Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/DicomStructureSet.h @ 804:61ba4b504e9a

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PolylineSceneLayer now has one color per chain
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 28 May 2019 15:58:21 +0200
parents 04f518ebd132
children c20dbaab360c
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #pragma once
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23
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24 #include "CoordinateSystem3D.h"
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25 #include "Extent2D.h"
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26 #include "../Scene2D/Color.h"
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28 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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30 #include <list>
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32 namespace OrthancStone
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33 {
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34 class DicomStructureSet : public boost::noncopyable
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35 {
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36 public:
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37 typedef std::pair<double, double> PolygonPoint;
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39 private:
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40 struct ReferencedSlice
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41 {
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42 std::string seriesInstanceUid_;
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43 CoordinateSystem3D geometry_;
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44 double thickness_;
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45
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46 ReferencedSlice()
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47 {
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48 }
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49
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50 ReferencedSlice(const std::string& seriesInstanceUid,
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51 const CoordinateSystem3D& geometry,
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52 double thickness) :
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53 seriesInstanceUid_(seriesInstanceUid),
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54 geometry_(geometry),
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55 thickness_(thickness)
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56 {
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57 }
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58 };
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59
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60 typedef std::map<std::string, ReferencedSlice> ReferencedSlices;
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61
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62 typedef std::vector<Vector> Points;
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64 class Polygon
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65 {
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66 private:
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67 std::string sopInstanceUid_;
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68 bool hasSlice_;
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69 CoordinateSystem3D geometry_;
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70 double projectionAlongNormal_;
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71 double sliceThickness_; // In millimeters
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72 Points points_;
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73 Extent2D extent_;
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75 void CheckPoint(const Vector& v);
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76
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77 public:
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78 Polygon(const std::string& sopInstanceUid) :
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79 sopInstanceUid_(sopInstanceUid),
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80 hasSlice_(false)
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81 {
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82 }
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83
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84 void Reserve(size_t n)
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85 {
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86 points_.reserve(n);
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87 }
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88
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89 void AddPoint(const Vector& v);
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90
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91 bool UpdateReferencedSlice(const ReferencedSlices& slices);
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92
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93 bool IsOnSlice(const CoordinateSystem3D& geometry) const;
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94
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95 const std::string& GetSopInstanceUid() const
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96 {
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97 return sopInstanceUid_;
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98 }
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99
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100 const Points& GetPoints() const
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101 {
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102 return points_;
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103 }
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104
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105 double GetSliceThickness() const
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106 {
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107 return sliceThickness_;
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108 }
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109
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110 bool Project(double& x1,
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111 double& y1,
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112 double& x2,
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113 double& y2,
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114 const CoordinateSystem3D& slice) const;
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115 };
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116
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117 typedef std::list<Polygon> Polygons;
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118
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119 struct Structure
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120 {
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121 std::string name_;
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122 std::string interpretation_;
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123 Polygons polygons_;
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124 uint8_t red_;
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125 uint8_t green_;
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126 uint8_t blue_;
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127 };
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128
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129 typedef std::vector<Structure> Structures;
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131 Structures structures_;
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132 ReferencedSlices referencedSlices_;
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134 const Structure& GetStructure(size_t index) const;
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135
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136 Structure& GetStructure(size_t index);
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137
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138 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
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139 const Structure& structure,
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140 const CoordinateSystem3D& slice) const;
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142 public:
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143 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance);
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144
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145 size_t GetStructuresCount() const
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146 {
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147 return structures_.size();
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148 }
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149
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150 Vector GetStructureCenter(size_t index) const;
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151
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152 const std::string& GetStructureName(size_t index) const;
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153
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154 const std::string& GetStructureInterpretation(size_t index) const;
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155
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156 Color GetStructureColor(size_t index) const;
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157
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158 // TODO - remove
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159 void GetStructureColor(uint8_t& red,
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160 uint8_t& green,
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161 uint8_t& blue,
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162 size_t index) const;
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163
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164 void GetReferencedInstances(std::set<std::string>& instances);
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165
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166 void AddReferencedSlice(const std::string& sopInstanceUid,
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167 const std::string& seriesInstanceUid,
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168 const CoordinateSystem3D& geometry,
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169 double thickness);
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170
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171 void AddReferencedSlice(const Orthanc::DicomMap& dataset);
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172
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173 void CheckReferencedSlices();
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174
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175 Vector GetNormal() const;
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176
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177 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
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178 size_t index,
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179 const CoordinateSystem3D& slice) const
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180 {
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181 return ProjectStructure(polygons, GetStructure(index), slice);
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182 }
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183 };
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184 }