Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/DicomStructureSet.h @ 1006:4f28d9459e31 toa2019092001

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Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
author Benjamin Golinvaux <bgo@osimis.io>
date Fri, 20 Sep 2019 12:13:10 +0200
parents 50e5acf5553b
children 709aa65aca17 2d8ab34c8c91
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #pragma once
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24 #include "DicomStructureSetUtils.h"
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25 #include "CoordinateSystem3D.h"
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26 #include "Extent2D.h"
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27 #include "../Scene2D/Color.h"
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29 //#define USE_BOOST_UNION_FOR_POLYGONS 1
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31 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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33 #include <list>
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34
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35 namespace OrthancStone
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36 {
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37 class DicomStructureSet : public boost::noncopyable
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38 {
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39 private:
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40 struct ReferencedSlice
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41 {
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42 std::string seriesInstanceUid_;
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43 CoordinateSystem3D geometry_;
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44 double thickness_;
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45
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46 ReferencedSlice()
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47 {
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48 }
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49
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50 ReferencedSlice(const std::string& seriesInstanceUid,
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51 const CoordinateSystem3D& geometry,
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52 double thickness) :
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53 seriesInstanceUid_(seriesInstanceUid),
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54 geometry_(geometry),
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55 thickness_(thickness)
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56 {
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57 }
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58 };
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59
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60 typedef std::map<std::string, ReferencedSlice> ReferencedSlices;
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61
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62 typedef std::vector<Vector> Points;
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64 class Polygon
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65 {
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66 private:
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67 std::string sopInstanceUid_;
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68 bool hasSlice_;
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69 CoordinateSystem3D geometry_;
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70 double projectionAlongNormal_;
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71 double sliceThickness_; // In millimeters
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72 Points points_;
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73 Extent2D extent_;
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75 void CheckPointIsOnSlice(const Vector& v) const;
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76 bool IsPointOnSliceIfAny(const Vector& v) const;
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77
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78 public:
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79 Polygon(const std::string& sopInstanceUid) :
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80 sopInstanceUid_(sopInstanceUid),
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81 hasSlice_(false)
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82 {
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83 }
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84
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85 void Reserve(size_t n)
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86 {
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87 points_.reserve(n);
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88 }
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89
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90 void AddPoint(const Vector& v);
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91
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92 bool UpdateReferencedSlice(const ReferencedSlices& slices);
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93
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94 bool IsOnSlice(const CoordinateSystem3D& geometry) const;
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95
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96 const Vector& GetGeometryOrigin() const
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97 {
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98 return geometry_.GetOrigin();
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99 }
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100
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101 const std::string& GetSopInstanceUid() const
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102 {
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103 return sopInstanceUid_;
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104 }
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105
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106 const Points& GetPoints() const
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107 {
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108 return points_;
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109 }
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110
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111 double GetSliceThickness() const
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112 {
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113 return sliceThickness_;
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114 }
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115
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116 bool Project(double& x1,
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117 double& y1,
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118 double& x2,
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119 double& y2,
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120 const CoordinateSystem3D& slice) const;
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121 };
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122
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123 typedef std::list<Polygon> Polygons;
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124
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125 struct Structure
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126 {
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127 std::string name_;
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128 std::string interpretation_;
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129 Polygons polygons_;
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130 uint8_t red_;
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131 uint8_t green_;
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132 uint8_t blue_;
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133 };
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134
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135 typedef std::vector<Structure> Structures;
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136
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137 Structures structures_;
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138 ReferencedSlices referencedSlices_;
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139
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140 const Structure& GetStructure(size_t index) const;
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141
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142 Structure& GetStructure(size_t index);
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143
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144 #ifdef USE_BOOST_UNION_FOR_POLYGONS
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145 bool ProjectStructure(std::vector< std::vector<Point2D> >& polygons,
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146 const Structure& structure,
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147 const CoordinateSystem3D& slice) const;
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148 #else
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149 bool ProjectStructure(std::vector< std::pair<Point2D, Point2D> >& segments,
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150 const Structure& structure,
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151 const CoordinateSystem3D& slice) const;
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152 #endif
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153 public:
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154 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance);
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155
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156 size_t GetStructuresCount() const
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157 {
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158 return structures_.size();
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159 }
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160
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161 Vector GetStructureCenter(size_t index) const;
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162
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163 const std::string& GetStructureName(size_t index) const;
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164
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165 const std::string& GetStructureInterpretation(size_t index) const;
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166
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167 Color GetStructureColor(size_t index) const;
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168
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169 // TODO - remove
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170 void GetStructureColor(uint8_t& red,
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171 uint8_t& green,
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172 uint8_t& blue,
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173 size_t index) const;
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174
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175 void GetReferencedInstances(std::set<std::string>& instances);
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176
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177 void AddReferencedSlice(const std::string& sopInstanceUid,
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178 const std::string& seriesInstanceUid,
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179 const CoordinateSystem3D& geometry,
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180 double thickness);
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181
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182 void AddReferencedSlice(const Orthanc::DicomMap& dataset);
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183
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184 void CheckReferencedSlices();
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185
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186 Vector GetNormal() const;
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187
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188 #ifdef USE_BOOST_UNION_FOR_POLYGONS
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189 bool ProjectStructure(std::vector< std::vector<Point2D> >& polygons,
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190 size_t index,
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191 const CoordinateSystem3D& slice) const
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192 {
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193 return ProjectStructure(polygons, GetStructure(index), slice);
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194 }
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195 #else
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196 bool ProjectStructure(std::vector< std::pair<Point2D, Point2D> >& segments,
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197 size_t index,
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198 const CoordinateSystem3D& slice) const
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199 {
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200 return ProjectStructure(segments, GetStructure(index), slice);
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201 }
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202 #endif
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203 };
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204 }