Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h @ 4731:283d246fafdb
fix broken "Do lookup" button in Orthanc Explorer
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Sun, 27 Jun 2021 12:48:26 +0200 |
| parents | 569d9ef165b1 |
| children | 248408d2b336 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
| 136 | 11 * |
| 0 | 12 * This program is distributed in the hope that it will be useful, but |
| 13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
| 0 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
| 0 | 20 **/ |
| 21 | |
| 22 | |
| 23 #pragma once | |
| 24 | |
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25 #include "ITagVisitor.h" |
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26 #include "../DicomFormat/DicomElement.h" |
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27 #include "../DicomFormat/DicomMap.h" |
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28 #include "../DicomFormat/DicomPath.h" |
| 791 | 29 |
| 0 | 30 #include <dcmtk/dcmdata/dcdatset.h> |
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31 #include <dcmtk/dcmdata/dcmetinf.h> |
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32 #include <dcmtk/dcmdata/dcpixseq.h> |
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33 #include <dcmtk/dcmdata/dcfilefo.h> |
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34 #include <json/value.h> |
| 0 | 35 |
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36 #if ORTHANC_ENABLE_DCMTK != 1 |
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37 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 |
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38 #endif |
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39 |
| 2126 | 40 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 41 # include <gtest/gtest_prod.h> | |
| 42 #endif | |
| 43 | |
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44 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) |
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45 # error The macro ORTHANC_ENABLE_DCMTK_JPEG must be defined |
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46 #endif |
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47 |
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48 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) |
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49 # error The macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined |
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50 #endif |
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51 |
| 2126 | 52 |
| 62 | 53 namespace Orthanc |
| 0 | 54 { |
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55 class ORTHANC_PUBLIC FromDcmtkBridge : public boost::noncopyable |
| 0 | 56 { |
| 2126 | 57 #if ORTHANC_BUILD_UNIT_TESTS == 1 |
| 58 FRIEND_TEST(FromDcmtkBridge, FromJson); | |
| 59 #endif | |
| 60 | |
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61 friend class ParsedDicomFile; |
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62 |
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63 public: |
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64 // New in Orthanc 1.9.4 |
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65 class ORTHANC_PUBLIC IDicomPathVisitor : public boost::noncopyable |
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66 { |
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67 public: |
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68 virtual ~IDicomPathVisitor() |
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69 { |
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70 } |
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71 |
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72 virtual void Visit(DcmItem& item, |
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73 const DicomPath& path) = 0; |
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74 }; |
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75 |
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76 |
| 2125 | 77 private: |
| 78 FromDcmtkBridge(); // Pure static class | |
| 79 | |
| 2126 | 80 static void DatasetToJson(Json::Value& parent, |
| 81 DcmItem& item, | |
| 82 DicomToJsonFormat format, | |
| 83 DicomToJsonFlags flags, | |
| 84 unsigned int maxStringLength, | |
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85 Encoding encoding, |
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86 bool hasCodeExtensions, |
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87 const std::set<DicomTag>& ignoreTagLength, |
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88 unsigned int depth); |
| 2126 | 89 |
| 90 static void ElementToJson(Json::Value& parent, | |
| 91 DcmElement& element, | |
| 92 DicomToJsonFormat format, | |
| 93 DicomToJsonFlags flags, | |
| 94 unsigned int maxStringLength, | |
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95 Encoding dicomEncoding, |
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96 bool hasCodeExtensions, |
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97 const std::set<DicomTag>& ignoreTagLength, |
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98 unsigned int depth); |
| 2126 | 99 |
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100 static void ChangeStringEncoding(DcmItem& dataset, |
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101 Encoding source, |
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102 bool hasSourceCodeExtensions, |
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103 Encoding target); |
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104 |
| 0 | 105 public: |
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106 /** |
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107 * Initialize DCMTK to use the default DICOM dictionaries (either |
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108 * embedded into the binaries for official releases, or using the |
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109 * environment variable "DCM_DICT_ENVIRONMENT_VARIABLE", or using |
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110 * the system-wide path to the DCMTK library for developers) |
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111 **/ |
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112 static void InitializeDictionary(bool loadPrivateDictionary); |
| 1656 | 113 |
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114 /** |
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115 * Replace the default DICOM dictionaries by the manually-provided |
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116 * external dictionaries. This is needed to use DICONDE for |
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117 * instance. Pay attention to the fact that the current dictionary |
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118 * will be reinitialized (all its tags are cleared). |
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119 **/ |
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120 static void LoadExternalDictionaries(const std::vector<std::string>& dictionaries); |
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121 |
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122 static void RegisterDictionaryTag(const DicomTag& tag, |
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123 ValueRepresentation vr, |
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124 const std::string& name, |
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125 unsigned int minMultiplicity, |
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126 unsigned int maxMultiplicity, |
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127 const std::string& privateCreator); |
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128 |
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129 static Encoding DetectEncoding(bool& hasCodeExtensions, |
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130 DcmItem& dataset, |
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131 Encoding defaultEncoding); |
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132 |
| 4297 | 133 // Compatibility wrapper for Orthanc <= 1.5.4 |
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134 static Encoding DetectEncoding(DcmItem& dataset, |
| 4297 | 135 Encoding defaultEncoding); |
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136 |
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137 static DicomTag Convert(const DcmTag& tag); |
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138 |
| 0 | 139 static DicomTag GetTag(const DcmElement& element); |
| 140 | |
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141 static bool IsUnknownTag(const DicomTag& tag); |
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142 |
|
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143 static DicomValue* ConvertLeafElement(DcmElement& element, |
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144 DicomToJsonFlags flags, |
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145 unsigned int maxStringLength, |
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146 Encoding encoding, |
|
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147 bool hasCodeExtensions, |
|
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148 const std::set<DicomTag>& ignoreTagLength); |
| 0 | 149 |
| 2126 | 150 static void ExtractHeaderAsJson(Json::Value& target, |
| 151 DcmMetaInfo& header, | |
| 152 DicomToJsonFormat format, | |
| 153 DicomToJsonFlags flags, | |
| 154 unsigned int maxStringLength); | |
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155 |
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156 static std::string GetTagName(const DicomTag& tag, |
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157 const std::string& privateCreator); |
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158 |
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159 static std::string GetTagName(const DcmElement& element); |
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160 |
| 4297 | 161 static std::string GetTagName(const DicomElement& element); |
| 0 | 162 |
| 304 | 163 static DicomTag ParseTag(const char* name); |
| 0 | 164 |
| 4297 | 165 static DicomTag ParseTag(const std::string& name); |
| 0 | 166 |
| 167 static bool HasTag(const DicomMap& fields, | |
| 4297 | 168 const std::string& tagName); |
| 0 | 169 |
| 170 static const DicomValue& GetValue(const DicomMap& fields, | |
| 4297 | 171 const std::string& tagName); |
| 0 | 172 |
| 173 static void SetValue(DicomMap& target, | |
| 174 const std::string& tagName, | |
| 4297 | 175 DicomValue* value); |
| 0 | 176 |
| 177 static void ToJson(Json::Value& result, | |
| 1368 | 178 const DicomMap& values, |
|
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179 DicomToJsonFormat format); |
| 176 | 180 |
| 788 | 181 static std::string GenerateUniqueIdentifier(ResourceType level); |
|
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182 |
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183 static bool SaveToMemoryBuffer(std::string& buffer, |
|
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DicomInstanceToStore
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184 DcmDataset& dataSet); |
| 1360 | 185 |
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186 static bool Transcode(DcmFileFormat& dicom, |
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187 DicomTransferSyntax syntax, |
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188 const DcmRepresentationParameter* representation); |
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189 |
|
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190 static ValueRepresentation Convert(DcmEVR vr); |
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191 |
|
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192 static ValueRepresentation LookupValueRepresentation(const DicomTag& tag); |
| 1689 | 193 |
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194 static DcmElement* CreateElementForTag(const DicomTag& tag, |
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195 const std::string& privateCreator); |
| 1689 | 196 |
| 197 static void FillElementWithString(DcmElement& element, | |
| 1695 | 198 const std::string& utf8alue, // Encoded using UTF-8 |
|
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199 bool decodeDataUriScheme, |
| 1695 | 200 Encoding dicomEncoding); |
| 1689 | 201 |
|
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202 static DcmElement* FromJson(const DicomTag& tag, |
|
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FromDcmtkBridge::FromJson
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203 const Json::Value& element, // Encoded using UTF-8 |
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204 bool decodeDataUriScheme, |
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205 Encoding dicomEncoding, |
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206 const std::string& privateCreator); |
|
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207 |
|
1924
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1900
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|
208 static DcmPixelSequence* GetPixelSequence(DcmDataset& dataset); |
|
1934
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FromDcmtkBridge::FromJson
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209 |
|
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FromDcmtkBridge::FromJson
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210 static Encoding ExtractEncoding(const Json::Value& json, |
|
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FromDcmtkBridge::FromJson
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|
211 Encoding defaultEncoding); |
|
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FromDcmtkBridge::FromJson
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212 |
|
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FromDcmtkBridge::FromJson
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213 static DcmDataset* FromJson(const Json::Value& json, // Encoded using UTF-8 |
|
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FromDcmtkBridge::FromJson
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214 bool generateIdentifiers, |
|
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FromDcmtkBridge::FromJson
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215 bool decodeDataUriScheme, |
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216 Encoding defaultEncoding, |
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|
217 const std::string& privateCreator); |
|
1935
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FromDcmtkBridge::LoadFromMemoryBuffer
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|
218 |
|
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FromDcmtkBridge::LoadFromMemoryBuffer
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1934
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219 static DcmFileFormat* LoadFromMemoryBuffer(const void* buffer, |
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1934
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changeset
|
220 size_t size); |
|
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
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221 |
|
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changeset
|
222 static void FromJson(DicomMap& values, |
|
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1936
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changeset
|
223 const Json::Value& result); |
|
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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224 |
|
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uncoupling DCMTK primitives from Orthanc::Configuration
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|
225 static void ExtractDicomSummary(DicomMap& target, |
|
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|
226 DcmItem& dataset, |
|
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Fix DICOM SCP filters if some query tag has more than 256 characters
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|
227 unsigned int maxStringLength, |
|
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228 const std::set<DicomTag>& ignoreTagLength); |
|
33cfcc74d1b1
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229 |
|
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230 static void ExtractDicomAsJson(Json::Value& target, |
|
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231 DcmDataset& dataset, |
|
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232 DicomToJsonFormat format, |
|
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233 DicomToJsonFlags flags, |
|
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234 unsigned int maxStringLength, |
|
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235 const std::set<DicomTag>& ignoreTagLength); |
|
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236 |
|
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237 static void InitializeCodecs(); |
|
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238 |
|
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changeset
|
239 static void FinalizeCodecs(); |
|
2499
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ITagVisitor - for anonymization relationships
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240 |
|
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ITagVisitor - for anonymization relationships
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241 static void Apply(DcmItem& dataset, |
|
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242 ITagVisitor& visitor, |
|
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243 Encoding defaultEncoding); |
|
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auto-generation of primitives to handle transfer syntaxes
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244 |
|
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creating IDicomTranscoder abstraction
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245 static bool LookupDcmtkTransferSyntax(E_TransferSyntax& target, |
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246 DicomTransferSyntax source); |
|
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247 |
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248 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
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|
249 E_TransferSyntax source); |
| 3881 | 250 |
| 251 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, | |
|
3882
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implemented IDicomTranscoder::Store()
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|
252 DcmFileFormat& dicom); |
|
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Fix access to videos as a single raw frame
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253 |
|
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Fix access to videos as a single raw frame
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254 static bool LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
|
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Fix access to videos as a single raw frame
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255 DcmDataset& dicom); |
|
4501
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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256 |
|
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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257 static void LogMissingTagsForStore(DcmDataset& dicom); |
|
4682
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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258 |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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259 static void Apply(IDicomPathVisitor& visitor, |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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260 DcmDataset& dataset, |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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changeset
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261 const DicomPath& path); |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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262 |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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263 static void RemovePath(DcmDataset& dataset, |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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264 const DicomPath& path); |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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265 |
|
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use of DicomPath in ParsedDicomFile
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266 static void ClearPath(DcmDataset& dataset, |
|
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267 const DicomPath& path, |
|
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268 bool onlyIfExists); |
|
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269 |
|
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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changeset
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270 static void ReplacePath(DcmDataset& dataset, |
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d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4514
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changeset
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271 const DicomPath& path, |
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4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
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272 const DcmElement& element, |
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7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
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273 DicomReplaceMode mode); |
| 0 | 274 }; |
| 275 } |