Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h @ 4150:b56f3a37a4a1
optimization of ChunkedBuffer if many small chunks are added
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 19 Aug 2020 11:18:55 +0200 |
| parents | 0ddc5297a8ab |
| children | 785a2713323e |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
| 136 | 11 * |
| 0 | 12 * This program is distributed in the hope that it will be useful, but |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
| 0 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
| 0 | 20 **/ |
| 21 | |
| 22 | |
| 23 #pragma once | |
| 24 | |
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25 #include "ITagVisitor.h" |
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26 #include "../DicomFormat/DicomElement.h" |
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27 #include "../DicomFormat/DicomMap.h" |
| 791 | 28 |
| 0 | 29 #include <dcmtk/dcmdata/dcdatset.h> |
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30 #include <dcmtk/dcmdata/dcmetinf.h> |
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31 #include <dcmtk/dcmdata/dcpixseq.h> |
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32 #include <dcmtk/dcmdata/dcfilefo.h> |
| 0 | 33 #include <json/json.h> |
| 34 | |
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35 #if ORTHANC_ENABLE_DCMTK != 1 |
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36 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 |
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37 #endif |
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38 |
| 2126 | 39 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 40 # include <gtest/gtest_prod.h> | |
| 41 #endif | |
| 42 | |
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43 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) |
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44 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined |
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45 #endif |
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46 |
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47 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) |
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48 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined |
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49 #endif |
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50 |
| 2126 | 51 |
| 62 | 52 namespace Orthanc |
| 0 | 53 { |
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54 class ORTHANC_PUBLIC FromDcmtkBridge : public boost::noncopyable |
| 0 | 55 { |
| 2126 | 56 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 57 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
| 58 #endif | |
| 59 | |
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60 friend class ParsedDicomFile; |
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61 |
| 2125 | 62 private: |
| 63 FromDcmtkBridge(); // Pure static class | |
| 64 | |
| 2126 | 65 static void DatasetToJson(Json::Value& parent, |
| 66 DcmItem& item, | |
| 67 DicomToJsonFormat format, | |
| 68 DicomToJsonFlags flags, | |
| 69 unsigned int maxStringLength, | |
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70 Encoding encoding, |
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71 bool hasCodeExtensions, |
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72 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 73 |
| 74 static void ElementToJson(Json::Value& parent, | |
| 75 DcmElement& element, | |
| 76 DicomToJsonFormat format, | |
| 77 DicomToJsonFlags flags, | |
| 78 unsigned int maxStringLength, | |
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79 Encoding dicomEncoding, |
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80 bool hasCodeExtensions, |
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81 const std::set<DicomTag>& ignoreTagLength); |
| 2126 | 82 |
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83 static void ChangeStringEncoding(DcmItem& dataset, |
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84 Encoding source, |
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85 bool hasSourceCodeExtensions, |
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86 Encoding target); |
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87 |
| 0 | 88 public: |
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89 static void InitializeDictionary(bool loadPrivateDictionary); |
| 1656 | 90 |
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91 static void RegisterDictionaryTag(const DicomTag& tag, |
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92 ValueRepresentation vr, |
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93 const std::string& name, |
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94 unsigned int minMultiplicity, |
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95 unsigned int maxMultiplicity, |
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96 const std::string& privateCreator); |
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97 |
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98 static Encoding DetectEncoding(bool& hasCodeExtensions, |
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99 DcmItem& dataset, |
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100 Encoding defaultEncoding); |
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101 |
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102 static Encoding DetectEncoding(DcmItem& dataset, |
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103 Encoding defaultEncoding) |
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104 { |
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105 // Compatibility wrapper for Orthanc <= 1.5.4 |
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106 bool hasCodeExtensions; // ignored |
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107 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
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108 } |
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109 |
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110 static DicomTag Convert(const DcmTag& tag); |
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111 |
| 0 | 112 static DicomTag GetTag(const DcmElement& element); |
| 113 | |
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114 static bool IsUnknownTag(const DicomTag& tag); |
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115 |
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116 static DicomValue* ConvertLeafElement(DcmElement& element, |
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117 DicomToJsonFlags flags, |
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118 unsigned int maxStringLength, |
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119 Encoding encoding, |
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120 bool hasCodeExtensions, |
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121 const std::set<DicomTag>& ignoreTagLength); |
| 0 | 122 |
| 2126 | 123 static void ExtractHeaderAsJson(Json::Value& target, |
| 124 DcmMetaInfo& header, | |
| 125 DicomToJsonFormat format, | |
| 126 DicomToJsonFlags flags, | |
| 127 unsigned int maxStringLength); | |
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128 |
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129 static std::string GetTagName(const DicomTag& tag, |
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130 const std::string& privateCreator); |
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131 |
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132 static std::string GetTagName(const DcmElement& element); |
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133 |
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134 static std::string GetTagName(const DicomElement& element) |
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135 { |
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136 return GetTagName(element.GetTag(), ""); |
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137 } |
| 0 | 138 |
| 304 | 139 static DicomTag ParseTag(const char* name); |
| 0 | 140 |
| 304 | 141 static DicomTag ParseTag(const std::string& name) |
| 0 | 142 { |
| 304 | 143 return ParseTag(name.c_str()); |
| 0 | 144 } |
| 145 | |
| 146 static bool HasTag(const DicomMap& fields, | |
| 147 const std::string& tagName) | |
| 148 { | |
| 304 | 149 return fields.HasTag(ParseTag(tagName)); |
| 0 | 150 } |
| 151 | |
| 152 static const DicomValue& GetValue(const DicomMap& fields, | |
| 153 const std::string& tagName) | |
| 154 { | |
| 304 | 155 return fields.GetValue(ParseTag(tagName)); |
| 0 | 156 } |
| 157 | |
| 158 static void SetValue(DicomMap& target, | |
| 159 const std::string& tagName, | |
| 160 DicomValue* value) | |
| 161 { | |
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162 const DicomTag tag = ParseTag(tagName); |
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163 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value); |
| 0 | 164 } |
| 165 | |
| 166 static void ToJson(Json::Value& result, | |
| 1368 | 167 const DicomMap& values, |
| 168 bool simplify); | |
| 176 | 169 |
| 788 | 170 static std::string GenerateUniqueIdentifier(ResourceType level); |
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171 |
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172 static bool SaveToMemoryBuffer(std::string& buffer, |
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173 DcmDataset& dataSet); |
| 1360 | 174 |
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175 static bool Transcode(DcmFileFormat& dicom, |
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176 DicomTransferSyntax syntax, |
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177 const DcmRepresentationParameter* representation); |
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178 |
|
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179 static ValueRepresentation Convert(DcmEVR vr); |
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180 |
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181 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
| 1689 | 182 |
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183 static DcmElement* CreateElementForTag(const DicomTag& tag, |
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184 const std::string& privateCreator); |
| 1689 | 185 |
| 186 static void FillElementWithString(DcmElement& element, | |
| 1695 | 187 const std::string& utf8alue, // Encoded using UTF-8 |
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188 bool decodeDataUriScheme, |
| 1695 | 189 Encoding dicomEncoding); |
| 1689 | 190 |
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191 static DcmElement* FromJson(const DicomTag& tag, |
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192 const Json::Value& element, // Encoded using UTF-8 |
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193 bool decodeDataUriScheme, |
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194 Encoding dicomEncoding, |
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195 const std::string& privateCreator); |
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196 |
|
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197 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
|
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FromDcmtkBridge::FromJson
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198 |
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FromDcmtkBridge::FromJson
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199 static Encoding ExtractEncoding(const Json::Value& json, |
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200 Encoding defaultEncoding); |
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201 |
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FromDcmtkBridge::FromJson
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202 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
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203 bool generateIdentifiers, |
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204 bool decodeDataUriScheme, |
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205 Encoding defaultEncoding, |
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206 const std::string& privateCreator); |
|
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207 |
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208 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
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1934
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209 size_t size); |
|
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210 |
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211 static void FromJson(DicomMap& values, |
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212 const Json::Value& result); |
|
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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213 |
|
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214 static void ExtractDicomSummary(DicomMap& target, |
|
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215 DcmItem& dataset, |
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Fix DICOM SCP filters if some query tag has more than 256 characters
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216 unsigned int maxStringLength, |
|
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217 const std::set<DicomTag>& ignoreTagLength); |
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218 |
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219 static void ExtractDicomAsJson(Json::Value& target, |
|
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220 DcmDataset& dataset, |
|
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221 DicomToJsonFormat format, |
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222 DicomToJsonFlags flags, |
|
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223 unsigned int maxStringLength, |
|
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224 const std::set<DicomTag>& ignoreTagLength); |
|
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225 |
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226 static void InitializeCodecs(); |
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227 |
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228 static void FinalizeCodecs(); |
|
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ITagVisitor - for anonymization relationships
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229 |
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ITagVisitor - for anonymization relationships
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230 static void Apply(DcmItem& dataset, |
|
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231 ITagVisitor& visitor, |
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232 Encoding defaultEncoding); |
|
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233 |
|
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234 static bool LookupDcmtkTransferSyntax(E_TransferSyntax& target, |
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235 DicomTransferSyntax source); |
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236 |
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237 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
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238 E_TransferSyntax source); |
| 3881 | 239 |
| 240 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, | |
|
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implemented IDicomTranscoder::Store()
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241 DcmFileFormat& dicom); |
| 0 | 242 }; |
| 243 } |