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annotate Framework/Toolbox/DicomStructureSet.h @ 1178:3c7cdbf32e2a broker

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DicomStructureSet::ProjectOntoLayer()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 20 Nov 2019 14:12:11 +0100
parents 1644de437a7b
children 9c8f557ea799
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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23
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24 #include "DicomStructureSetUtils.h"
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25 #include "CoordinateSystem3D.h"
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26 #include "Extent2D.h"
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27 #include "../Scene2D/Color.h"
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28 #include "../Scene2D/PolylineSceneLayer.h"
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29
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30 //#define USE_BOOST_UNION_FOR_POLYGONS 1
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31
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32 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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34 #include <list>
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35
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36 namespace OrthancStone
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37 {
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38 class DicomStructureSet : public boost::noncopyable
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39 {
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40 private:
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41 struct ReferencedSlice
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42 {
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43 std::string seriesInstanceUid_;
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44 CoordinateSystem3D geometry_;
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45 double thickness_;
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46
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47 ReferencedSlice()
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48 {
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49 }
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51 ReferencedSlice(const std::string& seriesInstanceUid,
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52 const CoordinateSystem3D& geometry,
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53 double thickness) :
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54 seriesInstanceUid_(seriesInstanceUid),
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55 geometry_(geometry),
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56 thickness_(thickness)
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57 {
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58 }
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59 };
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60
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61 typedef std::map<std::string, ReferencedSlice> ReferencedSlices;
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62
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63 typedef std::vector<Vector> Points;
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65 class Polygon
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66 {
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67 private:
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68 std::string sopInstanceUid_;
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69 bool hasSlice_;
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70 CoordinateSystem3D geometry_;
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71 double projectionAlongNormal_;
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72 double sliceThickness_; // In millimeters
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73 Points points_;
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74 Extent2D extent_;
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76 void CheckPointIsOnSlice(const Vector& v) const;
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77 bool IsPointOnSliceIfAny(const Vector& v) const;
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78
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79 public:
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80 Polygon(const std::string& sopInstanceUid) :
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81 sopInstanceUid_(sopInstanceUid),
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82 hasSlice_(false)
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83 {
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84 }
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85
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86 void Reserve(size_t n)
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87 {
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88 points_.reserve(n);
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89 }
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91 void AddPoint(const Vector& v);
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92
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93 bool UpdateReferencedSlice(const ReferencedSlices& slices);
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94
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95 bool IsOnSlice(const CoordinateSystem3D& geometry) const;
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96
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97 const Vector& GetGeometryOrigin() const
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98 {
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99 return geometry_.GetOrigin();
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100 }
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101
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102 const std::string& GetSopInstanceUid() const
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103 {
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104 return sopInstanceUid_;
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105 }
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106
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107 const Points& GetPoints() const
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108 {
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109 return points_;
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110 }
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111
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112 double GetSliceThickness() const
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113 {
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114 return sliceThickness_;
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115 }
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116
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117 bool Project(double& x1,
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118 double& y1,
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119 double& x2,
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120 double& y2,
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121 const CoordinateSystem3D& slice) const;
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122 };
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123
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124 typedef std::list<Polygon> Polygons;
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125
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126 struct Structure
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127 {
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128 std::string name_;
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129 std::string interpretation_;
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130 Polygons polygons_;
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131 uint8_t red_;
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132 uint8_t green_;
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133 uint8_t blue_;
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134 };
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135
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136 typedef std::vector<Structure> Structures;
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137
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138 Structures structures_;
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139 ReferencedSlices referencedSlices_;
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140
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141 const Structure& GetStructure(size_t index) const;
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142
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143 Structure& GetStructure(size_t index);
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144
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145 bool ProjectStructure(
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146 #if USE_BOOST_UNION_FOR_POLYGONS == 1
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147 std::vector< std::vector<Point2D> >& polygons,
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148 #else
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149 std::vector< std::pair<Point2D, Point2D> >& segments,
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150 #endif
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151 const Structure& structure,
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152 const CoordinateSystem3D& slice) const;
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153
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154 public:
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155 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance);
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156
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157 size_t GetStructuresCount() const
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158 {
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159 return structures_.size();
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160 }
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161
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162 Vector GetStructureCenter(size_t index) const;
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163
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164 const std::string& GetStructureName(size_t index) const;
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165
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166 const std::string& GetStructureInterpretation(size_t index) const;
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167
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168 Color GetStructureColor(size_t index) const;
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169
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170 // TODO - remove
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171 void GetStructureColor(uint8_t& red,
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172 uint8_t& green,
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173 uint8_t& blue,
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174 size_t index) const;
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175
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176 void GetReferencedInstances(std::set<std::string>& instances);
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177
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178 void AddReferencedSlice(const std::string& sopInstanceUid,
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179 const std::string& seriesInstanceUid,
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180 const CoordinateSystem3D& geometry,
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181 double thickness);
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182
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183 void AddReferencedSlice(const Orthanc::DicomMap& dataset);
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184
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185 void CheckReferencedSlices();
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186
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187 Vector GetNormal() const;
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188
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189 #if USE_BOOST_UNION_FOR_POLYGONS == 1
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190 bool ProjectStructure(std::vector< std::vector<Point2D> >& polygons,
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191 size_t index,
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192 const CoordinateSystem3D& slice) const
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193 {
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194 return ProjectStructure(polygons, GetStructure(index), slice);
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195 }
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196 #else
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197 bool ProjectStructure(std::vector< std::pair<Point2D, Point2D> >& segments,
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198 size_t index,
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199 const CoordinateSystem3D& slice) const
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200 {
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201 return ProjectStructure(segments, GetStructure(index), slice);
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202 }
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203 #endif
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204
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205 void ProjectOntoLayer(PolylineSceneLayer& layer,
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206 const CoordinateSystem3D& plane,
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207 size_t structureIndex,
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208 const Color& color) const;
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209
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210 void ProjectOntoLayer(PolylineSceneLayer& layer,
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211 const CoordinateSystem3D& plane,
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212 size_t structureIndex) const
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213 {
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214 ProjectOntoLayer(layer, plane, structureIndex, GetStructureColor(structureIndex));
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215 }
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216 };
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217 }