 141 ServerIndex& index, | |
| 142 const std::list<std::string>& resources, | |
| 143 ResourceType level, | |
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144 bool expand, |
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145 DicomToJsonFormat format) |
| 1354 | 146 { |
| 147 Json::Value answer = Json::arrayValue; | |
| 148 | |
| 149 for (std::list<std::string>::const_iterator | |
| 1384 | 150 resource = resources.begin(); resource != resources.end(); ++resource) |
| 1354 | 151 { |
| 152 if (expand) | |
| 153 { | |
| 4554 | 154 Json::Value expanded; |
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155 if (index.ExpandResource(expanded, *resource, level, format)) |
| 1354 | 156 { |
| 4554 | 157 answer.append(expanded); |
| 1354 | 158 } |
| 159 } | |
| 160 else | |
| 161 { | |
| 162 answer.append(*resource); | |
| 163 } | |
| 164 } | |
| 165 | |
| 166 output.AnswerJson(answer); | |
| 167 } | |
| 168 | |
| 169 | |
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170 template <enum ResourceType resourceType> |
| 974 | 171 static void ListResources(RestApiGetCall& call) |
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172 { |
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173 if (call.IsDocumentation()) |
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174 { |
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175 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
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176 |
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177 const std::string resources = GetResourceTypeText(resourceType, true /* plural */, false /* lower case */); |
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178 call.GetDocumentation() |
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179 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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180 .SetSummary("List the available " + resources) |
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181 .SetDescription("List the Orthanc identifiers of all the available DICOM " + resources) |
| 4403 | 182 .SetHttpGetArgument("limit", RestApiCallDocumentation::Type_Number, "Limit the number of results", false) |
| 183 .SetHttpGetArgument("since", RestApiCallDocumentation::Type_Number, "Show only the resources since the provided index", false) | |
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184 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, |
| 4403 | 185 "If present, retrieve detailed information about the individual " + resources, false) |
| 4404 | 186 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " |
| 187 "about the reported " + resources + " (if `expand` argument is provided)") | |
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188 .SetHttpGetSample("https://demo.orthanc-server.com/" + resources + "?since=0&limit=2", true); |
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189 return; |
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190 } |
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191 |
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192 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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193 |
| 1354 | 194 std::list<std::string> result; |
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195 |
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196 if (call.HasArgument("limit") || |
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197 call.HasArgument("since")) |
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198 { |
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199 if (!call.HasArgument("limit")) |
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200 { |
| 2955 | 201 throw OrthancException(ErrorCode_BadRequest, |
| 202 "Missing \"limit\" argument for GET request against: " + | |
| 203 call.FlattenUri()); | |
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204 } |
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205 |
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206 if (!call.HasArgument("since")) |
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207 { |
| 2955 | 208 throw OrthancException(ErrorCode_BadRequest, |
| 209 "Missing \"since\" argument for GET request against: " + | |
| 210 call.FlattenUri()); | |
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211 } |
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212 |
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213 size_t since = boost::lexical_cast<size_t>(call.GetArgument("since", "")); |
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214 size_t limit = boost::lexical_cast<size_t>(call.GetArgument("limit", "")); |
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215 index.GetAllUuids(result, resourceType, since, limit); |
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216 } |
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217 else |
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218 { |
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219 index.GetAllUuids(result, resourceType); |
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220 } |
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221 |
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222 AnswerListOfResources(call.GetOutput(), index, result, resourceType, call.HasArgument("expand"), |
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223 OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human)); |
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224 } |
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225 |
| 4409 | 226 |
| 227 | |
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228 template <enum ResourceType resourceType> |
| 974 | 229 static void GetSingleResource(RestApiGetCall& call) |
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230 { |
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231 if (call.IsDocumentation()) |
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232 { |
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233 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
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234 |
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235 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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236 call.GetDocumentation() |
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237 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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238 .SetSummary("Get information about some " + resource) |
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239 .SetDescription("Get detailed information about the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 240 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 4409 | 241 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
| 242 .SetHttpGetSample(GetDocumentationSampleResource(resourceType), true); | |
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243 return; |
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244 } |
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245 |
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246 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
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247 |
| 4554 | 248 Json::Value json; |
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249 if (OrthancRestApi::GetIndex(call).ExpandResource( |
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250 json, call.GetUriComponent("id", ""), resourceType, format)) |
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251 { |
| 4554 | 252 call.GetOutput().AnswerJson(json); |
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253 } |
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254 } |
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255 |
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256 template <enum ResourceType resourceType> |
| 974 | 257 static void DeleteSingleResource(RestApiDeleteCall& call) |
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258 { |
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259 if (call.IsDocumentation()) |
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260 { |
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261 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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262 call.GetDocumentation() |
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263 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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264 .SetSummary("Delete some " + resource) |
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265 .SetDescription("Delete the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 266 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); |
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267 return; |
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268 } |
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269 |
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270 Json::Value remainingAncestor; |
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271 if (OrthancRestApi::GetContext(call).DeleteResource(remainingAncestor, call.GetUriComponent("id", ""), resourceType)) |
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272 { |
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273 call.GetOutput().AnswerJson(remainingAncestor); |
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274 } |
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275 } |
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276 |
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277 |
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278 // Get information about a single patient ----------------------------------- |
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279 |
| 974 | 280 static void IsProtectedPatient(RestApiGetCall& call) |
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281 { |
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282 if (call.IsDocumentation()) |
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283 { |
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284 call.GetDocumentation() |
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285 .SetTag("Patients") |
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286 .SetSummary("Is the patient protected against recycling?") |
| 4404 | 287 .SetUriArgument("id", "Orthanc identifier of the patient of interest") |
| 4403 | 288 .AddAnswerType(MimeType_PlainText, "`1` if protected, `0` if not protected"); |
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289 return; |
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290 } |
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291 |
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292 std::string publicId = call.GetUriComponent("id", ""); |
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293 bool isProtected = OrthancRestApi::GetIndex(call).IsProtectedPatient(publicId); |
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294 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", MimeType_PlainText); |
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295 } |
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296 |
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297 |
| 974 | 298 static void SetPatientProtection(RestApiPutCall& call) |
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299 { |
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300 if (call.IsDocumentation()) |
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301 { |
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302 call.GetDocumentation() |
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303 .SetTag("Patients") |
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304 .SetSummary("Protect one patient against recycling") |
| 4403 | 305 .SetDescription("Check out configuration options `MaximumStorageSize` and `MaximumPatientCount`") |
| 4404 | 306 .SetUriArgument("id", "Orthanc identifier of the patient of interest"); |
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307 return; |
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308 } |
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309 |
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310 ServerContext& context = OrthancRestApi::GetContext(call); |
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311 |
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312 std::string publicId = call.GetUriComponent("id", ""); |
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313 |
|
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314 context.GetIndex().SetProtectedPatient(publicId, call.ParseBooleanBody()); |
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315 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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316 } |
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317 |
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318 |
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319 // Get information about a single instance ---------------------------------- |
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320 |
| 974 | 321 static void GetInstanceFile(RestApiGetCall& call) |
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322 { |
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323 if (call.IsDocumentation()) |
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324 { |
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325 call.GetDocumentation() |
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326 .SetTag("Instances") |
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327 .SetSummary("Download DICOM") |
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328 .SetDescription("Download one DICOM instance") |
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329 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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330 .SetHttpHeader("Accept", "This HTTP header can be set to retrieve the DICOM instance in DICOMweb format") |
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331 .AddAnswerType(MimeType_Dicom, "The DICOM instance") |
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332 .AddAnswerType(MimeType_DicomWebJson, "The DICOM instance, in DICOMweb JSON format") |
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333 .AddAnswerType(MimeType_DicomWebXml, "The DICOM instance, in DICOMweb XML format"); |
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334 return; |
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335 } |
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336 |
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337 ServerContext& context = OrthancRestApi::GetContext(call); |
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338 |
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339 std::string publicId = call.GetUriComponent("id", ""); |
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340 |
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341 HttpToolbox::Arguments::const_iterator accept = call.GetHttpHeaders().find("accept"); |
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342 if (accept != call.GetHttpHeaders().end()) |
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343 { |
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344 // New in Orthanc 1.5.4 |
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345 try |
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346 { |
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347 MimeType mime = StringToMimeType(accept->second.c_str()); |
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348 |
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349 if (mime == MimeType_DicomWebJson || |
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350 mime == MimeType_DicomWebXml) |
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351 { |
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352 DicomWebJsonVisitor visitor; |
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353 |
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354 { |
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355 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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356 locker.GetDicom().Apply(visitor); |
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357 } |
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358 |
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359 if (mime == MimeType_DicomWebJson) |
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360 { |
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361 std::string s = visitor.GetResult().toStyledString(); |
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362 call.GetOutput().AnswerBuffer(s, MimeType_DicomWebJson); |
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363 } |
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364 else |
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365 { |
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366 std::string xml; |
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367 visitor.FormatXml(xml); |
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368 call.GetOutput().AnswerBuffer(xml, MimeType_DicomWebXml); |
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369 } |
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370 |
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371 return; |
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372 } |
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373 } |
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374 catch (OrthancException&) |
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375 { |
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376 } |
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377 } |
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378 |
|
1146
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optimization for access to attachments
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379 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_Dicom); |
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380 } |
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381 |
|
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382 |
| 974 | 383 static void ExportInstanceFile(RestApiPostCall& call) |
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384 { |
| 4421 | 385 if (call.IsDocumentation()) |
| 386 { | |
| 387 call.GetDocumentation() | |
| 388 .SetTag("Instances") | |
| 389 .SetSummary("Write DICOM onto filesystem") | |
| 390 .SetDescription("Write the DICOM file onto the filesystem where Orthanc is running") | |
| 391 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 392 .AddRequestType(MimeType_PlainText, "Target path on the filesystem"); | |
| 393 return; | |
| 394 } | |
| 395 | |
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396 ServerContext& context = OrthancRestApi::GetContext(call); |
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397 |
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398 std::string publicId = call.GetUriComponent("id", ""); |
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399 |
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400 std::string dicom; |
| 2124 | 401 context.ReadDicom(dicom, publicId); |
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402 |
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403 std::string target; |
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404 call.BodyToString(target); |
| 2140 | 405 SystemToolbox::WriteFile(dicom, target); |
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406 |
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407 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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408 } |
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409 |
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410 |
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411 template <DicomToJsonFormat format> |
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412 static void GetInstanceTagsInternal(RestApiGetCall& call) |
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413 { |
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414 ServerContext& context = OrthancRestApi::GetContext(call); |
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415 |
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416 std::string publicId = call.GetUriComponent("id", ""); |
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417 |
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418 std::set<DicomTag> ignoreTagLength; |
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419 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
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420 |
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421 if (format != DicomToJsonFormat_Full || |
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422 !ignoreTagLength.empty()) |
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423 { |
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424 Json::Value full; |
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425 context.ReadDicomAsJson(full, publicId, ignoreTagLength); |
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426 AnswerDicomAsJson(call, full, format); |
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427 } |
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428 else |
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429 { |
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430 // This path allows one to avoid the JSON decoding if no |
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431 // simplification is asked, and if no "ignore-length" argument |
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432 // is present |
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433 Json::Value full; |
| 2127 | 434 context.ReadDicomAsJson(full, publicId); |
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435 call.GetOutput().AnswerJson(full); |
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436 } |
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437 } |
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438 |
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439 |
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440 static void GetInstanceTags(RestApiGetCall& call) |
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441 { |
| 4404 | 442 if (call.IsDocumentation()) |
| 443 { | |
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444 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
| 4404 | 445 call.GetDocumentation() |
| 446 .SetTag("Instances") | |
| 447 .SetSummary("Get DICOM tags") | |
| 448 .SetDescription("Get the DICOM tags in the specified format. By default, the `full` format is used, which " | |
| 449 "combines hexadecimal tags with human-readable description.") | |
| 450 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
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451 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
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452 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
| 4404 | 453 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
| 4415 | 454 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/tags", 10); |
| 4404 | 455 return; |
| 456 } | |
| 457 | |
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458 switch (OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)) |
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459 { |
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460 case DicomToJsonFormat_Human: |
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461 GetInstanceTagsInternal<DicomToJsonFormat_Human>(call); |
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462 break; |
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463 |
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464 case DicomToJsonFormat_Short: |
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465 GetInstanceTagsInternal<DicomToJsonFormat_Short>(call); |
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466 break; |
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467 |
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468 case DicomToJsonFormat_Full: |
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469 GetInstanceTagsInternal<DicomToJsonFormat_Full>(call); |
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470 break; |
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471 |
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472 default: |
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473 throw OrthancException(ErrorCode_InternalError); |
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474 } |
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475 } |
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476 |
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477 |
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478 static void GetInstanceSimplifiedTags(RestApiGetCall& call) |
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479 { |
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480 if (call.IsDocumentation()) |
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481 { |
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482 call.GetDocumentation() |
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483 .SetTag("Instances") |
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484 .SetSummary("Get human-readable tags") |
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485 .SetDescription("Get the DICOM tags in human-readable format (same as the `/instances/{id}/tags?simplify` route)") |
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486 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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487 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
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488 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
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489 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
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490 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/simplified-tags", 10); |
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491 return; |
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492 } |
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493 else |
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494 { |
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495 GetInstanceTagsInternal<DicomToJsonFormat_Human>(call); |
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496 } |
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497 } |
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498 |
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499 |
| 974 | 500 static void ListFrames(RestApiGetCall& call) |
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501 { |
| 4414 | 502 if (call.IsDocumentation()) |
| 503 { | |
| 504 call.GetDocumentation() | |
| 505 .SetTag("Instances") | |
| 506 .SetSummary("List available frames") | |
| 507 .SetDescription("List the frames that are available in the DICOM instance of interest") | |
| 508 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 509 .AddAnswerType(MimeType_Json, "The list of the indices of the available frames") | |
| 510 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/frames", true); | |
| 511 return; | |
| 512 } | |
| 513 | |
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514 std::string publicId = call.GetUriComponent("id", ""); |
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515 |
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516 unsigned int numberOfFrames; |
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517 |
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518 { |
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519 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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520 numberOfFrames = locker.GetDicom().GetFramesCount(); |
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521 } |
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522 |
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523 Json::Value result = Json::arrayValue; |
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524 for (unsigned int i = 0; i < numberOfFrames; i++) |
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525 { |
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526 result.append(i); |
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527 } |
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528 |
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529 call.GetOutput().AnswerJson(result); |
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530 } |
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531 |
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532 |
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533 namespace |
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534 { |
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535 class ImageToEncode |
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536 { |
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537 private: |
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538 std::unique_ptr<ImageAccessor>& image_; |
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539 ImageExtractionMode mode_; |
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540 bool invert_; |
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541 MimeType format_; |
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542 std::string answer_; |
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543 |
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544 public: |
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545 ImageToEncode(std::unique_ptr<ImageAccessor>& image, |
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546 ImageExtractionMode mode, |
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547 bool invert) : |
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548 image_(image), |
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549 mode_(mode), |
| 4205 | 550 invert_(invert), |
| 551 format_(MimeType_Binary) | |
|
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552 { |
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553 } |
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554 |
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555 void Answer(RestApiOutput& output) |
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556 { |
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557 output.AnswerBuffer(answer_, format_); |
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558 } |
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559 |
|
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560 void EncodeUsingPng() |
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561 { |
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562 format_ = MimeType_Png; |
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563 DicomImageDecoder::ExtractPngImage(answer_, image_, mode_, invert_); |
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564 } |
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565 |
|
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566 void EncodeUsingPam() |
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567 { |
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568 format_ = MimeType_Pam; |
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569 DicomImageDecoder::ExtractPamImage(answer_, image_, mode_, invert_); |
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570 } |
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571 |
|
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572 void EncodeUsingJpeg(uint8_t quality) |
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573 { |
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574 format_ = MimeType_Jpeg; |
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575 DicomImageDecoder::ExtractJpegImage(answer_, image_, mode_, invert_, quality); |
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576 } |
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577 }; |
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578 |
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579 class EncodePng : public HttpContentNegociation::IHandler |
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580 { |
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581 private: |
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582 ImageToEncode& image_; |
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583 |
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584 public: |
| 4205 | 585 explicit EncodePng(ImageToEncode& image) : image_(image) |
|
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586 { |
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587 } |
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588 |
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589 virtual void Handle(const std::string& type, |
| 4205 | 590 const std::string& subtype) ORTHANC_OVERRIDE |
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591 { |
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592 assert(type == "image"); |
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593 assert(subtype == "png"); |
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594 image_.EncodeUsingPng(); |
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595 } |
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596 }; |
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597 |
|
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598 class EncodePam : public HttpContentNegociation::IHandler |
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599 { |
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600 private: |
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601 ImageToEncode& image_; |
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602 |
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603 public: |
| 4205 | 604 explicit EncodePam(ImageToEncode& image) : image_(image) |
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605 { |
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606 } |
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|
607 |
|
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|
608 virtual void Handle(const std::string& type, |
| 4205 | 609 const std::string& subtype) ORTHANC_OVERRIDE |
|
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610 { |
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|
611 assert(type == "image"); |
| 2780 | 612 assert(subtype == "x-portable-arbitrarymap"); |
|
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613 image_.EncodeUsingPam(); |
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614 } |
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615 }; |
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|
616 |
|
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|
617 class EncodeJpeg : public HttpContentNegociation::IHandler |
|
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618 { |
|
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619 private: |
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620 ImageToEncode& image_; |
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621 unsigned int quality_; |
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622 |
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623 public: |
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624 EncodeJpeg(ImageToEncode& image, |
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625 const RestApiGetCall& call) : |
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626 image_(image) |
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627 { |
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628 std::string v = call.GetArgument("quality", "90" /* default JPEG quality */); |
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629 bool ok = false; |
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630 |
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631 try |
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632 { |
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633 quality_ = boost::lexical_cast<unsigned int>(v); |
| 1847 | 634 ok = (quality_ >= 1 && quality_ <= 100); |
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635 } |
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636 catch (boost::bad_lexical_cast&) |
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637 { |
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638 } |
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639 |
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640 if (!ok) |
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641 { |
| 2955 | 642 throw OrthancException( |
| 643 ErrorCode_BadRequest, | |
| 644 "Bad quality for a JPEG encoding (must be a number between 0 and 100): " + v); | |
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645 } |
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646 } |
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647 |
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648 virtual void Handle(const std::string& type, |
| 4205 | 649 const std::string& subtype) ORTHANC_OVERRIDE |
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650 { |
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651 assert(type == "image"); |
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652 assert(subtype == "jpeg"); |
|
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653 image_.EncodeUsingJpeg(quality_); |
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654 } |
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655 }; |
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656 } |
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657 |
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658 |
|
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659 namespace |
|
3600
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660 { |
|
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661 class IDecodedFrameHandler : public boost::noncopyable |
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662 { |
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663 public: |
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664 virtual ~IDecodedFrameHandler() |
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665 { |
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666 } |
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667 |
|
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668 // "dicom" is non-NULL iff. "RequiresDicomTags() == true" |
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669 virtual void Handle(RestApiGetCall& call, |
|
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670 std::unique_ptr<ImageAccessor>& decoded, |
|
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671 const ParsedDicomFile* dicom, |
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672 unsigned int frame) = 0; |
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673 |
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674 virtual bool RequiresDicomTags() const = 0; |
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675 |
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676 static void Apply(RestApiGetCall& call, |
|
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677 IDecodedFrameHandler& handler, |
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678 ImageExtractionMode mode /* for generation of documentation */, |
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679 bool isRendered /* for generation of documentation */) |
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680 { |
|
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681 if (call.IsDocumentation()) |
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682 { |
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683 std::string m; |
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684 if (!isRendered) |
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685 { |
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686 switch (mode) |
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687 { |
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688 case ImageExtractionMode_Preview: |
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689 m = "preview"; |
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690 break; |
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691 case ImageExtractionMode_UInt8: |
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692 m = "uint8"; |
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693 break; |
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694 case ImageExtractionMode_UInt16: |
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695 m = "uint16"; |
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696 break; |
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697 case ImageExtractionMode_Int16: |
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698 m = "int16"; |
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699 break; |
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700 default: |
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701 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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702 } |
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703 } |
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704 |
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705 std::string description; |
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706 std::string verb = (isRendered ? "Render" : "Decode"); |
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707 |
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708 if (call.HasUriComponent("frame")) |
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709 { |
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710 description = verb + " one frame of interest from the given DICOM instance."; |
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711 call.GetDocumentation() |
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712 .SetSummary(verb + " a frame" + (m.empty() ? "" : " (" + m + ")")) |
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713 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
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714 } |
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715 else |
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716 { |
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717 description = verb + " the first frame of the given DICOM instance."; |
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718 call.GetDocumentation() |
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719 .SetSummary(verb + " an image" + (m.empty() ? "" : " (" + m + ")")); |
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720 } |
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721 |
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722 if (isRendered) |
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723 { |
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724 description += (" This function takes scaling into account (`RescaleSlope` and `RescaleIntercept` tags), " |
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725 "as well as the default windowing stored in the DICOM file (`WindowCenter` and `WindowWidth`tags), " |
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changeset
|
726 "and can be used to resize the resulting image. Color images are not affected by windowing."); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
727 call.GetDocumentation() |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
728 .SetHttpGetArgument("window-center",RestApiCallDocumentation::Type_Number, "Windowing center", false) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
729 .SetHttpGetArgument("window-width",RestApiCallDocumentation::Type_Number, "Windowing width", false) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
730 .SetHttpGetArgument("width",RestApiCallDocumentation::Type_Number, "Width of the resized image", false) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
731 .SetHttpGetArgument("height",RestApiCallDocumentation::Type_Number, "Height of the resized image", false) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
732 .SetHttpGetArgument("smooth",RestApiCallDocumentation::Type_Boolean, "Whether to smooth image on resize", false); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
733 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
734 else |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
735 { |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
736 switch (mode) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
737 { |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
738 case ImageExtractionMode_Preview: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
739 description += " The full dynamic range of grayscale images is rescaled to the [0,255] range."; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
740 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
741 case ImageExtractionMode_UInt8: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
742 description += " Pixels of grayscale images are truncated to the [0,255] range."; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
743 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
744 case ImageExtractionMode_UInt16: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
745 description += " Pixels of grayscale images are truncated to the [0,65535] range."; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
746 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
747 case ImageExtractionMode_Int16: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
748 description += (" Pixels of grayscale images are truncated to the [-32768,32767] range. " |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
749 "Negative values must be interpreted according to two's complement."); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
750 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
751 default: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
752 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
753 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
754 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
755 |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
756 call.GetDocumentation() |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
757 .SetTag("Instances") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
758 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
759 .SetHttpGetArgument("quality", RestApiCallDocumentation::Type_Number, "Quality for JPEG images (between 1 and 100, defaults to 90)", false) |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
760 .SetHttpGetArgument("returnUnsupportedImage", RestApiCallDocumentation::Type_Boolean, "Returns an unsupported.png placeholder image if unable to provide the image instead of returning a 415 HTTP error (defaults to false)", false) |
|
4406
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
761 .SetHttpHeader("Accept", "Format of the resulting image. Can be `image/png` (default), `image/jpeg` or `image/x-portable-arbitrarymap`") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
762 .AddAnswerType(MimeType_Png, "PNG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
763 .AddAnswerType(MimeType_Jpeg, "JPEG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
764 .AddAnswerType(MimeType_Pam, "PAM image (Portable Arbitrary Map)") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
765 .SetDescription(description); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
766 |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
767 return; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
768 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
769 |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
770 ServerContext& context = OrthancRestApi::GetContext(call); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
771 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
772 std::string frameId = call.GetUriComponent("frame", "0"); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
773 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
774 unsigned int frame; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
775 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
776 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
777 frame = boost::lexical_cast<unsigned int>(frameId); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
778 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
779 catch (boost::bad_lexical_cast&) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
780 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
781 return; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
782 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
783 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
784 std::unique_ptr<ImageAccessor> decoded; |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
785 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
786 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
787 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
788 std::string publicId = call.GetUriComponent("id", ""); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
789 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
790 decoded.reset(context.DecodeDicomFrame(publicId, frame)); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
791 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
792 if (decoded.get() == NULL) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
793 { |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
794 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
795 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
796 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
797 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
798 if (handler.RequiresDicomTags()) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
799 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
800 /** |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
801 * Retrieve a summary of the DICOM tags, which is |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
802 * necessary to deal with MONOCHROME1 photometric |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
803 * interpretation, and with windowing parameters. |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
804 **/ |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
805 ServerContext::DicomCacheLocker locker(context, publicId); |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4769
diff
changeset
|
806 handler.Handle(call, decoded, &locker.GetDicom(), frame); |
|
4769
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4722
diff
changeset
|
807 } |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4722
diff
changeset
|
808 else |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4722
diff
changeset
|
809 { |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4769
diff
changeset
|
810 handler.Handle(call, decoded, NULL, frame); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
811 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
812 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
813 catch (OrthancException& e) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
814 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
815 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange || |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
816 e.GetErrorCode() == ErrorCode_UnknownResource) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
817 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
818 // The frame number is out of the range for this DICOM |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
819 // instance, the resource is not existent |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
820 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
821 else |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
822 { |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
823 if (call.HasArgument("returnUnsupportedImage")) |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
824 { |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
825 std::string root = ""; |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
826 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
827 { |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
828 root += "../"; |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
829 } |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
830 |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
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831 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
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832 } |
|
4804
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833 else |
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834 { |
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835 call.GetOutput().SignalError(HttpStatus_415_UnsupportedMediaType); |
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836 } |
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837 } |
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838 return; |
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839 } |
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840 |
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841 } |
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842 |
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843 |
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844 static void DefaultHandler(RestApiGetCall& call, |
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845 std::unique_ptr<ImageAccessor>& decoded, |
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846 ImageExtractionMode mode, |
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847 bool invert) |
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848 { |
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849 ImageToEncode image(decoded, mode, invert); |
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850 |
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851 HttpContentNegociation negociation; |
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852 EncodePng png(image); |
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853 negociation.Register(MIME_PNG, png); |
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854 |
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855 EncodeJpeg jpeg(image, call); |
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856 negociation.Register(MIME_JPEG, jpeg); |
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857 |
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858 EncodePam pam(image); |
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859 negociation.Register(MIME_PAM, pam); |
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860 |
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861 if (negociation.Apply(call.GetHttpHeaders())) |
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862 { |
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863 image.Answer(call.GetOutput()); |
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864 } |
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865 } |
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866 }; |
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867 |
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868 |
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869 class GetImageHandler : public IDecodedFrameHandler |
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870 { |
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871 private: |
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872 ImageExtractionMode mode_; |
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873 |
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874 public: |
| 4205 | 875 explicit GetImageHandler(ImageExtractionMode mode) : |
|
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876 mode_(mode) |
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877 { |
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878 } |
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879 |
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880 virtual void Handle(RestApiGetCall& call, |
|
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881 std::unique_ptr<ImageAccessor>& decoded, |
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882 const ParsedDicomFile* dicom, |
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883 unsigned int frame) ORTHANC_OVERRIDE |
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884 { |
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885 bool invert = false; |
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886 |
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887 if (mode_ == ImageExtractionMode_Preview) |
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888 { |
|
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889 if (dicom == NULL) |
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890 { |
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891 throw OrthancException(ErrorCode_InternalError); |
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892 } |
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|
893 |
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894 DicomMap tags; |
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895 OrthancConfiguration::DefaultExtractDicomSummary(tags, *dicom); |
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896 |
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897 DicomImageInformation info(tags); |
|
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898 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
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899 } |
|
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900 |
|
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|
901 DefaultHandler(call, decoded, mode_, invert); |
|
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902 } |
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903 |
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904 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
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905 { |
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906 return mode_ == ImageExtractionMode_Preview; |
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907 } |
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908 }; |
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|
909 |
|
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|
910 |
|
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|
911 class RenderedFrameHandler : public IDecodedFrameHandler |
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|
912 { |
|
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|
913 private: |
|
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914 static void GetUserArguments(double& windowWidth /* inout */, |
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915 double& windowCenter /* inout */, |
|
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|
916 unsigned int& argWidth, |
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917 unsigned int& argHeight, |
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918 bool& smooth, |
| 4205 | 919 const RestApiGetCall& call) |
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920 { |
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921 static const char* ARG_WINDOW_CENTER = "window-center"; |
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922 static const char* ARG_WINDOW_WIDTH = "window-width"; |
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923 static const char* ARG_WIDTH = "width"; |
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924 static const char* ARG_HEIGHT = "height"; |
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925 static const char* ARG_SMOOTH = "smooth"; |
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926 |
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927 if (call.HasArgument(ARG_WINDOW_WIDTH) && |
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928 !SerializationToolbox::ParseDouble(windowWidth, call.GetArgument(ARG_WINDOW_WIDTH, ""))) |
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929 { |
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930 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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931 "Bad value for argument: " + std::string(ARG_WINDOW_WIDTH)); |
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932 } |
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933 |
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934 if (call.HasArgument(ARG_WINDOW_CENTER) && |
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|
935 !SerializationToolbox::ParseDouble(windowCenter, call.GetArgument(ARG_WINDOW_CENTER, ""))) |
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936 { |
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937 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4769
diff
changeset
|
938 "Bad value for argument: " + std::string(ARG_WINDOW_CENTER)); |
|
3685
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rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
939 } |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
940 |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
941 argWidth = 0; |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
942 argHeight = 0; |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
943 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
944 if (call.HasArgument(ARG_WIDTH)) |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
945 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
946 try |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
947 { |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
948 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_WIDTH, "")); |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
949 if (tmp < 0) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
950 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
951 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
952 "Argument cannot be negative: " + std::string(ARG_WIDTH)); |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
953 } |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
954 else |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
955 { |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
956 argWidth = static_cast<unsigned int>(tmp); |
|
3685
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rendering of RGB24
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diff
changeset
|
957 } |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
958 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
959 catch (boost::bad_lexical_cast&) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
960 { |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
961 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
962 "Bad value for argument: " + std::string(ARG_WIDTH)); |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
963 } |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
964 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
965 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
966 if (call.HasArgument(ARG_HEIGHT)) |
|
3685
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rendering of RGB24
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parents:
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diff
changeset
|
967 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
968 try |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
969 { |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
970 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_HEIGHT, "")); |
|
3685
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rendering of RGB24
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diff
changeset
|
971 if (tmp < 0) |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
972 { |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
973 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
974 "Argument cannot be negative: " + std::string(ARG_HEIGHT)); |
|
3685
2cc34837d694
rendering of RGB24
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|
975 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
976 else |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
977 { |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
978 argHeight = static_cast<unsigned int>(tmp); |
|
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rendering of RGB24
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diff
changeset
|
979 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
980 } |
|
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rendering of RGB24
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changeset
|
981 catch (boost::bad_lexical_cast&) |
|
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parents:
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changeset
|
982 { |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
983 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
984 "Bad value for argument: " + std::string(ARG_HEIGHT)); |
|
3685
2cc34837d694
rendering of RGB24
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changeset
|
985 } |
|
2cc34837d694
rendering of RGB24
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changeset
|
986 } |
|
2cc34837d694
rendering of RGB24
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changeset
|
987 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
988 smooth = false; |
|
3685
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|
989 |
|
2cc34837d694
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parents:
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diff
changeset
|
990 if (call.HasArgument(ARG_SMOOTH)) |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
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|
991 { |
|
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
992 smooth = RestApiCall::ParseBoolean(call.GetArgument(ARG_SMOOTH, "")); |
|
3685
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rendering of RGB24
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changeset
|
993 } |
|
3690
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diff
changeset
|
994 } |
|
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
995 |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
996 |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
997 public: |
|
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parents:
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changeset
|
998 virtual void Handle(RestApiGetCall& call, |
|
3712
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replacing std::auto_ptr by std::unique_ptr
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|
999 std::unique_ptr<ImageAccessor>& decoded, |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
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|
1000 const ParsedDicomFile* dicom, |
|
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|
1001 unsigned int frame) ORTHANC_OVERRIDE |
|
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changeset
|
1002 { |
|
4769
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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parents:
4722
diff
changeset
|
1003 if (dicom == NULL) |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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4722
diff
changeset
|
1004 { |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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parents:
4722
diff
changeset
|
1005 throw OrthancException(ErrorCode_InternalError); |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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diff
changeset
|
1006 } |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1007 |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
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changeset
|
1008 PhotometricInterpretation photometric; |
|
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Support detection of windowing and rescale in Philips multiframe images
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diff
changeset
|
1009 const bool invert = (dicom->LookupPhotometricInterpretation(photometric) && |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
1010 photometric == PhotometricInterpretation_Monochrome1); |
|
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Support detection of windowing and rescale in Philips multiframe images
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changeset
|
1011 |
|
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Support detection of windowing and rescale in Philips multiframe images
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diff
changeset
|
1012 double rescaleIntercept, rescaleSlope, windowCenter, windowWidth; |
|
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changeset
|
1013 dicom->GetRescale(rescaleIntercept, rescaleSlope, frame); |
|
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Support detection of windowing and rescale in Philips multiframe images
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diff
changeset
|
1014 dicom->GetDefaultWindowing(windowCenter, windowWidth, frame); |
|
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Support detection of windowing and rescale in Philips multiframe images
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changeset
|
1015 |
|
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changeset
|
1016 unsigned int argWidth, argHeight; |
|
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changeset
|
1017 bool smooth; |
|
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|
1018 GetUserArguments(windowWidth, windowCenter, argWidth, argHeight, smooth, call); |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1019 |
|
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|
1020 unsigned int targetWidth = decoded->GetWidth(); |
|
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|
1021 unsigned int targetHeight = decoded->GetHeight(); |
| 3686 | 1022 |
| 1023 if (decoded->GetWidth() != 0 && | |
| 1024 decoded->GetHeight() != 0) | |
| 1025 { | |
| 1026 float ratio = 1; | |
| 1027 | |
|
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changeset
|
1028 if (argWidth != 0 && |
|
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changeset
|
1029 argHeight != 0) |
| 3686 | 1030 { |
|
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|
1031 float ratioX = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
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changeset
|
1032 float ratioY = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
|
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changeset
|
1033 ratio = std::min(ratioX, ratioY); |
| 3686 | 1034 } |
|
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changeset
|
1035 else if (argWidth != 0) |
| 3686 | 1036 { |
|
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|
1037 ratio = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
| 3686 | 1038 } |
|
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changeset
|
1039 else if (argHeight != 0) |
|
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|
1040 { |
|
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changeset
|
1041 ratio = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
|
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changeset
|
1042 } |
|
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changeset
|
1043 |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1044 targetWidth = boost::math::iround(ratio * static_cast<float>(decoded->GetWidth())); |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1045 targetHeight = boost::math::iround(ratio * static_cast<float>(decoded->GetHeight())); |
| 3686 | 1046 } |
| 1047 | |
|
3685
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rendering of RGB24
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changeset
|
1048 if (decoded->GetFormat() == PixelFormat_RGB24) |
|
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rendering of RGB24
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changeset
|
1049 { |
|
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diff
changeset
|
1050 if (targetWidth == decoded->GetWidth() && |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
1051 targetHeight == decoded->GetHeight()) |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1052 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1053 DefaultHandler(call, decoded, ImageExtractionMode_Preview, false); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1054 } |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1055 else |
|
2cc34837d694
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1056 { |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
1057 std::unique_ptr<ImageAccessor> resized( |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
1058 new Image(decoded->GetFormat(), targetWidth, targetHeight, false)); |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1059 |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1060 if (smooth && |
|
3690
a9ce35d67c3c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1061 (targetWidth < decoded->GetWidth() || |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1062 targetHeight < decoded->GetHeight())) |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1063 { |
|
4065
d6362b2c4b61
export dcmdata in shared library, rounding in convolution tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4055
diff
changeset
|
1064 ImageProcessing::SmoothGaussian5x5(*decoded, false /* be fast, don't round */); |
|
3685
2cc34837d694
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parents:
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diff
changeset
|
1065 } |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1066 |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1067 ImageProcessing::Resize(*resized, *decoded); |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1068 DefaultHandler(call, resized, ImageExtractionMode_Preview, false); |
|
3685
2cc34837d694
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1069 } |
|
2cc34837d694
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1070 } |
| 3686 | 1071 else |
| 1072 { | |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1073 // Grayscale image: (1) convert to Float32, (2) apply |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1074 // windowing to get a Grayscale8, (3) possibly resize |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1075 |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
1076 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1077 ImageProcessing::Convert(converted, *decoded); |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1078 |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1079 // Avoid divisions by zero |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1080 if (windowWidth <= 1.0f) |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1081 { |
|
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parents:
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diff
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|
1082 windowWidth = 1; |
|
a9ce35d67c3c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1083 } |
|
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
1084 |
|
4834
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download of numpy arrays from the REST API
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parents:
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diff
changeset
|
1085 if (std::abs(rescaleSlope) <= 0.0001) |
|
3690
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parents:
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diff
changeset
|
1086 { |
|
4834
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download of numpy arrays from the REST API
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parents:
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diff
changeset
|
1087 rescaleSlope = 0.0001; |
|
3690
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parents:
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diff
changeset
|
1088 } |
|
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parents:
3687
diff
changeset
|
1089 |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
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parents:
4769
diff
changeset
|
1090 const double scaling = 255.0 * rescaleSlope / windowWidth; |
|
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
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parents:
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diff
changeset
|
1091 const double offset = (rescaleIntercept - windowCenter + windowWidth / 2.0) / rescaleSlope; |
|
3690
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parents:
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diff
changeset
|
1092 |
|
3712
2a170a8f1faf
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parents:
3690
diff
changeset
|
1093 std::unique_ptr<ImageAccessor> rescaled(new Image(PixelFormat_Grayscale8, decoded->GetWidth(), decoded->GetHeight(), false)); |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1094 ImageProcessing::ShiftScale(*rescaled, converted, static_cast<float>(offset), static_cast<float>(scaling), false); |
|
3690
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parents:
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changeset
|
1095 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
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changeset
|
1096 if (targetWidth == decoded->GetWidth() && |
|
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diff
changeset
|
1097 targetHeight == decoded->GetHeight()) |
|
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parents:
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diff
changeset
|
1098 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1099 DefaultHandler(call, rescaled, ImageExtractionMode_UInt8, invert); |
|
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parents:
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|
1100 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1101 else |
|
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parents:
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diff
changeset
|
1102 { |
|
3712
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replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1103 std::unique_ptr<ImageAccessor> resized( |
|
3690
a9ce35d67c3c
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parents:
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diff
changeset
|
1104 new Image(PixelFormat_Grayscale8, targetWidth, targetHeight, false)); |
|
a9ce35d67c3c
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parents:
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diff
changeset
|
1105 |
|
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diff
changeset
|
1106 if (smooth && |
|
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diff
changeset
|
1107 (targetWidth < decoded->GetWidth() || |
|
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changeset
|
1108 targetHeight < decoded->GetHeight())) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1109 { |
|
4065
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changeset
|
1110 ImageProcessing::SmoothGaussian5x5(*rescaled, false /* be fast, don't round */); |
|
3690
a9ce35d67c3c
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diff
changeset
|
1111 } |
|
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parents:
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diff
changeset
|
1112 |
|
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diff
changeset
|
1113 ImageProcessing::Resize(*resized, *rescaled); |
|
a9ce35d67c3c
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parents:
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diff
changeset
|
1114 DefaultHandler(call, resized, ImageExtractionMode_UInt8, invert); |
|
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diff
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|
1115 } |
| 3686 | 1116 } |
|
3683
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changeset
|
1117 } |
|
12253ddefe5a
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changeset
|
1118 |
|
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diff
changeset
|
1119 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
|
12253ddefe5a
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|
1120 { |
|
12253ddefe5a
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|
1121 return true; |
|
12253ddefe5a
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diff
changeset
|
1122 } |
|
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diff
changeset
|
1123 }; |
|
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
1124 } |
|
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
1125 |
|
3683
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diff
changeset
|
1126 |
|
751
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parents:
diff
changeset
|
1127 template <enum ImageExtractionMode mode> |
| 974 | 1128 static void GetImage(RestApiGetCall& call) |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1129 { |
|
3926
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
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diff
changeset
|
1130 Semaphore::Locker locker(throttlingSemaphore_); |
|
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
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diff
changeset
|
1131 |
|
3683
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changeset
|
1132 GetImageHandler handler(mode); |
|
4406
4cb9f66a1c7c
documenting generation of images
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parents:
4405
diff
changeset
|
1133 IDecodedFrameHandler::Apply(call, handler, mode, false /* not rendered */); |
|
3683
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changeset
|
1134 } |
|
1906
d7c1cb559431
optimization for multi-frame images
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parents:
1902
diff
changeset
|
1135 |
|
1826
ac5b0b4e2434
refactoring of DicomImageDecoder
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parents:
1824
diff
changeset
|
1136 |
|
3683
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changeset
|
1137 static void GetRenderedFrame(RestApiGetCall& call) |
|
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changeset
|
1138 { |
|
3926
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Allow concurrent calls to the custom image decoders provided by the plugins
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diff
changeset
|
1139 Semaphore::Locker locker(throttlingSemaphore_); |
|
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
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diff
changeset
|
1140 |
|
3683
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diff
changeset
|
1141 RenderedFrameHandler handler; |
|
4406
4cb9f66a1c7c
documenting generation of images
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parents:
4405
diff
changeset
|
1142 IDecodedFrameHandler::Apply(call, handler, ImageExtractionMode_Preview /* arbitrary value */, true); |
|
751
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1143 } |
|
5197fd35333c
refactoring of OrthancRestApi
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parents:
diff
changeset
|
1144 |
|
5197fd35333c
refactoring of OrthancRestApi
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parents:
diff
changeset
|
1145 |
|
4834
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|
1146 static void DocumentSharedNumpy(RestApiGetCall& call) |
|
bec432ee1094
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changeset
|
1147 { |
|
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download of numpy arrays from the REST API
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diff
changeset
|
1148 call.GetDocumentation() |
|
bec432ee1094
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diff
changeset
|
1149 .SetUriArgument("id", "Orthanc identifier of the DICOM resource of interest") |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
changeset
|
1150 .SetHttpGetArgument("compress", RestApiCallDocumentation::Type_Boolean, "Compress the file as `.npz`", false) |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
changeset
|
1151 .SetHttpGetArgument("rescale", RestApiCallDocumentation::Type_Boolean, |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
changeset
|
1152 "On grayscale images, apply the rescaling and return floating-point values", false) |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
changeset
|
1153 .AddAnswerType(MimeType_PlainText, "Numpy file: https://numpy.org/devdocs/reference/generated/numpy.lib.format.html"); |
|
bec432ee1094
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diff
changeset
|
1154 } |
|
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|
1155 |
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|
1156 |
|
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1157 namespace |
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1158 { |
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1159 class NumpyVisitor : public boost::noncopyable |
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1160 { |
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1161 private: |
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1162 bool rescale_; |
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1163 unsigned int depth_; |
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1164 unsigned int currentDepth_; |
| 4858 | 1165 unsigned int width_; |
|
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1166 unsigned int height_; |
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1167 PixelFormat format_; |
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1168 ChunkedBuffer buffer_; |
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1169 |
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1170 public: |
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1171 NumpyVisitor(unsigned int depth /* can be zero if 2D frame */, |
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1172 bool rescale) : |
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1173 rescale_(rescale), |
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1174 depth_(depth), |
| 4858 | 1175 currentDepth_(0), |
| 1176 width_(0), // dummy initialization | |
| 1177 height_(0), // dummy initialization | |
| 1178 format_(PixelFormat_Grayscale8) // dummy initialization | |
|
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1179 { |
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1180 } |
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1181 |
| 4858 | 1182 void WriteFrame(const ParsedDicomFile& dicom, |
|
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1183 unsigned int frame) |
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1184 { |
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1185 std::unique_ptr<ImageAccessor> decoded(dicom.DecodeFrame(frame)); |
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1186 |
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1187 if (decoded.get() == NULL) |
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1188 { |
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1189 throw OrthancException(ErrorCode_NotImplemented, "Cannot decode DICOM instance"); |
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1190 } |
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1191 |
|
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1192 if (currentDepth_ == 0) |
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1193 { |
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1194 width_ = decoded->GetWidth(); |
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1195 height_ = decoded->GetHeight(); |
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1196 format_ = decoded->GetFormat(); |
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1197 } |
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1198 else if (width_ != decoded->GetWidth() || |
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1199 height_ != decoded->GetHeight()) |
|
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1200 { |
|
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1201 throw OrthancException(ErrorCode_IncompatibleImageSize, "The size of the frames varies across the instance(s)"); |
|
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1202 } |
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1203 else if (format_ != decoded->GetFormat()) |
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1204 { |
|
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1205 throw OrthancException(ErrorCode_IncompatibleImageFormat, "The pixel format of the frames varies across the instance(s)"); |
|
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1206 } |
|
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1207 |
|
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|
1208 if (rescale_ && |
|
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1209 decoded->GetFormat() != PixelFormat_RGB24) |
|
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1210 { |
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1211 if (currentDepth_ == 0) |
|
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1212 { |
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1213 NumpyWriter::WriteHeader(buffer_, depth_, width_, height_, PixelFormat_Float32); |
|
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1214 } |
|
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1215 |
|
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1216 double rescaleIntercept, rescaleSlope; |
|
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1217 dicom.GetRescale(rescaleIntercept, rescaleSlope, frame); |
|
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1218 |
|
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|
1219 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
|
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1220 ImageProcessing::Convert(converted, *decoded); |
|
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1221 ImageProcessing::ShiftScale2(converted, static_cast<float>(rescaleIntercept), static_cast<float>(rescaleSlope), false); |
|
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1222 |
|
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1223 NumpyWriter::WritePixels(buffer_, converted); |
|
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1224 } |
|
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1225 else |
|
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1226 { |
|
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1227 if (currentDepth_ == 0) |
|
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1228 { |
|
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|
1229 NumpyWriter::WriteHeader(buffer_, depth_, width_, height_, format_); |
|
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1230 } |
|
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|
1231 |
|
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|
1232 NumpyWriter::WritePixels(buffer_, *decoded); |
|
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|
1233 } |
|
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|
1234 |
|
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|
1235 currentDepth_ ++; |
|
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1236 } |
|
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|
1237 |
|
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|
1238 void Answer(RestApiOutput& output, |
|
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1239 bool compress) |
|
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1240 { |
|
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1241 if ((depth_ == 0 && currentDepth_ != 1) || |
|
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|
1242 (depth_ != 0 && currentDepth_ != depth_)) |
|
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1243 { |
|
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|
1244 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
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1245 } |
|
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1246 else |
|
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1247 { |
|
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1248 std::string answer; |
|
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|
1249 NumpyWriter::Finalize(answer, buffer_, compress); |
|
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|
1250 output.AnswerBuffer(answer, MimeType_Binary); |
|
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1251 } |
|
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|
1252 } |
|
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|
1253 }; |
|
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|
1254 } |
|
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1255 |
|
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1256 |
|
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|
1257 static void GetNumpyFrame(RestApiGetCall& call) |
|
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1258 { |
|
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|
1259 if (call.IsDocumentation()) |
|
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1260 { |
|
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|
1261 DocumentSharedNumpy(call); |
|
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1262 call.GetDocumentation() |
|
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1263 .SetTag("Instances") |
|
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1264 .SetSummary("Decode frame for numpy") |
|
4836
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|
1265 .SetDescription("Decode one frame of interest from the given DICOM instance, for use with numpy in Python. " |
|
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|
1266 "The numpy array has 3 dimensions: (height, width, color channel).") |
|
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|
1267 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
|
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1268 } |
|
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|
1269 else |
|
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|
1270 { |
|
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|
1271 const std::string instanceId = call.GetUriComponent("id", ""); |
|
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|
1272 const bool compress = call.GetBooleanArgument("compress", false); |
|
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|
1273 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1274 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1275 uint32_t frame; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1276 if (!SerializationToolbox::ParseUnsignedInteger32(frame, call.GetUriComponent("frame", "0"))) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1277 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1278 throw OrthancException(ErrorCode_ParameterOutOfRange, "Expected an unsigned integer for the \"frame\" argument"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1279 } |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1280 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1281 NumpyVisitor visitor(0 /* no depth, 2D frame */, rescale); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1282 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1283 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1284 Semaphore::Locker throttling(throttlingSemaphore_); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1285 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1286 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1287 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1288 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1289 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1290 visitor.Answer(call.GetOutput(), compress); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1291 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1292 } |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1293 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1294 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1295 static void GetNumpyInstance(RestApiGetCall& call) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1296 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1297 if (call.IsDocumentation()) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1298 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1299 DocumentSharedNumpy(call); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1300 call.GetDocumentation() |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1301 .SetTag("Instances") |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1302 .SetSummary("Decode instance for numpy") |
|
4836
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1303 .SetDescription("Decode the given DICOM instance, for use with numpy in Python. " |
|
ec1e9571b645
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1304 "The numpy array has 4 dimensions: (frame, height, width, color channel)."); |
|
4834
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1305 } |
|
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download of numpy arrays from the REST API
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|
1306 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1307 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1308 const std::string instanceId = call.GetUriComponent("id", ""); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1309 const bool compress = call.GetBooleanArgument("compress", false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1310 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1311 |
|
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|
1312 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1313 Semaphore::Locker throttling(throttlingSemaphore_); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1314 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1315 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1316 const unsigned int depth = locker.GetDicom().GetFramesCount(); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1317 if (depth == 0) |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1318 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1319 throw OrthancException(ErrorCode_BadFileFormat, "Empty DICOM instance"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1320 } |
|
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changeset
|
1321 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1322 NumpyVisitor visitor(depth, rescale); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1323 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1324 for (unsigned int frame = 0; frame < depth; frame++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1325 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1326 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1327 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1328 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1329 visitor.Answer(call.GetOutput(), compress); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1330 } |
|
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|
1331 } |
|
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changeset
|
1332 } |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1333 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1334 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1335 static void GetNumpySeries(RestApiGetCall& call) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1336 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1337 if (call.IsDocumentation()) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1338 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1339 DocumentSharedNumpy(call); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1340 call.GetDocumentation() |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1341 .SetTag("Series") |
|
bec432ee1094
download of numpy arrays from the REST API
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|
1342 .SetSummary("Decode series for numpy") |
|
4836
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1343 .SetDescription("Decode the given DICOM series, for use with numpy in Python. " |
|
ec1e9571b645
document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1344 "The numpy array has 4 dimensions: (frame, height, width, color channel)."); |
|
4834
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download of numpy arrays from the REST API
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|
1345 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1346 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1347 { |
|
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diff
changeset
|
1348 const std::string seriesId = call.GetUriComponent("id", ""); |
|
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download of numpy arrays from the REST API
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changeset
|
1349 const bool compress = call.GetBooleanArgument("compress", false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1350 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1351 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1352 Semaphore::Locker throttling(throttlingSemaphore_); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1353 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1354 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1355 SliceOrdering ordering(index, seriesId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1356 |
|
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download of numpy arrays from the REST API
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|
1357 unsigned int depth = 0; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1358 for (size_t i = 0; i < ordering.GetInstancesCount(); i++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1359 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1360 depth += ordering.GetFramesCount(i); |
|
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download of numpy arrays from the REST API
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changeset
|
1361 } |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1362 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1363 ServerContext& context = OrthancRestApi::GetContext(call); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1364 |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1365 NumpyVisitor visitor(depth, rescale); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1366 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1367 for (size_t i = 0; i < ordering.GetInstancesCount(); i++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1368 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1369 const std::string& instanceId = ordering.GetInstanceId(i); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1370 unsigned int framesCount = ordering.GetFramesCount(i); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1371 |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1372 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1373 ServerContext::DicomCacheLocker locker(context, instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1374 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1375 for (unsigned int frame = 0; frame < framesCount; frame++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1376 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1377 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
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parents:
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diff
changeset
|
1378 } |
|
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diff
changeset
|
1379 } |
|
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changeset
|
1380 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1381 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1382 visitor.Answer(call.GetOutput(), compress); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1383 } |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1384 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1385 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1386 |
| 974 | 1387 static void GetMatlabImage(RestApiGetCall& call) |
|
874
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|
1388 { |
| 4414 | 1389 if (call.IsDocumentation()) |
| 1390 { | |
| 1391 std::string description; | |
| 1392 | |
| 1393 if (call.HasUriComponent("frame")) | |
| 1394 { | |
| 1395 description = "Decode one frame of interest from the given DICOM instance"; | |
| 1396 call.GetDocumentation() | |
| 1397 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
| 1398 } | |
| 1399 else | |
| 1400 { | |
| 1401 description = "Decode the first frame of the given DICOM instance."; | |
| 1402 } | |
| 1403 | |
| 1404 call.GetDocumentation() | |
| 1405 .SetTag("Instances") | |
| 1406 .SetSummary("Decode frame for Matlab") | |
| 1407 .SetDescription(description + ", and export this frame as a Octave/Matlab matrix to be imported with `eval()`: " | |
| 1408 "https://book.orthanc-server.com/faq/matlab.html") | |
| 1409 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 1410 .AddAnswerType(MimeType_PlainText, "Octave/Matlab matrix"); | |
| 1411 return; | |
| 1412 } | |
| 1413 | |
|
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|
1414 Semaphore::Locker locker(throttlingSemaphore_); |
|
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|
1415 |
|
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|
1416 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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1417 |
|
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|
1418 std::string frameId = call.GetUriComponent("frame", "0"); |
|
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1419 |
|
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|
1420 unsigned int frame; |
|
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|
1421 try |
|
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|
1422 { |
|
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|
1423 frame = boost::lexical_cast<unsigned int>(frameId); |
|
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1424 } |
|
2836
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|
1425 catch (boost::bad_lexical_cast&) |
|
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1426 { |
|
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|
1427 return; |
|
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|
1428 } |
|
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|
1429 |
|
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|
1430 std::string publicId = call.GetUriComponent("id", ""); |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1431 std::unique_ptr<ImageAccessor> decoded(context.DecodeDicomFrame(publicId, frame)); |
|
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|
1432 |
|
3928
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ServerContext::DecodeDicomFrame()
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|
1433 if (decoded.get() == NULL) |
|
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ServerContext::DecodeDicomFrame()
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1434 { |
|
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ServerContext::DecodeDicomFrame()
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|
1435 throw OrthancException(ErrorCode_NotImplemented, |
|
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ServerContext::DecodeDicomFrame()
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|
1436 "Cannot decode DICOM instance with ID: " + publicId); |
|
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ServerContext::DecodeDicomFrame()
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|
1437 } |
|
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ServerContext::DecodeDicomFrame()
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1438 else |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1439 { |
|
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ServerContext::DecodeDicomFrame()
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|
1440 std::string result; |
|
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ServerContext::DecodeDicomFrame()
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|
1441 decoded->ToMatlabString(result); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1442 call.GetOutput().AnswerBuffer(result, MimeType_PlainText); |
|
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ServerContext::DecodeDicomFrame()
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|
1443 } |
|
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|
1444 } |
|
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|
1445 |
|
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|
1446 |
|
2408
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|
1447 template <bool GzipCompression> |
|
1924
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diff
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|
1448 static void GetRawFrame(RestApiGetCall& call) |
|
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|
1449 { |
| 4408 | 1450 if (call.IsDocumentation()) |
| 1451 { | |
| 1452 call.GetDocumentation() | |
| 1453 .SetTag("Instances") | |
| 1454 .SetSummary("Access raw frame" + std::string(GzipCompression ? " (compressed)" : "")) | |
| 1455 .SetDescription("Access the raw content of one individual frame of the DICOM instance of interest, " | |
| 1456 "bypassing image decoding. This is notably useful to access the source files " | |
| 1457 "in compressed transfer syntaxes." + | |
| 1458 std::string(GzipCompression ? " The image is compressed using gzip" : "")) | |
|
4424
83371ccdfe80
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|
1459 .SetUriArgument("id", "Orthanc identifier of the instance of interest") |
| 4408 | 1460 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
| 1461 | |
| 1462 if (GzipCompression) | |
| 1463 { | |
| 1464 call.GetDocumentation().AddAnswerType(MimeType_Gzip, "The raw frame, compressed using gzip"); | |
| 1465 } | |
| 1466 else | |
| 1467 { | |
| 1468 call.GetDocumentation().AddAnswerType(MimeType_Binary, "The raw frame"); | |
| 1469 } | |
| 1470 return; | |
| 1471 } | |
| 1472 | |
|
1924
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diff
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|
1473 std::string frameId = call.GetUriComponent("frame", "0"); |
|
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1474 |
|
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|
1475 unsigned int frame; |
|
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|
1476 try |
|
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|
1477 { |
|
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|
1478 frame = boost::lexical_cast<unsigned int>(frameId); |
|
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|
1479 } |
|
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|
1480 catch (boost::bad_lexical_cast&) |
|
1924
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|
1481 { |
|
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|
1482 return; |
|
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|
1483 } |
|
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|
1484 |
|
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|
1485 std::string publicId = call.GetUriComponent("id", ""); |
|
2908
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|
1486 std::string raw; |
|
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|
1487 MimeType mime; |
|
1924
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1488 |
|
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1489 { |
|
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|
1490 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
|
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|
1491 locker.GetDicom().GetRawFrame(raw, mime, frame); |
|
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1492 } |
|
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|
1493 |
|
2408
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|
1494 if (GzipCompression) |
|
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|
1495 { |
|
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|
1496 GzipCompressor gzip; |
|
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|
1497 std::string compressed; |
|
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|
1498 gzip.Compress(compressed, raw.empty() ? NULL : raw.c_str(), raw.size()); |
|
2908
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|
1499 call.GetOutput().AnswerBuffer(compressed, MimeType_Gzip); |
|
2408
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1500 } |
|
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|
1501 else |
|
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1502 { |
|
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|
1503 call.GetOutput().AnswerBuffer(raw, mime); |
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|
1504 } |
|
1924
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1505 } |
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1506 |
|
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1507 |
| 974 | 1508 static void GetResourceStatistics(RestApiGetCall& call) |
|
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|
1509 { |
| 4418 | 1510 if (call.IsDocumentation()) |
| 1511 { | |
| 1512 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1513 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1514 call.GetDocumentation() | |
| 1515 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1516 .SetSummary("Get " + r + " statistics") | |
| 1517 .SetDescription("Get statistics about the given " + r) | |
| 1518 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1519 .SetAnswerField("DiskSize", RestApiCallDocumentation::Type_String, | |
| 1520 "Size of the " + r + " on the disk in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1521 .SetAnswerField("DiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1522 "Size of the " + r + " on the disk, expressed in megabytes (MB)") | |
| 1523 .SetAnswerField("UncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1524 "Size of the " + r + " after decompression in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1525 .SetAnswerField("UncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1526 "Size of the " + r + " after decompression, expressed in megabytes (MB). " | |
| 1527 "This is different from `DiskSizeMB` iff `StorageCompression` is `true`.") | |
| 1528 .SetAnswerField("DicomDiskSize", RestApiCallDocumentation::Type_String, | |
| 1529 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1530 .SetAnswerField("DicomDiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1531 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1532 .SetAnswerField("DicomUncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1533 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1534 .SetAnswerField("DicomUncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1535 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1536 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/statistics", true); | |
| 1537 | |
| 1538 switch (t) | |
| 1539 { | |
| 1540 // Do NOT add "break" below this point! | |
| 1541 case ResourceType_Patient: | |
| 1542 call.GetDocumentation().SetAnswerField("CountStudies", RestApiCallDocumentation::Type_Number, | |
| 1543 "Number of child studies within this " + r); | |
| 1544 | |
| 1545 case ResourceType_Study: | |
| 1546 call.GetDocumentation().SetAnswerField("CountSeries", RestApiCallDocumentation::Type_Number, | |
| 1547 "Number of child series within this " + r); | |
| 1548 | |
| 1549 case ResourceType_Series: | |
| 1550 call.GetDocumentation().SetAnswerField("CountInstances", RestApiCallDocumentation::Type_Number, | |
| 1551 "Number of child instances within this " + r); | |
| 1552 | |
| 1553 case ResourceType_Instance: | |
| 1554 default: | |
| 1555 break; | |
| 1556 } | |
| 1557 | |
| 1558 return; | |
| 1559 } | |
| 1560 | |
|
3174
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1561 static const uint64_t MEGA_BYTES = 1024 * 1024; |
|
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1562 |
|
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|
1563 std::string publicId = call.GetUriComponent("id", ""); |
|
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|
1564 |
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1565 ResourceType type; |
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1566 uint64_t diskSize, uncompressedSize, dicomDiskSize, dicomUncompressedSize; |
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1567 unsigned int countStudies, countSeries, countInstances; |
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1568 OrthancRestApi::GetIndex(call).GetResourceStatistics( |
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1569 type, diskSize, uncompressedSize, countStudies, countSeries, |
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1570 countInstances, dicomDiskSize, dicomUncompressedSize, publicId); |
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1571 |
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1572 Json::Value result = Json::objectValue; |
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1573 result["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1574 result["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
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1575 result["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1576 result["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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1577 |
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1578 result["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1579 result["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1580 result["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1581 result["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1582 |
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1583 switch (type) |
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1584 { |
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1585 // Do NOT add "break" below this point! |
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1586 case ResourceType_Patient: |
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1587 result["CountStudies"] = countStudies; |
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1588 |
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1589 case ResourceType_Study: |
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1590 result["CountSeries"] = countSeries; |
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1591 |
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1592 case ResourceType_Series: |
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1593 result["CountInstances"] = countInstances; |
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1594 |
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1595 case ResourceType_Instance: |
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1596 default: |
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1597 break; |
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1598 } |
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1599 |
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1600 call.GetOutput().AnswerJson(result); |
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1601 } |
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1602 |
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1603 |
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1604 |
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1605 // Handling of metadata ----------------------------------------------------- |
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1606 |
| 4205 | 1607 static void CheckValidResourceType(const RestApiCall& call) |
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1608 { |
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1609 assert(!call.GetFullUri().empty()); |
| 4409 | 1610 const std::string resourceType = call.GetFullUri() [0]; |
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1611 StringToResourceType(resourceType.c_str()); |
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1612 } |
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1613 |
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1614 |
| 974 | 1615 static void ListMetadata(RestApiGetCall& call) |
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1616 { |
| 4414 | 1617 if (call.IsDocumentation()) |
| 1618 { | |
| 1619 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1620 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1621 call.GetDocumentation() | |
| 1622 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1623 .SetSummary("List metadata") | |
| 1624 .SetDescription("Get the list of metadata that are associated with the given " + r) | |
| 1625 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1626 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, | |
| 1627 "If present, also retrieve the value of the individual metadata", false) | |
| 1628 .AddAnswerType(MimeType_Json, "JSON array containing the names of the available metadata, " | |
| 1629 "or JSON associative array mapping metadata to their values (if `expand` argument is provided)") | |
| 1630 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/metadata", true); | |
| 1631 return; | |
| 1632 } | |
| 1633 | |
|
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1634 assert(!call.GetFullUri().empty()); |
| 4554 | 1635 const std::string publicId = call.GetUriComponent("id", ""); |
| 1636 ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); | |
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1637 |
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1638 typedef std::map<MetadataType, std::string> Metadata; |
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1639 |
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1640 Metadata metadata; |
| 4554 | 1641 OrthancRestApi::GetIndex(call).GetAllMetadata(metadata, publicId, level); |
|
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1642 |
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1643 Json::Value result; |
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1644 |
|
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1645 if (call.HasArgument("expand")) |
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1646 { |
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1647 result = Json::objectValue; |
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1648 |
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1649 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
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1650 { |
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1651 std::string key = EnumerationToString(it->first); |
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1652 result[key] = it->second; |
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1653 } |
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1654 } |
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1655 else |
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1656 { |
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1657 result = Json::arrayValue; |
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1658 |
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1659 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
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1660 { |
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1661 result.append(EnumerationToString(it->first)); |
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1662 } |
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1663 } |
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1664 |
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1665 call.GetOutput().AnswerJson(result); |
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1666 } |
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1667 |
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1668 |
| 4657 | 1669 static void SetStringContentETag(const RestApiOutput& output, |
| 1670 int64_t revision, | |
| 1671 const std::string& value) | |
|
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1672 { |
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1673 std::string md5; |
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1674 Toolbox::ComputeMD5(md5, value); |
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1675 const std::string etag = "\"" + boost::lexical_cast<std::string>(revision) + "-" + md5 + "\""; |
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1676 output.GetLowLevelOutput().AddHeader("ETag", etag); |
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1677 } |
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1678 |
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1679 |
| 4657 | 1680 static void SetBufferContentETag(const RestApiOutput& output, |
|
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1681 int64_t revision, |
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1682 const void* data, |
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1683 size_t size) |
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1684 { |
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|
1685 std::string md5; |
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1686 Toolbox::ComputeMD5(md5, data, size); |
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1687 const std::string etag = "\"" + boost::lexical_cast<std::string>(revision) + "-" + md5 + "\""; |
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1688 output.GetLowLevelOutput().AddHeader("ETag", etag); |
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1689 } |
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1690 |
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1691 |
| 4657 | 1692 static void SetAttachmentETag(const RestApiOutput& output, |
|
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1693 int64_t revision, |
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1694 const FileInfo& info) |
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1695 { |
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1696 const std::string etag = ("\"" + boost::lexical_cast<std::string>(revision) + "-" + |
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1697 info.GetUncompressedMD5() + "\""); |
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1698 output.GetLowLevelOutput().AddHeader("ETag", etag); |
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1699 } |
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1700 |
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1701 |
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1702 static std::string GetMD5(const std::string& value) |
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1703 { |
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1704 std::string md5; |
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1705 Toolbox::ComputeMD5(md5, value); |
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1706 return md5; |
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1707 } |
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1708 |
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1709 |
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1710 static bool GetRevisionHeader(int64_t& revision /* out */, |
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1711 std::string& md5 /* out */, |
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1712 const RestApiCall& call, |
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1713 const std::string& header) |
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1714 { |
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1715 std::string lower; |
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1716 Toolbox::ToLowerCase(lower, header); |
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1717 |
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1718 HttpToolbox::Arguments::const_iterator found = call.GetHttpHeaders().find(lower); |
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1719 if (found == call.GetHttpHeaders().end()) |
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1720 { |
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1721 return false; |
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1722 } |
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1723 else |
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1724 { |
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1725 std::string value = Toolbox::StripSpaces(found->second); |
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1726 Toolbox::RemoveSurroundingQuotes(value); |
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1727 |
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1728 try |
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1729 { |
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1730 size_t comma = value.find('-'); |
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1731 if (comma != std::string::npos) |
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1732 { |
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1733 revision = boost::lexical_cast<int64_t>(value.substr(0, comma)); |
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1734 md5 = value.substr(comma + 1); |
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1735 return true; |
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1736 } |
|
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1737 } |
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1738 catch (boost::bad_lexical_cast&) |
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1739 { |
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1740 } |
|
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1741 |
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1742 throw OrthancException(ErrorCode_ParameterOutOfRange, "The \"" + header + |
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1743 "\" HTTP header should contain the ETag (revision followed by MD5 hash), but found: " + value); |
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1744 } |
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1745 } |
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1746 |
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1747 |
| 974 | 1748 static void GetMetadata(RestApiGetCall& call) |
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1749 { |
| 4414 | 1750 if (call.IsDocumentation()) |
| 1751 { | |
| 1752 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1753 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1754 call.GetDocumentation() | |
| 1755 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1756 .SetSummary("Get metadata") | |
| 1757 .SetDescription("Get the value of a metadata that is associated with the given " + r) | |
| 1758 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1759 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
|
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1760 .AddAnswerType(MimeType_PlainText, "Value of the metadata") |
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1761 .SetAnswerHeader("ETag", "Revision of the metadata, to be used in further `PUT` or `DELETE` operations") |
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1762 .SetHttpHeader("If-None-Match", "Optional revision of the metadata, to check if its content has changed"); |
| 4414 | 1763 return; |
| 1764 } | |
| 1765 | |
|
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1766 assert(!call.GetFullUri().empty()); |
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1767 const std::string publicId = call.GetUriComponent("id", ""); |
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1768 const ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); |
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1769 |
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1770 std::string name = call.GetUriComponent("name", ""); |
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1771 MetadataType metadata = StringToMetadata(name); |
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1772 |
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1773 std::string value; |
|
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1774 int64_t revision; |
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1775 if (OrthancRestApi::GetIndex(call).LookupMetadata(value, revision, publicId, level, metadata)) |
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1776 { |
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1777 SetStringContentETag(call.GetOutput(), revision, value); // New in Orthanc 1.9.2 |
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1778 |
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1779 int64_t userRevision; |
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1780 std::string userMD5; |
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1781 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
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1782 userRevision == revision && |
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1783 userMD5 == GetMD5(value)) |
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1784 { |
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1785 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
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1786 } |
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1787 else |
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1788 { |
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1789 call.GetOutput().AnswerBuffer(value, MimeType_PlainText); |
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1790 } |
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1791 } |
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1792 } |
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1793 |
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1794 |
| 974 | 1795 static void DeleteMetadata(RestApiDeleteCall& call) |
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1796 { |
| 4414 | 1797 if (call.IsDocumentation()) |
| 1798 { | |
| 1799 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1800 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1801 call.GetDocumentation() | |
| 1802 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1803 .SetSummary("Delete metadata") | |
| 1804 .SetDescription("Delete some metadata associated with the given DICOM " + r + | |
| 1805 ". This call will fail if trying to delete a system metadata (i.e. whose index is < 1024).") | |
| 1806 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
|
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1807 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") |
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1808 .SetHttpHeader("If-Match", "Revision of the metadata, to check if its content has not changed and can " |
|
4661
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1809 "be deleted. This header is mandatory if `CheckRevisions` option is `true`."); |
| 4414 | 1810 return; |
| 1811 } | |
| 1812 | |
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1813 CheckValidResourceType(call); |
|
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1814 const std::string publicId = call.GetUriComponent("id", ""); |
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1815 |
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1816 std::string name = call.GetUriComponent("name", ""); |
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1817 MetadataType metadata = StringToMetadata(name); |
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1818 |
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1819 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
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1820 { |
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1821 bool found; |
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1822 int64_t revision; |
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1823 std::string md5; |
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1824 if (GetRevisionHeader(revision, md5, call, "if-match")) |
|
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1825 { |
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1826 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, true, revision, md5); |
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1827 } |
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1828 else |
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1829 { |
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1830 OrthancConfiguration::ReaderLock lock; |
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1831 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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1832 { |
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1833 throw OrthancException(ErrorCode_Revision, |
|
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1834 "HTTP header \"If-Match\" is missing, as \"CheckRevisions\" is \"true\""); |
|
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1835 } |
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1836 else |
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1837 { |
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1838 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, false, -1 /* dummy value */, ""); |
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1839 } |
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1840 } |
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1841 |
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1842 if (found) |
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1843 { |
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1844 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1845 } |
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1846 else |
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1847 { |
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1848 throw OrthancException(ErrorCode_UnknownResource); |
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1849 } |
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1850 } |
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1851 else |
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1852 { |
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1853 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1854 } |
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1855 } |
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1856 |
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1857 |
| 974 | 1858 static void SetMetadata(RestApiPutCall& call) |
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1859 { |
| 4414 | 1860 if (call.IsDocumentation()) |
| 1861 { | |
| 1862 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1863 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1864 call.GetDocumentation() | |
| 1865 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1866 .SetSummary("Set metadata") | |
| 1867 .SetDescription("Set the value of some metadata in the given DICOM " + r + | |
| 1868 ". This call will fail if trying to modify a system metadata (i.e. whose index is < 1024).") | |
| 1869 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1870 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
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1871 .AddRequestType(MimeType_PlainText, "String value of the metadata") |
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1872 .SetHttpHeader("If-Match", "Revision of the metadata, if this is not the first time this metadata is set."); |
| 4414 | 1873 return; |
| 1874 } | |
| 1875 | |
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1876 CheckValidResourceType(call); |
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1877 |
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1878 std::string publicId = call.GetUriComponent("id", ""); |
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1879 std::string name = call.GetUriComponent("name", ""); |
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1880 MetadataType metadata = StringToMetadata(name); |
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1881 |
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1882 std::string value; |
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1883 call.BodyToString(value); |
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1884 |
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1885 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
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1886 { |
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1887 int64_t oldRevision; |
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1888 std::string oldMD5; |
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1889 bool hasOldRevision = GetRevisionHeader(oldRevision, oldMD5, call, "if-match"); |
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1890 |
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1891 if (!hasOldRevision) |
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1892 { |
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1893 OrthancConfiguration::ReaderLock lock; |
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1894 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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1895 { |
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1896 // "StatelessDatabaseOperations::SetMetadata()" will ignore |
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1897 // the actual value of "oldRevision" if the metadata is |
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1898 // inexistent as expected |
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1899 hasOldRevision = true; |
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1900 oldRevision = -1; // dummy value |
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1901 oldMD5.clear(); // dummy value |
|
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1902 } |
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1903 } |
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1904 |
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1905 int64_t newRevision; |
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1906 OrthancRestApi::GetIndex(call).SetMetadata(newRevision, publicId, metadata, value, |
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1907 hasOldRevision, oldRevision, oldMD5); |
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1908 |
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1909 SetStringContentETag(call.GetOutput(), newRevision, value); // New in Orthanc 1.9.2 |
|
2908
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1910 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1911 } |
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1912 else |
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1913 { |
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1914 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1915 } |
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1916 } |
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1917 |
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1918 |
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1919 |
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1920 |
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1921 // Handling of attached files ----------------------------------------------- |
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1922 |
| 974 | 1923 static void ListAttachments(RestApiGetCall& call) |
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1924 { |
| 4409 | 1925 if (call.IsDocumentation()) |
| 1926 { | |
| 1927 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1928 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1929 call.GetDocumentation() | |
| 1930 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1931 .SetSummary("List attachments") | |
| 1932 .SetDescription("Get the list of attachments that are associated with the given " + r) | |
| 1933 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
|
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1934 .SetHttpGetArgument("full", RestApiCallDocumentation::Type_String, |
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1935 "If present, retrieve the attachments list and their numerical ids", false) |
| 4409 | 1936 .AddAnswerType(MimeType_Json, "JSON array containing the names of the attachments") |
| 1937 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/attachments", true); | |
| 1938 return; | |
| 1939 } | |
| 1940 | |
| 1941 const std::string resourceType = call.GetFullUri() [0]; | |
| 1942 const std::string publicId = call.GetUriComponent("id", ""); | |
|
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1943 std::set<FileContentType> attachments; |
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1944 OrthancRestApi::GetIndex(call).ListAvailableAttachments(attachments, publicId, StringToResourceType(resourceType.c_str())); |
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1945 |
|
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|
1946 Json::Value result; |
|
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1947 |
|
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|
1948 if (call.HasArgument("full")) |
|
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1949 { |
|
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1950 result = Json::objectValue; |
|
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1951 |
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1952 for (std::set<FileContentType>::const_iterator |
|
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1953 it = attachments.begin(); it != attachments.end(); ++it) |
|
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1954 { |
|
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1955 std::string key = EnumerationToString(*it); |
|
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1956 result[key] = static_cast<uint16_t>(*it); |
|
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1957 } |
|
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|
1958 } |
|
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|
1959 else |
|
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|
1960 { |
|
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|
1961 result = Json::arrayValue; |
|
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|
1962 |
|
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|
1963 for (std::set<FileContentType>::const_iterator |
|
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1964 it = attachments.begin(); it != attachments.end(); ++it) |
|
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|
1965 { |
|
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|
1966 result.append(EnumerationToString(*it)); |
|
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|
1967 } |
|
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|
1968 } |
|
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|
1969 |
|
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|
1970 call.GetOutput().AnswerJson(result); |
|
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1971 } |
|
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|
1972 |
|
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|
1973 |
|
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1974 static void AddAttachmentDocumentation(RestApiGetCall& call, |
|
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1975 const std::string& resourceType) |
|
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1976 { |
|
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1977 call.GetDocumentation() |
|
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1978 .SetUriArgument("id", "Orthanc identifier of the " + resourceType + " of interest") |
|
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1979 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
|
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1980 .SetAnswerHeader("ETag", "Revision of the attachment, to be used in further `PUT` or `DELETE` operations") |
|
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1981 .SetHttpHeader("If-None-Match", "Optional revision of the attachment, to check if its content has changed"); |
|
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1982 } |
|
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|
1983 |
|
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|
1984 |
|
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|
1985 static bool GetAttachmentInfo(FileInfo& info, |
|
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1986 RestApiGetCall& call) |
|
751
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|
1987 { |
|
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|
1988 CheckValidResourceType(call); |
|
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|
1989 |
|
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|
1990 const std::string publicId = call.GetUriComponent("id", ""); |
|
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|
1991 const std::string name = call.GetUriComponent("name", ""); |
|
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|
1992 FileContentType contentType = StringToContentType(name); |
|
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|
1993 |
|
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|
1994 int64_t revision; |
|
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changeset
|
1995 if (OrthancRestApi::GetIndex(call).LookupAttachment(info, revision, publicId, contentType)) |
|
f7d5372b59b3
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diff
changeset
|
1996 { |
|
4640
66109d24d26e
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|
1997 SetAttachmentETag(call.GetOutput(), revision, info); // New in Orthanc 1.9.2 |
|
4627
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|
1998 |
|
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diff
changeset
|
1999 int64_t userRevision; |
|
4640
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changeset
|
2000 std::string userMD5; |
|
66109d24d26e
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changeset
|
2001 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
|
66109d24d26e
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changeset
|
2002 revision == userRevision && |
|
66109d24d26e
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parents:
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changeset
|
2003 info.GetUncompressedMD5() == userMD5) |
|
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changeset
|
2004 { |
|
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changeset
|
2005 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
|
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|
2006 return false; |
|
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|
2007 } |
|
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4623
diff
changeset
|
2008 else |
|
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parents:
4623
diff
changeset
|
2009 { |
|
f7d5372b59b3
handling revisions of attachments
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parents:
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diff
changeset
|
2010 return true; |
|
f7d5372b59b3
handling revisions of attachments
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parents:
4623
diff
changeset
|
2011 } |
|
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diff
changeset
|
2012 } |
|
f7d5372b59b3
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diff
changeset
|
2013 else |
|
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handling revisions of attachments
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parents:
4623
diff
changeset
|
2014 { |
|
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changeset
|
2015 throw OrthancException(ErrorCode_UnknownResource); |
|
f7d5372b59b3
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parents:
4623
diff
changeset
|
2016 } |
|
751
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diff
changeset
|
2017 } |
|
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parents:
diff
changeset
|
2018 |
|
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diff
changeset
|
2019 |
| 974 | 2020 static void GetAttachmentOperations(RestApiGetCall& call) |
|
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|
2021 { |
| 4409 | 2022 if (call.IsDocumentation()) |
| 2023 { | |
| 2024 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2025 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
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|
2026 AddAttachmentDocumentation(call, r); |
| 4409 | 2027 call.GetDocumentation() |
| 2028 .SetTag("Other") | |
| 4414 | 2029 .SetSummary("List operations on attachments") |
| 2030 .SetDescription("Get the list of the operations that are available for attachments associated with the given " + r) | |
| 4409 | 2031 .AddAnswerType(MimeType_Json, "List of the available operations") |
| 2032 .SetHttpGetSample("https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2/attachments/dicom", true); | |
| 2033 return; | |
| 2034 } | |
| 2035 | |
|
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|
2036 FileInfo info; |
|
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parents:
diff
changeset
|
2037 if (GetAttachmentInfo(info, call)) |
|
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diff
changeset
|
2038 { |
|
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parents:
diff
changeset
|
2039 Json::Value operations = Json::arrayValue; |
|
5197fd35333c
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parents:
diff
changeset
|
2040 |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1556
diff
changeset
|
2041 operations.append("compress"); |
|
751
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parents:
diff
changeset
|
2042 operations.append("compressed-data"); |
|
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parents:
diff
changeset
|
2043 |
|
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parents:
diff
changeset
|
2044 if (info.GetCompressedMD5() != "") |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2045 { |
|
5197fd35333c
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parents:
diff
changeset
|
2046 operations.append("compressed-md5"); |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2047 } |
|
5197fd35333c
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parents:
diff
changeset
|
2048 |
|
5197fd35333c
refactoring of OrthancRestApi
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parents:
diff
changeset
|
2049 operations.append("compressed-size"); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2050 operations.append("data"); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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1556
diff
changeset
|
2051 operations.append("is-compressed"); |
|
751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2052 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2053 if (info.GetUncompressedMD5() != "") |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2054 { |
|
5197fd35333c
refactoring of OrthancRestApi
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parents:
diff
changeset
|
2055 operations.append("md5"); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2056 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2057 |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2058 operations.append("size"); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2059 operations.append("uncompress"); |
|
751
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2060 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2061 if (info.GetCompressedMD5() != "" && |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2062 info.GetUncompressedMD5() != "") |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2063 { |
|
5197fd35333c
refactoring of OrthancRestApi
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parents:
diff
changeset
|
2064 operations.append("verify-md5"); |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2065 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2066 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2067 call.GetOutput().AnswerJson(operations); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2068 } |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2069 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2070 |
|
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2071 |
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2072 template <int uncompress> |
| 974 | 2073 static void GetAttachmentData(RestApiGetCall& call) |
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2074 { |
| 4409 | 2075 if (call.IsDocumentation()) |
| 2076 { | |
| 2077 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2078 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2079 call.GetDocumentation() | |
| 2080 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2081 .SetSummary("Get attachment" + std::string(uncompress ? "" : " (no decompression)")) | |
| 2082 .SetDescription("Get the (binary) content of one attachment associated with the given " + r + | |
| 4418 | 2083 std::string(uncompress ? "" : ". The attachment will not be decompressed if `StorageCompression` is `true`.")) |
| 4409 | 2084 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 2085 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
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2086 .AddAnswerType(MimeType_Binary, "The attachment") |
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2087 .SetAnswerHeader("ETag", "Revision of the attachment, to be used in further `PUT` or `DELETE` operations") |
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2088 .SetHttpHeader("If-None-Match", "Optional revision of the metadata, to check if its content has changed"); |
| 4409 | 2089 return; |
| 2090 } | |
| 2091 | |
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2092 ServerContext& context = OrthancRestApi::GetContext(call); |
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2093 |
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2094 CheckValidResourceType(call); |
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2095 |
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2096 std::string publicId = call.GetUriComponent("id", ""); |
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2097 FileContentType type = StringToContentType(call.GetUriComponent("name", "")); |
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2098 |
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2099 FileInfo info; |
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2100 if (GetAttachmentInfo(info, call)) |
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2101 { |
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2102 // NB: "SetAttachmentETag()" is already invoked by "GetAttachmentInfo()" |
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2103 |
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2104 if (uncompress) |
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2105 { |
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2106 context.AnswerAttachment(call.GetOutput(), publicId, type); |
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2107 } |
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2108 else |
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2109 { |
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2110 // Return the raw data (possibly compressed), as stored on the filesystem |
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2111 std::string content; |
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2112 int64_t revision; |
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2113 context.ReadAttachment(content, revision, publicId, type, false); |
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2114 |
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2115 int64_t userRevision; |
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2116 std::string userMD5; |
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2117 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
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2118 revision == userRevision && |
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2119 info.GetUncompressedMD5() == userMD5) |
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2120 { |
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2121 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
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2122 } |
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2123 else |
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2124 { |
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2125 call.GetOutput().AnswerBuffer(content, MimeType_Binary); |
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2126 } |
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2127 } |
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2128 } |
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2129 } |
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2130 |
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2131 |
| 974 | 2132 static void GetAttachmentSize(RestApiGetCall& call) |
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2133 { |
| 4409 | 2134 if (call.IsDocumentation()) |
| 2135 { | |
| 2136 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2137 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2138 AddAttachmentDocumentation(call, r); |
| 4409 | 2139 call.GetDocumentation() |
| 2140 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2141 .SetSummary("Get size of attachment") | |
| 2142 .SetDescription("Get the size of one attachment associated with the given " + r) | |
| 2143 .AddAnswerType(MimeType_PlainText, "The size of the attachment"); | |
| 2144 return; | |
| 2145 } | |
| 2146 | |
|
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2147 FileInfo info; |
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2148 if (GetAttachmentInfo(info, call)) |
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2149 { |
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2150 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedSize()), MimeType_PlainText); |
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2151 } |
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2152 } |
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2153 |
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2154 |
| 974 | 2155 static void GetAttachmentCompressedSize(RestApiGetCall& call) |
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2156 { |
| 4409 | 2157 if (call.IsDocumentation()) |
| 2158 { | |
| 2159 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2160 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2161 AddAttachmentDocumentation(call, r); |
| 4409 | 2162 call.GetDocumentation() |
| 2163 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 4410 | 2164 .SetSummary("Get size of attachment on disk") |
| 4409 | 2165 .SetDescription("Get the size of one attachment associated with the given " + r + ", as stored on the disk. " |
| 4413 | 2166 "This is different from `.../size` iff `EnableStorage` is `true`.") |
| 4410 | 2167 .AddAnswerType(MimeType_PlainText, "The size of the attachment, as stored on the disk"); |
| 4409 | 2168 return; |
| 2169 } | |
| 2170 | |
|
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2171 FileInfo info; |
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2172 if (GetAttachmentInfo(info, call)) |
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2173 { |
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2174 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedSize()), MimeType_PlainText); |
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2175 } |
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2176 } |
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2177 |
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2178 |
| 974 | 2179 static void GetAttachmentMD5(RestApiGetCall& call) |
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2180 { |
| 4410 | 2181 if (call.IsDocumentation()) |
| 2182 { | |
| 2183 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2184 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2185 AddAttachmentDocumentation(call, r); |
| 4410 | 2186 call.GetDocumentation() |
| 2187 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2188 .SetSummary("Get MD5 of attachment") | |
| 2189 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r) | |
| 2190 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment"); | |
| 2191 return; | |
| 2192 } | |
| 2193 | |
|
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2194 FileInfo info; |
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2195 if (GetAttachmentInfo(info, call) && |
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2196 info.GetUncompressedMD5() != "") |
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2197 { |
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2198 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedMD5()), MimeType_PlainText); |
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2199 } |
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2200 } |
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2201 |
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2202 |
| 974 | 2203 static void GetAttachmentCompressedMD5(RestApiGetCall& call) |
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2204 { |
| 4410 | 2205 if (call.IsDocumentation()) |
| 2206 { | |
| 2207 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2208 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2209 AddAttachmentDocumentation(call, r); |
| 4410 | 2210 call.GetDocumentation() |
| 2211 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2212 .SetSummary("Get MD5 of attachment on disk") | |
| 2213 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r + ", as stored on the disk. " | |
| 4413 | 2214 "This is different from `.../md5` iff `EnableStorage` is `true`.") |
| 4410 | 2215 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment, as stored on the disk"); |
| 2216 return; | |
| 2217 } | |
| 2218 | |
|
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2219 FileInfo info; |
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2220 if (GetAttachmentInfo(info, call) && |
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2221 info.GetCompressedMD5() != "") |
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2222 { |
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2223 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedMD5()), MimeType_PlainText); |
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2224 } |
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2225 } |
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2226 |
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2227 |
| 974 | 2228 static void VerifyAttachment(RestApiPostCall& call) |
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2229 { |
| 4410 | 2230 if (call.IsDocumentation()) |
| 2231 { | |
| 2232 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2233 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2234 call.GetDocumentation() | |
| 2235 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2236 .SetSummary("Verify attachment") | |
| 2237 .SetDescription("Verify that the attachment is not corrupted, by validating its MD5 hash") | |
| 2238 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 2239 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 2240 .AddAnswerType(MimeType_Json, "On success, a valid JSON object is returned"); |
| 2241 return; | |
| 2242 } | |
| 2243 | |
|
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2244 ServerContext& context = OrthancRestApi::GetContext(call); |
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2245 CheckValidResourceType(call); |
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|
2246 |
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2247 std::string publicId = call.GetUriComponent("id", ""); |
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2248 std::string name = call.GetUriComponent("name", ""); |
|
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2249 FileContentType contentType = StringToContentType(name); |
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2250 |
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|
2251 FileInfo info; |
|
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2252 int64_t revision; // Ignored |
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2253 if (!OrthancRestApi::GetIndex(call).LookupAttachment(info, revision, publicId, contentType) || |
|
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2254 info.GetCompressedMD5() == "" || |
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2255 info.GetUncompressedMD5() == "") |
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2256 { |
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2257 // Inexistent resource, or no MD5 available |
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2258 return; |
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|
2259 } |
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|
2260 |
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2261 bool ok = false; |
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2262 |
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2263 // First check whether the compressed data is correctly stored in the disk |
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2264 std::string data; |
|
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2265 context.ReadAttachment(data, revision, publicId, StringToContentType(name), false); |
|
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2266 |
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2267 std::string actualMD5; |
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2268 Toolbox::ComputeMD5(actualMD5, data); |
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2269 |
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2270 if (actualMD5 == info.GetCompressedMD5()) |
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2271 { |
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2272 // The compressed data is OK. If a compression algorithm was |
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2273 // applied to it, now check the MD5 of the uncompressed data. |
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2274 if (info.GetCompressionType() == CompressionType_None) |
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2275 { |
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2276 ok = true; |
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2277 } |
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2278 else |
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2279 { |
|
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2280 context.ReadAttachment(data, revision, publicId, StringToContentType(name), true); |
|
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2281 Toolbox::ComputeMD5(actualMD5, data); |
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2282 ok = (actualMD5 == info.GetUncompressedMD5()); |
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2283 } |
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2284 } |
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|
2285 |
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2286 if (ok) |
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2287 { |
|
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|
2288 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has the right MD5"; |
|
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2289 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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2290 } |
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2291 else |
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2292 { |
|
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2293 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has bad MD5!"; |
|
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2294 } |
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2295 } |
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2296 |
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2297 |
| 974 | 2298 static void UploadAttachment(RestApiPutCall& call) |
|
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2299 { |
| 4414 | 2300 if (call.IsDocumentation()) |
| 2301 { | |
| 2302 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2303 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2304 call.GetDocumentation() | |
| 2305 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2306 .SetSummary("Set attachment") | |
| 2307 .SetDescription("Attach a file to the given DICOM " + r + | |
| 2308 ". This call will fail if trying to modify a system attachment (i.e. whose index is < 1024).") | |
| 2309 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 2310 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") | |
| 2311 .AddRequestType(MimeType_Binary, "Binary data containing the attachment") | |
|
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2312 .AddAnswerType(MimeType_Json, "Empty JSON object in the case of a success") |
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2313 .SetHttpHeader("If-Match", "Revision of the attachment, if this is not the first time this attachment is set."); |
| 4414 | 2314 return; |
| 2315 } | |
| 2316 | |
|
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2317 ServerContext& context = OrthancRestApi::GetContext(call); |
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2318 CheckValidResourceType(call); |
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2319 |
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2320 std::string publicId = call.GetUriComponent("id", ""); |
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2321 std::string name = call.GetUriComponent("name", ""); |
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2322 |
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2323 FileContentType contentType = StringToContentType(name); |
|
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2324 if (IsUserContentType(contentType)) // It is forbidden to modify internal attachments |
|
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2325 { |
|
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|
2326 int64_t oldRevision; |
|
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2327 std::string oldMD5; |
|
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2328 bool hasOldRevision = GetRevisionHeader(oldRevision, oldMD5, call, "if-match"); |
|
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2329 |
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2330 if (!hasOldRevision) |
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2331 { |
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2332 OrthancConfiguration::ReaderLock lock; |
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2333 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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2334 { |
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2335 // "StatelessDatabaseOperations::AddAttachment()" will ignore |
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2336 // the actual value of "oldRevision" if the metadata is |
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2337 // inexistent as expected |
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2338 hasOldRevision = true; |
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2339 oldRevision = -1; // dummy value |
|
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|
2340 oldMD5.clear(); // dummy value |
|
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2341 } |
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2342 } |
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2343 |
|
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2344 int64_t newRevision; |
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2345 context.AddAttachment(newRevision, publicId, StringToContentType(name), call.GetBodyData(), |
|
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2346 call.GetBodySize(), hasOldRevision, oldRevision, oldMD5); |
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2347 |
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|
2348 SetBufferContentETag(call.GetOutput(), newRevision, call.GetBodyData(), call.GetBodySize()); // New in Orthanc 1.9.2 |
|
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2349 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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2350 } |
|
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2351 else |
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2352 { |
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|
2353 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
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2354 } |
|
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2355 } |
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|
2356 |
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2357 |
| 974 | 2358 static void DeleteAttachment(RestApiDeleteCall& call) |
|
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2359 { |
| 4413 | 2360 if (call.IsDocumentation()) |
| 2361 { | |
| 2362 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2363 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2364 call.GetDocumentation() | |
| 2365 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2366 .SetSummary("Delete attachment") | |
| 4414 | 2367 .SetDescription("Delete an attachment associated with the given DICOM " + r + |
| 2368 ". This call will fail if trying to delete a system attachment (i.e. whose index is < 1024).") | |
| 4413 | 2369 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
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changeset
|
2370 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2371 .SetHttpHeader("If-Match", "Revision of the attachment, to check if its content has not changed and can " |
|
4661
b1d87d41874e
typo: replaced "CheckRevision" by "CheckRevisions"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4657
diff
changeset
|
2372 "be deleted. This header is mandatory if `CheckRevisions` option is `true`."); |
| 4413 | 2373 return; |
| 2374 } | |
| 2375 | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2376 CheckValidResourceType(call); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2377 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2378 std::string publicId = call.GetUriComponent("id", ""); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2379 std::string name = call.GetUriComponent("name", ""); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2380 FileContentType contentType = StringToContentType(name); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2381 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2382 bool allowed; |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2383 if (IsUserContentType(contentType)) |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2384 { |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2385 allowed = true; |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2386 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2387 else |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2388 { |
|
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2389 OrthancConfiguration::ReaderLock lock; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2390 |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2391 if (lock.GetConfiguration().GetBooleanParameter("StoreDicom", true) && |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2392 contentType == FileContentType_DicomAsJson) |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2393 { |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2394 allowed = true; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2395 } |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2396 else |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2397 { |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2398 // It is forbidden to delete internal attachments, except for |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2399 // the "DICOM as JSON" summary as of Orthanc 1.2.0 (this summary |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2400 // would be automatically reconstructed on the next GET call) |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2401 allowed = false; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2402 } |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2403 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2404 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2405 if (allowed) |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2406 { |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2407 bool found; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2408 int64_t revision; |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2409 std::string md5; |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2410 if (GetRevisionHeader(revision, md5, call, "if-match")) |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2411 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2412 found = OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType, true, revision, md5); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2413 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2414 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2415 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2416 OrthancConfiguration::ReaderLock lock; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2417 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2418 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2419 throw OrthancException(ErrorCode_Revision, |
|
4661
b1d87d41874e
typo: replaced "CheckRevision" by "CheckRevisions"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4657
diff
changeset
|
2420 "HTTP header \"If-Match\" is missing, as \"CheckRevisions\" is \"true\""); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2421 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2422 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2423 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2424 found = OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType, |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2425 false, -1 /* dummy value */, "" /* dummy value */); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2426 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2427 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2428 |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2429 if (found) |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2430 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2431 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2432 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2433 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2434 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2435 throw OrthancException(ErrorCode_UnknownResource); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2436 } |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2437 } |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2438 else |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2439 { |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2440 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2441 } |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2442 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2443 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2444 |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2445 template <enum CompressionType compression> |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2446 static void ChangeAttachmentCompression(RestApiPostCall& call) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2447 { |
| 4413 | 2448 if (call.IsDocumentation()) |
| 2449 { | |
| 2450 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2451 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2452 call.GetDocumentation() | |
| 2453 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2454 .SetSummary(compression == CompressionType_None ? "Uncompress attachment" : "Compress attachment") | |
| 2455 .SetDescription("Change the compression scheme that is used to store an attachment.") | |
| 2456 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 2457 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
| 4413 | 2458 return; |
| 2459 } | |
| 2460 | |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2461 CheckValidResourceType(call); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2462 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2463 std::string publicId = call.GetUriComponent("id", ""); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2464 std::string name = call.GetUriComponent("name", ""); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2465 FileContentType contentType = StringToContentType(name); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2466 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2467 OrthancRestApi::GetContext(call).ChangeAttachmentCompression(publicId, contentType, compression); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2468 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2469 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2470 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2471 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2472 static void IsAttachmentCompressed(RestApiGetCall& call) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2473 { |
| 4413 | 2474 if (call.IsDocumentation()) |
| 2475 { | |
| 2476 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2477 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2478 AddAttachmentDocumentation(call, r); |
| 4413 | 2479 call.GetDocumentation() |
| 2480 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2481 .SetSummary("Is attachment compressed?") | |
| 2482 .SetDescription("Test whether the attachment has been stored as a compressed file on the disk.") | |
| 2483 .AddAnswerType(MimeType_PlainText, "`0` if the attachment was stored uncompressed, `1` if it was compressed"); | |
| 2484 return; | |
| 2485 } | |
| 2486 | |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2487 FileInfo info; |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2488 if (GetAttachmentInfo(info, call)) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2489 { |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2490 std::string answer = (info.GetCompressionType() == CompressionType_None) ? "0" : "1"; |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2491 call.GetOutput().AnswerBuffer(answer, MimeType_PlainText); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2492 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2493 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2494 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2495 |
| 782 | 2496 // Raw access to the DICOM tags of an instance ------------------------------ |
| 2497 | |
| 974 | 2498 static void GetRawContent(RestApiGetCall& call) |
| 782 | 2499 { |
|
4405
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gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2500 if (call.IsDocumentation()) |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2501 { |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2502 call.GetDocumentation() |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2503 .SetTag("Instances") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2504 .SetSummary("Get raw tag") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2505 .SetDescription("Get the raw content of one DICOM tag in the hierarchy of DICOM dataset") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2506 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2507 .SetUriArgument("...", "Path to the DICOM tag. This is the interleaving of one DICOM tag, possibly followed " |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2508 "by an index for sequences. Sequences are accessible as, for instance, `/0008-1140/1/0008-1150`") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2509 .AddAnswerType(MimeType_Binary, "The raw value of the tag of intereset " |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2510 "(binary data, whose memory layout depends on the underlying transfer syntax), " |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2511 "or JSON array containing the list of available tags if accessing a dataset"); |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2512 return; |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2513 } |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2514 |
| 782 | 2515 std::string id = call.GetUriComponent("id", ""); |
| 2516 | |
| 2517 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); | |
| 2518 | |
| 2519 locker.GetDicom().SendPathValue(call.GetOutput(), call.GetTrailingUri()); | |
| 2520 } | |
| 2521 | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2522 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2523 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2524 static bool ExtractSharedTags(Json::Value& shared, |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2525 ServerContext& context, |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2526 const std::string& publicId) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2527 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2528 // Retrieve all the instances of this patient/study/series |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2529 typedef std::list<std::string> Instances; |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2530 Instances instances; |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2531 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2532 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2533 // Loop over the instances |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2534 bool isFirst = true; |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2535 shared = Json::objectValue; |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2536 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2537 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 2538 it != instances.end(); ++it) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2539 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2540 // Get the tags of the current instance, in the simplified format |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2541 Json::Value tags; |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
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958
diff
changeset
|
2542 |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
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958
diff
changeset
|
2543 try |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2544 { |
| 2124 | 2545 context.ReadDicomAsJson(tags, *it); |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2546 } |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2547 catch (OrthancException&) |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2548 { |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2549 // Race condition: This instance has been removed since |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2550 // (*). Ignore this instance. |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2551 continue; |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2552 } |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2553 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2554 if (tags.type() != Json::objectValue) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2555 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2556 return false; // Error |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2557 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2558 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2559 // Only keep the tags that are mapped to a string |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2560 Json::Value::Members members = tags.getMemberNames(); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2561 for (size_t i = 0; i < members.size(); i++) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2562 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2563 const Json::Value& tag = tags[members[i]]; |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2564 if (tag.type() != Json::objectValue || |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2565 tag["Type"].type() != Json::stringValue || |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2566 tag["Type"].asString() != "String") |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2567 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2568 tags.removeMember(members[i]); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2569 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2570 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2571 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2572 if (isFirst) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2573 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2574 // This is the first instance, keep its tags as such |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2575 shared = tags; |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2576 isFirst = false; |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2577 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2578 else |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2579 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2580 // Loop over all the members of the shared tags extracted so |
|
1fbe89dc18b5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2581 // far. If the value of one of these tags does not match its |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2582 // value in the current instance, remove it. |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2583 members = shared.getMemberNames(); |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2584 for (size_t i = 0; i < members.size(); i++) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2585 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2586 if (!tags.isMember(members[i]) || |
|
abac5c83134f
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2587 tags[members[i]]["Value"].asString() != shared[members[i]]["Value"].asString()) |
|
958
1fbe89dc18b5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2588 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2589 shared.removeMember(members[i]); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2590 } |
|
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extraction of the shared tags
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parents:
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diff
changeset
|
2591 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2592 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2593 } |
|
1fbe89dc18b5
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|
2594 |
|
960
abac5c83134f
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diff
changeset
|
2595 return true; |
|
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diff
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|
2596 } |
|
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diff
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|
2597 |
|
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diff
changeset
|
2598 |
| 974 | 2599 static void GetSharedTags(RestApiGetCall& call) |
|
960
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|
2600 { |
|
4416
0b27841950d5
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diff
changeset
|
2601 if (call.IsDocumentation()) |
|
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diff
changeset
|
2602 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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4694
diff
changeset
|
2603 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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4694
diff
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|
2604 |
|
4416
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changeset
|
2605 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
|
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|
2606 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
0b27841950d5
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|
2607 call.GetDocumentation() |
|
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changeset
|
2608 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
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|
2609 .SetSummary("Get shared tags") |
|
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changeset
|
2610 .SetDescription("Extract the DICOM tags whose value is constant across all the child instances of " |
|
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diff
changeset
|
2611 "the DICOM " + r + " whose Orthanc identifier is provided in the URL") |
|
0b27841950d5
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|
2612 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
0b27841950d5
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|
2613 .AddAnswerType(MimeType_Json, "JSON object containing the values of the DICOM tags") |
|
0b27841950d5
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diff
changeset
|
2614 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/shared-tags", 5); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
2615 return; |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
2616 } |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
2617 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2618 ServerContext& context = OrthancRestApi::GetContext(call); |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2619 std::string publicId = call.GetUriComponent("id", ""); |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2620 |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2621 Json::Value sharedTags; |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2622 if (ExtractSharedTags(sharedTags, context, publicId)) |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2623 { |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2624 // Success: Send the value of the shared tags |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2625 AnswerDicomAsJson(call, sharedTags, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2626 } |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2627 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2628 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2629 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2630 template <enum ResourceType resourceType, |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2631 enum DicomModule module> |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2632 static void GetModule(RestApiGetCall& call) |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2633 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2634 if (call.IsDocumentation()) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2635 { |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2636 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2637 std::string m; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2638 switch (module) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2639 { |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2640 case DicomModule_Patient: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2641 m = "patient"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2642 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2643 case DicomModule_Study: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2644 m = "study"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2645 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2646 case DicomModule_Series: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2647 m = "series"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2648 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2649 case DicomModule_Instance: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2650 m = "instance"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2651 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2652 default: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2653 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2654 } |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2655 |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2656 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2657 |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2658 call.GetDocumentation() |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2659 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2660 .SetSummary("Get " + m + " module" + std::string(resource == m ? "" : " of " + resource)) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2661 .SetDescription("Get the " + m + " module of the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2662 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
2663 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2664 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2665 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2666 .SetHttpGetSample(GetDocumentationSampleResource(resourceType) + "/" + (*call.GetFullUri().rbegin()), true); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2667 return; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2668 } |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2669 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2670 if (!((resourceType == ResourceType_Patient && module == DicomModule_Patient) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2671 (resourceType == ResourceType_Study && module == DicomModule_Patient) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2672 (resourceType == ResourceType_Study && module == DicomModule_Study) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2673 (resourceType == ResourceType_Series && module == DicomModule_Series) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2674 (resourceType == ResourceType_Instance && module == DicomModule_Instance) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2675 (resourceType == ResourceType_Instance && module == DicomModule_Image))) |
|
1054
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2676 { |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2677 throw OrthancException(ErrorCode_NotImplemented); |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2678 } |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2679 |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2680 ServerContext& context = OrthancRestApi::GetContext(call); |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2681 std::string publicId = call.GetUriComponent("id", ""); |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2682 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2683 std::set<DicomTag> ignoreTagLength; |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
2684 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2685 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2686 typedef std::set<DicomTag> ModuleTags; |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2687 ModuleTags moduleTags; |
| 1368 | 2688 DicomTag::AddTagsForModule(moduleTags, module); |
|
963
81134ea872ff
retrieve values of modules
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diff
changeset
|
2689 |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2690 Json::Value tags; |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2691 |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2692 if (resourceType != ResourceType_Instance) |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2693 { |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2694 // Retrieve all the instances of this patient/study/series |
|
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parents:
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diff
changeset
|
2695 typedef std::list<std::string> Instances; |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2696 Instances instances; |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2697 context.GetIndex().GetChildInstances(instances, publicId); |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2698 |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2699 if (instances.empty()) |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2700 { |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2701 return; // Error: No instance (should never happen) |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2702 } |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2703 |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2704 // Select one child instance |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2705 publicId = instances.front(); |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2706 } |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2707 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2708 context.ReadDicomAsJson(tags, publicId, ignoreTagLength); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2709 |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2710 // Filter the tags of the instance according to the module |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2711 Json::Value result = Json::objectValue; |
| 1303 | 2712 for (ModuleTags::const_iterator tag = moduleTags.begin(); tag != moduleTags.end(); ++tag) |
|
963
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2713 { |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2714 std::string s = tag->Format(); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
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960
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|
2715 if (tags.isMember(s)) |
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diff
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|
2716 { |
|
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diff
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|
2717 result[s] = tags[s]; |
|
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diff
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|
2718 } |
|
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|
2719 } |
|
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diff
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|
2720 |
|
4697
569d9ef165b1
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|
2721 AnswerDicomAsJson(call, result, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
963
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|
2722 } |
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|
2723 |
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2724 |
| 1722 | 2725 namespace |
| 2726 { | |
| 2727 typedef std::list< std::pair<ResourceType, std::string> > LookupResults; | |
| 2728 } | |
| 2729 | |
| 2730 | |
| 2731 static void AccumulateLookupResults(LookupResults& result, | |
|
1718
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|
2732 ServerIndex& index, |
|
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|
2733 const DicomTag& tag, |
|
1719
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|
2734 const std::string& value, |
|
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|
2735 ResourceType level) |
|
1718
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|
2736 { |
|
3034
54e422fe31ce
moving LookupResource to graveyard
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diff
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|
2737 std::vector<std::string> tmp; |
|
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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|
2738 index.LookupIdentifierExact(tmp, level, tag, value); |
|
1719
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2739 |
|
3034
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|
2740 for (size_t i = 0; i < tmp.size(); i++) |
|
1719
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|
2741 { |
|
3034
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diff
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|
2742 result.push_back(std::make_pair(level, tmp[i])); |
|
1719
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|
2743 } |
|
1718
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|
2744 } |
|
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2745 |
|
2b812969e136
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|
2746 |
|
1139
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|
2747 static void Lookup(RestApiPostCall& call) |
|
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|
2748 { |
| 4422 | 2749 if (call.IsDocumentation()) |
| 2750 { | |
| 2751 call.GetDocumentation() | |
| 2752 .SetTag("System") | |
| 2753 .SetSummary("Look for DICOM identifiers") | |
| 2754 .SetDescription("This URI can be used to convert one DICOM identifier to a list of matching Orthanc resources") | |
| 2755 .AddRequestType(MimeType_PlainText, "The DICOM identifier of interest (i.e. the value of `PatientID`, " | |
| 2756 "`StudyInstanceUID`, `SeriesInstanceUID`, or `SOPInstanceUID`)") | |
| 2757 .AddAnswerType(MimeType_Json, "JSON array containing a list of matching Orthanc resources, each item in the " | |
| 2758 "list corresponding to a JSON object with the fields `Type`, `ID` and `Path` identifying one " | |
| 2759 "DICOM resource that is stored by Orthanc"); | |
| 2760 return; | |
| 2761 } | |
| 2762 | |
|
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diff
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|
2763 std::string tag; |
|
8dc80ba768aa
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|
2764 call.BodyToString(tag); |
|
1139
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|
2765 |
| 1722 | 2766 LookupResults resources; |
|
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|
2767 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
1719
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|
2768 AccumulateLookupResults(resources, index, DICOM_TAG_PATIENT_ID, tag, ResourceType_Patient); |
|
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|
2769 AccumulateLookupResults(resources, index, DICOM_TAG_STUDY_INSTANCE_UID, tag, ResourceType_Study); |
|
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|
2770 AccumulateLookupResults(resources, index, DICOM_TAG_SERIES_INSTANCE_UID, tag, ResourceType_Series); |
|
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|
2771 AccumulateLookupResults(resources, index, DICOM_TAG_SOP_INSTANCE_UID, tag, ResourceType_Instance); |
|
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changeset
|
2772 |
|
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changeset
|
2773 Json::Value result = Json::arrayValue; |
| 1722 | 2774 for (LookupResults::const_iterator |
|
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|
2775 it = resources.begin(); it != resources.end(); ++it) |
|
1139
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|
2776 { |
|
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|
2777 ResourceType type = it->first; |
|
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|
2778 const std::string& id = it->second; |
|
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|
2779 |
|
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|
2780 Json::Value item = Json::objectValue; |
|
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|
2781 item["Type"] = EnumerationToString(type); |
|
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|
2782 item["ID"] = id; |
|
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|
2783 item["Path"] = GetBasePath(type, id); |
|
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|
2784 |
|
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changeset
|
2785 result.append(item); |
|
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|
2786 } |
|
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|
2787 |
|
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|
2788 call.GetOutput().AnswerJson(result); |
|
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|
2789 } |
|
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|
2790 |
|
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|
2791 |
|
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2792 namespace |
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|
2793 { |
|
3021
2cbafb5d5a62
renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
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diff
changeset
|
2794 class FindVisitor : public ServerContext::ILookupVisitor |
|
3001
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2795 { |
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|
2796 private: |
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|
2797 bool isComplete_; |
|
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|
2798 std::list<std::string> resources_; |
|
4697
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changeset
|
2799 DicomToJsonFormat format_; |
|
3001
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|
2800 |
|
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changeset
|
2801 public: |
| 4716 | 2802 explicit FindVisitor(DicomToJsonFormat format) : |
|
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|
2803 isComplete_(false), |
|
569d9ef165b1
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|
2804 format_(format) |
|
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2805 { |
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|
2806 } |
| 4205 | 2807 |
| 2808 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
|
3012
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2809 { |
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2810 return false; // (*) |
|
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2811 } |
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2812 |
| 4205 | 2813 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
|
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2814 { |
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2815 isComplete_ = true; // Unused information as of Orthanc 1.5.0 |
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2816 } |
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2817 |
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|
2818 virtual void Visit(const std::string& publicId, |
|
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|
2819 const std::string& instanceId /* unused */, |
|
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|
2820 const DicomMap& mainDicomTags /* unused */, |
| 4205 | 2821 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE |
|
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2822 { |
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|
2823 resources_.push_back(publicId); |
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2824 } |
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2825 |
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2826 void Answer(RestApiOutput& output, |
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2827 ServerIndex& index, |
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2828 ResourceType level, |
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|
2829 bool expand) const |
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2830 { |
|
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|
2831 AnswerListOfResources(output, index, resources_, level, expand, format_); |
|
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2832 } |
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2833 }; |
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2834 } |
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2835 |
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2836 |
| 1354 | 2837 static void Find(RestApiPostCall& call) |
| 2838 { | |
| 2998 | 2839 static const char* const KEY_CASE_SENSITIVE = "CaseSensitive"; |
| 2840 static const char* const KEY_EXPAND = "Expand"; | |
| 2841 static const char* const KEY_LEVEL = "Level"; | |
| 2842 static const char* const KEY_LIMIT = "Limit"; | |
| 2843 static const char* const KEY_QUERY = "Query"; | |
| 2844 static const char* const KEY_SINCE = "Since"; | |
| 2845 | |
| 4421 | 2846 if (call.IsDocumentation()) |
| 2847 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2848 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2849 |
| 4421 | 2850 call.GetDocumentation() |
| 2851 .SetTag("System") | |
| 2852 .SetSummary("Look for local resources") | |
| 2853 .SetDescription("This URI can be used to perform a search on the content of the local Orthanc server, " | |
| 2854 "in a way that is similar to querying remote DICOM modalities using C-FIND SCU: " | |
| 2855 "https://book.orthanc-server.com/users/rest.html#performing-finds-within-orthanc") | |
| 2856 .SetRequestField(KEY_CASE_SENSITIVE, RestApiCallDocumentation::Type_Boolean, | |
| 2857 "Enable case-sensitive search for PN value representations (defaults to configuration option `CaseSensitivePN`)", false) | |
| 2858 .SetRequestField(KEY_EXPAND, RestApiCallDocumentation::Type_Boolean, | |
| 2859 "Also retrieve the content of the matching resources, not only their Orthanc identifiers", false) | |
| 2860 .SetRequestField(KEY_LEVEL, RestApiCallDocumentation::Type_String, | |
| 2861 "Level of the query (`Patient`, `Study`, `Series` or `Instance`)", true) | |
| 2862 .SetRequestField(KEY_LIMIT, RestApiCallDocumentation::Type_Number, | |
| 2863 "Limit the number of reported resources", false) | |
| 2864 .SetRequestField(KEY_SINCE, RestApiCallDocumentation::Type_Number, | |
| 2865 "Show only the resources since the provided index (in conjunction with `Limit`)", false) | |
| 2866 .SetRequestField(KEY_QUERY, RestApiCallDocumentation::Type_JsonObject, | |
| 2867 "Associative array containing the filter on the values of the DICOM tags", true) | |
| 2868 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " | |
| 2869 "about the reported resources (if `Expand` argument is `true`)"); | |
| 2870 return; | |
| 2871 } | |
| 2872 | |
| 1358 | 2873 ServerContext& context = OrthancRestApi::GetContext(call); |
| 1354 | 2874 |
| 2875 Json::Value request; | |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2876 if (!call.ParseJsonRequest(request) || |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2877 request.type() != Json::objectValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2878 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2879 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2880 "The body must contain a JSON object"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2881 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2882 else if (!request.isMember(KEY_LEVEL) || |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2883 request[KEY_LEVEL].type() != Json::stringValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2884 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2885 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2886 "Field \"" + std::string(KEY_LEVEL) + "\" is missing, or should be a string"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2887 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2888 else if (!request.isMember(KEY_QUERY) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2889 request[KEY_QUERY].type() != Json::objectValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2890 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2891 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2892 "Field \"" + std::string(KEY_QUERY) + "\" is missing, or should be a JSON object"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2893 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2894 else if (request.isMember(KEY_CASE_SENSITIVE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2895 request[KEY_CASE_SENSITIVE].type() != Json::booleanValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2896 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2897 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2898 "Field \"" + std::string(KEY_CASE_SENSITIVE) + "\" should be a Boolean"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2899 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2900 else if (request.isMember(KEY_LIMIT) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2901 request[KEY_LIMIT].type() != Json::intValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2902 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2903 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2904 "Field \"" + std::string(KEY_LIMIT) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2905 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2906 else if (request.isMember(KEY_SINCE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2907 request[KEY_SINCE].type() != Json::intValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2908 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2909 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2910 "Field \"" + std::string(KEY_SINCE) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2911 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2912 else |
| 1354 | 2913 { |
| 2914 bool expand = false; | |
| 2998 | 2915 if (request.isMember(KEY_EXPAND)) |
| 1354 | 2916 { |
| 2998 | 2917 expand = request[KEY_EXPAND].asBool(); |
| 1354 | 2918 } |
| 2919 | |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2920 bool caseSensitive = false; |
| 2998 | 2921 if (request.isMember(KEY_CASE_SENSITIVE)) |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2922 { |
| 2998 | 2923 caseSensitive = request[KEY_CASE_SENSITIVE].asBool(); |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2924 } |
|
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2925 |
| 1758 | 2926 size_t limit = 0; |
| 2998 | 2927 if (request.isMember(KEY_LIMIT)) |
| 1758 | 2928 { |
| 2998 | 2929 int tmp = request[KEY_LIMIT].asInt(); |
| 1847 | 2930 if (tmp < 0) |
| 1758 | 2931 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2932 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2933 "Field \"" + std::string(KEY_LIMIT) + "\" should be a positive integer"); |
| 1758 | 2934 } |
| 1847 | 2935 |
| 2936 limit = static_cast<size_t>(tmp); | |
| 1758 | 2937 } |
| 2938 | |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2939 size_t since = 0; |
| 2998 | 2940 if (request.isMember(KEY_SINCE)) |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2941 { |
| 2998 | 2942 int tmp = request[KEY_SINCE].asInt(); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2943 if (tmp < 0) |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2944 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2945 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2946 "Field \"" + std::string(KEY_SINCE) + "\" should be a positive integer"); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2947 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2948 |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2949 since = static_cast<size_t>(tmp); |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2950 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2951 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2952 ResourceType level = StringToResourceType(request[KEY_LEVEL].asCString()); |
| 1360 | 2953 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2954 DatabaseLookup query; |
| 1358 | 2955 |
| 2998 | 2956 Json::Value::Members members = request[KEY_QUERY].getMemberNames(); |
| 1354 | 2957 for (size_t i = 0; i < members.size(); i++) |
| 2958 { | |
| 2998 | 2959 if (request[KEY_QUERY][members[i]].type() != Json::stringValue) |
| 1354 | 2960 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2961 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2962 "Tag \"" + members[i] + "\" should be associated with a string"); |
| 1354 | 2963 } |
| 2964 | |
|
3163
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2965 const std::string value = request[KEY_QUERY][members[i]].asString(); |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2966 |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2967 if (!value.empty()) |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2968 { |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2969 // An empty string corresponds to an universal constraint, |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2970 // so we ignore it. This mimics the behavior of class |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2971 // "OrthancFindRequestHandler" |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2972 query.AddRestConstraint(FromDcmtkBridge::ParseTag(members[i]), |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2973 value, caseSensitive, true); |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2974 } |
|
1361
94ffb597d297
refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1360
diff
changeset
|
2975 } |
| 2876 | 2976 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2977 FindVisitor visitor(OrthancRestApi::GetDicomFormat(request, DicomToJsonFormat_Human)); |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2978 context.Apply(visitor, query, level, since, limit); |
|
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2979 visitor.Answer(call.GetOutput(), context.GetIndex(), level, expand); |
| 1354 | 2980 } |
| 2981 } | |
| 2982 | |
| 2983 | |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2984 template <enum ResourceType start, |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2985 enum ResourceType end> |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2986 static void GetChildResources(RestApiGetCall& call) |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2987 { |
| 4415 | 2988 if (call.IsDocumentation()) |
| 2989 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2990 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2991 |
| 4415 | 2992 const std::string children = GetResourceTypeText(end, true /* plural */, false /* lower case */); |
| 2993 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 2994 call.GetDocumentation() | |
| 2995 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 2996 .SetSummary("Get child " + children) | |
| 2997 .SetDescription("Get detailed information about the child " + children + " of the DICOM " + | |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
2998 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 2999 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 3000 .AddAnswerType(MimeType_Json, "JSON array containing information about the child DICOM " + children) | |
| 3001 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + children, 5); | |
| 3002 return; | |
| 3003 } | |
| 3004 | |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3005 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3006 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3007 std::list<std::string> a, b, c; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3008 a.push_back(call.GetUriComponent("id", "")); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3009 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3010 ResourceType type = start; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3011 while (type != end) |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3012 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3013 b.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3014 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3015 for (std::list<std::string>::const_iterator |
| 1303 | 3016 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3017 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3018 index.GetChildren(c, *it); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3019 b.splice(b.begin(), c); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3020 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3021 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
3022 type = GetChildResourceType(type); |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3023 |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3024 a.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3025 a.splice(a.begin(), b); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3026 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3027 |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3028 Json::Value result = Json::arrayValue; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3029 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3030 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3031 |
|
1140
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
3032 for (std::list<std::string>::const_iterator |
| 1303 | 3033 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3034 { |
| 4554 | 3035 Json::Value resource; |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3036 if (OrthancRestApi::GetIndex(call).ExpandResource(resource, *it, end, format)) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3037 { |
| 4554 | 3038 result.append(resource); |
|
1140
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3039 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3040 } |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3041 |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3042 call.GetOutput().AnswerJson(result); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3043 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3044 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3045 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3046 static void GetChildInstancesTags(RestApiGetCall& call) |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3047 { |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
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4415
diff
changeset
|
3048 if (call.IsDocumentation()) |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3049 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3050 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3051 |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3052 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3053 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3054 call.GetDocumentation() |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3055 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3056 .SetSummary("Get tags of instances") |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3057 .SetDescription("Get the tags of all the child instances of the DICOM " + r + |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3058 " whose Orthanc identifier is provided in the URL") |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3059 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
3060 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4416
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3061 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3062 .AddAnswerType(MimeType_Json, "JSON object associating the Orthanc identifiers of the instances, with the values of their DICOM tags") |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3063 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/instances-tags", 5); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3064 return; |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3065 } |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3066 |
|
1166
a921e3b5e763
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1146
diff
changeset
|
3067 ServerContext& context = OrthancRestApi::GetContext(call); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3068 std::string publicId = call.GetUriComponent("id", ""); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3069 DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full); |
|
1166
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Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3070 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3071 std::set<DicomTag> ignoreTagLength; |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
3072 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3073 |
|
1166
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3074 // Retrieve all the instances of this patient/study/series |
|
a921e3b5e763
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Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
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|
3075 typedef std::list<std::string> Instances; |
|
a921e3b5e763
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1146
diff
changeset
|
3076 Instances instances; |
|
a921e3b5e763
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diff
changeset
|
3077 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3078 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
a921e3b5e763
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3079 |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3080 Json::Value result = Json::objectValue; |
|
1166
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3081 |
|
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1146
diff
changeset
|
3082 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 3083 it != instances.end(); ++it) |
|
1166
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diff
changeset
|
3084 { |
|
a921e3b5e763
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1146
diff
changeset
|
3085 Json::Value full; |
|
2409
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3086 context.ReadDicomAsJson(full, *it, ignoreTagLength); |
|
1166
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diff
changeset
|
3087 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
3088 if (format != DicomToJsonFormat_Full) |
|
1166
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diff
changeset
|
3089 { |
|
a921e3b5e763
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parents:
1146
diff
changeset
|
3090 Json::Value simplified; |
|
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4045
diff
changeset
|
3091 Toolbox::SimplifyDicomAsJson(simplified, full, format); |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
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1172
diff
changeset
|
3092 result[*it] = simplified; |
|
1166
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|
3093 } |
|
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diff
changeset
|
3094 else |
|
a921e3b5e763
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parents:
1146
diff
changeset
|
3095 { |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3096 result[*it] = full; |
|
1166
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parents:
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diff
changeset
|
3097 } |
|
a921e3b5e763
bulk tags retrieval
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parents:
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diff
changeset
|
3098 } |
|
a921e3b5e763
bulk tags retrieval
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diff
changeset
|
3099 |
|
a921e3b5e763
bulk tags retrieval
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diff
changeset
|
3100 call.GetOutput().AnswerJson(result); |
|
a921e3b5e763
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diff
changeset
|
3101 } |
|
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diff
changeset
|
3102 |
|
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diff
changeset
|
3103 |
|
1140
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3104 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3105 template <enum ResourceType start, |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
3106 enum ResourceType end> |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3107 static void GetParentResource(RestApiGetCall& call) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3108 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3109 assert(start > end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3110 |
| 4415 | 3111 if (call.IsDocumentation()) |
| 3112 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3113 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3114 |
| 4415 | 3115 const std::string parent = GetResourceTypeText(end, false /* plural */, false /* lower case */); |
| 3116 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 3117 call.GetDocumentation() | |
| 3118 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 3119 .SetSummary("Get parent " + parent) | |
| 3120 .SetDescription("Get detailed information about the parent " + parent + " of the DICOM " + | |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3121 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 3122 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 3123 .AddAnswerType(MimeType_Json, "Information about the parent DICOM " + parent) | |
| 3124 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + parent, 10); | |
| 3125 return; | |
| 3126 } | |
| 3127 | |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3128 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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parents:
1276
diff
changeset
|
3129 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3130 std::string current = call.GetUriComponent("id", ""); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3131 ResourceType currentType = start; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3132 while (currentType > end) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3133 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3134 std::string parent; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3135 if (!index.LookupParent(parent, current)) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3136 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3137 // Error that could happen if the resource gets deleted by |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3138 // another concurrent call |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3139 return; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3140 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3141 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3142 current = parent; |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
3143 currentType = GetParentResourceType(currentType); |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3144 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3145 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3146 assert(currentType == end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3147 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3148 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3149 |
| 4554 | 3150 Json::Value resource; |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3151 if (OrthancRestApi::GetIndex(call).ExpandResource(resource, current, end, format)) |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3152 { |
| 4554 | 3153 call.GetOutput().AnswerJson(resource); |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3154 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3155 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3156 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3157 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3158 static void ExtractPdf(RestApiGetCall& call) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3159 { |
| 4407 | 3160 if (call.IsDocumentation()) |
| 3161 { | |
| 3162 call.GetDocumentation() | |
| 3163 .SetTag("Instances") | |
| 3164 .SetSummary("Get embedded PDF") | |
| 3165 .SetDescription("Get the PDF file that is embedded in one DICOM instance. " | |
| 3166 "If the DICOM instance doesn't contain the `EncapsulatedDocument` tag or if the " | |
| 3167 "`MIMETypeOfEncapsulatedDocument` tag doesn't correspond to the PDF type, a `404` HTTP error is raised.") | |
| 3168 .SetUriArgument("id", "Orthanc identifier of the instance interest") | |
| 3169 .AddAnswerType(MimeType_Pdf, "PDF file"); | |
| 3170 return; | |
| 3171 } | |
| 3172 | |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3173 const std::string id = call.GetUriComponent("id", ""); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3174 std::string pdf; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3175 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3176 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3177 if (locker.GetDicom().ExtractPdf(pdf)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3178 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3179 call.GetOutput().AnswerBuffer(pdf, MimeType_Pdf); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3180 return; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3181 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3182 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3183 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3184 |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3185 static void OrderSlices(RestApiGetCall& call) |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3186 { |
| 4421 | 3187 if (call.IsDocumentation()) |
| 3188 { | |
| 3189 call.GetDocumentation() | |
| 3190 .SetDeprecated() | |
| 3191 .SetTag("Series") | |
| 3192 .SetSummary("Order the slices") | |
| 3193 .SetDescription("Sort the instances and frames (slices) of the DICOM series whose Orthanc identifier is provided in the URL. " | |
| 3194 "This URI is essentially used by the Orthanc Web viewer and by the Osimis Web viewer.") | |
| 3195 .SetUriArgument("id", "Orthanc identifier of the series of interest") | |
| 3196 .SetAnswerField("Dicom", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 3197 "Ordered list of paths to DICOM instances") | |
| 3198 .SetAnswerField("Slices", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 3199 "Ordered list of paths to frames. It is recommended to use this field, as it is also valid " | |
| 3200 "in the case of multiframe images.") | |
| 3201 .SetAnswerField("SlicesShort", RestApiCallDocumentation::Type_JsonListOfObjects, | |
| 3202 "Same information as the `Slices` field, but in a compact form") | |
| 3203 .SetAnswerField("Type", RestApiCallDocumentation::Type_String, | |
| 3204 "Can be `Volume` (for 3D volumes) or `Sequence` (notably for cine images)") | |
| 3205 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/series/1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0/ordered-slices", 10); | |
| 3206 return; | |
| 3207 } | |
| 3208 | |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3209 const std::string id = call.GetUriComponent("id", ""); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3210 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3211 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3212 SliceOrdering ordering(index, id); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3213 |
|
1703
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3214 Json::Value result; |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3215 ordering.Format(result); |
|
b80e76dd1d56
ordered-slices continued
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parents:
1702
diff
changeset
|
3216 call.GetOutput().AnswerJson(result); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3217 } |
|
9980875edc7c
started work on SliceOrdering
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parents:
1701
diff
changeset
|
3218 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3219 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3220 static void GetInstanceHeader(RestApiGetCall& call) |
|
3ae2ff249675
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1826
diff
changeset
|
3221 { |
| 4404 | 3222 if (call.IsDocumentation()) |
| 3223 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3224 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
| 4404 | 3225 call.GetDocumentation() |
| 3226 .SetTag("Instances") | |
| 3227 .SetSummary("Get DICOM meta-header") | |
| 3228 .SetDescription("Get the DICOM tags in the meta-header of the DICOM instance. By default, the `full` format is used, which " | |
| 3229 "combines hexadecimal tags with human-readable description.") | |
| 3230 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 3231 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 3232 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/header", true); | |
| 3233 return; | |
| 3234 } | |
| 3235 | |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
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1826
diff
changeset
|
3236 ServerContext& context = OrthancRestApi::GetContext(call); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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diff
changeset
|
3237 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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diff
changeset
|
3238 std::string publicId = call.GetUriComponent("id", ""); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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diff
changeset
|
3239 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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1826
diff
changeset
|
3240 std::string dicomContent; |
|
4792
434843934307
Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
3241 context.ReadDicomForHeader(dicomContent, publicId); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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diff
changeset
|
3242 |
|
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3243 // TODO Consider using "DicomMap::ParseDicomMetaInformation()" to |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3244 // speed up things here |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
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parents:
2003
diff
changeset
|
3245 |
|
1831
3ae2ff249675
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diff
changeset
|
3246 ParsedDicomFile dicom(dicomContent); |
|
3ae2ff249675
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diff
changeset
|
3247 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
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1826
diff
changeset
|
3248 Json::Value header; |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
3249 OrthancConfiguration::DefaultDicomHeaderToJson(header, dicom); |
|
1831
3ae2ff249675
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1826
diff
changeset
|
3250 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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4694
diff
changeset
|
3251 AnswerDicomAsJson(call, header, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3252 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3253 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3254 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3255 static void InvalidateTags(RestApiPostCall& call) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3256 { |
| 4420 | 3257 if (call.IsDocumentation()) |
| 3258 { | |
| 3259 call.GetDocumentation() | |
| 3260 .SetTag("System") | |
| 3261 .SetSummary("Invalidate DICOM-as-JSON summaries") | |
| 3262 .SetDescription("Remove all the attachments of the type \"DICOM-as-JSON\" that are associated will all the " | |
| 3263 "DICOM instances stored in Orthanc. These summaries will be automatically re-created on the next access. " | |
| 3264 "This is notably useful after changes to the `Dictionary` configuration option. " | |
| 3265 "https://book.orthanc-server.com/faq/orthanc-storage.html#storage-area"); | |
| 3266 return; | |
| 3267 } | |
| 3268 | |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3269 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3270 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3271 // Loop over the instances, grouping them by parent studies so as |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3272 // to avoid large memory consumption |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3273 std::list<std::string> studies; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3274 index.GetAllUuids(studies, ResourceType_Study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3275 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3276 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3277 study = studies.begin(); study != studies.end(); ++study) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3278 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3279 std::list<std::string> instances; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3280 index.GetChildInstances(instances, *study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3281 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3282 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3283 instance = instances.begin(); instance != instances.end(); ++instance) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3284 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
3285 index.DeleteAttachment(*instance, FileContentType_DicomAsJson, |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
3286 false /* no revision checks */, -1 /* dummy */, "" /* dummy */); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3287 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3288 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3289 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3290 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3291 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3292 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3293 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3294 template <enum ResourceType type> |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3295 static void ReconstructResource(RestApiPostCall& call) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3296 { |
| 4420 | 3297 if (call.IsDocumentation()) |
| 3298 { | |
| 3299 const std::string resource = GetResourceTypeText(type, false /* plural */, false /* lower case */); | |
| 3300 call.GetDocumentation() | |
| 3301 .SetTag(GetResourceTypeText(type, true /* plural */, true /* upper case */)) | |
| 3302 .SetSummary("Reconstruct tags of " + resource) | |
| 3303 .SetDescription("Reconstruct the main DICOM tags of the " + resource + " whose Orthanc identifier is provided " | |
| 3304 "in the URL. This is useful if child studies/series/instances have inconsistent values for " | |
| 3305 "higher-level tags, in order to force Orthanc to use the value from the resource of interest. " | |
| 3306 "Beware that this is a time-consuming operation, as all the children DICOM instances will be " | |
| 3307 "parsed again, and the Orthanc index will be updated accordingly.") | |
| 3308 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); | |
| 3309 return; | |
| 3310 } | |
| 3311 | |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3312 ServerContext& context = OrthancRestApi::GetContext(call); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3313 ServerToolbox::ReconstructResource(context, call.GetUriComponent("id", "")); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3314 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3315 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3316 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3317 |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3318 static void ReconstructAllResources(RestApiPostCall& call) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3319 { |
| 4420 | 3320 if (call.IsDocumentation()) |
| 3321 { | |
| 3322 call.GetDocumentation() | |
| 3323 .SetTag("System") | |
| 3324 .SetSummary("Reconstruct all the index") | |
| 3325 .SetDescription("Reconstruct the index of all the tags of all the DICOM instances that are stored in Orthanc. " | |
| 3326 "This is notably useful after the deletion of resources whose children resources have inconsistent " | |
| 3327 "values with their sibling resources. Beware that this is a highly time-consuming operation, " | |
| 3328 "as all the DICOM instances will be parsed again, and as all the Orthanc index will be regenerated."); | |
| 3329 return; | |
| 3330 } | |
| 3331 | |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3332 ServerContext& context = OrthancRestApi::GetContext(call); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3333 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3334 std::list<std::string> studies; |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3335 context.GetIndex().GetAllUuids(studies, ResourceType_Study); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3336 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3337 for (std::list<std::string>::const_iterator |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3338 study = studies.begin(); study != studies.end(); ++study) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3339 { |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3340 ServerToolbox::ReconstructResource(context, *study); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3341 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3342 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3343 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3344 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3345 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3346 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3347 static void GetBulkChildren(std::set<std::string>& target, |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3348 ServerIndex& index, |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3349 const std::set<std::string>& source) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3350 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3351 target.clear(); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3352 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3353 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3354 it = source.begin(); it != source.end(); ++it) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3355 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3356 std::list<std::string> children; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3357 index.GetChildren(children, *it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3358 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3359 for (std::list<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3360 child = children.begin(); child != children.end(); ++child) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3361 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3362 target.insert(*child); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3363 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3364 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3365 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3366 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3367 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3368 static void AddMetadata(Json::Value& target, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3369 ServerIndex& index, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3370 const std::string& resource, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3371 ResourceType level) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3372 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3373 target = Json::objectValue; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3374 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3375 std::map<MetadataType, std::string> content; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3376 index.GetAllMetadata(content, resource, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3377 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3378 for (std::map<MetadataType, std::string>::const_iterator |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3379 it = content.begin(); it != content.end(); ++it) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3380 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3381 target[EnumerationToString(it->first)] = it->second; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3382 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3383 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3384 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3385 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3386 static void BulkContent(RestApiPostCall& call) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3387 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3388 static const char* const LEVEL = "Level"; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3389 static const char* const METADATA = "Metadata"; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3390 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3391 if (call.IsDocumentation()) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3392 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3393 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3394 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3395 call.GetDocumentation() |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3396 .SetTag("System") |
| 4879 | 3397 .SetSummary("Describe a set of resources") |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3398 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3399 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true) |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3400 .SetRequestField(LEVEL, RestApiCallDocumentation::Type_String, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3401 "This optional argument specifies the level of interest (can be `Patient`, `Study`, `Series` or " |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3402 "`Instance`). Orthanc will loop over the items inside `Resources`, and explorer upward or " |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3403 "downward in the DICOM hierarchy in order to find the level of interest.", false) |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3404 .SetRequestField(METADATA, RestApiCallDocumentation::Type_Boolean, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3405 "If set to `true` (default value), the metadata associated with the resources will also be retrieved.", false) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3406 .SetDescription("Get the content all the DICOM patients, studies, series or instances " |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3407 "whose identifiers are provided in the `Resources` field, in one single call."); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3408 return; |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3409 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3410 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3411 Json::Value request; |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3412 if (!call.ParseJsonRequest(request) || |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3413 request.type() != Json::objectValue) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3414 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3415 throw OrthancException(ErrorCode_BadRequest, |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3416 "The body must contain a JSON object"); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3417 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3418 else |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3419 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3420 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(request, DicomToJsonFormat_Human); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3421 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3422 bool metadata = true; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3423 if (request.isMember(METADATA)) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3424 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3425 metadata = SerializationToolbox::ReadBoolean(request, METADATA); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3426 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3427 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3428 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3429 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3430 Json::Value answer = Json::arrayValue; |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3431 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3432 if (request.isMember(LEVEL)) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3433 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3434 // Complex case: Need to explore the DICOM hierarchy |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3435 ResourceType level = StringToResourceType(SerializationToolbox::ReadString(request, LEVEL).c_str()); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3436 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3437 std::set<std::string> resources; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3438 SerializationToolbox::ReadSetOfStrings(resources, request, "Resources"); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3439 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3440 std::set<std::string> interest; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3441 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3442 assert(ResourceType_Patient < ResourceType_Study && |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3443 ResourceType_Study < ResourceType_Series && |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3444 ResourceType_Series < ResourceType_Instance); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3445 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3446 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3447 it = resources.begin(); it != resources.end(); ++it) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3448 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3449 ResourceType type; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3450 if (index.LookupResourceType(type, *it)) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3451 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3452 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3453 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3454 // This resource is already from the level of interest |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3455 interest.insert(*it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3456 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3457 else if (type < level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3458 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3459 // Need to explore children |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3460 std::set<std::string> current; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3461 current.insert(*it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3462 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3463 for (;;) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3464 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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4698
diff
changeset
|
3465 std::set<std::string> children; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3466 GetBulkChildren(children, index, current); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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4698
diff
changeset
|
3467 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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4698
diff
changeset
|
3468 type = GetChildResourceType(type); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3469 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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4698
diff
changeset
|
3470 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3471 for (std::set<std::string>::const_iterator |
| 4716 | 3472 it2 = children.begin(); it2 != children.end(); ++it2) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3473 { |
| 4716 | 3474 interest.insert(*it2); |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3475 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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4698
diff
changeset
|
3476 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
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4698
diff
changeset
|
3477 break; // done |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3478 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
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4698
diff
changeset
|
3479 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3480 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3481 current.swap(children); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3482 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3483 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3484 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3485 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3486 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3487 // Need to explore parents |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3488 std::string current = *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3489 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3490 for (;;) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3491 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3492 std::string parent; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3493 if (index.LookupParent(parent, current)) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3494 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3495 type = GetParentResourceType(type); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3496 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3497 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3498 interest.insert(parent); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3499 break; // done |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3500 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3501 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3502 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3503 current = parent; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3504 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3505 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3506 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3507 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3508 break; // The resource has been deleted during the exploration |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3509 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3510 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3511 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3512 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3513 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3514 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3515 CLOG(INFO, HTTP) << "Unknown resource during a bulk content retrieval: " << *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3516 } |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3517 } |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3518 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3519 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3520 it = interest.begin(); it != interest.end(); ++it) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3521 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3522 Json::Value item; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3523 if (index.ExpandResource(item, *it, level, format)) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3524 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3525 if (metadata) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3526 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3527 AddMetadata(item[METADATA], index, *it, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3528 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3529 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3530 answer.append(item); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3531 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3532 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3533 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3534 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3535 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3536 // Simple case: We return the queried resources as such |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3537 std::list<std::string> resources; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3538 SerializationToolbox::ReadListOfStrings(resources, request, "Resources"); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3539 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3540 for (std::list<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3541 it = resources.begin(); it != resources.end(); ++it) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3542 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3543 ResourceType level; |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3544 Json::Value item; |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3545 if (index.LookupResourceType(level, *it) && |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3546 index.ExpandResource(item, *it, level, format)) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3547 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3548 if (metadata) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3549 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3550 AddMetadata(item[METADATA], index, *it, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3551 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3552 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3553 answer.append(item); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3554 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3555 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3556 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3557 CLOG(INFO, HTTP) << "Unknown resource during a bulk content retrieval: " << *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3558 } |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3559 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3560 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3561 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3562 call.GetOutput().AnswerJson(answer); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3563 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3564 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3565 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3566 |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3567 static void BulkDelete(RestApiPostCall& call) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3568 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3569 if (call.IsDocumentation()) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3570 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3571 call.GetDocumentation() |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3572 .SetTag("System") |
| 4879 | 3573 .SetSummary("Delete a set of resources") |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3574 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3575 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3576 .SetDescription("Delete all the DICOM patients, studies, series or instances " |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3577 "whose identifiers are provided in the `Resources` field."); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3578 return; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3579 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3580 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3581 ServerContext& context = OrthancRestApi::GetContext(call); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3582 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3583 Json::Value request; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3584 if (!call.ParseJsonRequest(request) || |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3585 request.type() != Json::objectValue) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3586 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3587 throw OrthancException(ErrorCode_BadRequest, |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3588 "The body must contain a JSON object"); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3589 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3590 else |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3591 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3592 std::set<std::string> resources; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3593 SerializationToolbox::ReadSetOfStrings(resources, request, "Resources"); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3594 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3595 for (std::set<std::string>::const_iterator |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3596 it = resources.begin(); it != resources.end(); ++it) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3597 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3598 ResourceType type; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3599 Json::Value remainingAncestor; // Unused |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3600 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3601 if (!context.GetIndex().LookupResourceType(type, *it) || |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3602 !context.DeleteResource(remainingAncestor, *it, type)) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3603 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3604 CLOG(INFO, HTTP) << "Unknown resource during a bulk deletion: " << *it; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3605 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3606 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3607 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3608 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3609 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3610 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3611 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3612 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3613 void OrthancRestApi::RegisterResources() |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3614 { |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3615 Register("/instances", ListResources<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3616 Register("/patients", ListResources<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3617 Register("/series", ListResources<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3618 Register("/studies", ListResources<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3619 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3620 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3621 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3622 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3623 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3624 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3625 Register("/series/{id}", GetSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3626 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3627 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3628 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3629 Register("/instances/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3630 Register("/patients/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3631 Register("/studies/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3632 Register("/series/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3633 |
|
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3634 Register("/patients/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3635 Register("/series/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3636 Register("/studies/{id}/shared-tags", GetSharedTags); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
3637 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3638 Register("/instances/{id}/module", GetModule<ResourceType_Instance, DicomModule_Instance>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3639 Register("/patients/{id}/module", GetModule<ResourceType_Patient, DicomModule_Patient>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3640 Register("/series/{id}/module", GetModule<ResourceType_Series, DicomModule_Series>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3641 Register("/studies/{id}/module", GetModule<ResourceType_Study, DicomModule_Study>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3642 Register("/studies/{id}/module-patient", GetModule<ResourceType_Study, DicomModule_Patient>); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
3643 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3644 Register("/instances/{id}/file", GetInstanceFile); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3645 Register("/instances/{id}/export", ExportInstanceFile); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3646 Register("/instances/{id}/tags", GetInstanceTags); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3647 Register("/instances/{id}/simplified-tags", GetInstanceSimplifiedTags); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3648 Register("/instances/{id}/frames", ListFrames); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3649 |
|
4424
83371ccdfe80
openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4422
diff
changeset
|
3650 Register("/instances/{id}/frames/{frame}", RestApi::AutoListChildren); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3651 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
3652 Register("/instances/{id}/frames/{frame}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3653 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3654 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3655 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
3656 Register("/instances/{id}/frames/{frame}/matlab", GetMatlabImage); |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
3657 Register("/instances/{id}/frames/{frame}/raw", GetRawFrame<false>); |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
3658 Register("/instances/{id}/frames/{frame}/raw.gz", GetRawFrame<true>); |
|
4834
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
3659 Register("/instances/{id}/frames/{frame}/numpy", GetNumpyFrame); // New in Orthanc 1.9.8 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3660 Register("/instances/{id}/pdf", ExtractPdf); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3661 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
3662 Register("/instances/{id}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3663 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3664 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3665 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
3666 Register("/instances/{id}/matlab", GetMatlabImage); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3667 Register("/instances/{id}/header", GetInstanceHeader); |
|
4834
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
3668 Register("/instances/{id}/numpy", GetNumpyInstance); // New in Orthanc 1.9.8 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3669 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3670 Register("/patients/{id}/protected", IsProtectedPatient); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3671 Register("/patients/{id}/protected", SetPatientProtection); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3672 |
| 4409 | 3673 std::vector<std::string> resourceTypes; |
| 3674 resourceTypes.push_back("patients"); | |
| 3675 resourceTypes.push_back("studies"); | |
| 3676 resourceTypes.push_back("series"); | |
| 3677 resourceTypes.push_back("instances"); | |
| 3678 | |
| 3679 for (size_t i = 0; i < resourceTypes.size(); i++) | |
| 3680 { | |
| 3681 Register("/" + resourceTypes[i] + "/{id}/metadata", ListMetadata); | |
| 3682 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", DeleteMetadata); | |
| 3683 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", GetMetadata); | |
| 3684 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", SetMetadata); | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3685 |
| 4409 | 3686 Register("/" + resourceTypes[i] + "/{id}/attachments", ListAttachments); |
| 3687 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", DeleteAttachment); | |
| 3688 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", GetAttachmentOperations); | |
| 3689 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", UploadAttachment); | |
| 3690 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compress", ChangeAttachmentCompression<CompressionType_ZlibWithSize>); | |
| 3691 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-data", GetAttachmentData<0>); | |
| 3692 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-md5", GetAttachmentCompressedMD5); | |
| 3693 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-size", GetAttachmentCompressedSize); | |
| 3694 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/data", GetAttachmentData<1>); | |
| 3695 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/is-compressed", IsAttachmentCompressed); | |
| 3696 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/md5", GetAttachmentMD5); | |
| 3697 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/size", GetAttachmentSize); | |
| 3698 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/uncompress", ChangeAttachmentCompression<CompressionType_None>); | |
| 3699 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/verify-md5", VerifyAttachment); | |
| 3700 } | |
| 782 | 3701 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3702 Register("/tools/invalidate-tags", InvalidateTags); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3703 Register("/tools/lookup", Lookup); |
| 1354 | 3704 Register("/tools/find", Find); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3705 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3706 Register("/patients/{id}/studies", GetChildResources<ResourceType_Patient, ResourceType_Study>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3707 Register("/patients/{id}/series", GetChildResources<ResourceType_Patient, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3708 Register("/patients/{id}/instances", GetChildResources<ResourceType_Patient, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3709 Register("/studies/{id}/series", GetChildResources<ResourceType_Study, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3710 Register("/studies/{id}/instances", GetChildResources<ResourceType_Study, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3711 Register("/series/{id}/instances", GetChildResources<ResourceType_Series, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3712 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3713 Register("/studies/{id}/patient", GetParentResource<ResourceType_Study, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3714 Register("/series/{id}/patient", GetParentResource<ResourceType_Series, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3715 Register("/series/{id}/study", GetParentResource<ResourceType_Series, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3716 Register("/instances/{id}/patient", GetParentResource<ResourceType_Instance, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3717 Register("/instances/{id}/study", GetParentResource<ResourceType_Instance, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3718 Register("/instances/{id}/series", GetParentResource<ResourceType_Instance, ResourceType_Series>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3719 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3720 Register("/patients/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3721 Register("/studies/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3722 Register("/series/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3723 |
| 782 | 3724 Register("/instances/{id}/content/*", GetRawContent); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3725 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3726 Register("/series/{id}/ordered-slices", OrderSlices); |
|
4834
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
3727 Register("/series/{id}/numpy", GetNumpySeries); // New in Orthanc 1.9.8 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3728 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3729 Register("/patients/{id}/reconstruct", ReconstructResource<ResourceType_Patient>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3730 Register("/studies/{id}/reconstruct", ReconstructResource<ResourceType_Study>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3731 Register("/series/{id}/reconstruct", ReconstructResource<ResourceType_Series>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3732 Register("/instances/{id}/reconstruct", ReconstructResource<ResourceType_Instance>); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3733 Register("/tools/reconstruct", ReconstructAllResources); |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3734 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3735 Register("/tools/bulk-content", BulkContent); |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3736 Register("/tools/bulk-delete", BulkDelete); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3737 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3738 } |