Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h @ 4682:d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 07 Jun 2021 18:35:46 +0200 |
| parents | 5b929e6b3c36 |
| children | 7182f5732480 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
| 136 | 11 * |
| 0 | 12 * This program is distributed in the hope that it will be useful, but |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
| 0 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
| 0 | 20 **/ |
| 21 | |
| 22 | |
| 23 #pragma once | |
| 24 | |
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25 #include "ITagVisitor.h" |
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26 #include "../DicomFormat/DicomElement.h" |
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27 #include "../DicomFormat/DicomMap.h" |
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28 #include "../DicomFormat/DicomPath.h" |
| 791 | 29 |
| 0 | 30 #include <dcmtk/dcmdata/dcdatset.h> |
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31 #include <dcmtk/dcmdata/dcmetinf.h> |
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32 #include <dcmtk/dcmdata/dcpixseq.h> |
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33 #include <dcmtk/dcmdata/dcfilefo.h> |
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34 #include <json/value.h> |
| 0 | 35 |
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36 #if ORTHANC_ENABLE_DCMTK != 1 |
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37 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 |
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38 #endif |
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39 |
| 2126 | 40 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 41 # include <gtest/gtest_prod.h> | |
| 42 #endif | |
| 43 | |
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44 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) |
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45 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined |
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46 #endif |
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47 |
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48 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) |
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49 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined |
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50 #endif |
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51 |
| 2126 | 52 |
| 62 | 53 namespace Orthanc |
| 0 | 54 { |
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55 class ORTHANC_PUBLIC FromDcmtkBridge : public boost::noncopyable |
| 0 | 56 { |
| 2126 | 57 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 58 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
| 59 #endif | |
| 60 | |
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61 friend class ParsedDicomFile; |
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62 |
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63 public: |
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64 // New in Orthanc 1.9.4 |
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65 class ORTHANC_PUBLIC IDicomPathVisitor : public boost::noncopyable |
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66 { |
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67 public: |
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68 virtual ~IDicomPathVisitor() |
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69 { |
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70 } |
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71 |
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72 virtual void Visit(DcmItem& item, |
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73 const DicomTag& tag) = 0; |
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74 }; |
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75 |
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76 |
| 2125 | 77 private: |
| 78 FromDcmtkBridge(); // Pure static class | |
| 79 | |
| 2126 | 80 static void DatasetToJson(Json::Value& parent, |
| 81 DcmItem& item, | |
| 82 DicomToJsonFormat format, | |
| 83 DicomToJsonFlags flags, | |
| 84 unsigned int maxStringLength, | |
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85 Encoding encoding, |
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86 bool hasCodeExtensions, |
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87 const std::set<DicomTag>& ignoreTagLength, |
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88 unsigned int depth); |
| 2126 | 89 |
| 90 static void ElementToJson(Json::Value& parent, | |
| 91 DcmElement& element, | |
| 92 DicomToJsonFormat format, | |
| 93 DicomToJsonFlags flags, | |
| 94 unsigned int maxStringLength, | |
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95 Encoding dicomEncoding, |
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96 bool hasCodeExtensions, |
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97 const std::set<DicomTag>& ignoreTagLength, |
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98 unsigned int depth); |
| 2126 | 99 |
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100 static void ChangeStringEncoding(DcmItem& dataset, |
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101 Encoding source, |
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102 bool hasSourceCodeExtensions, |
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103 Encoding target); |
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104 |
| 0 | 105 public: |
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106 static void InitializeDictionary(bool loadPrivateDictionary); |
| 1656 | 107 |
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108 static void RegisterDictionaryTag(const DicomTag& tag, |
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109 ValueRepresentation vr, |
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110 const std::string& name, |
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111 unsigned int minMultiplicity, |
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112 unsigned int maxMultiplicity, |
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113 const std::string& privateCreator); |
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114 |
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115 static Encoding DetectEncoding(bool& hasCodeExtensions, |
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116 DcmItem& dataset, |
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117 Encoding defaultEncoding); |
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118 |
| 4297 | 119 // Compatibility wrapper for Orthanc <= 1.5.4 |
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120 static Encoding DetectEncoding(DcmItem& dataset, |
| 4297 | 121 Encoding defaultEncoding); |
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122 |
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123 static DicomTag Convert(const DcmTag& tag); |
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124 |
| 0 | 125 static DicomTag GetTag(const DcmElement& element); |
| 126 | |
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127 static bool IsUnknownTag(const DicomTag& tag); |
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128 |
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129 static DicomValue* ConvertLeafElement(DcmElement& element, |
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130 DicomToJsonFlags flags, |
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131 unsigned int maxStringLength, |
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132 Encoding encoding, |
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133 bool hasCodeExtensions, |
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134 const std::set<DicomTag>& ignoreTagLength); |
| 0 | 135 |
| 2126 | 136 static void ExtractHeaderAsJson(Json::Value& target, |
| 137 DcmMetaInfo& header, | |
| 138 DicomToJsonFormat format, | |
| 139 DicomToJsonFlags flags, | |
| 140 unsigned int maxStringLength); | |
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141 |
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142 static std::string GetTagName(const DicomTag& tag, |
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143 const std::string& privateCreator); |
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144 |
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145 static std::string GetTagName(const DcmElement& element); |
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146 |
| 4297 | 147 static std::string GetTagName(const DicomElement& element); |
| 0 | 148 |
| 304 | 149 static DicomTag ParseTag(const char* name); |
| 0 | 150 |
| 4297 | 151 static DicomTag ParseTag(const std::string& name); |
| 0 | 152 |
| 153 static bool HasTag(const DicomMap& fields, | |
| 4297 | 154 const std::string& tagName); |
| 0 | 155 |
| 156 static const DicomValue& GetValue(const DicomMap& fields, | |
| 4297 | 157 const std::string& tagName); |
| 0 | 158 |
| 159 static void SetValue(DicomMap& target, | |
| 160 const std::string& tagName, | |
| 4297 | 161 DicomValue* value); |
| 0 | 162 |
| 163 static void ToJson(Json::Value& result, | |
| 1368 | 164 const DicomMap& values, |
| 165 bool simplify); | |
| 176 | 166 |
| 788 | 167 static std::string GenerateUniqueIdentifier(ResourceType level); |
|
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168 |
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169 static bool SaveToMemoryBuffer(std::string& buffer, |
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170 DcmDataset& dataSet); |
| 1360 | 171 |
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172 static bool Transcode(DcmFileFormat& dicom, |
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173 DicomTransferSyntax syntax, |
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174 const DcmRepresentationParameter* representation); |
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175 |
|
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176 static ValueRepresentation Convert(DcmEVR vr); |
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177 |
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178 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
| 1689 | 179 |
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180 static DcmElement* CreateElementForTag(const DicomTag& tag, |
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181 const std::string& privateCreator); |
| 1689 | 182 |
| 183 static void FillElementWithString(DcmElement& element, | |
| 1695 | 184 const std::string& utf8alue, // Encoded using UTF-8 |
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185 bool decodeDataUriScheme, |
| 1695 | 186 Encoding dicomEncoding); |
| 1689 | 187 |
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188 static DcmElement* FromJson(const DicomTag& tag, |
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189 const Json::Value& element, // Encoded using UTF-8 |
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190 bool decodeDataUriScheme, |
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191 Encoding dicomEncoding, |
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192 const std::string& privateCreator); |
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193 |
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194 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
|
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FromDcmtkBridge::FromJson
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195 |
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196 static Encoding ExtractEncoding(const Json::Value& json, |
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197 Encoding defaultEncoding); |
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198 |
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199 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
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200 bool generateIdentifiers, |
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201 bool decodeDataUriScheme, |
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202 Encoding defaultEncoding, |
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203 const std::string& privateCreator); |
|
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204 |
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205 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
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206 size_t size); |
|
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207 |
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208 static void FromJson(DicomMap& values, |
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209 const Json::Value& result); |
|
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210 |
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211 static void ExtractDicomSummary(DicomMap& target, |
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212 DcmItem& dataset, |
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213 unsigned int maxStringLength, |
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214 const std::set<DicomTag>& ignoreTagLength); |
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215 |
|
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216 static void ExtractDicomAsJson(Json::Value& target, |
|
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217 DcmDataset& dataset, |
|
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218 DicomToJsonFormat format, |
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219 DicomToJsonFlags flags, |
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220 unsigned int maxStringLength, |
|
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221 const std::set<DicomTag>& ignoreTagLength); |
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222 |
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223 static void InitializeCodecs(); |
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224 |
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225 static void FinalizeCodecs(); |
|
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226 |
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227 static void Apply(DcmItem& dataset, |
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228 ITagVisitor& visitor, |
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229 Encoding defaultEncoding); |
|
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230 |
|
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231 static bool LookupDcmtkTransferSyntax(E_TransferSyntax& target, |
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232 DicomTransferSyntax source); |
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233 |
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234 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
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235 E_TransferSyntax source); |
| 3881 | 236 |
| 237 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, | |
|
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238 DcmFileFormat& dicom); |
|
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239 |
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240 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
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241 DcmDataset& dicom); |
|
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242 |
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243 static void LogMissingTagsForStore(DcmDataset& dicom); |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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244 |
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245 static void Apply(IDicomPathVisitor& visitor, |
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246 DcmDataset& dataset, |
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247 const DicomPath& path); |
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248 |
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249 static void RemovePath(DcmDataset& dataset, |
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250 const DicomPath& path); |
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251 |
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252 static void ReplacePath(DcmDataset& dataset, |
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253 const DicomPath& path, |
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254 const DcmElement& element); |
| 0 | 255 }; |
| 256 } |