Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancRestApi/OrthancRestResources.cpp @ 4623:95ffe3b6ef7c db-changes
handling of revisions for metadata
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 16 Apr 2021 17:13:03 +0200 |
parents | bec74e29f86b |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
4045 | 37 #include "../../../OrthancFramework/Sources/Compression/GzipCompressor.h" |
38 #include "../../../OrthancFramework/Sources/DicomFormat/DicomImageInformation.h" | |
39 #include "../../../OrthancFramework/Sources/DicomParsing/DicomWebJsonVisitor.h" | |
40 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
41 #include "../../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" | |
42 #include "../../../OrthancFramework/Sources/HttpServer/HttpContentNegociation.h" | |
43 #include "../../../OrthancFramework/Sources/Images/Image.h" | |
44 #include "../../../OrthancFramework/Sources/Images/ImageProcessing.h" | |
45 #include "../../../OrthancFramework/Sources/Logging.h" | |
46 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h" | |
47 | |
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48 #include "../OrthancConfiguration.h" |
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49 #include "../Search/DatabaseLookup.h" |
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50 #include "../ServerContext.h" |
2131 | 51 #include "../ServerToolbox.h" |
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52 #include "../SliceOrdering.h" |
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53 |
3687 | 54 // This "include" is mandatory for Release builds using Linux Standard Base |
55 #include <boost/math/special_functions/round.hpp> | |
56 | |
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57 |
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58 /** |
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59 * This semaphore is used to limit the number of concurrent HTTP |
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60 * requests on CPU-intensive routes of the REST API, in order to |
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61 * prevent exhaustion of resources (new in Orthanc 1.7.0). |
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62 **/ |
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63 static Orthanc::Semaphore throttlingSemaphore_(4); // TODO => PARAMETER? |
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64 |
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65 |
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66 static const std::string CHECK_REVISIONS = "CheckRevisions"; |
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67 |
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68 |
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69 namespace Orthanc |
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70 { |
4415 | 71 static std::string GetDocumentationSampleResource(ResourceType type) |
72 { | |
73 switch (type) | |
74 { | |
75 case Orthanc::ResourceType_Instance: | |
76 return "https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2"; | |
77 break; | |
78 | |
79 case Orthanc::ResourceType_Series: | |
80 return "https://demo.orthanc-server.com/series/37836232-d13a2350-fa1dedc5-962b31aa-010f8e52"; | |
81 break; | |
82 | |
83 case Orthanc::ResourceType_Study: | |
84 return "https://demo.orthanc-server.com/studies/27f7126f-4f66fb14-03f4081b-f9341db2-53925988"; | |
85 break; | |
86 | |
87 case Orthanc::ResourceType_Patient: | |
88 return "https://demo.orthanc-server.com/patients/46e6332c-677825b6-202fcf7c-f787bc5f-7b07c382"; | |
89 break; | |
90 | |
91 default: | |
92 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
93 } | |
94 } | |
95 | |
96 | |
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97 static void AnswerDicomAsJson(RestApiCall& call, |
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98 const Json::Value& dicom, |
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99 DicomToJsonFormat mode) |
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100 { |
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101 if (mode != DicomToJsonFormat_Full) |
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102 { |
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103 Json::Value simplified; |
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104 Toolbox::SimplifyDicomAsJson(simplified, dicom, mode); |
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105 call.GetOutput().AnswerJson(simplified); |
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106 } |
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107 else |
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108 { |
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109 call.GetOutput().AnswerJson(dicom); |
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110 } |
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111 } |
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112 |
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113 |
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114 static DicomToJsonFormat GetDicomFormat(const RestApiGetCall& call) |
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115 { |
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116 if (call.HasArgument("simplify")) |
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117 { |
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118 return DicomToJsonFormat_Human; |
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119 } |
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120 else if (call.HasArgument("short")) |
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121 { |
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122 return DicomToJsonFormat_Short; |
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123 } |
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124 else |
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125 { |
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126 return DicomToJsonFormat_Full; |
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127 } |
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128 } |
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129 |
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130 |
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131 static void AnswerDicomAsJson(RestApiGetCall& call, |
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132 const Json::Value& dicom) |
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133 { |
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134 AnswerDicomAsJson(call, dicom, GetDicomFormat(call)); |
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135 } |
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136 |
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137 |
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138 static void ParseSetOfTags(std::set<DicomTag>& target, |
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139 const RestApiGetCall& call, |
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140 const std::string& argument) |
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141 { |
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142 target.clear(); |
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143 |
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144 if (call.HasArgument(argument)) |
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145 { |
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146 std::vector<std::string> tags; |
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147 Toolbox::TokenizeString(tags, call.GetArgument(argument, ""), ','); |
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148 |
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149 for (size_t i = 0; i < tags.size(); i++) |
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150 { |
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151 target.insert(FromDcmtkBridge::ParseTag(tags[i])); |
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152 } |
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153 } |
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154 } |
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155 |
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156 |
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157 // List all the patients, studies, series or instances ---------------------- |
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158 |
1354 | 159 static void AnswerListOfResources(RestApiOutput& output, |
160 ServerIndex& index, | |
161 const std::list<std::string>& resources, | |
162 ResourceType level, | |
163 bool expand) | |
164 { | |
165 Json::Value answer = Json::arrayValue; | |
166 | |
167 for (std::list<std::string>::const_iterator | |
1384 | 168 resource = resources.begin(); resource != resources.end(); ++resource) |
1354 | 169 { |
170 if (expand) | |
171 { | |
4554 | 172 Json::Value expanded; |
173 if (index.ExpandResource(expanded, *resource, level)) | |
1354 | 174 { |
4554 | 175 answer.append(expanded); |
1354 | 176 } |
177 } | |
178 else | |
179 { | |
180 answer.append(*resource); | |
181 } | |
182 } | |
183 | |
184 output.AnswerJson(answer); | |
185 } | |
186 | |
187 | |
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188 template <enum ResourceType resourceType> |
974 | 189 static void ListResources(RestApiGetCall& call) |
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190 { |
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191 if (call.IsDocumentation()) |
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192 { |
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193 const std::string resources = GetResourceTypeText(resourceType, true /* plural */, false /* lower case */); |
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194 call.GetDocumentation() |
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195 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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196 .SetSummary("List the available " + resources) |
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197 .SetDescription("List the Orthanc identifiers of all the available DICOM " + resources) |
4403 | 198 .SetHttpGetArgument("limit", RestApiCallDocumentation::Type_Number, "Limit the number of results", false) |
199 .SetHttpGetArgument("since", RestApiCallDocumentation::Type_Number, "Show only the resources since the provided index", false) | |
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200 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, |
4403 | 201 "If present, retrieve detailed information about the individual " + resources, false) |
4404 | 202 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " |
203 "about the reported " + resources + " (if `expand` argument is provided)") | |
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204 .SetHttpGetSample("https://demo.orthanc-server.com/" + resources + "?since=0&limit=2", true); |
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205 return; |
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206 } |
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207 |
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208 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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209 |
1354 | 210 std::list<std::string> result; |
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211 |
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212 if (call.HasArgument("limit") || |
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213 call.HasArgument("since")) |
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214 { |
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215 if (!call.HasArgument("limit")) |
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216 { |
2955 | 217 throw OrthancException(ErrorCode_BadRequest, |
218 "Missing \"limit\" argument for GET request against: " + | |
219 call.FlattenUri()); | |
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220 } |
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221 |
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222 if (!call.HasArgument("since")) |
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223 { |
2955 | 224 throw OrthancException(ErrorCode_BadRequest, |
225 "Missing \"since\" argument for GET request against: " + | |
226 call.FlattenUri()); | |
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227 } |
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228 |
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229 size_t since = boost::lexical_cast<size_t>(call.GetArgument("since", "")); |
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230 size_t limit = boost::lexical_cast<size_t>(call.GetArgument("limit", "")); |
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231 index.GetAllUuids(result, resourceType, since, limit); |
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232 } |
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233 else |
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234 { |
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235 index.GetAllUuids(result, resourceType); |
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236 } |
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237 |
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238 |
1354 | 239 AnswerListOfResources(call.GetOutput(), index, result, resourceType, call.HasArgument("expand")); |
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240 } |
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241 |
4409 | 242 |
243 | |
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244 template <enum ResourceType resourceType> |
974 | 245 static void GetSingleResource(RestApiGetCall& call) |
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246 { |
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247 if (call.IsDocumentation()) |
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248 { |
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249 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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250 call.GetDocumentation() |
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251 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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252 .SetSummary("Get information about some " + resource) |
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253 .SetDescription("Get detailed information about the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
4404 | 254 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
4409 | 255 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
256 .SetHttpGetSample(GetDocumentationSampleResource(resourceType), true); | |
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257 return; |
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258 } |
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259 |
4554 | 260 Json::Value json; |
261 if (OrthancRestApi::GetIndex(call).ExpandResource(json, call.GetUriComponent("id", ""), resourceType)) | |
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262 { |
4554 | 263 call.GetOutput().AnswerJson(json); |
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264 } |
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265 } |
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266 |
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267 template <enum ResourceType resourceType> |
974 | 268 static void DeleteSingleResource(RestApiDeleteCall& call) |
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269 { |
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270 if (call.IsDocumentation()) |
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271 { |
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272 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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273 call.GetDocumentation() |
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274 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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275 .SetSummary("Delete some " + resource) |
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276 .SetDescription("Delete the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
4404 | 277 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); |
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278 return; |
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279 } |
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280 |
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281 Json::Value result; |
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282 if (OrthancRestApi::GetContext(call).DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) |
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283 { |
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284 call.GetOutput().AnswerJson(result); |
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285 } |
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286 } |
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287 |
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288 |
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289 // Get information about a single patient ----------------------------------- |
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290 |
974 | 291 static void IsProtectedPatient(RestApiGetCall& call) |
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292 { |
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293 if (call.IsDocumentation()) |
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294 { |
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295 call.GetDocumentation() |
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296 .SetTag("Patients") |
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297 .SetSummary("Is the patient protected against recycling?") |
4404 | 298 .SetUriArgument("id", "Orthanc identifier of the patient of interest") |
4403 | 299 .AddAnswerType(MimeType_PlainText, "`1` if protected, `0` if not protected"); |
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300 return; |
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301 } |
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302 |
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303 std::string publicId = call.GetUriComponent("id", ""); |
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304 bool isProtected = OrthancRestApi::GetIndex(call).IsProtectedPatient(publicId); |
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305 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", MimeType_PlainText); |
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306 } |
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307 |
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308 |
974 | 309 static void SetPatientProtection(RestApiPutCall& call) |
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310 { |
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311 if (call.IsDocumentation()) |
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312 { |
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313 call.GetDocumentation() |
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314 .SetTag("Patients") |
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315 .SetSummary("Protect one patient against recycling") |
4403 | 316 .SetDescription("Check out configuration options `MaximumStorageSize` and `MaximumPatientCount`") |
4404 | 317 .SetUriArgument("id", "Orthanc identifier of the patient of interest"); |
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318 return; |
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319 } |
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320 |
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321 ServerContext& context = OrthancRestApi::GetContext(call); |
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322 |
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323 std::string publicId = call.GetUriComponent("id", ""); |
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324 |
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325 context.GetIndex().SetProtectedPatient(publicId, call.ParseBooleanBody()); |
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326 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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327 } |
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328 |
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329 |
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330 // Get information about a single instance ---------------------------------- |
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331 |
974 | 332 static void GetInstanceFile(RestApiGetCall& call) |
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333 { |
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334 if (call.IsDocumentation()) |
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335 { |
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336 call.GetDocumentation() |
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337 .SetTag("Instances") |
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338 .SetSummary("Download DICOM") |
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339 .SetDescription("Download one DICOM instance") |
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340 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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341 .SetHttpHeader("Accept", "This HTTP header can be set to retrieve the DICOM instance in DICOMweb format") |
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342 .AddAnswerType(MimeType_Dicom, "The DICOM instance") |
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343 .AddAnswerType(MimeType_DicomWebJson, "The DICOM instance, in DICOMweb JSON format") |
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344 .AddAnswerType(MimeType_DicomWebXml, "The DICOM instance, in DICOMweb XML format"); |
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345 return; |
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346 } |
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347 |
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348 ServerContext& context = OrthancRestApi::GetContext(call); |
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349 |
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350 std::string publicId = call.GetUriComponent("id", ""); |
3203
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351 |
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352 HttpToolbox::Arguments::const_iterator accept = call.GetHttpHeaders().find("accept"); |
3203
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353 if (accept != call.GetHttpHeaders().end()) |
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354 { |
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355 // New in Orthanc 1.5.4 |
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356 try |
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357 { |
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358 MimeType mime = StringToMimeType(accept->second.c_str()); |
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359 |
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360 if (mime == MimeType_DicomWebJson || |
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361 mime == MimeType_DicomWebXml) |
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362 { |
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363 DicomWebJsonVisitor visitor; |
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364 |
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365 { |
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366 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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367 locker.GetDicom().Apply(visitor); |
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368 } |
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369 |
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370 if (mime == MimeType_DicomWebJson) |
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371 { |
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372 std::string s = visitor.GetResult().toStyledString(); |
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373 call.GetOutput().AnswerBuffer(s, MimeType_DicomWebJson); |
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374 } |
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375 else |
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376 { |
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377 std::string xml; |
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378 visitor.FormatXml(xml); |
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379 call.GetOutput().AnswerBuffer(xml, MimeType_DicomWebXml); |
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380 } |
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381 |
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382 return; |
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383 } |
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384 } |
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385 catch (OrthancException&) |
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386 { |
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387 } |
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388 } |
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389 |
1146
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390 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_Dicom); |
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391 } |
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392 |
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393 |
974 | 394 static void ExportInstanceFile(RestApiPostCall& call) |
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395 { |
4421 | 396 if (call.IsDocumentation()) |
397 { | |
398 call.GetDocumentation() | |
399 .SetTag("Instances") | |
400 .SetSummary("Write DICOM onto filesystem") | |
401 .SetDescription("Write the DICOM file onto the filesystem where Orthanc is running") | |
402 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
403 .AddRequestType(MimeType_PlainText, "Target path on the filesystem"); | |
404 return; | |
405 } | |
406 | |
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407 ServerContext& context = OrthancRestApi::GetContext(call); |
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408 |
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409 std::string publicId = call.GetUriComponent("id", ""); |
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410 |
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411 std::string dicom; |
2124 | 412 context.ReadDicom(dicom, publicId); |
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413 |
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414 std::string target; |
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415 call.BodyToString(target); |
2140 | 416 SystemToolbox::WriteFile(dicom, target); |
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417 |
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418 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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419 } |
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420 |
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421 |
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422 template <DicomToJsonFormat format> |
974 | 423 static void GetInstanceTags(RestApiGetCall& call) |
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424 { |
4404 | 425 if (call.IsDocumentation()) |
426 { | |
427 if (format == DicomToJsonFormat_Human) | |
428 { | |
429 call.GetDocumentation() | |
430 .SetTag("Instances") | |
431 .SetSummary("Get human-readable tags") | |
432 .SetDescription("Get the DICOM tags in human-readable format") | |
433 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
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434 .SetHttpGetArgument("ignore-length", RestApiCallDocumentation::Type_JsonListOfStrings, |
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435 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
4404 | 436 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
4415 | 437 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/simplified-tags", 10); |
4404 | 438 return; |
439 } | |
440 else | |
441 { | |
442 throw OrthancException(ErrorCode_NotImplemented); | |
443 } | |
444 } | |
445 | |
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446 ServerContext& context = OrthancRestApi::GetContext(call); |
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447 |
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448 std::string publicId = call.GetUriComponent("id", ""); |
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449 |
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450 std::set<DicomTag> ignoreTagLength; |
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451 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
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452 |
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453 if (format != DicomToJsonFormat_Full || |
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454 !ignoreTagLength.empty()) |
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455 { |
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456 Json::Value full; |
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457 context.ReadDicomAsJson(full, publicId, ignoreTagLength); |
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458 AnswerDicomAsJson(call, full, format); |
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459 } |
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460 else |
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461 { |
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462 // This path allows one to avoid the JSON decoding if no |
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463 // simplification is asked, and if no "ignore-length" argument |
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464 // is present |
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465 Json::Value full; |
2127 | 466 context.ReadDicomAsJson(full, publicId); |
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467 call.GetOutput().AnswerJson(full); |
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468 } |
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469 } |
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470 |
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471 |
974 | 472 static void GetInstanceTagsBis(RestApiGetCall& call) |
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473 { |
4404 | 474 if (call.IsDocumentation()) |
475 { | |
476 call.GetDocumentation() | |
477 .SetTag("Instances") | |
478 .SetSummary("Get DICOM tags") | |
479 .SetDescription("Get the DICOM tags in the specified format. By default, the `full` format is used, which " | |
480 "combines hexadecimal tags with human-readable description.") | |
481 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
482 .SetHttpGetArgument("simplify", RestApiCallDocumentation::Type_String, | |
483 "If present, report the DICOM tags in human-readable format " | |
484 "(same as the `/instances/{id}/simplified-tags` route)", false) | |
485 .SetHttpGetArgument("short", RestApiCallDocumentation::Type_String, | |
486 "If present, report the DICOM tags indexed in hexadecimal format", false) | |
487 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
4415 | 488 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/tags", 10); |
4404 | 489 return; |
490 } | |
491 | |
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492 switch (GetDicomFormat(call)) |
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493 { |
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494 case DicomToJsonFormat_Human: |
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495 GetInstanceTags<DicomToJsonFormat_Human>(call); |
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496 break; |
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497 |
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498 case DicomToJsonFormat_Short: |
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499 GetInstanceTags<DicomToJsonFormat_Short>(call); |
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500 break; |
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501 |
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502 case DicomToJsonFormat_Full: |
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503 GetInstanceTags<DicomToJsonFormat_Full>(call); |
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504 break; |
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505 |
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506 default: |
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507 throw OrthancException(ErrorCode_InternalError); |
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508 } |
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509 } |
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510 |
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511 |
974 | 512 static void ListFrames(RestApiGetCall& call) |
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513 { |
4414 | 514 if (call.IsDocumentation()) |
515 { | |
516 call.GetDocumentation() | |
517 .SetTag("Instances") | |
518 .SetSummary("List available frames") | |
519 .SetDescription("List the frames that are available in the DICOM instance of interest") | |
520 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
521 .AddAnswerType(MimeType_Json, "The list of the indices of the available frames") | |
522 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/frames", true); | |
523 return; | |
524 } | |
525 | |
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526 std::string publicId = call.GetUriComponent("id", ""); |
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527 |
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528 unsigned int numberOfFrames; |
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529 |
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530 { |
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531 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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532 numberOfFrames = locker.GetDicom().GetFramesCount(); |
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533 } |
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534 |
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535 Json::Value result = Json::arrayValue; |
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536 for (unsigned int i = 0; i < numberOfFrames; i++) |
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537 { |
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538 result.append(i); |
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539 } |
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540 |
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541 call.GetOutput().AnswerJson(result); |
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542 } |
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543 |
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544 |
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545 namespace |
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546 { |
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547 class ImageToEncode |
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548 { |
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549 private: |
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550 std::unique_ptr<ImageAccessor>& image_; |
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551 ImageExtractionMode mode_; |
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552 bool invert_; |
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553 MimeType format_; |
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554 std::string answer_; |
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555 |
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556 public: |
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557 ImageToEncode(std::unique_ptr<ImageAccessor>& image, |
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558 ImageExtractionMode mode, |
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559 bool invert) : |
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560 image_(image), |
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561 mode_(mode), |
4205 | 562 invert_(invert), |
563 format_(MimeType_Binary) | |
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564 { |
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565 } |
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566 |
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567 void Answer(RestApiOutput& output) |
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568 { |
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569 output.AnswerBuffer(answer_, format_); |
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570 } |
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571 |
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572 void EncodeUsingPng() |
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573 { |
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574 format_ = MimeType_Png; |
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575 DicomImageDecoder::ExtractPngImage(answer_, image_, mode_, invert_); |
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576 } |
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577 |
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578 void EncodeUsingPam() |
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579 { |
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580 format_ = MimeType_Pam; |
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581 DicomImageDecoder::ExtractPamImage(answer_, image_, mode_, invert_); |
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582 } |
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583 |
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584 void EncodeUsingJpeg(uint8_t quality) |
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585 { |
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586 format_ = MimeType_Jpeg; |
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587 DicomImageDecoder::ExtractJpegImage(answer_, image_, mode_, invert_, quality); |
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588 } |
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589 }; |
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590 |
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591 class EncodePng : public HttpContentNegociation::IHandler |
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592 { |
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593 private: |
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594 ImageToEncode& image_; |
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595 |
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596 public: |
4205 | 597 explicit EncodePng(ImageToEncode& image) : image_(image) |
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598 { |
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599 } |
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600 |
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601 virtual void Handle(const std::string& type, |
4205 | 602 const std::string& subtype) ORTHANC_OVERRIDE |
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603 { |
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604 assert(type == "image"); |
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605 assert(subtype == "png"); |
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606 image_.EncodeUsingPng(); |
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607 } |
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608 }; |
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609 |
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610 class EncodePam : public HttpContentNegociation::IHandler |
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611 { |
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612 private: |
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613 ImageToEncode& image_; |
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614 |
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615 public: |
4205 | 616 explicit EncodePam(ImageToEncode& image) : image_(image) |
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617 { |
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618 } |
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619 |
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620 virtual void Handle(const std::string& type, |
4205 | 621 const std::string& subtype) ORTHANC_OVERRIDE |
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622 { |
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623 assert(type == "image"); |
2780 | 624 assert(subtype == "x-portable-arbitrarymap"); |
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625 image_.EncodeUsingPam(); |
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626 } |
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627 }; |
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628 |
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629 class EncodeJpeg : public HttpContentNegociation::IHandler |
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630 { |
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631 private: |
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632 ImageToEncode& image_; |
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633 unsigned int quality_; |
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634 |
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635 public: |
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636 EncodeJpeg(ImageToEncode& image, |
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637 const RestApiGetCall& call) : |
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638 image_(image) |
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639 { |
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640 std::string v = call.GetArgument("quality", "90" /* default JPEG quality */); |
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641 bool ok = false; |
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642 |
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643 try |
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644 { |
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645 quality_ = boost::lexical_cast<unsigned int>(v); |
1847 | 646 ok = (quality_ >= 1 && quality_ <= 100); |
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647 } |
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648 catch (boost::bad_lexical_cast&) |
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649 { |
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650 } |
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651 |
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652 if (!ok) |
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653 { |
2955 | 654 throw OrthancException( |
655 ErrorCode_BadRequest, | |
656 "Bad quality for a JPEG encoding (must be a number between 0 and 100): " + v); | |
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657 } |
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658 } |
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659 |
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660 virtual void Handle(const std::string& type, |
4205 | 661 const std::string& subtype) ORTHANC_OVERRIDE |
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662 { |
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663 assert(type == "image"); |
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664 assert(subtype == "jpeg"); |
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665 image_.EncodeUsingJpeg(quality_); |
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666 } |
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667 }; |
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668 } |
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669 |
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670 |
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671 namespace |
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672 { |
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673 class IDecodedFrameHandler : public boost::noncopyable |
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674 { |
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675 public: |
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|
676 virtual ~IDecodedFrameHandler() |
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677 { |
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678 } |
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|
679 |
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680 virtual void Handle(RestApiGetCall& call, |
3712
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replacing std::auto_ptr by std::unique_ptr
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681 std::unique_ptr<ImageAccessor>& decoded, |
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682 const DicomMap& dicom) = 0; |
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683 |
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684 virtual bool RequiresDicomTags() const = 0; |
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685 |
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686 static void Apply(RestApiGetCall& call, |
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687 IDecodedFrameHandler& handler, |
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688 ImageExtractionMode mode /* for generation of documentation */, |
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689 bool isRendered /* for generation of documentation */) |
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690 { |
4406
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691 if (call.IsDocumentation()) |
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692 { |
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693 std::string m; |
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694 if (!isRendered) |
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695 { |
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696 switch (mode) |
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697 { |
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698 case ImageExtractionMode_Preview: |
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699 m = "preview"; |
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700 break; |
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701 case ImageExtractionMode_UInt8: |
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702 m = "uint8"; |
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703 break; |
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|
704 case ImageExtractionMode_UInt16: |
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705 m = "uint16"; |
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|
706 break; |
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|
707 case ImageExtractionMode_Int16: |
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708 m = "int16"; |
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|
709 break; |
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|
710 default: |
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|
711 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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712 } |
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|
713 } |
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|
714 |
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|
715 std::string description; |
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716 std::string verb = (isRendered ? "Render" : "Decode"); |
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717 |
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|
718 if (call.HasUriComponent("frame")) |
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|
719 { |
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720 description = verb + " one frame of interest from the given DICOM instance."; |
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|
721 call.GetDocumentation() |
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|
722 .SetSummary(verb + " a frame" + (m.empty() ? "" : " (" + m + ")")) |
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|
723 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
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724 } |
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|
725 else |
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|
726 { |
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|
727 description = verb + " the first frame of the given DICOM instance."; |
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|
728 call.GetDocumentation() |
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|
729 .SetSummary(verb + " an image" + (m.empty() ? "" : " (" + m + ")")); |
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|
730 } |
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|
731 |
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diff
changeset
|
732 if (isRendered) |
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diff
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|
733 { |
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diff
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734 description += (" This function takes scaling into account (`RescaleSlope` and `RescaleIntercept` tags), " |
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diff
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|
735 "as well as the default windowing stored in the DICOM file (`WindowCenter` and `WindowWidth`tags), " |
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diff
changeset
|
736 "and can be used to resize the resulting image. Color images are not affected by windowing."); |
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|
737 call.GetDocumentation() |
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diff
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|
738 .SetHttpGetArgument("window-center",RestApiCallDocumentation::Type_Number, "Windowing center", false) |
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|
739 .SetHttpGetArgument("window-width",RestApiCallDocumentation::Type_Number, "Windowing width", false) |
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diff
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|
740 .SetHttpGetArgument("width",RestApiCallDocumentation::Type_Number, "Width of the resized image", false) |
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diff
changeset
|
741 .SetHttpGetArgument("height",RestApiCallDocumentation::Type_Number, "Height of the resized image", false) |
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diff
changeset
|
742 .SetHttpGetArgument("smooth",RestApiCallDocumentation::Type_Boolean, "Whether to smooth image on resize", false); |
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|
743 } |
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|
744 else |
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diff
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|
745 { |
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diff
changeset
|
746 switch (mode) |
4cb9f66a1c7c
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diff
changeset
|
747 { |
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changeset
|
748 case ImageExtractionMode_Preview: |
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|
749 description += " The full dynamic range of grayscale images is rescaled to the [0,255] range."; |
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diff
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|
750 break; |
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diff
changeset
|
751 case ImageExtractionMode_UInt8: |
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changeset
|
752 description += " Pixels of grayscale images are truncated to the [0,255] range."; |
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diff
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|
753 break; |
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diff
changeset
|
754 case ImageExtractionMode_UInt16: |
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diff
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|
755 description += " Pixels of grayscale images are truncated to the [0,65535] range."; |
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diff
changeset
|
756 break; |
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diff
changeset
|
757 case ImageExtractionMode_Int16: |
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diff
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|
758 description += (" Pixels of grayscale images are truncated to the [-32768,32767] range. " |
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diff
changeset
|
759 "Negative values must be interpreted according to two's complement."); |
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diff
changeset
|
760 break; |
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diff
changeset
|
761 default: |
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changeset
|
762 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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diff
changeset
|
763 } |
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diff
changeset
|
764 } |
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diff
changeset
|
765 |
4cb9f66a1c7c
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diff
changeset
|
766 call.GetDocumentation() |
4cb9f66a1c7c
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diff
changeset
|
767 .SetTag("Instances") |
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|
768 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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diff
changeset
|
769 .SetHttpGetArgument("quality", RestApiCallDocumentation::Type_Number, "Quality for JPEG images (between 1 and 100, defaults to 90)", false) |
4cb9f66a1c7c
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diff
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|
770 .SetHttpHeader("Accept", "Format of the resulting image. Can be `image/png` (default), `image/jpeg` or `image/x-portable-arbitrarymap`") |
4cb9f66a1c7c
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diff
changeset
|
771 .AddAnswerType(MimeType_Png, "PNG image") |
4cb9f66a1c7c
documenting generation of images
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diff
changeset
|
772 .AddAnswerType(MimeType_Jpeg, "JPEG image") |
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
773 .AddAnswerType(MimeType_Pam, "PAM image (Portable Arbitrary Map)") |
4cb9f66a1c7c
documenting generation of images
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diff
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|
774 .SetDescription(description); |
4cb9f66a1c7c
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diff
changeset
|
775 |
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diff
changeset
|
776 return; |
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diff
changeset
|
777 } |
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diff
changeset
|
778 |
3683
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diff
changeset
|
779 ServerContext& context = OrthancRestApi::GetContext(call); |
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
780 |
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
781 std::string frameId = call.GetUriComponent("frame", "0"); |
12253ddefe5a
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diff
changeset
|
782 |
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diff
changeset
|
783 unsigned int frame; |
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diff
changeset
|
784 try |
12253ddefe5a
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diff
changeset
|
785 { |
12253ddefe5a
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diff
changeset
|
786 frame = boost::lexical_cast<unsigned int>(frameId); |
12253ddefe5a
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diff
changeset
|
787 } |
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788 catch (boost::bad_lexical_cast&) |
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789 { |
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790 return; |
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791 } |
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792 |
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793 DicomMap dicom; |
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|
794 std::unique_ptr<ImageAccessor> decoded; |
3683
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795 |
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796 try |
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797 { |
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798 std::string publicId = call.GetUriComponent("id", ""); |
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799 |
3928
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ServerContext::DecodeDicomFrame()
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800 decoded.reset(context.DecodeDicomFrame(publicId, frame)); |
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801 |
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802 if (decoded.get() == NULL) |
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803 { |
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ServerContext::DecodeDicomFrame()
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804 throw OrthancException(ErrorCode_NotImplemented, |
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ServerContext::DecodeDicomFrame()
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805 "Cannot decode DICOM instance with ID: " + publicId); |
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806 } |
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|
807 |
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ServerContext::DecodeDicomFrame()
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808 if (handler.RequiresDicomTags()) |
4cdc875510d1
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|
809 { |
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ServerContext::DecodeDicomFrame()
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|
810 /** |
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ServerContext::DecodeDicomFrame()
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811 * Retrieve a summary of the DICOM tags, which is |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
812 * necessary to deal with MONOCHROME1 photometric |
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ServerContext::DecodeDicomFrame()
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813 * interpretation, and with windowing parameters. |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
814 **/ |
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ServerContext::DecodeDicomFrame()
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|
815 ServerContext::DicomCacheLocker locker(context, publicId); |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
816 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom()); |
3683
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817 } |
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818 } |
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819 catch (OrthancException& e) |
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820 { |
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821 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange || |
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822 e.GetErrorCode() == ErrorCode_UnknownResource) |
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823 { |
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824 // The frame number is out of the range for this DICOM |
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825 // instance, the resource is not existent |
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826 } |
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827 else |
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828 { |
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829 std::string root = ""; |
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830 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
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831 { |
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832 root += "../"; |
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833 } |
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834 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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835 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
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836 } |
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|
837 return; |
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838 } |
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839 |
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|
840 handler.Handle(call, decoded, dicom); |
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|
841 } |
3685
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|
842 |
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|
843 |
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|
844 static void DefaultHandler(RestApiGetCall& call, |
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|
845 std::unique_ptr<ImageAccessor>& decoded, |
3685
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|
846 ImageExtractionMode mode, |
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847 bool invert) |
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|
848 { |
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|
849 ImageToEncode image(decoded, mode, invert); |
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850 |
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851 HttpContentNegociation negociation; |
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852 EncodePng png(image); |
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|
853 negociation.Register(MIME_PNG, png); |
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|
854 |
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|
855 EncodeJpeg jpeg(image, call); |
2cc34837d694
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|
856 negociation.Register(MIME_JPEG, jpeg); |
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|
857 |
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changeset
|
858 EncodePam pam(image); |
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|
859 negociation.Register(MIME_PAM, pam); |
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changeset
|
860 |
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|
861 if (negociation.Apply(call.GetHttpHeaders())) |
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862 { |
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|
863 image.Answer(call.GetOutput()); |
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864 } |
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|
865 } |
3683
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866 }; |
3600
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867 |
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|
868 |
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869 class GetImageHandler : public IDecodedFrameHandler |
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870 { |
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|
871 private: |
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872 ImageExtractionMode mode_; |
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873 |
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874 public: |
4205 | 875 explicit GetImageHandler(ImageExtractionMode mode) : |
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876 mode_(mode) |
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877 { |
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878 } |
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|
879 |
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|
880 virtual void Handle(RestApiGetCall& call, |
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881 std::unique_ptr<ImageAccessor>& decoded, |
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882 const DicomMap& dicom) ORTHANC_OVERRIDE |
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883 { |
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884 bool invert = false; |
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885 |
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886 if (mode_ == ImageExtractionMode_Preview) |
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887 { |
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888 DicomImageInformation info(dicom); |
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889 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
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890 } |
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|
891 |
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|
892 DefaultHandler(call, decoded, mode_, invert); |
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893 } |
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|
894 |
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|
895 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
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896 { |
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897 return mode_ == ImageExtractionMode_Preview; |
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898 } |
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|
899 }; |
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|
900 |
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|
901 |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
902 class RenderedFrameHandler : public IDecodedFrameHandler |
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
903 { |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
904 private: |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
905 static void GetDicomParameters(bool& invert, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
906 float& rescaleSlope, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
907 float& rescaleIntercept, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
908 float& windowWidth, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
909 float& windowCenter, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
910 const DicomMap& dicom) |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
911 { |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
912 DicomImageInformation info(dicom); |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
913 |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
914 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
915 |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
916 rescaleSlope = 1.0f; |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
917 rescaleIntercept = 0.0f; |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
918 |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
919 if (dicom.HasTag(Orthanc::DICOM_TAG_RESCALE_SLOPE) && |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
920 dicom.HasTag(Orthanc::DICOM_TAG_RESCALE_INTERCEPT)) |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
921 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
922 dicom.ParseFloat(rescaleSlope, Orthanc::DICOM_TAG_RESCALE_SLOPE); |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
923 dicom.ParseFloat(rescaleIntercept, Orthanc::DICOM_TAG_RESCALE_INTERCEPT); |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
924 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
925 |
3816
09f091b6b569
/rendered route: fix automatic windowing of files without windowing tags and RescaleSlope != 1
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
926 windowWidth = static_cast<float>(1 << info.GetBitsStored()) * rescaleSlope; |
09f091b6b569
/rendered route: fix automatic windowing of files without windowing tags and RescaleSlope != 1
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
927 windowCenter = windowWidth / 2.0f + rescaleIntercept; |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
928 |
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
929 if (dicom.HasTag(Orthanc::DICOM_TAG_WINDOW_CENTER) && |
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
930 dicom.HasTag(Orthanc::DICOM_TAG_WINDOW_WIDTH)) |
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
931 { |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
932 dicom.ParseFirstFloat(windowCenter, Orthanc::DICOM_TAG_WINDOW_CENTER); |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
933 dicom.ParseFirstFloat(windowWidth, Orthanc::DICOM_TAG_WINDOW_WIDTH); |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
934 } |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
935 } |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
936 |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
937 static void GetUserArguments(float& windowWidth /* inout */, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
938 float& windowCenter /* inout */, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
939 unsigned int& argWidth, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
940 unsigned int& argHeight, |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
941 bool& smooth, |
4205 | 942 const RestApiGetCall& call) |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
943 { |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
944 static const char* ARG_WINDOW_CENTER = "window-center"; |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
945 static const char* ARG_WINDOW_WIDTH = "window-width"; |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
946 static const char* ARG_WIDTH = "width"; |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
947 static const char* ARG_HEIGHT = "height"; |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
948 static const char* ARG_SMOOTH = "smooth"; |
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
949 |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
950 if (call.HasArgument(ARG_WINDOW_WIDTH)) |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
951 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
952 try |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
953 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
954 windowWidth = boost::lexical_cast<float>(call.GetArgument(ARG_WINDOW_WIDTH, "")); |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
955 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
956 catch (boost::bad_lexical_cast&) |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
957 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
958 throw OrthancException(ErrorCode_ParameterOutOfRange, |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
959 "Bad value for argument: " + std::string(ARG_WINDOW_WIDTH)); |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
960 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
961 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
962 |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
963 if (call.HasArgument(ARG_WINDOW_CENTER)) |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
964 { |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
965 try |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
966 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
967 windowCenter = boost::lexical_cast<float>(call.GetArgument(ARG_WINDOW_CENTER, "")); |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
968 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
969 catch (boost::bad_lexical_cast&) |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
970 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
971 throw OrthancException(ErrorCode_ParameterOutOfRange, |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
972 "Bad value for argument: " + std::string(ARG_WINDOW_CENTER)); |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
973 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
974 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
975 |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
976 argWidth = 0; |
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
977 argHeight = 0; |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
978 |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
979 if (call.HasArgument(ARG_WIDTH)) |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
980 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
981 try |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
982 { |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
983 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_WIDTH, "")); |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
984 if (tmp < 0) |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
985 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
986 throw OrthancException(ErrorCode_ParameterOutOfRange, |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
987 "Argument cannot be negative: " + std::string(ARG_WIDTH)); |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
988 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
989 else |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
990 { |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
991 argWidth = static_cast<unsigned int>(tmp); |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
992 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
993 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
994 catch (boost::bad_lexical_cast&) |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
995 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
996 throw OrthancException(ErrorCode_ParameterOutOfRange, |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
997 "Bad value for argument: " + std::string(ARG_WIDTH)); |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
998 } |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
999 } |
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1000 |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
1001 if (call.HasArgument(ARG_HEIGHT)) |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1002 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1003 try |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1004 { |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
1005 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_HEIGHT, "")); |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1006 if (tmp < 0) |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1007 { |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1008 throw OrthancException(ErrorCode_ParameterOutOfRange, |
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3687
diff
changeset
|
1009 "Argument cannot be negative: " + std::string(ARG_HEIGHT)); |
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1010 } |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1011 else |
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
1012 { |
3690
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1013 argHeight = static_cast<unsigned int>(tmp); |
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1014 } |
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1015 } |
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1016 catch (boost::bad_lexical_cast&) |
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1017 { |
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1018 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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1019 "Bad value for argument: " + std::string(ARG_HEIGHT)); |
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1020 } |
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1021 } |
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1022 |
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1023 smooth = false; |
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1024 |
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1025 if (call.HasArgument(ARG_SMOOTH)) |
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1026 { |
4473
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1027 smooth = RestApiCall::ParseBoolean(call.GetArgument(ARG_SMOOTH, "")); |
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1028 } |
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1029 } |
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1030 |
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1031 |
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1032 public: |
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1033 virtual void Handle(RestApiGetCall& call, |
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1034 std::unique_ptr<ImageAccessor>& decoded, |
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1035 const DicomMap& dicom) ORTHANC_OVERRIDE |
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1036 { |
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1037 bool invert; |
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1038 float rescaleSlope, rescaleIntercept, windowWidth, windowCenter; |
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1039 GetDicomParameters(invert, rescaleSlope, rescaleIntercept, windowWidth, windowCenter, dicom); |
3686 | 1040 |
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1041 unsigned int argWidth, argHeight; |
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1042 bool smooth; |
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1043 GetUserArguments(windowWidth, windowCenter, argWidth, argHeight, smooth, call); |
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1044 |
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1045 unsigned int targetWidth = decoded->GetWidth(); |
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1046 unsigned int targetHeight = decoded->GetHeight(); |
3686 | 1047 |
1048 if (decoded->GetWidth() != 0 && | |
1049 decoded->GetHeight() != 0) | |
1050 { | |
1051 float ratio = 1; | |
1052 | |
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1053 if (argWidth != 0 && |
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1054 argHeight != 0) |
3686 | 1055 { |
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1056 float ratioX = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
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1057 float ratioY = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
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1058 ratio = std::min(ratioX, ratioY); |
3686 | 1059 } |
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1060 else if (argWidth != 0) |
3686 | 1061 { |
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1062 ratio = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
3686 | 1063 } |
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1064 else if (argHeight != 0) |
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1065 { |
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1066 ratio = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
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1067 } |
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1068 |
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1069 targetWidth = boost::math::iround(ratio * static_cast<float>(decoded->GetWidth())); |
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1070 targetHeight = boost::math::iround(ratio * static_cast<float>(decoded->GetHeight())); |
3686 | 1071 } |
1072 | |
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1073 if (decoded->GetFormat() == PixelFormat_RGB24) |
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1074 { |
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1075 if (targetWidth == decoded->GetWidth() && |
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1076 targetHeight == decoded->GetHeight()) |
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1077 { |
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1078 DefaultHandler(call, decoded, ImageExtractionMode_Preview, false); |
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1079 } |
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1080 else |
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1081 { |
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1082 std::unique_ptr<ImageAccessor> resized( |
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1083 new Image(decoded->GetFormat(), targetWidth, targetHeight, false)); |
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1084 |
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1085 if (smooth && |
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1086 (targetWidth < decoded->GetWidth() || |
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1087 targetHeight < decoded->GetHeight())) |
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1088 { |
4065
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1089 ImageProcessing::SmoothGaussian5x5(*decoded, false /* be fast, don't round */); |
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1090 } |
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1091 |
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1092 ImageProcessing::Resize(*resized, *decoded); |
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1093 DefaultHandler(call, resized, ImageExtractionMode_Preview, false); |
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1094 } |
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1095 } |
3686 | 1096 else |
1097 { | |
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1098 // Grayscale image: (1) convert to Float32, (2) apply |
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1099 // windowing to get a Grayscale8, (3) possibly resize |
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1100 |
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1101 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
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1102 ImageProcessing::Convert(converted, *decoded); |
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1103 |
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1104 // Avoid divisions by zero |
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1105 if (windowWidth <= 1.0f) |
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1106 { |
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1107 windowWidth = 1; |
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1108 } |
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1109 |
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1110 if (std::abs(rescaleSlope) <= 0.1f) |
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1111 { |
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1112 rescaleSlope = 0.1f; |
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1113 } |
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1114 |
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1115 const float scaling = 255.0f * rescaleSlope / windowWidth; |
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1116 const float offset = (rescaleIntercept - windowCenter + windowWidth / 2.0f) / rescaleSlope; |
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1117 |
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1118 std::unique_ptr<ImageAccessor> rescaled(new Image(PixelFormat_Grayscale8, decoded->GetWidth(), decoded->GetHeight(), false)); |
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1119 ImageProcessing::ShiftScale(*rescaled, converted, offset, scaling, false); |
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1120 |
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1121 if (targetWidth == decoded->GetWidth() && |
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1122 targetHeight == decoded->GetHeight()) |
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1123 { |
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1124 DefaultHandler(call, rescaled, ImageExtractionMode_UInt8, invert); |
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1125 } |
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1126 else |
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1127 { |
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1128 std::unique_ptr<ImageAccessor> resized( |
3690
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1129 new Image(PixelFormat_Grayscale8, targetWidth, targetHeight, false)); |
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1130 |
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1131 if (smooth && |
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1132 (targetWidth < decoded->GetWidth() || |
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1133 targetHeight < decoded->GetHeight())) |
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1134 { |
4065
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1135 ImageProcessing::SmoothGaussian5x5(*rescaled, false /* be fast, don't round */); |
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1136 } |
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1137 |
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1138 ImageProcessing::Resize(*resized, *rescaled); |
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1139 DefaultHandler(call, resized, ImageExtractionMode_UInt8, invert); |
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1140 } |
3686 | 1141 } |
3683
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1142 } |
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1143 |
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1144 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
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1145 { |
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1146 return true; |
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1147 } |
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1148 }; |
3600
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1149 } |
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1150 |
3683
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1151 |
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1152 template <enum ImageExtractionMode mode> |
974 | 1153 static void GetImage(RestApiGetCall& call) |
751
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1154 { |
3926
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Allow concurrent calls to the custom image decoders provided by the plugins
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1155 Semaphore::Locker locker(throttlingSemaphore_); |
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1156 |
3683
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1157 GetImageHandler handler(mode); |
4406
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1158 IDecodedFrameHandler::Apply(call, handler, mode, false /* not rendered */); |
3683
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1159 } |
1906
d7c1cb559431
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1160 |
1826
ac5b0b4e2434
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diff
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1161 |
3683
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|
1162 static void GetRenderedFrame(RestApiGetCall& call) |
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1163 { |
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|
1164 Semaphore::Locker locker(throttlingSemaphore_); |
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1165 |
3683
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|
1166 RenderedFrameHandler handler; |
4406
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diff
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|
1167 IDecodedFrameHandler::Apply(call, handler, ImageExtractionMode_Preview /* arbitrary value */, true); |
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1168 } |
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|
1169 |
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1170 |
974 | 1171 static void GetMatlabImage(RestApiGetCall& call) |
874
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1172 { |
4414 | 1173 if (call.IsDocumentation()) |
1174 { | |
1175 std::string description; | |
1176 | |
1177 if (call.HasUriComponent("frame")) | |
1178 { | |
1179 description = "Decode one frame of interest from the given DICOM instance"; | |
1180 call.GetDocumentation() | |
1181 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
1182 } | |
1183 else | |
1184 { | |
1185 description = "Decode the first frame of the given DICOM instance."; | |
1186 } | |
1187 | |
1188 call.GetDocumentation() | |
1189 .SetTag("Instances") | |
1190 .SetSummary("Decode frame for Matlab") | |
1191 .SetDescription(description + ", and export this frame as a Octave/Matlab matrix to be imported with `eval()`: " | |
1192 "https://book.orthanc-server.com/faq/matlab.html") | |
1193 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
1194 .AddAnswerType(MimeType_PlainText, "Octave/Matlab matrix"); | |
1195 return; | |
1196 } | |
1197 | |
3926
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diff
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1198 Semaphore::Locker locker(throttlingSemaphore_); |
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diff
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|
1199 |
874
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1200 ServerContext& context = OrthancRestApi::GetContext(call); |
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1201 |
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diff
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1202 std::string frameId = call.GetUriComponent("frame", "0"); |
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diff
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|
1203 |
87791ebc1f50
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diff
changeset
|
1204 unsigned int frame; |
87791ebc1f50
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|
1205 try |
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diff
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|
1206 { |
87791ebc1f50
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diff
changeset
|
1207 frame = boost::lexical_cast<unsigned int>(frameId); |
87791ebc1f50
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diff
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|
1208 } |
2836
7133ad478eea
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|
1209 catch (boost::bad_lexical_cast&) |
874
87791ebc1f50
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diff
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|
1210 { |
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diff
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|
1211 return; |
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diff
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|
1212 } |
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|
1213 |
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diff
changeset
|
1214 std::string publicId = call.GetUriComponent("id", ""); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
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|
1215 std::unique_ptr<ImageAccessor> decoded(context.DecodeDicomFrame(publicId, frame)); |
874
87791ebc1f50
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diff
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|
1216 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1217 if (decoded.get() == NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1218 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1219 throw OrthancException(ErrorCode_NotImplemented, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1220 "Cannot decode DICOM instance with ID: " + publicId); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1221 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1222 else |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1223 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1224 std::string result; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1225 decoded->ToMatlabString(result); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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3926
diff
changeset
|
1226 call.GetOutput().AnswerBuffer(result, MimeType_PlainText); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
1227 } |
874
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1228 } |
87791ebc1f50
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diff
changeset
|
1229 |
87791ebc1f50
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diff
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|
1230 |
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
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2382
diff
changeset
|
1231 template <bool GzipCompression> |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1232 static void GetRawFrame(RestApiGetCall& call) |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1233 { |
4408 | 1234 if (call.IsDocumentation()) |
1235 { | |
1236 call.GetDocumentation() | |
1237 .SetTag("Instances") | |
1238 .SetSummary("Access raw frame" + std::string(GzipCompression ? " (compressed)" : "")) | |
1239 .SetDescription("Access the raw content of one individual frame of the DICOM instance of interest, " | |
1240 "bypassing image decoding. This is notably useful to access the source files " | |
1241 "in compressed transfer syntaxes." + | |
1242 std::string(GzipCompression ? " The image is compressed using gzip" : "")) | |
4424
83371ccdfe80
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4422
diff
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1243 .SetUriArgument("id", "Orthanc identifier of the instance of interest") |
4408 | 1244 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
1245 | |
1246 if (GzipCompression) | |
1247 { | |
1248 call.GetDocumentation().AddAnswerType(MimeType_Gzip, "The raw frame, compressed using gzip"); | |
1249 } | |
1250 else | |
1251 { | |
1252 call.GetDocumentation().AddAnswerType(MimeType_Binary, "The raw frame"); | |
1253 } | |
1254 return; | |
1255 } | |
1256 | |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1257 std::string frameId = call.GetUriComponent("frame", "0"); |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1258 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1259 unsigned int frame; |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1260 try |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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1261 { |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1262 frame = boost::lexical_cast<unsigned int>(frameId); |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1263 } |
2836
7133ad478eea
fix Debian warnings
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2804
diff
changeset
|
1264 catch (boost::bad_lexical_cast&) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1265 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1266 return; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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1267 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1268 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1269 std::string publicId = call.GetUriComponent("id", ""); |
2908
9d277f8ad698
new enumeration: MimeType
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2905
diff
changeset
|
1270 std::string raw; |
9d277f8ad698
new enumeration: MimeType
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2905
diff
changeset
|
1271 MimeType mime; |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1272 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1273 { |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1274 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1275 locker.GetDicom().GetRawFrame(raw, mime, frame); |
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1276 } |
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1277 |
2408
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1278 if (GzipCompression) |
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1279 { |
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1280 GzipCompressor gzip; |
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1281 std::string compressed; |
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1282 gzip.Compress(compressed, raw.empty() ? NULL : raw.c_str(), raw.size()); |
2908
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1283 call.GetOutput().AnswerBuffer(compressed, MimeType_Gzip); |
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1284 } |
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1285 else |
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1286 { |
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1287 call.GetOutput().AnswerBuffer(raw, mime); |
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1288 } |
1924
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1289 } |
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1290 |
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1291 |
974 | 1292 static void GetResourceStatistics(RestApiGetCall& call) |
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1293 { |
4418 | 1294 if (call.IsDocumentation()) |
1295 { | |
1296 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1297 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1298 call.GetDocumentation() | |
1299 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1300 .SetSummary("Get " + r + " statistics") | |
1301 .SetDescription("Get statistics about the given " + r) | |
1302 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
1303 .SetAnswerField("DiskSize", RestApiCallDocumentation::Type_String, | |
1304 "Size of the " + r + " on the disk in bytes, expressed as a string for 64bit compatibility with JSON") | |
1305 .SetAnswerField("DiskSizeMB", RestApiCallDocumentation::Type_Number, | |
1306 "Size of the " + r + " on the disk, expressed in megabytes (MB)") | |
1307 .SetAnswerField("UncompressedSize", RestApiCallDocumentation::Type_String, | |
1308 "Size of the " + r + " after decompression in bytes, expressed as a string for 64bit compatibility with JSON") | |
1309 .SetAnswerField("UncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
1310 "Size of the " + r + " after decompression, expressed in megabytes (MB). " | |
1311 "This is different from `DiskSizeMB` iff `StorageCompression` is `true`.") | |
1312 .SetAnswerField("DicomDiskSize", RestApiCallDocumentation::Type_String, | |
1313 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in bytes") | |
1314 .SetAnswerField("DicomDiskSizeMB", RestApiCallDocumentation::Type_Number, | |
1315 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
1316 .SetAnswerField("DicomUncompressedSize", RestApiCallDocumentation::Type_String, | |
1317 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in bytes") | |
1318 .SetAnswerField("DicomUncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
1319 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
1320 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/statistics", true); | |
1321 | |
1322 switch (t) | |
1323 { | |
1324 // Do NOT add "break" below this point! | |
1325 case ResourceType_Patient: | |
1326 call.GetDocumentation().SetAnswerField("CountStudies", RestApiCallDocumentation::Type_Number, | |
1327 "Number of child studies within this " + r); | |
1328 | |
1329 case ResourceType_Study: | |
1330 call.GetDocumentation().SetAnswerField("CountSeries", RestApiCallDocumentation::Type_Number, | |
1331 "Number of child series within this " + r); | |
1332 | |
1333 case ResourceType_Series: | |
1334 call.GetDocumentation().SetAnswerField("CountInstances", RestApiCallDocumentation::Type_Number, | |
1335 "Number of child instances within this " + r); | |
1336 | |
1337 case ResourceType_Instance: | |
1338 default: | |
1339 break; | |
1340 } | |
1341 | |
1342 return; | |
1343 } | |
1344 | |
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1345 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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1346 |
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1347 std::string publicId = call.GetUriComponent("id", ""); |
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1348 |
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1349 ResourceType type; |
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1350 uint64_t diskSize, uncompressedSize, dicomDiskSize, dicomUncompressedSize; |
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1351 unsigned int countStudies, countSeries, countInstances; |
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1352 OrthancRestApi::GetIndex(call).GetResourceStatistics( |
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1353 type, diskSize, uncompressedSize, countStudies, countSeries, |
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1354 countInstances, dicomDiskSize, dicomUncompressedSize, publicId); |
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1355 |
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1356 Json::Value result = Json::objectValue; |
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1357 result["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1358 result["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
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1359 result["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1360 result["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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1361 |
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1362 result["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1363 result["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1364 result["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1365 result["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1366 |
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1367 switch (type) |
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1368 { |
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1369 // Do NOT add "break" below this point! |
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1370 case ResourceType_Patient: |
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1371 result["CountStudies"] = countStudies; |
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1372 |
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1373 case ResourceType_Study: |
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1374 result["CountSeries"] = countSeries; |
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1375 |
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1376 case ResourceType_Series: |
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1377 result["CountInstances"] = countInstances; |
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1378 |
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1379 case ResourceType_Instance: |
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1380 default: |
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1381 break; |
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1382 } |
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1383 |
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1384 call.GetOutput().AnswerJson(result); |
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1385 } |
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1386 |
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1387 |
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1388 |
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1389 // Handling of metadata ----------------------------------------------------- |
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1390 |
4205 | 1391 static void CheckValidResourceType(const RestApiCall& call) |
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1392 { |
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1393 assert(!call.GetFullUri().empty()); |
4409 | 1394 const std::string resourceType = call.GetFullUri() [0]; |
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1395 StringToResourceType(resourceType.c_str()); |
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1396 } |
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1397 |
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1398 |
974 | 1399 static void ListMetadata(RestApiGetCall& call) |
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1400 { |
4414 | 1401 if (call.IsDocumentation()) |
1402 { | |
1403 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1404 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1405 call.GetDocumentation() | |
1406 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1407 .SetSummary("List metadata") | |
1408 .SetDescription("Get the list of metadata that are associated with the given " + r) | |
1409 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
1410 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, | |
1411 "If present, also retrieve the value of the individual metadata", false) | |
1412 .AddAnswerType(MimeType_Json, "JSON array containing the names of the available metadata, " | |
1413 "or JSON associative array mapping metadata to their values (if `expand` argument is provided)") | |
1414 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/metadata", true); | |
1415 return; | |
1416 } | |
1417 | |
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1418 assert(!call.GetFullUri().empty()); |
4554 | 1419 const std::string publicId = call.GetUriComponent("id", ""); |
1420 ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); | |
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1421 |
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1422 typedef std::map<MetadataType, std::string> Metadata; |
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1423 |
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1424 Metadata metadata; |
4554 | 1425 OrthancRestApi::GetIndex(call).GetAllMetadata(metadata, publicId, level); |
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1426 |
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1427 Json::Value result; |
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1428 |
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1429 if (call.HasArgument("expand")) |
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1430 { |
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1431 result = Json::objectValue; |
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1432 |
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1433 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
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1434 { |
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1435 std::string key = EnumerationToString(it->first); |
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1436 result[key] = it->second; |
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1437 } |
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1438 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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1439 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1440 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1441 result = Json::arrayValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1442 |
4551
350a22c094f2
testing replay of transactions
Sebastien Jodogne <s.jodogne@gmail.com>
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4514
diff
changeset
|
1443 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
2726
46061a91c88a
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diff
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|
1444 { |
3187
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1445 result.append(EnumerationToString(it->first)); |
2726
46061a91c88a
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|
1446 } |
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|
1447 } |
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|
1448 |
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|
1449 call.GetOutput().AnswerJson(result); |
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|
1450 } |
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|
1451 |
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|
1452 |
4623
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1453 static bool GetRevisionHeader(int64_t& revision /* out */, |
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|
1454 const RestApiCall& call, |
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|
1455 const std::string& header) |
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|
1456 { |
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|
1457 std::string lower; |
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|
1458 Toolbox::ToLowerCase(lower, header); |
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|
1459 |
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|
1460 HttpToolbox::Arguments::const_iterator found = call.GetHttpHeaders().find(lower); |
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|
1461 if (found == call.GetHttpHeaders().end()) |
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|
1462 { |
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|
1463 return false; |
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|
1464 } |
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1465 else |
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|
1466 { |
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1467 std::string value = Toolbox::StripSpaces(found->second); |
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|
1468 Toolbox::RemoveSurroundingQuotes(value); |
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|
1469 |
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|
1470 try |
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|
1471 { |
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1472 revision = boost::lexical_cast<int64_t>(value); |
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|
1473 return true; |
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|
1474 } |
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|
1475 catch (boost::bad_lexical_cast&) |
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|
1476 { |
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|
1477 throw OrthancException(ErrorCode_ParameterOutOfRange, "The \"" + header + |
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|
1478 "\" HTTP header should contain the revision as an integer, but found: " + value); |
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|
1479 } |
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|
1480 } |
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|
1481 } |
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|
1482 |
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|
1483 |
974 | 1484 static void GetMetadata(RestApiGetCall& call) |
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|
1485 { |
4414 | 1486 if (call.IsDocumentation()) |
1487 { | |
1488 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1489 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1490 call.GetDocumentation() | |
1491 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1492 .SetSummary("Get metadata") | |
1493 .SetDescription("Get the value of a metadata that is associated with the given " + r) | |
1494 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
1495 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
4623
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1496 .AddAnswerType(MimeType_PlainText, "Value of the metadata") |
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1497 .SetAnswerHeader("ETag", "Revision of the metadata, to be used in further `PUT` or `DELETE` operations") |
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1498 .SetHttpHeader("If-None-Match", "Optional revision of the metadata, to check if its content has changed"); |
4414 | 1499 return; |
1500 } | |
1501 | |
4460
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|
1502 assert(!call.GetFullUri().empty()); |
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1503 const std::string publicId = call.GetUriComponent("id", ""); |
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1504 const ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); |
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1505 |
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1506 std::string name = call.GetUriComponent("name", ""); |
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1507 MetadataType metadata = StringToMetadata(name); |
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|
1508 |
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1509 std::string value; |
4623
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1510 int64_t revision; |
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1511 if (OrthancRestApi::GetIndex(call).LookupMetadata(value, revision, publicId, level, metadata)) |
751
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1512 { |
4623
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1513 call.GetOutput().GetLowLevelOutput(). |
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1514 AddHeader("ETag", "\"" + boost::lexical_cast<std::string>(revision) + "\""); // New in Orthanc 1.9.2 |
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1515 |
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1516 int64_t userRevision; |
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1517 if (GetRevisionHeader(userRevision, call, "If-None-Match") && |
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1518 revision == userRevision) |
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|
1519 { |
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1520 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
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1521 } |
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|
1522 else |
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|
1523 { |
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|
1524 call.GetOutput().AnswerBuffer(value, MimeType_PlainText); |
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1525 } |
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1526 } |
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1527 } |
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|
1528 |
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1529 |
974 | 1530 static void DeleteMetadata(RestApiDeleteCall& call) |
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1531 { |
4414 | 1532 if (call.IsDocumentation()) |
1533 { | |
1534 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1535 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1536 call.GetDocumentation() | |
1537 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1538 .SetSummary("Delete metadata") | |
1539 .SetDescription("Delete some metadata associated with the given DICOM " + r + | |
1540 ". This call will fail if trying to delete a system metadata (i.e. whose index is < 1024).") | |
1541 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
4623
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1542 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") |
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1543 .SetHttpHeader("If-Match", "Revision of the metadata, to check if its content has not changed and can " |
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1544 "be deleted. This option is mandatory if `CheckRevision` option is `true`."); |
4414 | 1545 return; |
1546 } | |
1547 | |
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1548 CheckValidResourceType(call); |
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1549 const std::string publicId = call.GetUriComponent("id", ""); |
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1550 |
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1551 std::string name = call.GetUriComponent("name", ""); |
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1552 MetadataType metadata = StringToMetadata(name); |
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1553 |
1773
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1554 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
4623
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1555 { |
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1556 bool found; |
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1557 int64_t revision; |
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1558 if (GetRevisionHeader(revision, call, "if-match")) |
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1559 { |
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1560 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, true, revision); |
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1561 } |
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1562 else |
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1563 { |
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|
1564 OrthancConfiguration::ReaderLock lock; |
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1565 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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1566 { |
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1567 throw OrthancException(ErrorCode_Revision, |
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1568 "HTTP header \"If-Match\" is missing, as \"CheckRevision\" is \"true\""); |
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1569 } |
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1570 else |
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1571 { |
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1572 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, false, -1 /* dummy value */); |
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1573 } |
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|
1574 } |
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|
1575 |
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|
1576 if (found) |
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|
1577 { |
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|
1578 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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|
1579 } |
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|
1580 else |
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|
1581 { |
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1582 throw OrthancException(ErrorCode_UnknownResource); |
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1583 } |
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|
1584 } |
2128
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|
1585 else |
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|
1586 { |
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|
1587 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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|
1588 } |
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|
1589 } |
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|
1590 |
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|
1591 |
974 | 1592 static void SetMetadata(RestApiPutCall& call) |
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1593 { |
4414 | 1594 if (call.IsDocumentation()) |
1595 { | |
1596 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1597 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1598 call.GetDocumentation() | |
1599 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1600 .SetSummary("Set metadata") | |
1601 .SetDescription("Set the value of some metadata in the given DICOM " + r + | |
1602 ". This call will fail if trying to modify a system metadata (i.e. whose index is < 1024).") | |
1603 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
1604 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
4623
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1605 .AddRequestType(MimeType_PlainText, "String value of the metadata") |
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1606 .SetHttpHeader("If-Match", "Revision of the metadata, if this is not the first time this metadata is set."); |
4414 | 1607 return; |
1608 } | |
1609 | |
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|
1610 CheckValidResourceType(call); |
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1611 |
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1612 std::string publicId = call.GetUriComponent("id", ""); |
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1613 std::string name = call.GetUriComponent("name", ""); |
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|
1614 MetadataType metadata = StringToMetadata(name); |
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|
1615 |
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|
1616 std::string value; |
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|
1617 call.BodyToString(value); |
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1618 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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1619 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
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1620 { |
4623
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1621 int64_t oldRevision; |
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1622 bool hasOldRevision = GetRevisionHeader(oldRevision, call, "if-match"); |
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1623 |
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1624 if (!hasOldRevision) |
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1625 { |
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1626 OrthancConfiguration::ReaderLock lock; |
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1627 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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|
1628 { |
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|
1629 // "StatelessDatabaseOperations::SetMetadata()" will ignore |
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|
1630 // the actual value of "oldRevision" if the metadata is |
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|
1631 // inexistent as expected |
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|
1632 hasOldRevision = true; |
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1633 oldRevision = -1; // dummy value |
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|
1634 } |
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|
1635 } |
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|
1636 |
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|
1637 int64_t newRevision; |
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|
1638 OrthancRestApi::GetIndex(call).SetMetadata(newRevision, publicId, metadata, value, hasOldRevision, oldRevision); |
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|
1639 |
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|
1640 call.GetOutput().GetLowLevelOutput(). |
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|
1641 AddHeader("ETag", "\"" + boost::lexical_cast<std::string>(newRevision) + "\""); // New in Orthanc 1.9.2 |
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|
1642 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
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2905
diff
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|
1643 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1644 } |
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|
1645 else |
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|
1646 { |
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|
1647 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
9329ba17a069
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|
1648 } |
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|
1649 } |
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diff
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|
1650 |
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diff
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|
1651 |
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diff
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|
1652 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1653 |
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|
1654 // Handling of attached files ----------------------------------------------- |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1655 |
974 | 1656 static void ListAttachments(RestApiGetCall& call) |
751
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parents:
diff
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|
1657 { |
4409 | 1658 if (call.IsDocumentation()) |
1659 { | |
1660 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1661 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1662 call.GetDocumentation() | |
1663 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1664 .SetSummary("List attachments") | |
1665 .SetDescription("Get the list of attachments that are associated with the given " + r) | |
1666 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
1667 .AddAnswerType(MimeType_Json, "JSON array containing the names of the attachments") | |
1668 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/attachments", true); | |
1669 return; | |
1670 } | |
1671 | |
1672 const std::string resourceType = call.GetFullUri() [0]; | |
1673 const std::string publicId = call.GetUriComponent("id", ""); | |
4514
5b929e6b3c36
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diff
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|
1674 std::set<FileContentType> attachments; |
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diff
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|
1675 OrthancRestApi::GetIndex(call).ListAvailableAttachments(attachments, publicId, StringToResourceType(resourceType.c_str())); |
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|
1676 |
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|
1677 Json::Value result = Json::arrayValue; |
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diff
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|
1678 |
4514
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4513
diff
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|
1679 for (std::set<FileContentType>::const_iterator |
751
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|
1680 it = attachments.begin(); it != attachments.end(); ++it) |
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|
1681 { |
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|
1682 result.append(EnumerationToString(*it)); |
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|
1683 } |
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|
1684 |
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1685 call.GetOutput().AnswerJson(result); |
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|
1686 } |
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|
1687 |
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1688 |
974 | 1689 static bool GetAttachmentInfo(FileInfo& info, RestApiCall& call) |
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1690 { |
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1691 CheckValidResourceType(call); |
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|
1692 |
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1693 std::string publicId = call.GetUriComponent("id", ""); |
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1694 std::string name = call.GetUriComponent("name", ""); |
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1695 FileContentType contentType = StringToContentType(name); |
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1696 |
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1697 return OrthancRestApi::GetIndex(call).LookupAttachment(info, publicId, contentType); |
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1698 } |
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|
1699 |
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|
1700 |
974 | 1701 static void GetAttachmentOperations(RestApiGetCall& call) |
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1702 { |
4409 | 1703 if (call.IsDocumentation()) |
1704 { | |
1705 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1706 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1707 call.GetDocumentation() | |
1708 .SetTag("Other") | |
4414 | 1709 .SetSummary("List operations on attachments") |
1710 .SetDescription("Get the list of the operations that are available for attachments associated with the given " + r) | |
4409 | 1711 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
4414 | 1712 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4409 | 1713 .AddAnswerType(MimeType_Json, "List of the available operations") |
1714 .SetHttpGetSample("https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2/attachments/dicom", true); | |
1715 return; | |
1716 } | |
1717 | |
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1718 FileInfo info; |
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1719 if (GetAttachmentInfo(info, call)) |
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1720 { |
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1721 Json::Value operations = Json::arrayValue; |
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1722 |
1700
f5ddbd9239dd
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diff
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|
1723 operations.append("compress"); |
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1724 operations.append("compressed-data"); |
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1725 |
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1726 if (info.GetCompressedMD5() != "") |
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|
1727 { |
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1728 operations.append("compressed-md5"); |
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1729 } |
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1730 |
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1731 operations.append("compressed-size"); |
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1732 operations.append("data"); |
1700
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1733 operations.append("is-compressed"); |
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1734 |
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1735 if (info.GetUncompressedMD5() != "") |
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1736 { |
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1737 operations.append("md5"); |
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1738 } |
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1739 |
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1740 operations.append("size"); |
1700
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1741 operations.append("uncompress"); |
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1742 |
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1743 if (info.GetCompressedMD5() != "" && |
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1744 info.GetUncompressedMD5() != "") |
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1745 { |
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1746 operations.append("verify-md5"); |
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1747 } |
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1748 |
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1749 call.GetOutput().AnswerJson(operations); |
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1750 } |
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1751 } |
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1752 |
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1753 |
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1754 template <int uncompress> |
974 | 1755 static void GetAttachmentData(RestApiGetCall& call) |
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1756 { |
4409 | 1757 if (call.IsDocumentation()) |
1758 { | |
1759 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1760 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1761 call.GetDocumentation() | |
1762 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1763 .SetSummary("Get attachment" + std::string(uncompress ? "" : " (no decompression)")) | |
1764 .SetDescription("Get the (binary) content of one attachment associated with the given " + r + | |
4418 | 1765 std::string(uncompress ? "" : ". The attachment will not be decompressed if `StorageCompression` is `true`.")) |
4409 | 1766 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
4414 | 1767 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4409 | 1768 .AddAnswerType(MimeType_Binary, "The attachment"); |
1769 return; | |
1770 } | |
1771 | |
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1772 ServerContext& context = OrthancRestApi::GetContext(call); |
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1773 |
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1774 CheckValidResourceType(call); |
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1775 |
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1776 std::string publicId = call.GetUriComponent("id", ""); |
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1777 FileContentType type = StringToContentType(call.GetUriComponent("name", "")); |
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1778 |
1146
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1779 if (uncompress) |
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1780 { |
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1781 context.AnswerAttachment(call.GetOutput(), publicId, type); |
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1782 } |
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1783 else |
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1784 { |
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1785 // Return the raw data (possibly compressed), as stored on the filesystem |
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1786 std::string content; |
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1787 context.ReadAttachment(content, publicId, type, false); |
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1788 call.GetOutput().AnswerBuffer(content, MimeType_Binary); |
1146
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1789 } |
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1790 } |
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1791 |
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1792 |
974 | 1793 static void GetAttachmentSize(RestApiGetCall& call) |
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1794 { |
4409 | 1795 if (call.IsDocumentation()) |
1796 { | |
1797 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1798 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1799 call.GetDocumentation() | |
1800 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1801 .SetSummary("Get size of attachment") | |
1802 .SetDescription("Get the size of one attachment associated with the given " + r) | |
1803 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
4414 | 1804 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4409 | 1805 .AddAnswerType(MimeType_PlainText, "The size of the attachment"); |
1806 return; | |
1807 } | |
1808 | |
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1809 FileInfo info; |
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1810 if (GetAttachmentInfo(info, call)) |
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1811 { |
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1812 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedSize()), MimeType_PlainText); |
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1813 } |
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1814 } |
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1815 |
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1816 |
974 | 1817 static void GetAttachmentCompressedSize(RestApiGetCall& call) |
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1818 { |
4409 | 1819 if (call.IsDocumentation()) |
1820 { | |
1821 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1822 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1823 call.GetDocumentation() | |
1824 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
4410 | 1825 .SetSummary("Get size of attachment on disk") |
4409 | 1826 .SetDescription("Get the size of one attachment associated with the given " + r + ", as stored on the disk. " |
4413 | 1827 "This is different from `.../size` iff `EnableStorage` is `true`.") |
4409 | 1828 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
4414 | 1829 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4410 | 1830 .AddAnswerType(MimeType_PlainText, "The size of the attachment, as stored on the disk"); |
4409 | 1831 return; |
1832 } | |
1833 | |
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1834 FileInfo info; |
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1835 if (GetAttachmentInfo(info, call)) |
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1836 { |
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1837 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedSize()), MimeType_PlainText); |
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1838 } |
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1839 } |
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1840 |
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1841 |
974 | 1842 static void GetAttachmentMD5(RestApiGetCall& call) |
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1843 { |
4410 | 1844 if (call.IsDocumentation()) |
1845 { | |
1846 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1847 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1848 call.GetDocumentation() | |
1849 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1850 .SetSummary("Get MD5 of attachment") | |
1851 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r) | |
1852 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
4414 | 1853 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4410 | 1854 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment"); |
1855 return; | |
1856 } | |
1857 | |
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1858 FileInfo info; |
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1859 if (GetAttachmentInfo(info, call) && |
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1860 info.GetUncompressedMD5() != "") |
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1861 { |
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1862 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedMD5()), MimeType_PlainText); |
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1863 } |
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1864 } |
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1865 |
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1866 |
974 | 1867 static void GetAttachmentCompressedMD5(RestApiGetCall& call) |
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1868 { |
4410 | 1869 if (call.IsDocumentation()) |
1870 { | |
1871 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1872 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1873 call.GetDocumentation() | |
1874 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1875 .SetSummary("Get MD5 of attachment on disk") | |
1876 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r + ", as stored on the disk. " | |
4413 | 1877 "This is different from `.../md5` iff `EnableStorage` is `true`.") |
4410 | 1878 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
4414 | 1879 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4410 | 1880 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment, as stored on the disk"); |
1881 return; | |
1882 } | |
1883 | |
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1884 FileInfo info; |
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1885 if (GetAttachmentInfo(info, call) && |
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1886 info.GetCompressedMD5() != "") |
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1887 { |
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1888 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedMD5()), MimeType_PlainText); |
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1889 } |
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1890 } |
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1891 |
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1892 |
974 | 1893 static void VerifyAttachment(RestApiPostCall& call) |
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1894 { |
4410 | 1895 if (call.IsDocumentation()) |
1896 { | |
1897 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1898 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1899 call.GetDocumentation() | |
1900 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1901 .SetSummary("Verify attachment") | |
1902 .SetDescription("Verify that the attachment is not corrupted, by validating its MD5 hash") | |
1903 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
4414 | 1904 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4410 | 1905 .AddAnswerType(MimeType_Json, "On success, a valid JSON object is returned"); |
1906 return; | |
1907 } | |
1908 | |
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1909 ServerContext& context = OrthancRestApi::GetContext(call); |
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1910 CheckValidResourceType(call); |
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1911 |
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1912 std::string publicId = call.GetUriComponent("id", ""); |
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1913 std::string name = call.GetUriComponent("name", ""); |
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|
1914 |
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1915 FileInfo info; |
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1916 if (!GetAttachmentInfo(info, call) || |
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1917 info.GetCompressedMD5() == "" || |
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1918 info.GetUncompressedMD5() == "") |
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1919 { |
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1920 // Inexistent resource, or no MD5 available |
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1921 return; |
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|
1922 } |
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diff
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|
1923 |
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1924 bool ok = false; |
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|
1925 |
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1926 // First check whether the compressed data is correctly stored in the disk |
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1927 std::string data; |
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1928 context.ReadAttachment(data, publicId, StringToContentType(name), false); |
751
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1929 |
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1930 std::string actualMD5; |
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1931 Toolbox::ComputeMD5(actualMD5, data); |
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1932 |
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1933 if (actualMD5 == info.GetCompressedMD5()) |
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1934 { |
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1935 // The compressed data is OK. If a compression algorithm was |
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1936 // applied to it, now check the MD5 of the uncompressed data. |
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1937 if (info.GetCompressionType() == CompressionType_None) |
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1938 { |
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1939 ok = true; |
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|
1940 } |
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|
1941 else |
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|
1942 { |
2128
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1943 context.ReadAttachment(data, publicId, StringToContentType(name), true); |
751
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1944 Toolbox::ComputeMD5(actualMD5, data); |
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parents:
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|
1945 ok = (actualMD5 == info.GetUncompressedMD5()); |
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|
1946 } |
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|
1947 } |
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|
1948 |
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|
1949 if (ok) |
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parents:
diff
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|
1950 { |
4294
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Alain Mazy <alain@mazy.be>
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4272
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|
1951 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has the right MD5"; |
2908
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new enumeration: MimeType
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|
1952 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
751
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1953 } |
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|
1954 else |
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diff
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|
1955 { |
4294
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4272
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|
1956 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has bad MD5!"; |
751
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|
1957 } |
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|
1958 } |
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|
1959 |
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|
1960 |
974 | 1961 static void UploadAttachment(RestApiPutCall& call) |
751
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|
1962 { |
4414 | 1963 if (call.IsDocumentation()) |
1964 { | |
1965 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
1966 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
1967 call.GetDocumentation() | |
1968 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
1969 .SetSummary("Set attachment") | |
1970 .SetDescription("Attach a file to the given DICOM " + r + | |
1971 ". This call will fail if trying to modify a system attachment (i.e. whose index is < 1024).") | |
1972 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
1973 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") | |
1974 .AddRequestType(MimeType_Binary, "Binary data containing the attachment") | |
1975 .AddAnswerType(MimeType_Json, "Empty JSON object in the case of a success"); | |
1976 return; | |
1977 } | |
1978 | |
751
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|
1979 ServerContext& context = OrthancRestApi::GetContext(call); |
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diff
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|
1980 CheckValidResourceType(call); |
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diff
changeset
|
1981 |
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|
1982 std::string publicId = call.GetUriComponent("id", ""); |
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diff
changeset
|
1983 std::string name = call.GetUriComponent("name", ""); |
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diff
changeset
|
1984 |
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diff
changeset
|
1985 FileContentType contentType = StringToContentType(name); |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1759
diff
changeset
|
1986 if (IsUserContentType(contentType) && // It is forbidden to modify internal attachments |
1446
8dc80ba768aa
refactoring: IHttpHandler does not use std::string to hold the request body
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1437
diff
changeset
|
1987 context.AddAttachment(publicId, StringToContentType(name), call.GetBodyData(), call.GetBodySize())) |
751
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parents:
diff
changeset
|
1988 { |
2908
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new enumeration: MimeType
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parents:
2905
diff
changeset
|
1989 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
751
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parents:
diff
changeset
|
1990 } |
2128
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diff
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|
1991 else |
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diff
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|
1992 { |
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2127
diff
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|
1993 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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parents:
2127
diff
changeset
|
1994 } |
751
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parents:
diff
changeset
|
1995 } |
5197fd35333c
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parents:
diff
changeset
|
1996 |
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diff
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|
1997 |
974 | 1998 static void DeleteAttachment(RestApiDeleteCall& call) |
751
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parents:
diff
changeset
|
1999 { |
4413 | 2000 if (call.IsDocumentation()) |
2001 { | |
2002 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
2003 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
2004 call.GetDocumentation() | |
2005 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
2006 .SetSummary("Delete attachment") | |
4414 | 2007 .SetDescription("Delete an attachment associated with the given DICOM " + r + |
2008 ". This call will fail if trying to delete a system attachment (i.e. whose index is < 1024).") | |
4413 | 2009 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
4414 | 2010 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
4413 | 2011 return; |
2012 } | |
2013 | |
751
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parents:
diff
changeset
|
2014 CheckValidResourceType(call); |
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parents:
diff
changeset
|
2015 |
5197fd35333c
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parents:
diff
changeset
|
2016 std::string publicId = call.GetUriComponent("id", ""); |
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parents:
diff
changeset
|
2017 std::string name = call.GetUriComponent("name", ""); |
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parents:
diff
changeset
|
2018 FileContentType contentType = StringToContentType(name); |
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parents:
diff
changeset
|
2019 |
2128
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2127
diff
changeset
|
2020 bool allowed; |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
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|
2021 if (IsUserContentType(contentType)) |
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diff
changeset
|
2022 { |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
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|
2023 allowed = true; |
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diff
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|
2024 } |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
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|
2025 else |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
changeset
|
2026 { |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2027 OrthancConfiguration::ReaderLock lock; |
4767d36679ed
refactoring access to Orthanc configuration
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2935
diff
changeset
|
2028 |
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parents:
2935
diff
changeset
|
2029 if (lock.GetConfiguration().GetBooleanParameter("StoreDicom", true) && |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2935
diff
changeset
|
2030 contentType == FileContentType_DicomAsJson) |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2935
diff
changeset
|
2031 { |
4767d36679ed
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parents:
2935
diff
changeset
|
2032 allowed = true; |
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parents:
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diff
changeset
|
2033 } |
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parents:
2935
diff
changeset
|
2034 else |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2935
diff
changeset
|
2035 { |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2935
diff
changeset
|
2036 // It is forbidden to delete internal attachments, except for |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2037 // the "DICOM as JSON" summary as of Orthanc 1.2.0 (this summary |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2038 // would be automatically reconstructed on the next GET call) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2039 allowed = false; |
4767d36679ed
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2935
diff
changeset
|
2040 } |
2128
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diff
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|
2041 } |
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2127
diff
changeset
|
2042 |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
2043 if (allowed) |
751
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diff
changeset
|
2044 { |
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parents:
diff
changeset
|
2045 OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType); |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2046 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
751
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2047 } |
2128
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diff
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|
2048 else |
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2127
diff
changeset
|
2049 { |
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2127
diff
changeset
|
2050 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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2127
diff
changeset
|
2051 } |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2052 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2053 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2054 |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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2055 template <enum CompressionType compression> |
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2056 static void ChangeAttachmentCompression(RestApiPostCall& call) |
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2057 { |
4413 | 2058 if (call.IsDocumentation()) |
2059 { | |
2060 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
2061 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
2062 call.GetDocumentation() | |
2063 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
2064 .SetSummary(compression == CompressionType_None ? "Uncompress attachment" : "Compress attachment") | |
2065 .SetDescription("Change the compression scheme that is used to store an attachment.") | |
2066 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
4414 | 2067 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
4413 | 2068 return; |
2069 } | |
2070 | |
1700
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2071 CheckValidResourceType(call); |
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2072 |
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2073 std::string publicId = call.GetUriComponent("id", ""); |
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2074 std::string name = call.GetUriComponent("name", ""); |
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2075 FileContentType contentType = StringToContentType(name); |
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2076 |
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2077 OrthancRestApi::GetContext(call).ChangeAttachmentCompression(publicId, contentType, compression); |
2908
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2078 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
1700
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2079 } |
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2080 |
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2081 |
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2082 static void IsAttachmentCompressed(RestApiGetCall& call) |
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2083 { |
4413 | 2084 if (call.IsDocumentation()) |
2085 { | |
2086 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
2087 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
2088 call.GetDocumentation() | |
2089 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
2090 .SetSummary("Is attachment compressed?") | |
2091 .SetDescription("Test whether the attachment has been stored as a compressed file on the disk.") | |
2092 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
4414 | 2093 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
4413 | 2094 .AddAnswerType(MimeType_PlainText, "`0` if the attachment was stored uncompressed, `1` if it was compressed"); |
2095 return; | |
2096 } | |
2097 | |
1700
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2098 FileInfo info; |
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2099 if (GetAttachmentInfo(info, call)) |
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2100 { |
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|
2101 std::string answer = (info.GetCompressionType() == CompressionType_None) ? "0" : "1"; |
2908
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2102 call.GetOutput().AnswerBuffer(answer, MimeType_PlainText); |
1700
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2103 } |
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2104 } |
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2105 |
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2106 |
782 | 2107 // Raw access to the DICOM tags of an instance ------------------------------ |
2108 | |
974 | 2109 static void GetRawContent(RestApiGetCall& call) |
782 | 2110 { |
4405
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|
2111 if (call.IsDocumentation()) |
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|
2112 { |
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|
2113 call.GetDocumentation() |
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2114 .SetTag("Instances") |
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2115 .SetSummary("Get raw tag") |
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|
2116 .SetDescription("Get the raw content of one DICOM tag in the hierarchy of DICOM dataset") |
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2117 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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2118 .SetUriArgument("...", "Path to the DICOM tag. This is the interleaving of one DICOM tag, possibly followed " |
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|
2119 "by an index for sequences. Sequences are accessible as, for instance, `/0008-1140/1/0008-1150`") |
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2120 .AddAnswerType(MimeType_Binary, "The raw value of the tag of intereset " |
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|
2121 "(binary data, whose memory layout depends on the underlying transfer syntax), " |
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|
2122 "or JSON array containing the list of available tags if accessing a dataset"); |
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|
2123 return; |
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|
2124 } |
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|
2125 |
782 | 2126 std::string id = call.GetUriComponent("id", ""); |
2127 | |
2128 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); | |
2129 | |
2130 locker.GetDicom().SendPathValue(call.GetOutput(), call.GetTrailingUri()); | |
2131 } | |
2132 | |
751
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refactoring of OrthancRestApi
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|
2133 |
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|
2134 |
960
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|
2135 static bool ExtractSharedTags(Json::Value& shared, |
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|
2136 ServerContext& context, |
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diff
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|
2137 const std::string& publicId) |
958
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|
2138 { |
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|
2139 // Retrieve all the instances of this patient/study/series |
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|
2140 typedef std::list<std::string> Instances; |
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|
2141 Instances instances; |
959
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diff
changeset
|
2142 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
958
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diff
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|
2143 |
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2144 // Loop over the instances |
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diff
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|
2145 bool isFirst = true; |
960
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diff
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|
2146 shared = Json::objectValue; |
958
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diff
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|
2147 |
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|
2148 for (Instances::const_iterator it = instances.begin(); |
1303 | 2149 it != instances.end(); ++it) |
958
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|
2150 { |
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|
2151 // Get the tags of the current instance, in the simplified format |
960
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|
2152 Json::Value tags; |
959
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diff
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|
2153 |
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diff
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|
2154 try |
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|
2155 { |
2124 | 2156 context.ReadDicomAsJson(tags, *it); |
959
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|
2157 } |
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|
2158 catch (OrthancException&) |
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diff
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|
2159 { |
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|
2160 // Race condition: This instance has been removed since |
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|
2161 // (*). Ignore this instance. |
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|
2162 continue; |
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|
2163 } |
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|
2164 |
960
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|
2165 if (tags.type() != Json::objectValue) |
958
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|
2166 { |
960
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|
2167 return false; // Error |
958
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|
2168 } |
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|
2169 |
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|
2170 // Only keep the tags that are mapped to a string |
960
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|
2171 Json::Value::Members members = tags.getMemberNames(); |
958
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2172 for (size_t i = 0; i < members.size(); i++) |
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2173 { |
960
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2174 const Json::Value& tag = tags[members[i]]; |
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|
2175 if (tag.type() != Json::objectValue || |
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|
2176 tag["Type"].type() != Json::stringValue || |
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changeset
|
2177 tag["Type"].asString() != "String") |
958
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|
2178 { |
960
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|
2179 tags.removeMember(members[i]); |
958
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|
2180 } |
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|
2181 } |
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|
2182 |
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|
2183 if (isFirst) |
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|
2184 { |
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2185 // This is the first instance, keep its tags as such |
960
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|
2186 shared = tags; |
958
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|
2187 isFirst = false; |
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|
2188 } |
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|
2189 else |
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changeset
|
2190 { |
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|
2191 // Loop over all the members of the shared tags extracted so |
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|
2192 // far. If the value of one of these tags does not match its |
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|
2193 // value in the current instance, remove it. |
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|
2194 members = shared.getMemberNames(); |
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2195 for (size_t i = 0; i < members.size(); i++) |
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|
2196 { |
960
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2197 if (!tags.isMember(members[i]) || |
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2198 tags[members[i]]["Value"].asString() != shared[members[i]]["Value"].asString()) |
958
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2199 { |
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2200 shared.removeMember(members[i]); |
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2201 } |
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diff
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|
2202 } |
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2203 } |
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2204 } |
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2205 |
960
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2206 return true; |
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2207 } |
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2208 |
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2209 |
974 | 2210 static void GetSharedTags(RestApiGetCall& call) |
960
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2211 { |
4416
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2212 if (call.IsDocumentation()) |
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2213 { |
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2214 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
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2215 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
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2216 call.GetDocumentation() |
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2217 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
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2218 .SetSummary("Get shared tags") |
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2219 .SetDescription("Extract the DICOM tags whose value is constant across all the child instances of " |
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2220 "the DICOM " + r + " whose Orthanc identifier is provided in the URL") |
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2221 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
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2222 .AddAnswerType(MimeType_Json, "JSON object containing the values of the DICOM tags") |
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2223 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/shared-tags", 5); |
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2224 return; |
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2225 } |
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2226 |
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2227 ServerContext& context = OrthancRestApi::GetContext(call); |
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2228 std::string publicId = call.GetUriComponent("id", ""); |
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2229 |
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2230 Json::Value sharedTags; |
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2231 if (ExtractSharedTags(sharedTags, context, publicId)) |
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2232 { |
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2233 // Success: Send the value of the shared tags |
2622
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2234 AnswerDicomAsJson(call, sharedTags); |
960
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2235 } |
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2236 } |
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2237 |
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2238 |
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2239 static void GetModuleInternal(RestApiGetCall& call, |
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2240 ResourceType resourceType, |
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2241 DicomModule module) |
963
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2242 { |
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2243 if (!((resourceType == ResourceType_Patient && module == DicomModule_Patient) || |
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2244 (resourceType == ResourceType_Study && module == DicomModule_Patient) || |
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2245 (resourceType == ResourceType_Study && module == DicomModule_Study) || |
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2246 (resourceType == ResourceType_Series && module == DicomModule_Series) || |
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2247 (resourceType == ResourceType_Instance && module == DicomModule_Instance) || |
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2248 (resourceType == ResourceType_Instance && module == DicomModule_Image))) |
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2249 { |
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2250 throw OrthancException(ErrorCode_NotImplemented); |
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2251 } |
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2252 |
963
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2253 ServerContext& context = OrthancRestApi::GetContext(call); |
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2254 std::string publicId = call.GetUriComponent("id", ""); |
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2255 |
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2256 std::set<DicomTag> ignoreTagLength; |
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2257 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
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2258 |
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2259 typedef std::set<DicomTag> ModuleTags; |
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2260 ModuleTags moduleTags; |
1368 | 2261 DicomTag::AddTagsForModule(moduleTags, module); |
963
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2262 |
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2263 Json::Value tags; |
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2264 |
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2265 if (resourceType != ResourceType_Instance) |
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2266 { |
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2267 // Retrieve all the instances of this patient/study/series |
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2268 typedef std::list<std::string> Instances; |
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2269 Instances instances; |
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2270 context.GetIndex().GetChildInstances(instances, publicId); |
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2271 |
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2272 if (instances.empty()) |
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2273 { |
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2274 return; // Error: No instance (should never happen) |
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2275 } |
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2276 |
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2277 // Select one child instance |
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2278 publicId = instances.front(); |
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2279 } |
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2280 |
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2281 context.ReadDicomAsJson(tags, publicId, ignoreTagLength); |
963
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2282 |
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2283 // Filter the tags of the instance according to the module |
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2284 Json::Value result = Json::objectValue; |
1303 | 2285 for (ModuleTags::const_iterator tag = moduleTags.begin(); tag != moduleTags.end(); ++tag) |
963
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2286 { |
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2287 std::string s = tag->Format(); |
963
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2288 if (tags.isMember(s)) |
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2289 { |
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2290 result[s] = tags[s]; |
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2291 } |
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2292 } |
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2293 |
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2294 AnswerDicomAsJson(call, result); |
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2295 } |
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2296 |
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2297 |
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2298 |
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2299 template <enum ResourceType resourceType, |
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2300 enum DicomModule module> |
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2301 static void GetModule(RestApiGetCall& call) |
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2302 { |
4419 | 2303 if (call.IsDocumentation()) |
2304 { | |
2305 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); | |
2306 std::string m; | |
2307 switch (module) | |
2308 { | |
2309 case DicomModule_Patient: | |
2310 m = "patient"; | |
2311 break; | |
2312 case DicomModule_Study: | |
2313 m = "study"; | |
2314 break; | |
2315 case DicomModule_Series: | |
2316 m = "series"; | |
2317 break; | |
2318 case DicomModule_Instance: | |
2319 m = "instance"; | |
2320 break; | |
2321 default: | |
2322 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
2323 } | |
2324 call.GetDocumentation() | |
2325 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) | |
2326 .SetSummary("Get " + m + " module" + std::string(resource == m ? "" : " of " + resource)) | |
2327 .SetDescription("Get the " + m + " module of the DICOM " + resource + " whose Orthanc identifier is provided in the URL") | |
2328 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") | |
2329 .SetHttpGetArgument("ignore-length", RestApiCallDocumentation::Type_JsonListOfStrings, | |
2330 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) | |
2331 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) | |
2332 .SetHttpGetSample(GetDocumentationSampleResource(resourceType) + "/" + (*call.GetFullUri().rbegin()), true); | |
2333 return; | |
2334 } | |
2335 | |
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2336 GetModuleInternal(call, resourceType, module); |
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2337 } |
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2338 |
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2339 |
1722 | 2340 namespace |
2341 { | |
2342 typedef std::list< std::pair<ResourceType, std::string> > LookupResults; | |
2343 } | |
2344 | |
2345 | |
2346 static void AccumulateLookupResults(LookupResults& result, | |
1718
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2347 ServerIndex& index, |
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2348 const DicomTag& tag, |
1719
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2349 const std::string& value, |
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2350 ResourceType level) |
1718
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2351 { |
3034
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2352 std::vector<std::string> tmp; |
1728
4941494b5dd8
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|
2353 index.LookupIdentifierExact(tmp, level, tag, value); |
1719
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2354 |
3034
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2355 for (size_t i = 0; i < tmp.size(); i++) |
1719
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2356 { |
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2357 result.push_back(std::make_pair(level, tmp[i])); |
1719
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2358 } |
1718
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2359 } |
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2360 |
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2361 |
1139
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2362 static void Lookup(RestApiPostCall& call) |
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2363 { |
4422 | 2364 if (call.IsDocumentation()) |
2365 { | |
2366 call.GetDocumentation() | |
2367 .SetTag("System") | |
2368 .SetSummary("Look for DICOM identifiers") | |
2369 .SetDescription("This URI can be used to convert one DICOM identifier to a list of matching Orthanc resources") | |
2370 .AddRequestType(MimeType_PlainText, "The DICOM identifier of interest (i.e. the value of `PatientID`, " | |
2371 "`StudyInstanceUID`, `SeriesInstanceUID`, or `SOPInstanceUID`)") | |
2372 .AddAnswerType(MimeType_Json, "JSON array containing a list of matching Orthanc resources, each item in the " | |
2373 "list corresponding to a JSON object with the fields `Type`, `ID` and `Path` identifying one " | |
2374 "DICOM resource that is stored by Orthanc"); | |
2375 return; | |
2376 } | |
2377 | |
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2378 std::string tag; |
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2379 call.BodyToString(tag); |
1139
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2380 |
1722 | 2381 LookupResults resources; |
1718
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2382 ServerIndex& index = OrthancRestApi::GetIndex(call); |
1719
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2383 AccumulateLookupResults(resources, index, DICOM_TAG_PATIENT_ID, tag, ResourceType_Patient); |
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2384 AccumulateLookupResults(resources, index, DICOM_TAG_STUDY_INSTANCE_UID, tag, ResourceType_Study); |
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2385 AccumulateLookupResults(resources, index, DICOM_TAG_SERIES_INSTANCE_UID, tag, ResourceType_Series); |
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2386 AccumulateLookupResults(resources, index, DICOM_TAG_SOP_INSTANCE_UID, tag, ResourceType_Instance); |
1718
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2387 |
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2388 Json::Value result = Json::arrayValue; |
1722 | 2389 for (LookupResults::const_iterator |
1718
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2390 it = resources.begin(); it != resources.end(); ++it) |
1139
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2391 { |
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2392 ResourceType type = it->first; |
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2393 const std::string& id = it->second; |
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2394 |
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2395 Json::Value item = Json::objectValue; |
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2396 item["Type"] = EnumerationToString(type); |
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2397 item["ID"] = id; |
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2398 item["Path"] = GetBasePath(type, id); |
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2399 |
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2400 result.append(item); |
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2401 } |
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2402 |
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2403 call.GetOutput().AnswerJson(result); |
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2404 } |
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2405 |
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2406 |
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2407 namespace |
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2408 { |
3021
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2409 class FindVisitor : public ServerContext::ILookupVisitor |
3001
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2410 { |
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2411 private: |
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2412 bool isComplete_; |
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2413 std::list<std::string> resources_; |
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2414 |
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2415 public: |
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2416 FindVisitor() : |
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2417 isComplete_(false) |
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2418 { |
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2419 } |
4205 | 2420 |
2421 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
3012
af1530b45290
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2422 { |
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2423 return false; // (*) |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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2424 } |
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2425 |
4205 | 2426 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
3001
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2427 { |
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2428 isComplete_ = true; // Unused information as of Orthanc 1.5.0 |
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refactoring /tools/find using LookupResource::IVisitor
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2429 } |
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2430 |
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refactoring /tools/find using LookupResource::IVisitor
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2431 virtual void Visit(const std::string& publicId, |
3012
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2432 const std::string& instanceId /* unused */, |
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|
2433 const DicomMap& mainDicomTags /* unused */, |
4205 | 2434 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE |
3001
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2435 { |
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2436 resources_.push_back(publicId); |
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2437 } |
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2438 |
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2439 void Answer(RestApiOutput& output, |
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2440 ServerIndex& index, |
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2441 ResourceType level, |
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2442 bool expand) const |
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2443 { |
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2444 AnswerListOfResources(output, index, resources_, level, expand); |
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2445 } |
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2446 }; |
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2447 } |
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2448 |
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2449 |
1354 | 2450 static void Find(RestApiPostCall& call) |
2451 { | |
2998 | 2452 static const char* const KEY_CASE_SENSITIVE = "CaseSensitive"; |
2453 static const char* const KEY_EXPAND = "Expand"; | |
2454 static const char* const KEY_LEVEL = "Level"; | |
2455 static const char* const KEY_LIMIT = "Limit"; | |
2456 static const char* const KEY_QUERY = "Query"; | |
2457 static const char* const KEY_SINCE = "Since"; | |
2458 | |
4421 | 2459 if (call.IsDocumentation()) |
2460 { | |
2461 call.GetDocumentation() | |
2462 .SetTag("System") | |
2463 .SetSummary("Look for local resources") | |
2464 .SetDescription("This URI can be used to perform a search on the content of the local Orthanc server, " | |
2465 "in a way that is similar to querying remote DICOM modalities using C-FIND SCU: " | |
2466 "https://book.orthanc-server.com/users/rest.html#performing-finds-within-orthanc") | |
2467 .SetRequestField(KEY_CASE_SENSITIVE, RestApiCallDocumentation::Type_Boolean, | |
2468 "Enable case-sensitive search for PN value representations (defaults to configuration option `CaseSensitivePN`)", false) | |
2469 .SetRequestField(KEY_EXPAND, RestApiCallDocumentation::Type_Boolean, | |
2470 "Also retrieve the content of the matching resources, not only their Orthanc identifiers", false) | |
2471 .SetRequestField(KEY_LEVEL, RestApiCallDocumentation::Type_String, | |
2472 "Level of the query (`Patient`, `Study`, `Series` or `Instance`)", true) | |
2473 .SetRequestField(KEY_LIMIT, RestApiCallDocumentation::Type_Number, | |
2474 "Limit the number of reported resources", false) | |
2475 .SetRequestField(KEY_SINCE, RestApiCallDocumentation::Type_Number, | |
2476 "Show only the resources since the provided index (in conjunction with `Limit`)", false) | |
2477 .SetRequestField(KEY_QUERY, RestApiCallDocumentation::Type_JsonObject, | |
2478 "Associative array containing the filter on the values of the DICOM tags", true) | |
2479 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " | |
2480 "about the reported resources (if `Expand` argument is `true`)"); | |
2481 return; | |
2482 } | |
2483 | |
1358 | 2484 ServerContext& context = OrthancRestApi::GetContext(call); |
1354 | 2485 |
2486 Json::Value request; | |
3001
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2487 if (!call.ParseJsonRequest(request) || |
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|
2488 request.type() != Json::objectValue) |
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2489 { |
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2490 throw OrthancException(ErrorCode_BadRequest, |
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|
2491 "The body must contain a JSON object"); |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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2998
diff
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|
2492 } |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2493 else if (!request.isMember(KEY_LEVEL) || |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2494 request[KEY_LEVEL].type() != Json::stringValue) |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
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|
2495 { |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2496 throw OrthancException(ErrorCode_BadRequest, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2497 "Field \"" + std::string(KEY_LEVEL) + "\" is missing, or should be a string"); |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2498 } |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2499 else if (!request.isMember(KEY_QUERY) && |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2500 request[KEY_QUERY].type() != Json::objectValue) |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
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|
2501 { |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2502 throw OrthancException(ErrorCode_BadRequest, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2503 "Field \"" + std::string(KEY_QUERY) + "\" is missing, or should be a JSON object"); |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
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|
2504 } |
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refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2505 else if (request.isMember(KEY_CASE_SENSITIVE) && |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2506 request[KEY_CASE_SENSITIVE].type() != Json::booleanValue) |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2507 { |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2508 throw OrthancException(ErrorCode_BadRequest, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2509 "Field \"" + std::string(KEY_CASE_SENSITIVE) + "\" should be a Boolean"); |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2510 } |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2511 else if (request.isMember(KEY_LIMIT) && |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2512 request[KEY_LIMIT].type() != Json::intValue) |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2513 { |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2514 throw OrthancException(ErrorCode_BadRequest, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2515 "Field \"" + std::string(KEY_LIMIT) + "\" should be an integer"); |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2516 } |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2517 else if (request.isMember(KEY_SINCE) && |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2518 request[KEY_SINCE].type() != Json::intValue) |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2519 { |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2520 throw OrthancException(ErrorCode_BadRequest, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2521 "Field \"" + std::string(KEY_SINCE) + "\" should be an integer"); |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2522 } |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2523 else |
1354 | 2524 { |
2525 bool expand = false; | |
2998 | 2526 if (request.isMember(KEY_EXPAND)) |
1354 | 2527 { |
2998 | 2528 expand = request[KEY_EXPAND].asBool(); |
1354 | 2529 } |
2530 | |
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2531 bool caseSensitive = false; |
2998 | 2532 if (request.isMember(KEY_CASE_SENSITIVE)) |
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2533 { |
2998 | 2534 caseSensitive = request[KEY_CASE_SENSITIVE].asBool(); |
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2535 } |
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
2536 |
1758 | 2537 size_t limit = 0; |
2998 | 2538 if (request.isMember(KEY_LIMIT)) |
1758 | 2539 { |
2998 | 2540 int tmp = request[KEY_LIMIT].asInt(); |
1847 | 2541 if (tmp < 0) |
1758 | 2542 { |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2543 throw OrthancException(ErrorCode_ParameterOutOfRange, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2544 "Field \"" + std::string(KEY_LIMIT) + "\" should be a positive integer"); |
1758 | 2545 } |
1847 | 2546 |
2547 limit = static_cast<size_t>(tmp); | |
1758 | 2548 } |
2549 | |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2550 size_t since = 0; |
2998 | 2551 if (request.isMember(KEY_SINCE)) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2552 { |
2998 | 2553 int tmp = request[KEY_SINCE].asInt(); |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2554 if (tmp < 0) |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2555 { |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2556 throw OrthancException(ErrorCode_ParameterOutOfRange, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2557 "Field \"" + std::string(KEY_SINCE) + "\" should be a positive integer"); |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2558 } |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2559 |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2560 since = static_cast<size_t>(tmp); |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2561 } |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2562 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2563 ResourceType level = StringToResourceType(request[KEY_LEVEL].asCString()); |
1360 | 2564 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
2565 DatabaseLookup query; |
1358 | 2566 |
2998 | 2567 Json::Value::Members members = request[KEY_QUERY].getMemberNames(); |
1354 | 2568 for (size_t i = 0; i < members.size(); i++) |
2569 { | |
2998 | 2570 if (request[KEY_QUERY][members[i]].type() != Json::stringValue) |
1354 | 2571 { |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2572 throw OrthancException(ErrorCode_BadRequest, |
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2573 "Tag \"" + members[i] + "\" should be associated with a string"); |
1354 | 2574 } |
2575 | |
3163
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2576 const std::string value = request[KEY_QUERY][members[i]].asString(); |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2577 |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2578 if (!value.empty()) |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2579 { |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2580 // An empty string corresponds to an universal constraint, |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2581 // so we ignore it. This mimics the behavior of class |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2582 // "OrthancFindRequestHandler" |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
2583 query.AddRestConstraint(FromDcmtkBridge::ParseTag(members[i]), |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2584 value, caseSensitive, true); |
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2585 } |
1361
94ffb597d297
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1360
diff
changeset
|
2586 } |
2876 | 2587 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2588 FindVisitor visitor; |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
changeset
|
2589 context.Apply(visitor, query, level, since, limit); |
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
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3027
diff
changeset
|
2590 visitor.Answer(call.GetOutput(), context.GetIndex(), level, expand); |
1354 | 2591 } |
2592 } | |
2593 | |
2594 | |
1140
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
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2595 template <enum ResourceType start, |
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
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diff
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2596 enum ResourceType end> |
94c5f6623b3a
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diff
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2597 static void GetChildResources(RestApiGetCall& call) |
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diff
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2598 { |
4415 | 2599 if (call.IsDocumentation()) |
2600 { | |
2601 const std::string children = GetResourceTypeText(end, true /* plural */, false /* lower case */); | |
2602 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
2603 call.GetDocumentation() | |
2604 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
2605 .SetSummary("Get child " + children) | |
2606 .SetDescription("Get detailed information about the child " + children + " of the DICOM " + | |
4416
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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4415
diff
changeset
|
2607 resource + " whose Orthanc identifier is provided in the URL") |
4415 | 2608 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
2609 .AddAnswerType(MimeType_Json, "JSON array containing information about the child DICOM " + children) | |
2610 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + children, 5); | |
2611 return; | |
2612 } | |
2613 | |
1140
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2614 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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2615 |
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2616 std::list<std::string> a, b, c; |
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2617 a.push_back(call.GetUriComponent("id", "")); |
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URIs to get all the children of a given resource in a single REST call
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2618 |
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2619 ResourceType type = start; |
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2620 while (type != end) |
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2621 { |
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changeset
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2622 b.clear(); |
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changeset
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2623 |
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diff
changeset
|
2624 for (std::list<std::string>::const_iterator |
1303 | 2625 it = a.begin(); it != a.end(); ++it) |
1140
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2626 { |
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parents:
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diff
changeset
|
2627 index.GetChildren(c, *it); |
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diff
changeset
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2628 b.splice(b.begin(), c); |
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2629 } |
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2630 |
1555
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diff
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2631 type = GetChildResourceType(type); |
1140
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2632 |
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2633 a.clear(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2634 a.splice(a.begin(), b); |
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|
2635 } |
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diff
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|
2636 |
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diff
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|
2637 Json::Value result = Json::arrayValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2638 |
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diff
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2639 for (std::list<std::string>::const_iterator |
1303 | 2640 it = a.begin(); it != a.end(); ++it) |
1140
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diff
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|
2641 { |
4554 | 2642 Json::Value resource; |
2643 if (OrthancRestApi::GetIndex(call).ExpandResource(resource, *it, end)) | |
1140
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diff
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|
2644 { |
4554 | 2645 result.append(resource); |
1140
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|
2646 } |
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|
2647 } |
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2648 |
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diff
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|
2649 call.GetOutput().AnswerJson(result); |
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|
2650 } |
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diff
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|
2651 |
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|
2652 |
1166
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2653 static void GetChildInstancesTags(RestApiGetCall& call) |
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2654 { |
4416
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diff
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|
2655 if (call.IsDocumentation()) |
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|
2656 { |
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diff
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|
2657 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
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diff
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|
2658 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
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diff
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|
2659 call.GetDocumentation() |
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|
2660 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
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2661 .SetSummary("Get tags of instances") |
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2662 .SetDescription("Get the tags of all the child instances of the DICOM " + r + |
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2663 " whose Orthanc identifier is provided in the URL") |
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2664 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
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2665 .SetHttpGetArgument("ignore-length", RestApiCallDocumentation::Type_JsonListOfStrings, |
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diff
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|
2666 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
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2667 .AddAnswerType(MimeType_Json, "JSON object associating the Orthanc identifiers of the instances, with the values of their DICOM tags") |
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2668 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/instances-tags", 5); |
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|
2669 return; |
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|
2670 } |
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|
2671 |
1166
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2672 ServerContext& context = OrthancRestApi::GetContext(call); |
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diff
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|
2673 std::string publicId = call.GetUriComponent("id", ""); |
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2674 DicomToJsonFormat format = GetDicomFormat(call); |
1166
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|
2675 |
2409
e4045b3c9772
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Sebastien Jodogne <s.jodogne@gmail.com>
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2408
diff
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|
2676 std::set<DicomTag> ignoreTagLength; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2677 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2678 |
1166
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2679 // Retrieve all the instances of this patient/study/series |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2680 typedef std::list<std::string> Instances; |
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|
2681 Instances instances; |
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|
2682 |
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diff
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|
2683 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
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diff
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|
2684 |
1201
09aa7c126be9
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Sebastien Jodogne <s.jodogne@gmail.com>
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1172
diff
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|
2685 Json::Value result = Json::objectValue; |
1166
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|
2686 |
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diff
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|
2687 for (Instances::const_iterator it = instances.begin(); |
1303 | 2688 it != instances.end(); ++it) |
1166
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|
2689 { |
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diff
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|
2690 Json::Value full; |
2409
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2691 context.ReadDicomAsJson(full, *it, ignoreTagLength); |
1166
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2692 |
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
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2447
diff
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|
2693 if (format != DicomToJsonFormat_Full) |
1166
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|
2694 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2695 Json::Value simplified; |
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
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4045
diff
changeset
|
2696 Toolbox::SimplifyDicomAsJson(simplified, full, format); |
1201
09aa7c126be9
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Sebastien Jodogne <s.jodogne@gmail.com>
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1172
diff
changeset
|
2697 result[*it] = simplified; |
1166
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|
2698 } |
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diff
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|
2699 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2700 { |
1201
09aa7c126be9
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Sebastien Jodogne <s.jodogne@gmail.com>
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1172
diff
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|
2701 result[*it] = full; |
1166
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diff
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|
2702 } |
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diff
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|
2703 } |
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|
2704 |
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diff
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|
2705 call.GetOutput().AnswerJson(result); |
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|
2706 } |
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|
2707 |
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diff
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|
2708 |
1140
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diff
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2709 |
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diff
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|
2710 template <enum ResourceType start, |
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diff
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|
2711 enum ResourceType end> |
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diff
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|
2712 static void GetParentResource(RestApiGetCall& call) |
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|
2713 { |
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diff
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|
2714 assert(start > end); |
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diff
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|
2715 |
4415 | 2716 if (call.IsDocumentation()) |
2717 { | |
2718 const std::string parent = GetResourceTypeText(end, false /* plural */, false /* lower case */); | |
2719 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
2720 call.GetDocumentation() | |
2721 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
2722 .SetSummary("Get parent " + parent) | |
2723 .SetDescription("Get detailed information about the parent " + parent + " of the DICOM " + | |
4416
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2724 resource + " whose Orthanc identifier is provided in the URL") |
4415 | 2725 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
2726 .AddAnswerType(MimeType_Json, "Information about the parent DICOM " + parent) | |
2727 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + parent, 10); | |
2728 return; | |
2729 } | |
2730 | |
1281
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2731 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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2732 |
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2733 std::string current = call.GetUriComponent("id", ""); |
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2734 ResourceType currentType = start; |
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2735 while (currentType > end) |
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2736 { |
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2737 std::string parent; |
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2738 if (!index.LookupParent(parent, current)) |
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2739 { |
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2740 // Error that could happen if the resource gets deleted by |
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2741 // another concurrent call |
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2742 return; |
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2743 } |
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2744 |
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2745 current = parent; |
1555
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2746 currentType = GetParentResourceType(currentType); |
1281
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2747 } |
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2748 |
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2749 assert(currentType == end); |
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2750 |
4554 | 2751 Json::Value resource; |
2752 if (OrthancRestApi::GetIndex(call).ExpandResource(resource, current, end)) | |
1281
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2753 { |
4554 | 2754 call.GetOutput().AnswerJson(resource); |
1281
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2755 } |
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|
2756 } |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2757 |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2758 |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2759 static void ExtractPdf(RestApiGetCall& call) |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2760 { |
4407 | 2761 if (call.IsDocumentation()) |
2762 { | |
2763 call.GetDocumentation() | |
2764 .SetTag("Instances") | |
2765 .SetSummary("Get embedded PDF") | |
2766 .SetDescription("Get the PDF file that is embedded in one DICOM instance. " | |
2767 "If the DICOM instance doesn't contain the `EncapsulatedDocument` tag or if the " | |
2768 "`MIMETypeOfEncapsulatedDocument` tag doesn't correspond to the PDF type, a `404` HTTP error is raised.") | |
2769 .SetUriArgument("id", "Orthanc identifier of the instance interest") | |
2770 .AddAnswerType(MimeType_Pdf, "PDF file"); | |
2771 return; | |
2772 } | |
2773 | |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2774 const std::string id = call.GetUriComponent("id", ""); |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2775 std::string pdf; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2776 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2777 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2778 if (locker.GetDicom().ExtractPdf(pdf)) |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2779 { |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2780 call.GetOutput().AnswerBuffer(pdf, MimeType_Pdf); |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2781 return; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2782 } |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2783 } |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2784 |
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2785 |
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2786 static void OrderSlices(RestApiGetCall& call) |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2787 { |
4421 | 2788 if (call.IsDocumentation()) |
2789 { | |
2790 call.GetDocumentation() | |
2791 .SetDeprecated() | |
2792 .SetTag("Series") | |
2793 .SetSummary("Order the slices") | |
2794 .SetDescription("Sort the instances and frames (slices) of the DICOM series whose Orthanc identifier is provided in the URL. " | |
2795 "This URI is essentially used by the Orthanc Web viewer and by the Osimis Web viewer.") | |
2796 .SetUriArgument("id", "Orthanc identifier of the series of interest") | |
2797 .SetAnswerField("Dicom", RestApiCallDocumentation::Type_JsonListOfStrings, | |
2798 "Ordered list of paths to DICOM instances") | |
2799 .SetAnswerField("Slices", RestApiCallDocumentation::Type_JsonListOfStrings, | |
2800 "Ordered list of paths to frames. It is recommended to use this field, as it is also valid " | |
2801 "in the case of multiframe images.") | |
2802 .SetAnswerField("SlicesShort", RestApiCallDocumentation::Type_JsonListOfObjects, | |
2803 "Same information as the `Slices` field, but in a compact form") | |
2804 .SetAnswerField("Type", RestApiCallDocumentation::Type_String, | |
2805 "Can be `Volume` (for 3D volumes) or `Sequence` (notably for cine images)") | |
2806 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/series/1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0/ordered-slices", 10); | |
2807 return; | |
2808 } | |
2809 | |
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2810 const std::string id = call.GetUriComponent("id", ""); |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2811 |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2812 ServerIndex& index = OrthancRestApi::GetIndex(call); |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2813 SliceOrdering ordering(index, id); |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2814 |
1703
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2815 Json::Value result; |
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2816 ordering.Format(result); |
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2817 call.GetOutput().AnswerJson(result); |
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2818 } |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2819 |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2820 |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2821 static void GetInstanceHeader(RestApiGetCall& call) |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2822 { |
4404 | 2823 if (call.IsDocumentation()) |
2824 { | |
2825 call.GetDocumentation() | |
2826 .SetTag("Instances") | |
2827 .SetSummary("Get DICOM meta-header") | |
2828 .SetDescription("Get the DICOM tags in the meta-header of the DICOM instance. By default, the `full` format is used, which " | |
2829 "combines hexadecimal tags with human-readable description.") | |
2830 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
2831 .SetHttpGetArgument("simplify", RestApiCallDocumentation::Type_String, | |
2832 "If present, report the DICOM tags in human-readable format", false) | |
2833 .SetHttpGetArgument("short", RestApiCallDocumentation::Type_String, | |
2834 "If present, report the DICOM tags indexed in hexadecimal format", false) | |
2835 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
2836 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/header", true); | |
2837 return; | |
2838 } | |
2839 | |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2840 ServerContext& context = OrthancRestApi::GetContext(call); |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2841 |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2842 std::string publicId = call.GetUriComponent("id", ""); |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2843 |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2844 std::string dicomContent; |
2124 | 2845 context.ReadDicom(dicomContent, publicId); |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2846 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2847 // TODO Consider using "DicomMap::ParseDicomMetaInformation()" to |
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2848 // speed up things here |
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2849 |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2850 ParsedDicomFile dicom(dicomContent); |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2851 |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2852 Json::Value header; |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
2853 OrthancConfiguration::DefaultDicomHeaderToJson(header, dicom); |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2854 |
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2855 AnswerDicomAsJson(call, header); |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2856 } |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2857 |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2858 |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2859 static void InvalidateTags(RestApiPostCall& call) |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2860 { |
4420 | 2861 if (call.IsDocumentation()) |
2862 { | |
2863 call.GetDocumentation() | |
2864 .SetTag("System") | |
2865 .SetSummary("Invalidate DICOM-as-JSON summaries") | |
2866 .SetDescription("Remove all the attachments of the type \"DICOM-as-JSON\" that are associated will all the " | |
2867 "DICOM instances stored in Orthanc. These summaries will be automatically re-created on the next access. " | |
2868 "This is notably useful after changes to the `Dictionary` configuration option. " | |
2869 "https://book.orthanc-server.com/faq/orthanc-storage.html#storage-area"); | |
2870 return; | |
2871 } | |
2872 | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2873 ServerIndex& index = OrthancRestApi::GetIndex(call); |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2874 |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2875 // Loop over the instances, grouping them by parent studies so as |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2876 // to avoid large memory consumption |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2877 std::list<std::string> studies; |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2878 index.GetAllUuids(studies, ResourceType_Study); |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2879 |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2880 for (std::list<std::string>::const_iterator |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2881 study = studies.begin(); study != studies.end(); ++study) |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2882 { |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2883 std::list<std::string> instances; |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2884 index.GetChildInstances(instances, *study); |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2885 |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2886 for (std::list<std::string>::const_iterator |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2887 instance = instances.begin(); instance != instances.end(); ++instance) |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2888 { |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2889 index.DeleteAttachment(*instance, FileContentType_DicomAsJson); |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2890 } |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2891 } |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2892 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2893 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2894 } |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2895 |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2896 |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2897 template <enum ResourceType type> |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2898 static void ReconstructResource(RestApiPostCall& call) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2899 { |
4420 | 2900 if (call.IsDocumentation()) |
2901 { | |
2902 const std::string resource = GetResourceTypeText(type, false /* plural */, false /* lower case */); | |
2903 call.GetDocumentation() | |
2904 .SetTag(GetResourceTypeText(type, true /* plural */, true /* upper case */)) | |
2905 .SetSummary("Reconstruct tags of " + resource) | |
2906 .SetDescription("Reconstruct the main DICOM tags of the " + resource + " whose Orthanc identifier is provided " | |
2907 "in the URL. This is useful if child studies/series/instances have inconsistent values for " | |
2908 "higher-level tags, in order to force Orthanc to use the value from the resource of interest. " | |
2909 "Beware that this is a time-consuming operation, as all the children DICOM instances will be " | |
2910 "parsed again, and the Orthanc index will be updated accordingly.") | |
2911 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); | |
2912 return; | |
2913 } | |
2914 | |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2915 ServerContext& context = OrthancRestApi::GetContext(call); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2916 ServerToolbox::ReconstructResource(context, call.GetUriComponent("id", "")); |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2917 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2918 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2919 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2920 |
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2921 static void ReconstructAllResources(RestApiPostCall& call) |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2922 { |
4420 | 2923 if (call.IsDocumentation()) |
2924 { | |
2925 call.GetDocumentation() | |
2926 .SetTag("System") | |
2927 .SetSummary("Reconstruct all the index") | |
2928 .SetDescription("Reconstruct the index of all the tags of all the DICOM instances that are stored in Orthanc. " | |
2929 "This is notably useful after the deletion of resources whose children resources have inconsistent " | |
2930 "values with their sibling resources. Beware that this is a highly time-consuming operation, " | |
2931 "as all the DICOM instances will be parsed again, and as all the Orthanc index will be regenerated."); | |
2932 return; | |
2933 } | |
2934 | |
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2935 ServerContext& context = OrthancRestApi::GetContext(call); |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2936 |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2937 std::list<std::string> studies; |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2938 context.GetIndex().GetAllUuids(studies, ResourceType_Study); |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2939 |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2940 for (std::list<std::string>::const_iterator |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2941 study = studies.begin(); study != studies.end(); ++study) |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2942 { |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2943 ServerToolbox::ReconstructResource(context, *study); |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2944 } |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2945 |
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2946 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2947 } |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2948 |
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2949 |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2950 void OrthancRestApi::RegisterResources() |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2951 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2952 Register("/instances", ListResources<ResourceType_Instance>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2953 Register("/patients", ListResources<ResourceType_Patient>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2954 Register("/series", ListResources<ResourceType_Series>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2955 Register("/studies", ListResources<ResourceType_Study>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2956 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2957 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2958 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2959 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2960 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2961 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2962 Register("/series/{id}", GetSingleResource<ResourceType_Series>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2963 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2964 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2965 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2966 Register("/instances/{id}/statistics", GetResourceStatistics); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2967 Register("/patients/{id}/statistics", GetResourceStatistics); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2968 Register("/studies/{id}/statistics", GetResourceStatistics); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2969 Register("/series/{id}/statistics", GetResourceStatistics); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2970 |
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2971 Register("/patients/{id}/shared-tags", GetSharedTags); |
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2972 Register("/series/{id}/shared-tags", GetSharedTags); |
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2973 Register("/studies/{id}/shared-tags", GetSharedTags); |
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2974 |
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2975 Register("/instances/{id}/module", GetModule<ResourceType_Instance, DicomModule_Instance>); |
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2976 Register("/patients/{id}/module", GetModule<ResourceType_Patient, DicomModule_Patient>); |
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2977 Register("/series/{id}/module", GetModule<ResourceType_Series, DicomModule_Series>); |
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2978 Register("/studies/{id}/module", GetModule<ResourceType_Study, DicomModule_Study>); |
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2979 Register("/studies/{id}/module-patient", GetModule<ResourceType_Study, DicomModule_Patient>); |
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2980 |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2981 Register("/instances/{id}/file", GetInstanceFile); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2982 Register("/instances/{id}/export", ExportInstanceFile); |
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2983 Register("/instances/{id}/tags", GetInstanceTagsBis); |
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2984 Register("/instances/{id}/simplified-tags", GetInstanceTags<DicomToJsonFormat_Human>); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2985 Register("/instances/{id}/frames", ListFrames); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2986 |
4424
83371ccdfe80
openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4422
diff
changeset
|
2987 Register("/instances/{id}/frames/{frame}", RestApi::AutoListChildren); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2988 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
2989 Register("/instances/{id}/frames/{frame}/rendered", GetRenderedFrame); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2990 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2991 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2992 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2993 Register("/instances/{id}/frames/{frame}/matlab", GetMatlabImage); |
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2994 Register("/instances/{id}/frames/{frame}/raw", GetRawFrame<false>); |
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2995 Register("/instances/{id}/frames/{frame}/raw.gz", GetRawFrame<true>); |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2996 Register("/instances/{id}/pdf", ExtractPdf); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2997 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
2998 Register("/instances/{id}/rendered", GetRenderedFrame); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2999 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3000 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3001 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
3002 Register("/instances/{id}/matlab", GetMatlabImage); |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3003 Register("/instances/{id}/header", GetInstanceHeader); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3004 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3005 Register("/patients/{id}/protected", IsProtectedPatient); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3006 Register("/patients/{id}/protected", SetPatientProtection); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3007 |
4409 | 3008 std::vector<std::string> resourceTypes; |
3009 resourceTypes.push_back("patients"); | |
3010 resourceTypes.push_back("studies"); | |
3011 resourceTypes.push_back("series"); | |
3012 resourceTypes.push_back("instances"); | |
3013 | |
3014 for (size_t i = 0; i < resourceTypes.size(); i++) | |
3015 { | |
3016 Register("/" + resourceTypes[i] + "/{id}/metadata", ListMetadata); | |
3017 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", DeleteMetadata); | |
3018 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", GetMetadata); | |
3019 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", SetMetadata); | |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3020 |
4409 | 3021 Register("/" + resourceTypes[i] + "/{id}/attachments", ListAttachments); |
3022 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", DeleteAttachment); | |
3023 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", GetAttachmentOperations); | |
3024 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", UploadAttachment); | |
3025 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compress", ChangeAttachmentCompression<CompressionType_ZlibWithSize>); | |
3026 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-data", GetAttachmentData<0>); | |
3027 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-md5", GetAttachmentCompressedMD5); | |
3028 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-size", GetAttachmentCompressedSize); | |
3029 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/data", GetAttachmentData<1>); | |
3030 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/is-compressed", IsAttachmentCompressed); | |
3031 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/md5", GetAttachmentMD5); | |
3032 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/size", GetAttachmentSize); | |
3033 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/uncompress", ChangeAttachmentCompression<CompressionType_None>); | |
3034 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/verify-md5", VerifyAttachment); | |
3035 } | |
782 | 3036 |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3037 Register("/tools/invalidate-tags", InvalidateTags); |
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3038 Register("/tools/lookup", Lookup); |
1354 | 3039 Register("/tools/find", Find); |
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3040 |
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3041 Register("/patients/{id}/studies", GetChildResources<ResourceType_Patient, ResourceType_Study>); |
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3042 Register("/patients/{id}/series", GetChildResources<ResourceType_Patient, ResourceType_Series>); |
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3043 Register("/patients/{id}/instances", GetChildResources<ResourceType_Patient, ResourceType_Instance>); |
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3044 Register("/studies/{id}/series", GetChildResources<ResourceType_Study, ResourceType_Series>); |
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3045 Register("/studies/{id}/instances", GetChildResources<ResourceType_Study, ResourceType_Instance>); |
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3046 Register("/series/{id}/instances", GetChildResources<ResourceType_Series, ResourceType_Instance>); |
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3047 |
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3048 Register("/studies/{id}/patient", GetParentResource<ResourceType_Study, ResourceType_Patient>); |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3049 Register("/series/{id}/patient", GetParentResource<ResourceType_Series, ResourceType_Patient>); |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3050 Register("/series/{id}/study", GetParentResource<ResourceType_Series, ResourceType_Study>); |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3051 Register("/instances/{id}/patient", GetParentResource<ResourceType_Instance, ResourceType_Patient>); |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3052 Register("/instances/{id}/study", GetParentResource<ResourceType_Instance, ResourceType_Study>); |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3053 Register("/instances/{id}/series", GetParentResource<ResourceType_Instance, ResourceType_Series>); |
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3054 |
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3055 Register("/patients/{id}/instances-tags", GetChildInstancesTags); |
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3056 Register("/studies/{id}/instances-tags", GetChildInstancesTags); |
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3057 Register("/series/{id}/instances-tags", GetChildInstancesTags); |
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3058 |
782 | 3059 Register("/instances/{id}/content/*", GetRawContent); |
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3060 |
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3061 Register("/series/{id}/ordered-slices", OrderSlices); |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3062 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3063 Register("/patients/{id}/reconstruct", ReconstructResource<ResourceType_Patient>); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3064 Register("/studies/{id}/reconstruct", ReconstructResource<ResourceType_Study>); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3065 Register("/series/{id}/reconstruct", ReconstructResource<ResourceType_Series>); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3066 Register("/instances/{id}/reconstruct", ReconstructResource<ResourceType_Instance>); |
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3067 Register("/tools/reconstruct", ReconstructAllResources); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3068 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3069 } |