Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/DicomStructureSet.h @ 1327:4f8db2d202c8 broker

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OrthancSeriesProgressiveLoader now has two modes that can be selected at object creation : - progressive (will first load jpeg50, then jpeg90 then PAM) - non-progressive (will directly load PAM (uncompressed)) Please note that the slice loading order remains dynamic and depending upon the slice that the client code wishes to extract from the volume.
author Benjamin Golinvaux <bgo@osimis.io>
date Wed, 25 Mar 2020 14:34:27 +0100
parents 7ec8fea061b9
children 30deba7bc8e2
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #pragma once
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24 #if !defined(ORTHANC_ENABLE_DCMTK)
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25 # error The macro ORTHANC_ENABLE_DCMTK must be defined
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26 #endif
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28 #include "DicomStructureSetUtils.h"
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29 #include "CoordinateSystem3D.h"
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30 #include "Extent2D.h"
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31 #include "../Scene2D/Color.h"
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32 #include "../Scene2D/PolylineSceneLayer.h"
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34 #if ORTHANC_ENABLE_DCMTK == 1
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35 # include <Core/DicomParsing/ParsedDicomFile.h>
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36 #endif
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37
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38 //#define USE_BOOST_UNION_FOR_POLYGONS 1
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40 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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42 #include <list>
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44 namespace OrthancStone
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45 {
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46 class DicomStructureSet : public boost::noncopyable
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47 {
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48 private:
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49 struct ReferencedSlice
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50 {
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51 std::string seriesInstanceUid_;
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52 CoordinateSystem3D geometry_;
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53 double thickness_;
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54
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55 ReferencedSlice()
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56 {
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57 }
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58
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59 ReferencedSlice(const std::string& seriesInstanceUid,
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60 const CoordinateSystem3D& geometry,
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61 double thickness) :
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62 seriesInstanceUid_(seriesInstanceUid),
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63 geometry_(geometry),
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64 thickness_(thickness)
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65 {
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66 }
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67 };
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68
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69 typedef std::map<std::string, ReferencedSlice> ReferencedSlices;
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71 typedef std::vector<Vector> Points;
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73 class Polygon
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74 {
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75 private:
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76 std::string sopInstanceUid_;
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77 bool hasSlice_;
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78 CoordinateSystem3D geometry_;
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79 double projectionAlongNormal_;
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80 double sliceThickness_; // In millimeters
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81 Points points_;
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82 Extent2D extent_;
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83
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84 void CheckPointIsOnSlice(const Vector& v) const;
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85 bool IsPointOnSliceIfAny(const Vector& v) const;
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86
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87 public:
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88 Polygon(const std::string& sopInstanceUid) :
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89 sopInstanceUid_(sopInstanceUid),
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90 hasSlice_(false)
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91 {
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92 }
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93
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94 void Reserve(size_t n)
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95 {
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96 points_.reserve(n);
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97 }
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98
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99 void AddPoint(const Vector& v);
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100
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101 bool UpdateReferencedSlice(const ReferencedSlices& slices);
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102
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103 bool IsOnSlice(const CoordinateSystem3D& geometry) const;
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104
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105 const Vector& GetGeometryOrigin() const
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106 {
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107 return geometry_.GetOrigin();
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108 }
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110 const std::string& GetSopInstanceUid() const
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111 {
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112 return sopInstanceUid_;
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113 }
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114
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115 const Points& GetPoints() const
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116 {
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117 return points_;
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118 }
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119
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120 double GetSliceThickness() const
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121 {
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122 return sliceThickness_;
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123 }
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124
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125 bool Project(double& x1,
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126 double& y1,
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127 double& x2,
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128 double& y2,
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129 const CoordinateSystem3D& slice) const;
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130 };
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131
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132 typedef std::list<Polygon> Polygons;
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133
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134 struct Structure
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135 {
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136 std::string name_;
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137 std::string interpretation_;
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138 Polygons polygons_;
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139 uint8_t red_;
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140 uint8_t green_;
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141 uint8_t blue_;
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142 };
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143
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144 typedef std::vector<Structure> Structures;
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145
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146 Structures structures_;
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147 ReferencedSlices referencedSlices_;
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148
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149 void Setup(const OrthancPlugins::IDicomDataset& dataset);
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150
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151 const Structure& GetStructure(size_t index) const;
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152
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153 Structure& GetStructure(size_t index);
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154
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155 bool ProjectStructure(
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156 #if USE_BOOST_UNION_FOR_POLYGONS == 1
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157 std::vector< std::vector<Point2D> >& polygons,
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158 #else
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159 std::vector< std::pair<Point2D, Point2D> >& segments,
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160 #endif
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161 const Structure& structure,
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162 const CoordinateSystem3D& slice) const;
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163
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164 public:
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165 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance)
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166 {
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167 Setup(instance);
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168 }
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169
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170 #if ORTHANC_ENABLE_DCMTK == 1
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171 DicomStructureSet(Orthanc::ParsedDicomFile& instance);
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172 #endif
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173
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174 size_t GetStructuresCount() const
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175 {
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176 return structures_.size();
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177 }
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178
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179 Vector GetStructureCenter(size_t index) const;
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180
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181 const std::string& GetStructureName(size_t index) const;
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182
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183 const std::string& GetStructureInterpretation(size_t index) const;
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184
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185 Color GetStructureColor(size_t index) const;
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186
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187 // TODO - remove
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188 void GetStructureColor(uint8_t& red,
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189 uint8_t& green,
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190 uint8_t& blue,
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191 size_t index) const;
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192
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193 void GetReferencedInstances(std::set<std::string>& instances);
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194
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195 void AddReferencedSlice(const std::string& sopInstanceUid,
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196 const std::string& seriesInstanceUid,
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197 const CoordinateSystem3D& geometry,
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198 double thickness);
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199
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200 void AddReferencedSlice(const Orthanc::DicomMap& dataset);
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201
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202 void CheckReferencedSlices();
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203
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204 Vector GetNormal() const;
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205
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206 #if USE_BOOST_UNION_FOR_POLYGONS == 1
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207 bool ProjectStructure(std::vector< std::vector<Point2D> >& polygons,
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208 size_t index,
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209 const CoordinateSystem3D& slice) const
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210 {
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211 return ProjectStructure(polygons, GetStructure(index), slice);
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212 }
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213 #else
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214 bool ProjectStructure(std::vector< std::pair<Point2D, Point2D> >& segments,
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215 size_t index,
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216 const CoordinateSystem3D& slice) const
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217 {
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218 return ProjectStructure(segments, GetStructure(index), slice);
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219 }
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220 #endif
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221
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222 void ProjectOntoLayer(PolylineSceneLayer& layer,
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223 const CoordinateSystem3D& plane,
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224 size_t structureIndex,
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225 const Color& color) const;
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226
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227 void ProjectOntoLayer(PolylineSceneLayer& layer,
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228 const CoordinateSystem3D& plane,
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229 size_t structureIndex) const
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230 {
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231 ProjectOntoLayer(layer, plane, structureIndex, GetStructureColor(structureIndex));
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232 }
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233 };
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234 }