Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/DicomStructureSet.h @ 196:fccffbf99ba1 wasm

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integration mainline->wasm
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 20 Mar 2018 20:02:10 +0100
parents e2fe9352f240 4cff7b1ed31d
children e9c7a78a3e77
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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23
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24 #include "CoordinateSystem3D.h"
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25 #include "Extent2D.h"
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27 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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28 #include <list>
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29
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30 namespace OrthancStone
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31 {
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32 class DicomStructureSet : public boost::noncopyable
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33 {
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34 public:
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35 typedef std::pair<double, double> PolygonPoint;
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36
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37 private:
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38 struct ReferencedSlice
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39 {
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40 std::string seriesInstanceUid_;
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41 CoordinateSystem3D geometry_;
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42 double thickness_;
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43
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44 ReferencedSlice()
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45 {
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46 }
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48 ReferencedSlice(const std::string& seriesInstanceUid,
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49 const CoordinateSystem3D& geometry,
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50 double thickness) :
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51 seriesInstanceUid_(seriesInstanceUid),
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52 geometry_(geometry),
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53 thickness_(thickness)
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54 {
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55 }
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56 };
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57
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58 typedef std::map<std::string, ReferencedSlice> ReferencedSlices;
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59
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60 typedef std::vector<Vector> Points;
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62 class Polygon
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63 {
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64 private:
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65 std::string sopInstanceUid_;
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66 bool hasSlice_;
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67 CoordinateSystem3D geometry_;
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68 double projectionAlongNormal_;
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69 double sliceThickness_; // In millimeters
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70 Points points_;
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71 Extent2D extent_;
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73 void CheckPoint(const Vector& v);
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74
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75 public:
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76 Polygon(const std::string& sopInstanceUid) :
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77 sopInstanceUid_(sopInstanceUid),
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78 hasSlice_(false)
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79 {
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80 }
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81
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82 void Reserve(size_t n)
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83 {
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84 points_.reserve(n);
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85 }
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86
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87 void AddPoint(const Vector& v);
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88
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89 bool UpdateReferencedSlice(const ReferencedSlices& slices);
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90
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91 bool IsOnSlice(const CoordinateSystem3D& geometry) const;
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92
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93 const std::string& GetSopInstanceUid() const
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94 {
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95 return sopInstanceUid_;
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96 }
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97
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98 const Points& GetPoints() const
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99 {
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100 return points_;
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101 }
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102
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103 double GetSliceThickness() const
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104 {
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105 return sliceThickness_;
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106 }
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107
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108 bool Project(double& x1,
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109 double& y1,
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110 double& x2,
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111 double& y2,
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112 const CoordinateSystem3D& slice) const;
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113 };
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114
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115 typedef std::list<Polygon> Polygons;
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116
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117 struct Structure
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118 {
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119 std::string name_;
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120 std::string interpretation_;
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121 Polygons polygons_;
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122 uint8_t red_;
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123 uint8_t green_;
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124 uint8_t blue_;
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125 };
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126
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127 typedef std::vector<Structure> Structures;
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128
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129 Structures structures_;
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130 ReferencedSlices referencedSlices_;
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132 const Structure& GetStructure(size_t index) const;
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133
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134 Structure& GetStructure(size_t index);
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135
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136 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
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137 Structure& structure,
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138 const CoordinateSystem3D& slice);
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140 public:
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141 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance);
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142
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143 size_t GetStructureCount() const
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144 {
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145 return structures_.size();
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146 }
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147
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148 Vector GetStructureCenter(size_t index) const;
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149
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150 const std::string& GetStructureName(size_t index) const;
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151
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152 const std::string& GetStructureInterpretation(size_t index) const;
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153
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154 void GetStructureColor(uint8_t& red,
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155 uint8_t& green,
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156 uint8_t& blue,
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157 size_t index) const;
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158
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159 void GetReferencedInstances(std::set<std::string>& instances);
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160
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161 void AddReferencedSlice(const std::string& sopInstanceUid,
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162 const std::string& seriesInstanceUid,
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163 const CoordinateSystem3D& geometry,
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164 double thickness);
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165
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166 void AddReferencedSlice(const Orthanc::DicomMap& dataset);
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167
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168 void CheckReferencedSlices();
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169
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170 Vector GetNormal() const;
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171
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172 static DicomStructureSet* SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc,
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173 const std::string& instanceId);
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174
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175 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
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176 size_t index,
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177 const CoordinateSystem3D& slice)
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178 {
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179 return ProjectStructure(polygons, GetStructure(index), slice);
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180 }
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181 };
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182 }