Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerIndex.h @ 4584:b25941dcdbbe db-changes
ITransactionContext to uncouple ServerIndex from database wrapper
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 09 Mar 2021 16:18:24 +0100 |
| parents | 42a846166fa3 |
| children | f0bdd99f3d81 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
| 34 #pragma once | |
| 35 | |
| 4045 | 36 #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" |
| 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" | |
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38 |
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39 #include "Database/IDatabaseWrapper.h" |
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40 #include "DicomInstanceOrigin.h" |
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41 |
| 0 | 42 #include <boost/thread.hpp> |
| 220 | 43 #include <boost/noncopyable.hpp> |
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44 |
| 62 | 45 namespace Orthanc |
| 0 | 46 { |
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47 class DatabaseLookup; |
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48 class ParsedDicomFile; |
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49 class ServerContext; |
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50 |
| 220 | 51 class ServerIndex : public boost::noncopyable |
| 0 | 52 { |
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53 public: |
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54 typedef std::list<FileInfo> Attachments; |
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55 typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; |
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56 |
| 0 | 57 private: |
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58 class Listener; |
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59 class Transaction; |
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60 class UnstableResourcePayload; |
| 3027 | 61 class MainDicomTagsRegistry; |
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62 |
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63 bool done_; |
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64 boost::mutex monitoringMutex_; |
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65 boost::mutex databaseMutex_; // TODO - REMOVE |
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66 boost::thread flushThread_; |
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67 boost::thread unstableResourcesMonitorThread_; |
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69 std::unique_ptr<Listener> listener_; |
| 1247 | 70 IDatabaseWrapper& db_; |
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71 LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; |
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72 |
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73 uint64_t maximumStorageSize_; |
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74 unsigned int maximumPatients_; |
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75 std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; |
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76 |
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77 static void FlushThread(ServerIndex* that, |
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78 unsigned int threadSleep); |
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79 |
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80 static void UnstableResourcesMonitorThread(ServerIndex* that, |
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81 unsigned int threadSleep); |
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82 |
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83 void StandaloneRecycling(uint64_t maximumStorageSize, |
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84 unsigned int maximumPatientCount); |
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85 |
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86 void MarkAsUnstable(int64_t id, |
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87 Orthanc::ResourceType type, |
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88 const std::string& publicId); |
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89 |
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90 void NormalizeLookup(std::vector<DatabaseConstraint>& target, |
| 3027 | 91 const DatabaseLookup& source, |
| 92 ResourceType level) const; | |
| 93 | |
| 4554 | 94 bool IsUnstableResource(int64_t id); |
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| 0 | 96 public: |
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97 ServerIndex(ServerContext& context, |
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98 IDatabaseWrapper& database, |
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99 unsigned int threadSleepGranularityMilliseconds); |
| 0 | 100 |
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101 ~ServerIndex(); |
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102 |
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103 void Stop(); |
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104 |
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105 // "size == 0" means no limit on the storage size |
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106 void SetMaximumStorageSize(uint64_t size); |
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107 |
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108 // "count == 0" means no limit on the number of patients |
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109 void SetMaximumPatientCount(unsigned int count); |
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110 |
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111 // It is assumed that "GetDatabaseVersion()" can run out of a |
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112 // database transaction |
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113 unsigned int GetDatabaseVersion() |
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114 { |
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115 return db_.GetDatabaseVersion(); |
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116 } |
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117 |
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119 |
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120 /*** |
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121 ** PROTOTYPING FOR DB REFACTORING BELOW |
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122 ***/ |
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123 |
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124 public: |
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125 class ITransactionContext : public boost::noncopyable |
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126 { |
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127 public: |
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128 virtual ~ITransactionContext() |
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129 { |
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130 } |
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131 |
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132 virtual bool IsUnstableResource(int64_t id) = 0; |
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133 |
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134 virtual bool LookupRemainingLevel(std::string& remainingPublicId /* out */, |
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135 ResourceType& remainingLevel /* out */) = 0; |
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136 |
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137 virtual void MarkAsUnstable(int64_t id, |
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138 Orthanc::ResourceType type, |
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139 const std::string& publicId) = 0; |
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140 |
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141 virtual void SignalAttachmentsAdded(uint64_t compressedSize) = 0; |
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142 |
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143 virtual void SignalChange(const ServerIndexChange& change) = 0; |
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144 }; |
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145 |
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146 |
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147 class ReadOnlyTransaction : public boost::noncopyable |
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148 { |
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149 private: |
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150 ITransactionContext& context_; |
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151 |
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152 protected: |
| 4554 | 153 IDatabaseWrapper& db_; |
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154 |
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155 public: |
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156 explicit ReadOnlyTransaction(IDatabaseWrapper& db, |
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157 ITransactionContext& context) : |
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158 context_(context), |
| 4554 | 159 db_(db) |
| 160 { | |
| 161 } | |
| 162 | |
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163 ITransactionContext& GetTransactionContext() |
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164 { |
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165 return context_; |
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166 } |
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167 |
| 4554 | 168 /** |
| 169 * Higher-level constructions | |
| 170 **/ | |
| 171 | |
| 172 SeriesStatus GetSeriesStatus(int64_t id, | |
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173 int64_t expectedNumberOfInstances); |
| 4554 | 174 |
| 175 void MainDicomTagsToJson(Json::Value& result, | |
| 176 int64_t resourceId, | |
| 4578 | 177 ResourceType resourceType); |
| 4554 | 178 |
| 179 /** | |
| 180 * Read-only methods from "IDatabaseWrapper" | |
| 181 **/ | |
| 182 | |
| 4562 | 183 void ApplyLookupResources(std::list<std::string>& resourcesId, |
| 184 std::list<std::string>* instancesId, // Can be NULL if not needed | |
| 185 const std::vector<DatabaseConstraint>& lookup, | |
| 186 ResourceType queryLevel, | |
| 187 size_t limit) | |
| 188 { | |
| 189 return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); | |
| 190 } | |
| 191 | |
| 4554 | 192 void GetAllMetadata(std::map<MetadataType, std::string>& target, |
| 193 int64_t id) | |
| 194 { | |
| 195 db_.GetAllMetadata(target, id); | |
| 4555 | 196 } |
| 197 | |
| 198 void GetAllPublicIds(std::list<std::string>& target, | |
| 199 ResourceType resourceType) | |
| 200 { | |
| 201 return db_.GetAllPublicIds(target, resourceType); | |
| 202 } | |
| 203 | |
| 204 void GetAllPublicIds(std::list<std::string>& target, | |
| 205 ResourceType resourceType, | |
| 206 size_t since, | |
| 207 size_t limit) | |
| 208 { | |
| 209 return db_.GetAllPublicIds(target, resourceType, since, limit); | |
| 210 } | |
| 4554 | 211 |
| 4558 | 212 void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
| 213 bool& done /*out*/, | |
| 214 int64_t since, | |
| 215 uint32_t maxResults) | |
| 216 { | |
| 217 db_.GetChanges(target, done, since, maxResults); | |
| 218 } | |
| 219 | |
| 4559 | 220 void GetChildrenInternalId(std::list<int64_t>& target, |
| 221 int64_t id) | |
| 222 { | |
| 223 db_.GetChildrenInternalId(target, id); | |
| 224 } | |
| 225 | |
| 4554 | 226 void GetChildrenPublicId(std::list<std::string>& target, |
| 227 int64_t id) | |
| 228 { | |
| 229 db_.GetChildrenPublicId(target, id); | |
| 230 } | |
| 231 | |
| 4558 | 232 void GetExportedResources(std::list<ExportedResource>& target /*out*/, |
| 233 bool& done /*out*/, | |
| 234 int64_t since, | |
| 235 uint32_t maxResults) | |
| 236 { | |
| 237 return db_.GetExportedResources(target, done, since, maxResults); | |
| 238 } | |
| 239 | |
| 240 void GetLastChange(std::list<ServerIndexChange>& target /*out*/) | |
| 241 { | |
| 242 db_.GetLastChange(target); | |
| 243 } | |
| 244 | |
| 245 void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) | |
| 246 { | |
| 247 return db_.GetLastExportedResource(target); | |
| 248 } | |
| 249 | |
| 250 int64_t GetLastChangeIndex() | |
| 251 { | |
| 252 return db_.GetLastChangeIndex(); | |
| 253 } | |
| 254 | |
| 4554 | 255 void GetMainDicomTags(DicomMap& map, |
| 256 int64_t id) | |
| 257 { | |
| 258 db_.GetMainDicomTags(map, id); | |
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259 } |
| 4558 | 260 |
| 4559 | 261 std::string GetPublicId(int64_t resourceId) |
| 262 { | |
| 263 return db_.GetPublicId(resourceId); | |
| 264 } | |
| 265 | |
| 4558 | 266 uint64_t GetResourceCount(ResourceType resourceType) |
| 267 { | |
| 268 return db_.GetResourceCount(resourceType); | |
| 269 } | |
| 270 | |
| 4559 | 271 ResourceType GetResourceType(int64_t resourceId) |
| 272 { | |
| 273 return db_.GetResourceType(resourceId); | |
| 274 } | |
| 275 | |
| 4558 | 276 uint64_t GetTotalCompressedSize() |
| 277 { | |
| 278 return db_.GetTotalCompressedSize(); | |
| 279 } | |
| 280 | |
| 281 uint64_t GetTotalUncompressedSize() | |
| 282 { | |
| 283 return db_.GetTotalUncompressedSize(); | |
| 284 } | |
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285 |
| 4559 | 286 bool IsProtectedPatient(int64_t internalId) |
| 287 { | |
| 288 return db_.IsProtectedPatient(internalId); | |
| 289 } | |
| 290 | |
| 4560 | 291 void ListAvailableAttachments(std::set<FileContentType>& target, |
| 292 int64_t id) | |
| 293 { | |
| 294 db_.ListAvailableAttachments(target, id); | |
| 295 } | |
| 296 | |
| 4554 | 297 bool LookupAttachment(FileInfo& attachment, |
| 298 int64_t id, | |
| 299 FileContentType contentType) | |
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300 { |
| 4554 | 301 return db_.LookupAttachment(attachment, id, contentType); |
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302 } |
| 4554 | 303 |
| 4562 | 304 bool LookupGlobalProperty(std::string& target, |
| 305 GlobalProperty property) | |
| 306 { | |
| 307 return db_.LookupGlobalProperty(target, property); | |
| 308 } | |
| 309 | |
| 4560 | 310 bool LookupMetadata(std::string& target, |
| 311 int64_t id, | |
| 312 MetadataType type) | |
| 313 { | |
| 314 return db_.LookupMetadata(target, id, type); | |
| 315 } | |
| 316 | |
| 317 bool LookupParent(int64_t& parentId, | |
| 318 int64_t resourceId) | |
| 319 { | |
| 320 return db_.LookupParent(parentId, resourceId); | |
| 321 } | |
| 322 | |
| 4554 | 323 bool LookupResource(int64_t& id, |
| 324 ResourceType& type, | |
| 325 const std::string& publicId) | |
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326 { |
| 4554 | 327 return db_.LookupResource(id, type, publicId); |
| 328 } | |
| 329 | |
| 330 bool LookupResourceAndParent(int64_t& id, | |
| 331 ResourceType& type, | |
| 332 std::string& parentPublicId, | |
| 333 const std::string& publicId) | |
| 334 { | |
| 335 return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); | |
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336 } |
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337 }; |
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338 |
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339 |
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340 class ReadWriteTransaction : public ReadOnlyTransaction |
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341 { |
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342 public: |
| 4567 | 343 ReadWriteTransaction(IDatabaseWrapper& db, |
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344 ITransactionContext& context) : |
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345 ReadOnlyTransaction(db, context) |
| 4567 | 346 { |
| 347 } | |
| 348 | |
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349 void AddAttachment(int64_t id, |
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350 const FileInfo& attachment) |
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351 { |
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352 db_.AddAttachment(id, attachment); |
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353 } |
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354 |
| 4567 | 355 void ClearChanges() |
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356 { |
| 4567 | 357 db_.ClearChanges(); |
| 358 } | |
| 359 | |
| 360 void ClearExportedResources() | |
| 361 { | |
| 362 db_.ClearExportedResources(); | |
| 363 } | |
| 364 | |
| 4574 | 365 void ClearMainDicomTags(int64_t id) |
| 366 { | |
| 367 return db_.ClearMainDicomTags(id); | |
| 368 } | |
| 369 | |
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370 bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */ |
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371 int64_t& instanceId, /* out */ |
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372 const std::string& patient, |
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373 const std::string& study, |
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374 const std::string& series, |
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375 const std::string& instance) |
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376 { |
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377 return db_.CreateInstance(result, instanceId, patient, study, series, instance); |
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378 } |
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379 |
| 4568 | 380 void DeleteAttachment(int64_t id, |
| 381 FileContentType attachment) | |
| 382 { | |
| 383 return db_.DeleteAttachment(id, attachment); | |
| 384 } | |
| 385 | |
| 4567 | 386 void DeleteMetadata(int64_t id, |
| 387 MetadataType type) | |
| 388 { | |
| 389 db_.DeleteMetadata(id, type); | |
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390 } |
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391 |
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392 void DeleteResource(int64_t id) |
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393 { |
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394 db_.DeleteResource(id); |
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395 } |
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396 |
| 4567 | 397 void LogChange(int64_t internalId, |
| 398 ChangeType changeType, | |
| 399 ResourceType resourceType, | |
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400 const std::string& publicId); |
| 4567 | 401 |
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402 void LogExportedResource(const ExportedResource& resource) |
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403 { |
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404 db_.LogExportedResource(resource); |
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405 } |
| 4567 | 406 |
| 407 void SetGlobalProperty(GlobalProperty property, | |
| 408 const std::string& value) | |
| 409 { | |
| 410 db_.SetGlobalProperty(property, value); | |
| 411 } | |
| 412 | |
| 413 void SetMetadata(int64_t id, | |
| 414 MetadataType type, | |
| 415 const std::string& value) | |
| 416 { | |
| 417 return db_.SetMetadata(id, type, value); | |
| 418 } | |
| 419 | |
| 420 void SetProtectedPatient(int64_t internalId, | |
| 421 bool isProtected) | |
| 422 { | |
| 423 db_.SetProtectedPatient(internalId, isProtected); | |
| 424 } | |
| 4574 | 425 |
| 426 void SetResourcesContent(const ResourcesContent& content) | |
| 427 { | |
| 428 db_.SetResourcesContent(content); | |
| 429 } | |
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430 |
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431 void Recycle(uint64_t maximumStorageSize, |
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432 unsigned int maximumPatients, |
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433 uint64_t addedInstanceSize, |
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434 const std::string& newPatientId); |
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435 }; |
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436 |
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437 |
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438 class IReadOnlyOperations : public boost::noncopyable |
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439 { |
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440 public: |
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441 virtual ~IReadOnlyOperations() |
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442 { |
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443 } |
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444 |
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445 virtual void Apply(ReadOnlyTransaction& transaction) = 0; |
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446 }; |
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447 |
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448 |
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449 class IReadWriteOperations : public boost::noncopyable |
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450 { |
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451 public: |
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452 virtual ~IReadWriteOperations() |
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453 { |
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454 } |
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455 |
| 4573 | 456 virtual void Apply(ReadWriteTransaction& transaction) = 0; |
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457 }; |
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458 |
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459 private: |
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460 void ApplyInternal(IReadOnlyOperations* readOperations, |
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461 IReadWriteOperations* writeOperations); |
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462 |
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463 unsigned int maxRetries_; |
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464 |
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465 public: |
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466 void Apply(IReadOnlyOperations& operations); |
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467 |
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468 void Apply(IReadWriteOperations& operations); |
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469 |
| 4554 | 470 bool ExpandResource(Json::Value& target, |
| 471 const std::string& publicId, | |
| 472 ResourceType level); | |
| 473 | |
| 474 void GetAllMetadata(std::map<MetadataType, std::string>& target, | |
| 475 const std::string& publicId, | |
| 476 ResourceType level); | |
| 4555 | 477 |
| 478 void GetAllUuids(std::list<std::string>& target, | |
| 479 ResourceType resourceType); | |
| 480 | |
| 481 void GetAllUuids(std::list<std::string>& target, | |
| 482 ResourceType resourceType, | |
| 483 size_t since, | |
| 484 size_t limit); | |
| 485 | |
| 4558 | 486 void GetGlobalStatistics(/* out */ uint64_t& diskSize, |
| 487 /* out */ uint64_t& uncompressedSize, | |
| 488 /* out */ uint64_t& countPatients, | |
| 489 /* out */ uint64_t& countStudies, | |
| 490 /* out */ uint64_t& countSeries, | |
| 491 /* out */ uint64_t& countInstances); | |
| 492 | |
| 4555 | 493 bool LookupAttachment(FileInfo& attachment, |
| 494 const std::string& instancePublicId, | |
| 495 FileContentType contentType); | |
| 4558 | 496 |
| 497 void GetChanges(Json::Value& target, | |
| 498 int64_t since, | |
| 499 unsigned int maxResults); | |
| 500 | |
| 501 void GetLastChange(Json::Value& target); | |
| 502 | |
| 503 void GetExportedResources(Json::Value& target, | |
| 504 int64_t since, | |
| 505 unsigned int maxResults); | |
| 506 | |
| 507 void GetLastExportedResource(Json::Value& target); | |
| 508 | |
| 4559 | 509 bool IsProtectedPatient(const std::string& publicId); |
| 510 | |
| 511 void GetChildren(std::list<std::string>& result, | |
| 512 const std::string& publicId); | |
| 513 | |
| 514 void GetChildInstances(std::list<std::string>& result, | |
| 515 const std::string& publicId); | |
| 4560 | 516 |
| 517 bool LookupMetadata(std::string& target, | |
| 518 const std::string& publicId, | |
| 519 ResourceType expectedType, | |
| 520 MetadataType type); | |
| 521 | |
| 522 void ListAvailableAttachments(std::set<FileContentType>& target, | |
| 523 const std::string& publicId, | |
| 524 ResourceType expectedType); | |
| 525 | |
| 526 bool LookupParent(std::string& target, | |
| 527 const std::string& publicId); | |
| 4562 | 528 |
| 529 void GetResourceStatistics(/* out */ ResourceType& type, | |
| 530 /* out */ uint64_t& diskSize, | |
| 531 /* out */ uint64_t& uncompressedSize, | |
| 532 /* out */ unsigned int& countStudies, | |
| 533 /* out */ unsigned int& countSeries, | |
| 534 /* out */ unsigned int& countInstances, | |
| 535 /* out */ uint64_t& dicomDiskSize, | |
| 536 /* out */ uint64_t& dicomUncompressedSize, | |
| 537 const std::string& publicId); | |
| 538 | |
| 539 void LookupIdentifierExact(std::vector<std::string>& result, | |
| 540 ResourceType level, | |
| 541 const DicomTag& tag, | |
| 542 const std::string& value); | |
| 543 | |
| 544 bool LookupGlobalProperty(std::string& value, | |
| 545 GlobalProperty property); | |
| 546 | |
| 547 std::string GetGlobalProperty(GlobalProperty property, | |
| 548 const std::string& defaultValue); | |
| 549 | |
| 550 bool GetMainDicomTags(DicomMap& result, | |
| 551 const std::string& publicId, | |
| 552 ResourceType expectedType, | |
| 553 ResourceType levelOfInterest); | |
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554 |
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555 // Only applicable at the instance level |
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556 bool GetAllMainDicomTags(DicomMap& result, |
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557 const std::string& instancePublicId); |
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558 |
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559 bool LookupResourceType(ResourceType& type, |
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560 const std::string& publicId); |
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561 |
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562 bool LookupParent(std::string& target, |
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563 const std::string& publicId, |
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564 ResourceType parentType); |
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565 |
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566 void ApplyLookupResources(std::vector<std::string>& resourcesId, |
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567 std::vector<std::string>* instancesId, // Can be NULL if not needed |
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568 const DatabaseLookup& lookup, |
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569 ResourceType queryLevel, |
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570 size_t limit); |
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571 |
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572 bool DeleteResource(Json::Value& target /* out */, |
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573 const std::string& uuid, |
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574 ResourceType expectedType); |
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575 |
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576 void LogExportedResource(const std::string& publicId, |
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577 const std::string& remoteModality); |
| 4567 | 578 |
| 579 void SetProtectedPatient(const std::string& publicId, | |
| 580 bool isProtected); | |
| 581 | |
| 582 void SetMetadata(const std::string& publicId, | |
| 583 MetadataType type, | |
| 584 const std::string& value); | |
| 585 | |
| 586 void DeleteMetadata(const std::string& publicId, | |
| 587 MetadataType type); | |
| 588 | |
| 589 uint64_t IncrementGlobalSequence(GlobalProperty sequence); | |
| 590 | |
| 591 void DeleteChanges(); | |
| 592 | |
| 593 void DeleteExportedResources(); | |
| 594 | |
| 595 void SetGlobalProperty(GlobalProperty property, | |
| 596 const std::string& value); | |
| 4568 | 597 |
| 598 void DeleteAttachment(const std::string& publicId, | |
| 599 FileContentType type); | |
| 600 | |
| 601 void LogChange(ChangeType changeType, | |
| 4579 | 602 const std::string& publicId, |
| 603 ResourceType level); | |
| 4574 | 604 |
| 605 void ReconstructInstance(const ParsedDicomFile& dicom); | |
|
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606 |
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607 StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, |
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608 const DicomMap& dicomSummary, |
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609 const Attachments& attachments, |
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610 const MetadataMap& metadata, |
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611 const DicomInstanceOrigin& origin, |
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612 bool overwrite, |
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613 bool hasTransferSyntax, |
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614 DicomTransferSyntax transferSyntax, |
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615 bool hasPixelDataOffset, |
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616 uint64_t pixelDataOffset); |
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617 |
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618 StoreStatus AddAttachment(const FileInfo& attachment, |
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619 const std::string& publicId); |
| 0 | 620 }; |
| 621 } |