Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.cpp @ 4764:cc02a2aa8bab
integration Orthanc-1.9.6->mainline
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 09 Aug 2021 08:50:04 +0200 |
parents | 979ae3ea3381 |
children | 248408d2b336 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
136 | 11 * |
0 | 12 * This program is distributed in the hope that it will be useful, but |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
0 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
0 | 20 **/ |
21 | |
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22 |
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23 #include "../PrecompiledHeaders.h" |
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24 |
71 | 25 #ifndef NOMINMAX |
26 #define NOMINMAX | |
27 #endif | |
0 | 28 |
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29 #if !defined(ORTHANC_SANDBOXED) |
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30 # error The macro ORTHANC_SANDBOXED must be defined |
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31 #endif |
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32 |
3117 | 33 #if !defined(DCMTK_VERSION_NUMBER) |
34 # error The macro DCMTK_VERSION_NUMBER must be defined | |
35 #endif | |
36 | |
0 | 37 #include "FromDcmtkBridge.h" |
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38 #include "ToDcmtkBridge.h" |
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39 #include "../Compatibility.h" |
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40 #include "../Logging.h" |
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41 #include "../Toolbox.h" |
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42 #include "../OrthancException.h" |
0 | 43 |
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44 #if ORTHANC_SANDBOXED == 0 |
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45 # include "../TemporaryFile.h" |
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46 #endif |
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47 |
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48 #include <list> |
71 | 49 #include <limits> |
50 | |
0 | 51 #include <boost/lexical_cast.hpp> |
1656 | 52 #include <boost/filesystem.hpp> |
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53 #include <boost/algorithm/string/predicate.hpp> |
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54 #include <boost/algorithm/string/join.hpp> |
0 | 55 |
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56 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 57 #include <dcmtk/dcmdata/dcdicent.h> |
58 #include <dcmtk/dcmdata/dcdict.h> | |
59 #include <dcmtk/dcmdata/dcfilefo.h> | |
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60 #include <dcmtk/dcmdata/dcistrmb.h> |
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61 #include <dcmtk/dcmdata/dcostrmb.h> |
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62 #include <dcmtk/dcmdata/dcpixel.h> |
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63 #include <dcmtk/dcmdata/dcuid.h> |
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64 #include <dcmtk/dcmdata/dcxfer.h> |
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65 |
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66 #include <dcmtk/dcmdata/dcvrae.h> |
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67 #include <dcmtk/dcmdata/dcvras.h> |
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68 #include <dcmtk/dcmdata/dcvrat.h> |
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69 #include <dcmtk/dcmdata/dcvrcs.h> |
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70 #include <dcmtk/dcmdata/dcvrda.h> |
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71 #include <dcmtk/dcmdata/dcvrds.h> |
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72 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 73 #include <dcmtk/dcmdata/dcvrfd.h> |
74 #include <dcmtk/dcmdata/dcvrfl.h> | |
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75 #include <dcmtk/dcmdata/dcvris.h> |
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76 #include <dcmtk/dcmdata/dcvrlo.h> |
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77 #include <dcmtk/dcmdata/dcvrlt.h> |
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78 #include <dcmtk/dcmdata/dcvrpn.h> |
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79 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 80 #include <dcmtk/dcmdata/dcvrsl.h> |
81 #include <dcmtk/dcmdata/dcvrss.h> | |
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82 #include <dcmtk/dcmdata/dcvrst.h> |
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83 #include <dcmtk/dcmdata/dcvrtm.h> |
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84 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 85 #include <dcmtk/dcmdata/dcvrul.h> |
86 #include <dcmtk/dcmdata/dcvrus.h> | |
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87 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 88 |
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89 #if DCMTK_VERSION_NUMBER >= 361 |
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90 # include <dcmtk/dcmdata/dcvruc.h> |
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91 # include <dcmtk/dcmdata/dcvrur.h> |
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92 #endif |
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93 |
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94 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
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95 # include <OrthancFrameworkResources.h> |
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96 #endif |
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97 |
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98 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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99 # include <dcmtk/dcmjpeg/djdecode.h> |
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100 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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101 # include <dcmtk/dcmjpeg/djencode.h> |
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102 # endif |
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103 #endif |
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104 |
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105 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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106 # include <dcmtk/dcmjpls/djdecode.h> |
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107 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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108 # include <dcmtk/dcmjpls/djencode.h> |
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109 # endif |
1930 | 110 #endif |
111 | |
112 | |
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113 #include <dcmtk/dcmdata/dcrledrg.h> |
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114 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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115 # include <dcmtk/dcmdata/dcrleerg.h> |
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116 # include <dcmtk/dcmimage/diregist.h> // include to support color images |
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117 #endif |
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118 |
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119 |
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120 static bool hasExternalDictionaries_ = false; |
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121 |
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122 |
62 | 123 namespace Orthanc |
0 | 124 { |
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125 static bool IsBinaryTag(const DcmTag& key) |
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126 { |
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127 return (key.isUnknownVR() || |
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128 key.getEVR() == EVR_OB || |
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129 key.getEVR() == EVR_OW || |
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130 key.getEVR() == EVR_UN || |
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131 key.getEVR() == EVR_ox); |
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132 } |
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133 |
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134 |
1656 | 135 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
136 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
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137 FrameworkResources::FileResourceId resource) |
1656 | 138 { |
2017 | 139 std::string content; |
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140 FrameworkResources::GetFileResource(content, resource); |
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142 #if ORTHANC_SANDBOXED == 0 |
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143 TemporaryFile tmp; |
2017 | 144 tmp.Write(content); |
1656 | 145 |
146 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
147 { | |
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148 throw OrthancException(ErrorCode_InternalError, |
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149 "Cannot read embedded dictionary. Under Windows, make sure that " |
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150 "your TEMP directory does not contain special characters."); |
1656 | 151 } |
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152 #else |
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153 if (!dictionary.loadFromMemory(content)) |
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154 { |
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155 throw OrthancException(ErrorCode_InternalError, |
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156 "Cannot read embedded dictionary. Under Windows, make sure that " |
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157 "your TEMP directory does not contain special characters."); |
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158 } |
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159 #endif |
1656 | 160 } |
161 #endif | |
162 | |
163 | |
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164 namespace |
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165 { |
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166 class DictionaryLocker : public boost::noncopyable |
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167 { |
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168 private: |
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169 DcmDataDictionary& dictionary_; |
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170 |
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171 public: |
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172 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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173 { |
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174 } |
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175 |
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176 ~DictionaryLocker() |
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177 { |
3117 | 178 #if DCMTK_VERSION_NUMBER >= 364 |
179 dcmDataDict.wrunlock(); | |
180 #else | |
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181 dcmDataDict.unlock(); |
3117 | 182 #endif |
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183 } |
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184 |
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185 DcmDataDictionary& operator*() |
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186 { |
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187 return dictionary_; |
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188 } |
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189 |
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190 DcmDataDictionary* operator->() |
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191 { |
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192 return &dictionary_; |
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193 } |
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194 }; |
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195 |
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196 |
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197 ORTHANC_FORCE_INLINE |
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198 static std::string FloatToString(float v) |
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199 { |
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200 /** |
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201 * From "boost::lexical_cast" documentation: "For more involved |
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202 * conversions, such as where precision or formatting need tighter |
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203 * control than is offered by the default behavior of |
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204 * lexical_cast, the conventional stringstream approach is |
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205 * recommended." |
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206 * https://www.boost.org/doc/libs/1_65_0/doc/html/boost_lexical_cast.html |
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207 * http://www.gotw.ca/publications/mill19.htm |
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208 * |
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209 * The precision of 17 corresponds to "defaultRealPrecision" in JsonCpp: |
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210 * https://github.com/open-source-parsers/jsoncpp/blob/master/include/json/value.h |
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211 **/ |
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212 |
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213 //return boost::lexical_cast<std::string>(v); // This was used in Orthanc <= 1.9.0 |
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214 |
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215 std::ostringstream ss; |
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216 ss << std::setprecision(17) << v; |
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217 return ss.str(); |
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218 } |
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219 |
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220 |
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221 ORTHANC_FORCE_INLINE |
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222 static std::string DoubleToString(double v) |
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223 { |
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224 //return boost::lexical_cast<std::string>(v); // This was used in Orthanc <= 1.9.0 |
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225 |
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226 std::ostringstream ss; |
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227 ss << std::setprecision(17) << v; |
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228 return ss.str(); |
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229 } |
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230 |
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231 |
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232 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter, toStringFunction) \ |
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233 \ |
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234 struct converter \ |
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235 { \ |
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236 typedef cType CType; \ |
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237 \ |
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238 ORTHANC_FORCE_INLINE \ |
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239 static bool Apply(CType& result, \ |
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240 DcmElement& element, \ |
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241 size_t i) \ |
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242 { \ |
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243 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \ |
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244 } \ |
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245 \ |
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246 ORTHANC_FORCE_INLINE \ |
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247 static std::string ToString(CType value) \ |
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248 { \ |
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249 return toStringFunction(value); \ |
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250 } \ |
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251 }; |
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252 |
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253 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32, boost::lexical_cast<std::string>) |
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254 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16, boost::lexical_cast<std::string>) |
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255 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32, boost::lexical_cast<std::string>) |
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256 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16, boost::lexical_cast<std::string>) |
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257 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32, FloatToString) |
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258 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64, DoubleToString) |
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259 |
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260 |
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261 template <typename F> |
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262 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element) |
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263 { |
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264 F f; |
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265 typename F::CType value; |
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266 |
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267 if (element.getLength() > sizeof(typename F::CType) |
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268 && (element.getLength() % sizeof(typename F::CType)) == 0) |
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269 { |
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270 size_t count = element.getLength() / sizeof(typename F::CType); |
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271 std::vector<std::string> strings; |
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272 for (size_t i = 0; i < count; i++) { |
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273 if (f.Apply(value, element, i)) { |
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274 strings.push_back(F::ToString(value)); |
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275 } |
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276 } |
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277 return new DicomValue(boost::algorithm::join(strings, "\\"), false); |
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278 } |
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279 else if (f.Apply(value, element, 0)) { |
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280 return new DicomValue(F::ToString(value), false); |
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281 } |
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282 else { |
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283 return new DicomValue; |
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284 } |
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285 } |
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286 } |
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287 |
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288 |
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289 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
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291 CLOG(INFO, DICOM) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER; |
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293 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
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294 { |
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295 DictionaryLocker locker; |
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296 |
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297 locker->clear(); |
1656 | 298 |
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299 CLOG(INFO, DICOM) << "Loading the embedded dictionaries"; |
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300 /** |
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301 * Do not load DICONDE dictionary, it breaks the other tags. The |
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302 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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303 * dictionary is not loaded by storescu. |
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304 **/ |
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305 //LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICONDE); |
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306 |
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307 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICOM); |
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308 |
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309 if (loadPrivateDictionary) |
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310 { |
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311 CLOG(INFO, DICOM) << "Loading the embedded dictionary of private tags"; |
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312 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_PRIVATE); |
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313 } |
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314 else |
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315 { |
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316 CLOG(INFO, DICOM) << "The dictionary of private tags has not been loaded"; |
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317 } |
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318 } |
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319 #else |
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320 { |
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321 std::vector<std::string> dictionaries; |
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322 |
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323 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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324 if (env != NULL) |
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325 { |
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326 // This mimics the behavior of DCMTK: |
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327 // https://support.dcmtk.org/docs/file_envvars.html |
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328 #if defined(_WIN32) |
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329 Toolbox::TokenizeString(dictionaries, std::string(env), ';'); |
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330 #else |
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331 Toolbox::TokenizeString(dictionaries, std::string(env), ':'); |
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332 #endif |
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333 } |
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334 else |
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335 { |
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336 boost::filesystem::path base = DCMTK_DICTIONARY_DIR; |
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337 dictionaries.push_back((base / "dicom.dic").string()); |
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338 |
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339 if (loadPrivateDictionary) |
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340 { |
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341 dictionaries.push_back((base / "private.dic").string()); |
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342 } |
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343 } |
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344 |
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345 LoadExternalDictionaries(dictionaries); |
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346 hasExternalDictionaries_ = false; // Fix the side-effect of "LoadExternalDictionaries()" |
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347 } |
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349 | |
350 /* make sure data dictionary is loaded */ | |
351 if (!dcmDataDict.isDictionaryLoaded()) | |
352 { | |
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353 throw OrthancException(ErrorCode_InternalError, |
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354 "No DICOM dictionary loaded, check environment variable: " + |
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355 std::string(DCM_DICT_ENVIRONMENT_VARIABLE)); |
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357 | |
358 { | |
359 // Test the dictionary with a simple DICOM tag | |
360 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
361 if (key.getEVR() != EVR_DS) | |
362 { | |
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363 throw OrthancException(ErrorCode_InternalError, |
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364 "The DICOM dictionary has not been correctly read"); |
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366 } | |
367 } | |
368 | |
369 | |
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370 void FromDcmtkBridge::LoadExternalDictionaries(const std::vector<std::string>& dictionaries) |
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371 { |
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372 DictionaryLocker locker; |
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373 |
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374 CLOG(INFO, DICOM) << "Clearing the DICOM dictionary"; |
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375 locker->clear(); |
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376 |
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377 for (size_t i = 0; i < dictionaries.size(); i++) |
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378 { |
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379 LOG(WARNING) << "Loading external DICOM dictionary: \"" << dictionaries[i] << "\""; |
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380 |
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381 if (!locker->loadDictionary(dictionaries[i].c_str())) |
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382 { |
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383 throw OrthancException(ErrorCode_InexistentFile); |
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384 } |
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385 } |
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386 |
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387 hasExternalDictionaries_ = true; |
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388 } |
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389 |
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390 |
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391 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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392 ValueRepresentation vr, |
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393 const std::string& name, |
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394 unsigned int minMultiplicity, |
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395 unsigned int maxMultiplicity, |
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396 const std::string& privateCreator) |
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397 { |
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398 if (minMultiplicity < 1) |
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399 { |
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400 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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401 } |
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402 |
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403 bool arbitrary = false; |
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404 if (maxMultiplicity == 0) |
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405 { |
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406 maxMultiplicity = DcmVariableVM; |
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407 arbitrary = true; |
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408 } |
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409 else if (maxMultiplicity < minMultiplicity) |
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410 { |
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411 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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412 } |
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413 |
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414 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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415 |
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416 CLOG(INFO, DICOM) << "Registering tag in dictionary: (" << tag.Format() << ") " |
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417 << (DcmVR(evr).getValidVRName()) << " " |
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418 << name << " (multiplicity: " << minMultiplicity << "-" |
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419 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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420 |
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421 std::unique_ptr<DcmDictEntry> entry; |
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422 if (privateCreator.empty()) |
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423 { |
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424 if (tag.GetGroup() % 2 == 1) |
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425 { |
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426 char buf[128]; |
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427 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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428 "but no private creator was associated with it", |
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429 tag.GetGroup(), tag.GetElement()); |
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430 LOG(WARNING) << buf; |
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431 } |
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432 |
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433 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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434 tag.GetElement(), |
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435 evr, name.c_str(), |
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436 static_cast<int>(minMultiplicity), |
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437 static_cast<int>(maxMultiplicity), |
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438 NULL /* version */, |
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439 OFTrue /* doCopyString */, |
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440 NULL /* private creator */)); |
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441 } |
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442 else |
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443 { |
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444 // "Private Data Elements have an odd Group Number that is not |
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445 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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446 // (FFFF,eeee)." |
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447 if (tag.GetGroup() % 2 == 0 /* even */ || |
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448 tag.GetGroup() == 0x0001 || |
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449 tag.GetGroup() == 0x0003 || |
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450 tag.GetGroup() == 0x0005 || |
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451 tag.GetGroup() == 0x0007 || |
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452 tag.GetGroup() == 0xffff) |
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453 { |
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454 char buf[128]; |
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455 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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456 tag.GetGroup(), tag.GetElement()); |
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457 throw OrthancException(ErrorCode_ParameterOutOfRange, std::string(buf)); |
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458 } |
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459 |
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460 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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461 tag.GetElement(), |
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462 evr, name.c_str(), |
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463 static_cast<int>(minMultiplicity), |
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464 static_cast<int>(maxMultiplicity), |
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465 "private" /* version */, |
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466 OFTrue /* doCopyString */, |
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467 privateCreator.c_str())); |
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468 } |
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469 |
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470 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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471 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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472 |
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473 { |
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474 DictionaryLocker locker; |
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475 |
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476 if (locker->findEntry(DcmTagKey(tag.GetGroup(), tag.GetElement()), |
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477 privateCreator.empty() ? NULL : privateCreator.c_str())) |
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478 { |
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479 throw OrthancException(ErrorCode_AlreadyExistingTag, |
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480 "Cannot register twice the tag (" + tag.Format() + |
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481 "), whose symbolic name is \"" + name + "\""); |
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482 } |
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fix error if overriding existing tag in the DICOM dictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
483 else |
651f069c7f77
fix error if overriding existing tag in the DICOM dictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
484 { |
651f069c7f77
fix error if overriding existing tag in the DICOM dictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
485 locker->addEntry(entry.release()); |
651f069c7f77
fix error if overriding existing tag in the DICOM dictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4690
diff
changeset
|
486 } |
1657
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
487 } |
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
488 } |
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
489 |
5360cdba70d8
New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1656
diff
changeset
|
490 |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
491 Encoding FromDcmtkBridge::DetectEncoding(bool& hasCodeExtensions, |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
492 DcmItem& dataset, |
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1927
diff
changeset
|
493 Encoding defaultEncoding) |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
949
diff
changeset
|
494 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
495 // http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2 |
957
63973b76a51f
detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
496 |
63973b76a51f
detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
497 OFString tmp; |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
498 if (dataset.findAndGetOFStringArray(DCM_SpecificCharacterSet, tmp).good()) |
957
63973b76a51f
detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
499 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
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parents:
3209
diff
changeset
|
500 std::vector<std::string> tokens; |
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preliminary support of Korean character set
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parents:
3209
diff
changeset
|
501 Toolbox::TokenizeString(tokens, std::string(tmp.c_str()), '\\'); |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
502 |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
503 hasCodeExtensions = (tokens.size() > 1); |
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preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
504 |
cf8cbeb35f33
preliminary support of Korean character set
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parents:
3209
diff
changeset
|
505 for (size_t i = 0; i < tokens.size(); i++) |
957
63973b76a51f
detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
506 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
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parents:
3209
diff
changeset
|
507 std::string characterSet = Toolbox::StripSpaces(tokens[i]); |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
508 |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
509 if (!characterSet.empty()) |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
510 { |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
511 Encoding encoding; |
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preliminary support of Korean character set
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parents:
3209
diff
changeset
|
512 |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
513 if (GetDicomEncoding(encoding, characterSet.c_str())) |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
514 { |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
515 // The specific character set is supported by the Orthanc core |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
516 return encoding; |
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preliminary support of Korean character set
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parents:
3209
diff
changeset
|
517 } |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
518 else |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
519 { |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
520 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
521 << ", fallback to ASCII (remove all special characters)"; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
522 return Encoding_Ascii; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
523 } |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
524 } |
957
63973b76a51f
detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
525 } |
63973b76a51f
detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
956
diff
changeset
|
526 } |
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1087
diff
changeset
|
527 else |
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1087
diff
changeset
|
528 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
529 hasCodeExtensions = false; |
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1087
diff
changeset
|
530 } |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
531 |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
532 // No specific character set tag: Use the default encoding |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
533 return defaultEncoding; |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
949
diff
changeset
|
534 } |
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
949
diff
changeset
|
535 |
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
949
diff
changeset
|
536 |
4297 | 537 Encoding FromDcmtkBridge::DetectEncoding(DcmItem &dataset, |
538 Encoding defaultEncoding) | |
539 { | |
540 bool hasCodeExtensions; // ignored | |
541 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); | |
542 } | |
543 | |
544 | |
545 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, | |
2125 | 546 DcmItem& dataset, |
547 unsigned int maxStringLength, | |
3577
33cfcc74d1b1
argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3448
diff
changeset
|
548 const std::set<DicomTag>& ignoreTagLength) |
0 | 549 { |
4137
6774605d4341
keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4136
diff
changeset
|
550 const Encoding defaultEncoding = GetDefaultDicomEncoding(); |
6774605d4341
keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4136
diff
changeset
|
551 |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
552 bool hasCodeExtensions; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
553 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
949
diff
changeset
|
554 |
0 | 555 target.Clear(); |
556 for (unsigned long i = 0; i < dataset.card(); i++) | |
557 { | |
558 DcmElement* element = dataset.getElement(i); | |
559 if (element && element->isLeaf()) | |
560 { | |
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
561 target.SetValueInternal(element->getTag().getGTag(), |
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
562 element->getTag().getETag(), |
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
563 ConvertLeafElement(*element, DicomToJsonFlags_Default, |
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
564 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength)); |
0 | 565 } |
566 } | |
567 } | |
568 | |
569 | |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
957
diff
changeset
|
570 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
957
diff
changeset
|
571 { |
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
957
diff
changeset
|
572 return DicomTag(tag.getGTag(), tag.getETag()); |
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
957
diff
changeset
|
573 } |
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
957
diff
changeset
|
574 |
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
957
diff
changeset
|
575 |
0 | 576 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
577 { | |
578 return DicomTag(element.getGTag(), element.getETag()); | |
579 } | |
580 | |
581 | |
4527
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
582 static DicomValue* CreateValueFromUtf8String(const DicomTag& tag, |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
583 const std::string& utf8, |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
584 unsigned int maxStringLength, |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
585 const std::set<DicomTag>& ignoreTagLength) |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
586 { |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
587 if (maxStringLength != 0 && |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
588 utf8.size() > maxStringLength && |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
589 ignoreTagLength.find(tag) == ignoreTagLength.end()) |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
590 { |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
591 return new DicomValue; // Too long, create a NULL value |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
592 } |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
593 else |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
594 { |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
595 return new DicomValue(utf8, false); |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
596 } |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
597 } |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
598 |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
599 |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
949
diff
changeset
|
600 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
601 DicomToJsonFlags flags, |
1929
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
602 unsigned int maxStringLength, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
603 Encoding encoding, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
604 bool hasCodeExtensions, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
605 const std::set<DicomTag>& ignoreTagLength) |
0 | 606 { |
607 if (!element.isLeaf()) | |
608 { | |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
609 // This function is only applicable to leaf elements |
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1557
diff
changeset
|
610 throw OrthancException(ErrorCode_BadParameterType); |
0 | 611 } |
612 | |
613 { | |
4527
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
614 char *c = NULL; |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
615 if (element.isaString() && |
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
616 element.getString(c).good()) |
0 | 617 { |
4527
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
618 if (c == NULL) // This case corresponds to the empty string |
1854
e2c3d752ee1a
prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1831
diff
changeset
|
619 { |
4527
31f940334496
Handle public tags with "UN" value representation and containing a string (cf. DICOM CP 246)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4516
diff
changeset
|
620 return new DicomValue("", false); |
1854
e2c3d752ee1a
prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1831
diff
changeset
|
621 } |
e2c3d752ee1a
prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1831
diff
changeset
|
622 else |
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prevent too long tags to be inserted
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623 { |
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624 const std::string s(c); |
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625 const std::string utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
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626 return CreateValueFromUtf8String(GetTag(element), utf8, maxStringLength, ignoreTagLength); |
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627 } |
0 | 628 } |
629 } | |
630 | |
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631 |
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632 if (element.getVR() == EVR_UN) |
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633 { |
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634 /** |
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635 * Unknown value representation: Lookup in the dictionary. This |
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636 * is notably the case for private tags registered with the |
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637 * "Dictionary" configuration option, or for public tags with |
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638 * "EVR_UN" in the case of Little Endian Implicit transfer |
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639 * syntax (cf. DICOM CP 246). |
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640 * ftp://medical.nema.org/medical/dicom/final/cp246_ft.pdf |
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641 **/ |
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642 DictionaryLocker locker; |
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643 |
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644 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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645 element.getTag().getPrivateCreator()); |
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646 if (entry != NULL && |
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647 entry->getVR().isaString()) |
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648 { |
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649 Uint8* data = NULL; |
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650 |
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651 if (element.getUint8Array(data) == EC_Normal) |
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652 { |
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653 Uint32 length = element.getLength(); |
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654 |
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655 if (data == NULL || |
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656 length == 0) |
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657 { |
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658 return new DicomValue("", false); // Empty string |
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659 } |
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660 |
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661 // Remove the trailing padding, if any |
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662 if (length > 0 && |
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663 length % 2 == 0 && |
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664 data[length - 1] == '\0') |
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665 { |
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666 length = length - 1; |
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667 } |
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668 |
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669 if (element.getTag().isPrivate()) |
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670 { |
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671 // For private tags, we do not try and convert to UTF-8, |
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672 // as nothing ensures that the encoding of the private tag |
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673 // is the same as that of the remaining of the DICOM |
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674 // dataset. Only go for ASCII strings. |
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675 if (Toolbox::IsAsciiString(data, length)) |
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676 { |
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677 const std::string s(reinterpret_cast<const char*>(data), length); |
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678 return CreateValueFromUtf8String(GetTag(element), s, maxStringLength, ignoreTagLength); |
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679 } |
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680 else |
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681 { |
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682 // Not a plain ASCII string: Consider it as a binary |
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683 // value that is handled in the switch-case below |
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684 } |
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685 } |
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686 else |
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687 { |
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688 // For public tags, convert to UTF-8 by using the |
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689 // "SpecificCharacterSet" tag, if present. This branch is |
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690 // new in Orthanc 1.9.1 (cf. DICOM CP 246). |
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691 const std::string s(reinterpret_cast<const char*>(data), length); |
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692 const std::string utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
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693 return CreateValueFromUtf8String(GetTag(element), utf8, maxStringLength, ignoreTagLength); |
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694 } |
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695 } |
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696 } |
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697 } |
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698 |
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699 |
0 | 700 try |
701 { | |
702 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
703 switch (element.getVR()) | |
704 { | |
705 | |
706 /** | |
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707 * Deal with binary data (including PixelData). |
0 | 708 **/ |
306
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709 |
302
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710 case EVR_OB: // other byte |
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711 case EVR_OF: // other float |
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712 case EVR_OW: // other word |
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713 case EVR_UN: // unknown value representation |
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714 case EVR_ox: // OB or OW depending on context |
306
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715 case EVR_DS: // decimal string |
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716 case EVR_IS: // integer string |
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717 case EVR_AS: // age string |
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718 case EVR_DA: // date string |
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719 case EVR_DT: // date time string |
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720 case EVR_TM: // time string |
302
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721 case EVR_AE: // application entity title |
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722 case EVR_CS: // code string |
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723 case EVR_SH: // short string |
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724 case EVR_LO: // long string |
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725 case EVR_ST: // short text |
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726 case EVR_LT: // long text |
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727 case EVR_UT: // unlimited text |
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728 case EVR_PN: // person name |
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729 case EVR_UI: // unique identifier |
1818
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730 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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731 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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732 { |
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733 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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734 { |
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735 Uint8* data = NULL; |
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736 if (element.getUint8Array(data) == EC_Normal) |
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737 { |
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738 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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739 } |
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740 } |
0 | 741 |
1818
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742 return new DicomValue; |
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743 } |
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744 |
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745 /** |
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746 * Numeric types |
1818
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747 **/ |
0 | 748 |
302
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749 case EVR_SL: // signed long |
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750 { |
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751 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element); |
302
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752 } |
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753 |
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754 case EVR_SS: // signed short |
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755 { |
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756 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element); |
302
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757 } |
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758 |
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759 case EVR_UL: // unsigned long |
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760 { |
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761 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element); |
302
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762 } |
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763 |
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764 case EVR_US: // unsigned short |
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765 { |
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766 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element); |
302
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767 } |
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768 |
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769 case EVR_FL: // float single-precision |
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770 { |
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771 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element); |
302
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772 } |
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773 |
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774 case EVR_FD: // float double-precision |
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775 { |
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776 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element); |
1131 | 777 } |
778 | |
779 | |
780 /** | |
781 * Attribute tag. | |
782 **/ | |
783 | |
784 case EVR_AT: | |
785 { | |
1147 | 786 DcmTagKey tag; |
787 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
788 { | |
789 DicomTag t(tag.getGroup(), tag.getElement()); | |
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790 return new DicomValue(t.Format(), false); |
1147 | 791 } |
1131 | 792 else |
1147 | 793 { |
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794 return new DicomValue; |
1147 | 795 } |
302
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796 } |
0 | 797 |
798 | |
799 /** | |
302
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800 * Sequence types, should never occur at this point because of |
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801 * "element.isLeaf()". |
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802 **/ |
0 | 803 |
302
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804 case EVR_SQ: // sequence of items |
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805 return new DicomValue; |
0 | 806 |
807 | |
302
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808 /** |
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809 * Internal to DCMTK. |
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810 **/ |
0 | 811 |
302
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812 case EVR_xs: // SS or US depending on context |
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813 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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814 case EVR_na: // na="not applicable", for data which has no VR |
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815 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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816 case EVR_item: // used internally for items |
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817 case EVR_metainfo: // used internally for meta info datasets |
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818 case EVR_dataset: // used internally for datasets |
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819 case EVR_fileFormat: // used internally for DICOM files |
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820 case EVR_dicomDir: // used internally for DICOMDIR objects |
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821 case EVR_dirRecord: // used internally for DICOMDIR records |
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822 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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823 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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824 case EVR_PixelData: // used internally for uncompressed pixeld data |
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825 case EVR_OverlayData: // used internally for overlay data |
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826 return new DicomValue; |
0 | 827 |
828 | |
302
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829 /** |
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830 * Default case. |
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831 **/ |
0 | 832 |
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833 default: |
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834 return new DicomValue; |
0 | 835 } |
836 } | |
2499
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837 catch (boost::bad_lexical_cast&) |
0 | 838 { |
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839 return new DicomValue; |
0 | 840 } |
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841 catch (std::bad_cast&) |
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842 { |
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843 return new DicomValue; |
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844 } |
0 | 845 } |
846 | |
847 | |
1687 | 848 static Json::Value& PrepareNode(Json::Value& parent, |
849 DcmElement& element, | |
850 DicomToJsonFormat format) | |
0 | 851 { |
1687 | 852 assert(parent.type() == Json::objectValue); |
0 | 853 |
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854 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
305
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855 const std::string formattedTag = tag.Format(); |
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856 |
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857 if (format == DicomToJsonFormat_Short) |
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858 { |
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859 parent[formattedTag] = Json::nullValue; |
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860 return parent[formattedTag]; |
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861 } |
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862 |
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863 // This code gives access to the name of the private tags |
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864 std::string tagName = FromDcmtkBridge::GetTagName(element); |
1688
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865 |
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|
866 switch (format) |
0 | 867 { |
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868 case DicomToJsonFormat_Human: |
1688
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869 parent[tagName] = Json::nullValue; |
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870 return parent[tagName]; |
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871 |
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872 case DicomToJsonFormat_Full: |
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873 { |
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874 parent[formattedTag] = Json::objectValue; |
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875 Json::Value& node = parent[formattedTag]; |
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876 |
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877 if (element.isLeaf()) |
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878 { |
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879 node["Name"] = tagName; |
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880 |
2076 | 881 if (element.getTag().getPrivateCreator() != NULL) |
1688
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882 { |
2076 | 883 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
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884 } |
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885 |
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886 return node; |
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887 } |
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diff
changeset
|
888 else |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
889 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
890 node["Name"] = tagName; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
891 node["Type"] = "Sequence"; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
892 node["Value"] = Json::nullValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
893 return node["Value"]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
894 } |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
895 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
896 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
897 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
898 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 899 } |
900 } | |
901 | |
902 | |
903 static void LeafValueToJson(Json::Value& target, | |
904 const DicomValue& value, | |
905 DicomToJsonFormat format, | |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
906 DicomToJsonFlags flags, |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
907 unsigned int maxStringLength) |
1687 | 908 { |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
909 Json::Value* targetValue = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
910 Json::Value* targetType = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
911 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
912 switch (format) |
1687 | 913 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
914 case DicomToJsonFormat_Short: |
1860
c7d70f659190
DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1854
diff
changeset
|
915 case DicomToJsonFormat_Human: |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
916 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
917 assert(target.type() == Json::nullValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
918 targetValue = ⌖ |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
919 break; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
920 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
921 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
922 case DicomToJsonFormat_Full: |
0 | 923 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
924 assert(target.type() == Json::objectValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
925 target["Value"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
926 target["Type"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
927 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
928 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
929 break; |
0 | 930 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
931 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
932 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
933 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 934 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
935 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
936 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
937 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
938 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
939 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
940 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
941 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
942 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
943 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
944 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
945 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
946 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
947 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
948 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
949 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
950 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
951 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
952 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
953 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
954 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
955 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
956 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
957 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
958 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
959 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
960 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
961 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
962 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
963 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
964 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
965 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
966 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
967 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
968 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
969 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
970 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
971 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
972 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
973 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
974 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
975 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
976 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
977 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
978 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
979 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
980 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
981 } |
1687 | 982 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
983 |
1687 | 984 |
2126 | 985 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
986 DcmElement& element, | |
987 DicomToJsonFormat format, | |
988 DicomToJsonFlags flags, | |
989 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
990 Encoding encoding, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
991 bool hasCodeExtensions, |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4501
diff
changeset
|
992 const std::set<DicomTag>& ignoreTagLength, |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4501
diff
changeset
|
993 unsigned int depth) |
1687 | 994 { |
1691 | 995 if (parent.type() == Json::nullValue) |
996 { | |
997 parent = Json::objectValue; | |
998 } | |
999 | |
1000 assert(parent.type() == Json::objectValue); | |
1687 | 1001 Json::Value& target = PrepareNode(parent, element, format); |
1002 | |
1003 if (element.isLeaf()) | |
1004 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1005 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1006 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1007 (element, flags, 0, encoding, hasCodeExtensions, ignoreTagLength)); |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1008 |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1009 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1010 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1011 LeafValueToJson(target, *v, format, flags, maxStringLength); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1012 } |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1013 else |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1014 { |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1015 LeafValueToJson(target, *v, format, flags, 0); |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1016 } |
0 | 1017 } |
1018 else | |
1019 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
1020 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
1021 target = Json::arrayValue; |
0 | 1022 |
1023 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
1024 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 1025 // etc. are not." The following dynamic_cast is thus OK. |
0 | 1026 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
1027 | |
1028 for (unsigned long i = 0; i < sequence.card(); i++) | |
1029 { | |
1030 DcmItem* child = sequence.getItem(i); | |
1687 | 1031 Json::Value& v = target.append(Json::objectValue); |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4501
diff
changeset
|
1032 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, hasCodeExtensions, |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4501
diff
changeset
|
1033 ignoreTagLength, depth + 1); |
1687 | 1034 } |
0 | 1035 } |
1036 } | |
1037 | |
1038 | |
2126 | 1039 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
1040 DcmItem& item, | |
1041 DicomToJsonFormat format, | |
1042 DicomToJsonFlags flags, | |
1043 unsigned int maxStringLength, | |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1044 Encoding encoding, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
1045 bool hasCodeExtensions, |
4514
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1046 const std::set<DicomTag>& ignoreTagLength, |
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|
1047 unsigned int depth) |
1686 | 1048 { |
1688
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1049 assert(parent.type() == Json::objectValue); |
1686 | 1050 |
1051 for (unsigned long i = 0; i < item.card(); i++) | |
1052 { | |
1053 DcmElement* element = item.getElement(i); | |
1735
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1054 if (element == NULL) |
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1055 { |
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1056 throw OrthancException(ErrorCode_InternalError); |
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1057 } |
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1058 |
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1059 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
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1060 |
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1061 // New flag in Orthanc 1.9.1 |
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1062 if (depth == 0 && |
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1063 (flags & DicomToJsonFlags_StopAfterPixelData) && |
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1064 tag > DICOM_TAG_PIXEL_DATA) |
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1065 { |
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1066 continue; |
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1067 } |
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1068 |
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1069 // New flag in Orthanc 1.9.1 |
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1070 if ((flags & DicomToJsonFlags_SkipGroupLengths) && |
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1071 tag.GetElement() == 0x0000) |
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1072 { |
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1073 continue; |
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1074 } |
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1075 |
1818
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1076 /*element->getTag().isPrivate()*/ |
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1077 if (tag.IsPrivate() && |
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1078 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
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1079 { |
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1080 continue; |
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1081 } |
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1082 |
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1083 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
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1084 { |
1736
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1085 DictionaryLocker locker; |
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1086 if (locker->findEntry(element->getTag(), element->getTag().getPrivateCreator()) == NULL) |
1736
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1087 { |
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1088 continue; |
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1089 } |
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1090 } |
1736
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1091 |
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1092 if (IsBinaryTag(element->getTag())) |
1739
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1093 { |
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1094 // This is a binary tag |
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1095 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
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1096 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
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1097 { |
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1098 continue; |
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1099 } |
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1100 } |
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1101 |
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1102 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding, |
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1103 hasCodeExtensions, ignoreTagLength, depth); |
1686 | 1104 } |
1105 } | |
1106 | |
1107 | |
2126 | 1108 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
1109 DcmDataset& dataset, | |
1110 DicomToJsonFormat format, | |
1111 DicomToJsonFlags flags, | |
2131 | 1112 unsigned int maxStringLength, |
2409
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1113 const std::set<DicomTag>& ignoreTagLength) |
0 | 1114 { |
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1115 const Encoding defaultEncoding = GetDefaultDicomEncoding(); |
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1116 |
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1117 bool hasCodeExtensions; |
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1118 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
2126 | 1119 |
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1120 target = Json::objectValue; |
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1121 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength, 0); |
0 | 1122 } |
1123 | |
1124 | |
2126 | 1125 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
1126 DcmMetaInfo& dataset, | |
1127 DicomToJsonFormat format, | |
1128 DicomToJsonFlags flags, | |
1129 unsigned int maxStringLength) | |
1831
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1130 { |
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1131 std::set<DicomTag> ignoreTagLength; |
1831
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1132 target = Json::objectValue; |
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1133 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, false, ignoreTagLength, 0); |
1831
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1134 } |
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1135 |
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1136 |
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1137 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 1138 { |
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1139 if (!hasExternalDictionaries_) |
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1140 { |
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1141 /** |
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1142 * Some patches for important tags because of different DICOM |
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1143 * dictionaries between DCMTK versions. Since Orthanc 1.9.4, we |
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1144 * don't apply these patches if external dictionaries are |
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1145 * loaded, notably for compatibility with DICONDE. In Orthanc <= |
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1146 * 1.9.3, this was done by method "DicomTag::GetMainTagsName()". |
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1147 **/ |
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1148 |
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1149 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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1150 |
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1151 if (tmp == DICOM_TAG_ACCESSION_NUMBER) |
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1152 return "AccessionNumber"; |
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1153 |
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1154 if (tmp == DICOM_TAG_SOP_INSTANCE_UID) |
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1155 return "SOPInstanceUID"; |
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1156 |
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1157 if (tmp == DICOM_TAG_PATIENT_ID) |
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1158 return "PatientID"; |
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1159 |
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1160 if (tmp == DICOM_TAG_SERIES_INSTANCE_UID) |
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1161 return "SeriesInstanceUID"; |
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1162 |
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1163 if (tmp == DICOM_TAG_STUDY_INSTANCE_UID) |
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1164 return "StudyInstanceUID"; |
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1165 |
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1166 if (tmp == DICOM_TAG_PIXEL_DATA) |
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1167 return "PixelData"; |
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1168 |
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1169 if (tmp == DICOM_TAG_IMAGE_INDEX) |
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1170 return "ImageIndex"; |
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1171 |
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1172 if (tmp == DICOM_TAG_INSTANCE_NUMBER) |
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1173 return "InstanceNumber"; |
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1174 |
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1175 if (tmp == DICOM_TAG_NUMBER_OF_SLICES) |
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1176 return "NumberOfSlices"; |
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1177 |
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1178 if (tmp == DICOM_TAG_NUMBER_OF_FRAMES) |
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1179 return "NumberOfFrames"; |
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1180 |
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1181 if (tmp == DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES) |
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1182 return "CardiacNumberOfImages"; |
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1183 |
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1184 if (tmp == DICOM_TAG_IMAGES_IN_ACQUISITION) |
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1185 return "ImagesInAcquisition"; |
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1186 |
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1187 if (tmp == DICOM_TAG_PATIENT_NAME) |
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1188 return "PatientName"; |
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1189 |
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1190 if (tmp == DICOM_TAG_IMAGE_POSITION_PATIENT) |
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1191 return "ImagePositionPatient"; |
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1192 |
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1193 if (tmp == DICOM_TAG_IMAGE_ORIENTATION_PATIENT) |
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1194 return "ImageOrientationPatient"; |
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1195 |
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1196 // New in Orthanc 1.6.0, as tagged as "RETIRED_" since DCMTK 3.6.4 |
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1197 if (tmp == DICOM_TAG_OTHER_PATIENT_IDS) |
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1198 return "OtherPatientIDs"; |
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1199 |
2115
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1200 // End of patches |
291
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1201 } |
106 | 1202 |
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1203 #if 0 |
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1204 // This version explicitly calls the dictionary |
0 | 1205 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1206 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
1207 | |
306
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1208 std::string s(DcmTag_ERROR_TagName); |
0 | 1209 if (entry != NULL) |
1210 { | |
1211 s = std::string(entry->getTagName()); | |
1212 } | |
1213 | |
1214 dcmDataDict.unlock(); | |
1215 return s; | |
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1216 #else |
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1217 const char* name = tag.getTagName(); |
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1218 if (name == NULL) |
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1219 { |
306
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1220 return DcmTag_ERROR_TagName; |
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1221 } |
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1222 else |
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1223 { |
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1224 return std::string(name); |
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1225 } |
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|
1226 #endif |
0 | 1227 } |
1228 | |
1229 | |
2115
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|
1230 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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1231 const std::string& privateCreator) |
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1232 { |
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1233 DcmTag tag(t.GetGroup(), t.GetElement()); |
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1234 |
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1235 if (!privateCreator.empty()) |
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1236 { |
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1237 tag.setPrivateCreator(privateCreator.c_str()); |
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1238 } |
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1239 |
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1240 return GetTagNameInternal(tag); |
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1241 } |
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|
1242 |
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1243 |
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|
1244 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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1245 { |
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1246 // Copy the tag to ensure const-correctness of DcmElement. Note |
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1247 // that the private creator information is also copied. |
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|
1248 DcmTag tag(element.getTag()); |
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1249 |
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1250 return GetTagNameInternal(tag); |
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1251 } |
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|
1252 |
4297 | 1253 std::string FromDcmtkBridge::GetTagName(const DicomElement &element) |
1254 { | |
1255 return GetTagName(element.GetTag(), ""); | |
1256 } | |
1257 | |
2115
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1258 |
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|
1259 |
304 | 1260 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 1261 { |
2662
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|
1262 DicomTag parsed(0, 0); |
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1263 if (DicomTag::ParseHexadecimal(parsed, name)) |
304 | 1264 { |
2662
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|
1265 return parsed; |
1861
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diff
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|
1266 } |
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1267 |
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1268 #if 0 |
0 | 1269 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1270 const DcmDictEntry* entry = dict.findEntry(name); | |
1271 | |
1272 if (entry == NULL) | |
1273 { | |
1274 dcmDataDict.unlock(); | |
1582
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1275 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1276 } |
1277 else | |
1278 { | |
1279 DcmTagKey key = entry->getKey(); | |
1280 DicomTag tag(key.getGroup(), key.getElement()); | |
1281 dcmDataDict.unlock(); | |
1282 return tag; | |
1283 } | |
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1284 #else |
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1285 DcmTag tag; |
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1286 if (DcmTag::findTagFromName(name, tag).good()) |
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1287 { |
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1288 return DicomTag(tag.getGTag(), tag.getETag()); |
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1289 } |
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1290 else |
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|
1291 { |
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|
1292 CLOG(INFO, DICOM) << "Unknown DICOM tag: \"" << name << "\""; |
1582
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1293 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1294 } |
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1295 #endif |
0 | 1296 } |
1297 | |
4297 | 1298 DicomTag FromDcmtkBridge::ParseTag(const std::string &name) |
1299 { | |
1300 return ParseTag(name.c_str()); | |
1301 } | |
1302 | |
1303 bool FromDcmtkBridge::HasTag(const DicomMap &fields, const std::string &tagName) | |
1304 { | |
1305 return fields.HasTag(ParseTag(tagName)); | |
1306 } | |
1307 | |
1308 const DicomValue &FromDcmtkBridge::GetValue(const DicomMap &fields, | |
1309 const std::string &tagName) | |
1310 { | |
1311 return fields.GetValue(ParseTag(tagName)); | |
1312 } | |
1313 | |
1314 void FromDcmtkBridge::SetValue(DicomMap &target, | |
1315 const std::string &tagName, | |
1316 DicomValue *value) | |
1317 { | |
1318 const DicomTag tag = ParseTag(tagName); | |
1319 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value); | |
1320 } | |
1321 | |
0 | 1322 |
1655
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1323 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1324 { |
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1325 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1326 return tmp.isUnknownVR(); |
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1327 } |
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1328 |
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1329 |
0 | 1330 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1331 const DicomMap& values, |
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changeset
|
1332 DicomToJsonFormat format) |
0 | 1333 { |
1334 if (result.type() != Json::objectValue) | |
1335 { | |
62 | 1336 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1337 } |
1338 | |
1339 result.clear(); | |
1340 | |
3651
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1341 for (DicomMap::Content::const_iterator |
46cb00e4adbb
DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1342 it = values.content_.begin(); it != values.content_.end(); ++it) |
0 | 1343 { |
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1344 switch (format) |
1368 | 1345 { |
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1346 case DicomToJsonFormat_Human: |
1368 | 1347 { |
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1348 // TODO Inject PrivateCreator if some is available in the DicomMap? |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1349 const std::string tagName = GetTagName(it->first, ""); |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1350 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1351 if (it->second->IsNull()) |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1352 { |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1353 result[tagName] = Json::nullValue; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1354 } |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1355 else |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1356 { |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1357 // TODO IsBinary |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1358 result[tagName] = it->second->GetContent(); |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1359 } |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1360 break; |
1368 | 1361 } |
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1362 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1363 case DicomToJsonFormat_Full: |
1368 | 1364 { |
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1365 // TODO Inject PrivateCreator if some is available in the DicomMap? |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1366 const std::string tagName = GetTagName(it->first, ""); |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1367 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1368 Json::Value value = Json::objectValue; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1369 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1370 value["Name"] = tagName; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1371 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1372 if (it->second->IsNull()) |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1373 { |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1374 value["Type"] = "Null"; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1375 value["Value"] = Json::nullValue; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1376 } |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1377 else |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1378 { |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1379 // TODO IsBinary |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1380 value["Type"] = "String"; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1381 value["Value"] = it->second->GetContent(); |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1382 } |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1383 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1384 result[it->first.Format()] = value; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1385 break; |
1368 | 1386 } |
1387 | |
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1388 case DicomToJsonFormat_Short: |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1389 { |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1390 const std::string hex = it->first.Format(); |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1391 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1392 if (it->second->IsNull()) |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1393 { |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1394 result[hex] = Json::nullValue; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1395 } |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1396 else |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1397 { |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1398 // TODO IsBinary |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1399 result[hex] = it->second->GetContent(); |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1400 } |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1401 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1402 break; |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1403 } |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1404 |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1405 default: |
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4696
diff
changeset
|
1406 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1368 | 1407 } |
0 | 1408 } |
1409 } | |
176 | 1410 |
1411 | |
788 | 1412 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1413 { |
1414 char uid[100]; | |
1415 | |
1416 switch (level) | |
1417 { | |
788 | 1418 case ResourceType_Patient: |
311 | 1419 // The "PatientID" field is of type LO (Long String), 64 |
1420 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1421 // as a random PatientID. | |
2512
4dcafa8d6633
SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2499
diff
changeset
|
1422 return Toolbox::GenerateUuid(); |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
1423 |
788 | 1424 case ResourceType_Instance: |
302
238134081136
modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
1425 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1426 |
788 | 1427 case ResourceType_Series: |
302
238134081136
modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
1428 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1429 |
788 | 1430 case ResourceType_Study: |
302
238134081136
modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
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291
diff
changeset
|
1431 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1432 |
302
238134081136
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Sebastien Jodogne <s.jodogne@gmail.com>
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291
diff
changeset
|
1433 default: |
238134081136
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
291
diff
changeset
|
1434 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1435 } |
1436 } | |
1437 | |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1438 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1439 |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1440 static bool SaveToMemoryBufferInternal(std::string& buffer, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1441 DcmFileFormat& dicom, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1442 E_TransferSyntax xfer) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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3743
diff
changeset
|
1443 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1444 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1445 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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parents:
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diff
changeset
|
1446 // Create a memory buffer with the proper size |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1447 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1448 const uint32_t estimatedSize = dicom.calcElementLength(xfer, encodingType); // (*) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1449 buffer.resize(estimatedSize); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1450 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1451 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1452 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1453 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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diff
changeset
|
1454 // Fill the memory buffer with the meta-header and the dataset |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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parents:
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diff
changeset
|
1455 dicom.transferInit(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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parents:
3743
diff
changeset
|
1456 OFCondition c = dicom.write(ob, xfer, encodingType, NULL, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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parents:
3743
diff
changeset
|
1457 /*opt_groupLength*/ EGL_recalcGL, |
3765
4a25727401cd
first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3748
diff
changeset
|
1458 /*opt_paddingType*/ EPD_noChange, |
4a25727401cd
first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1459 /*padlen*/ 0, /*subPadlen*/ 0, /*instanceLength*/ 0, |
4a25727401cd
first transcoding to jpeg 8bpp
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diff
changeset
|
1460 EWM_updateMeta /* creates new SOP instance UID on lossy */); |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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diff
changeset
|
1461 dicom.transferEnd(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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diff
changeset
|
1462 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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parents:
3743
diff
changeset
|
1463 if (c.good()) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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parents:
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diff
changeset
|
1464 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1465 // The DICOM file is successfully written, truncate the target |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1466 // buffer if its size was overestimated by (*) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1467 ob.flush(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1468 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1469 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1470 if (effectiveSize < buffer.size()) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1471 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1472 buffer.resize(effectiveSize); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1473 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1474 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1475 return true; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1476 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1477 else |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1478 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1479 // Error |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1480 buffer.clear(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1481 return false; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1482 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1483 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1484 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1485 |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1486 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1487 DcmDataset& dataSet) |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1488 { |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1489 // Determine the transfer syntax which shall be used to write the |
3811
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1490 // information to the file. If not possible, switch to the Little |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1491 // Endian syntax, with explicit length. |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
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285
diff
changeset
|
1492 |
4d7469f72a0b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1493 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
661
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1494 |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1495 |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1496 /** |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1497 * Note that up to Orthanc 0.7.1 (inclusive), the |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1498 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1499 * dataset into memory. We now keep the original transfer syntax |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1500 * (if available). |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1501 **/ |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1502 E_TransferSyntax xfer = dataSet.getCurrentXfer(); |
661
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1503 if (xfer == EXS_Unknown) |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1504 { |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1505 // No information about the original transfer syntax: This is |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1506 // most probably a DICOM dataset that was read from memory. |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1507 xfer = EXS_LittleEndianExplicit; |
d233b5090105
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1508 } |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1509 |
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1510 // Create the meta-header information |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
1511 DcmFileFormat ff(&dataSet); |
661
d233b5090105
accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
656
diff
changeset
|
1512 ff.validateMetaInfo(xfer); |
1316
1c8dfedefefe
Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1307
diff
changeset
|
1513 ff.removeInvalidGroups(); |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1514 |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1515 return SaveToMemoryBufferInternal(buffer, ff, xfer); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1516 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1517 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1518 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1519 bool FromDcmtkBridge::Transcode(DcmFileFormat& dicom, |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1520 DicomTransferSyntax syntax, |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1521 const DcmRepresentationParameter* representation) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1522 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1523 E_TransferSyntax xfer; |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1524 if (!LookupDcmtkTransferSyntax(xfer, syntax)) |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1525 { |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1526 throw OrthancException(ErrorCode_InternalError); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1527 } |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
1528 else |
3885
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1529 { |
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1530 DicomTransferSyntax sourceSyntax; |
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1531 bool known = LookupOrthancTransferSyntax(sourceSyntax, dicom); |
3922
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
1532 |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
1533 if (!dicom.chooseRepresentation(xfer, representation).good() || |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
1534 !dicom.canWriteXfer(xfer) || |
3811
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1535 !dicom.validateMetaInfo(xfer, EWM_updateMeta).good()) |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1536 { |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1537 return false; |
890af7156f19
fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3772
diff
changeset
|
1538 } |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1539 else |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1540 { |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1541 dicom.removeInvalidGroups(); |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1542 |
3885
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1543 if (known) |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1544 { |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1545 CLOG(INFO, DICOM) << "Transcoded an image from transfer syntax " |
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1546 << GetTransferSyntaxUid(sourceSyntax) << " to " |
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1547 << GetTransferSyntaxUid(syntax); |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1548 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1549 else |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1550 { |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1551 CLOG(INFO, DICOM) << "Transcoded an image from unknown transfer syntax to " |
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1552 << GetTransferSyntaxUid(syntax); |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1553 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1554 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1555 return true; |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1556 } |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1557 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1558 } |
1360 | 1559 |
1560 | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1561 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1562 { |
1563 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1564 return Convert(t.getEVR()); |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1565 } |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1566 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1567 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1568 { |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1569 switch (vr) |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1570 { |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1571 case EVR_AE: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1572 return ValueRepresentation_ApplicationEntity; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1573 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1574 case EVR_AS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1575 return ValueRepresentation_AgeString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1576 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1577 case EVR_AT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1578 return ValueRepresentation_AttributeTag; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1579 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1580 case EVR_CS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1581 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1582 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1583 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1584 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1585 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1586 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1587 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1588 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1589 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1590 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1591 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1592 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1593 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1594 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1595 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1596 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1597 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1598 case EVR_IS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1599 return ValueRepresentation_IntegerString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1600 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1601 case EVR_LO: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1602 return ValueRepresentation_LongString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1603 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1604 case EVR_LT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1605 return ValueRepresentation_LongText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1606 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1607 case EVR_OB: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1608 return ValueRepresentation_OtherByte; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1609 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1610 #if DCMTK_VERSION_NUMBER >= 361 |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1611 case EVR_OD: |
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1612 return ValueRepresentation_OtherDouble; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1613 #endif |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1614 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1615 case EVR_OF: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1616 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1617 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1618 #if DCMTK_VERSION_NUMBER >= 362 |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1619 case EVR_OL: |
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
1620 return ValueRepresentation_OtherLong; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1621 #endif |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1622 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1623 case EVR_OW: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1624 return ValueRepresentation_OtherWord; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1625 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1626 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1627 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1628 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1629 case EVR_SH: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1630 return ValueRepresentation_ShortString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1631 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1632 case EVR_SL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1633 return ValueRepresentation_SignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1634 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1635 case EVR_SQ: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1636 return ValueRepresentation_Sequence; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1637 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1638 case EVR_SS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1639 return ValueRepresentation_SignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1640 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1641 case EVR_ST: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1642 return ValueRepresentation_ShortText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1643 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1644 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1645 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1646 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1647 #if DCMTK_VERSION_NUMBER >= 361 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1648 case EVR_UC: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1649 return ValueRepresentation_UnlimitedCharacters; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1650 #endif |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1651 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1652 case EVR_UI: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1653 return ValueRepresentation_UniqueIdentifier; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1654 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1655 case EVR_UL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1656 return ValueRepresentation_UnsignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1657 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1658 case EVR_UN: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1659 return ValueRepresentation_Unknown; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1660 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1661 #if DCMTK_VERSION_NUMBER >= 361 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1662 case EVR_UR: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1663 return ValueRepresentation_UniversalResource; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1664 #endif |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1665 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1666 case EVR_US: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1667 return ValueRepresentation_UnsignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1668 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1669 case EVR_UT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1670 return ValueRepresentation_UnlimitedText; |
1792 | 1671 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1672 default: |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1673 return ValueRepresentation_NotSupported; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1674 } |
1360 | 1675 } |
1676 | |
1689 | 1677 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1678 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1679 const std::string& privateCreator) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1680 { |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1681 if (tag.IsPrivate() && |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1682 privateCreator.empty()) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1683 { |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1684 // This solves issue 140 (Modifying private tags with REST API |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1685 // changes VR from LO to UN) |
4476
c1f36fd13730
migrate remaining links to issues in bitbucket to mercurial server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1686 // https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1687 LOG(WARNING) << "Private creator should not be empty while creating a private tag: " << tag.Format(); |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1688 } |
1689 | 1689 |
3692
fd302ec6a502
fix for ubuntu 16.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3691
diff
changeset
|
1690 #if DCMTK_VERSION_NUMBER >= 362 |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1691 DcmTag key(tag.GetGroup(), tag.GetElement()); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1692 if (tag.IsPrivate()) |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1693 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1694 return DcmItem::newDicomElement(key, privateCreator.c_str()); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1695 } |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1696 else |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1697 { |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1698 return DcmItem::newDicomElement(key, NULL); |
1689 | 1699 } |
3691
4922bdd046dd
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1700 |
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1701 #else |
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1702 DcmTag key(tag.GetGroup(), tag.GetElement()); |
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1703 if (tag.IsPrivate()) |
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1704 { |
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1705 // https://forum.dcmtk.org/viewtopic.php?t=4527 |
3708 | 1706 LOG(WARNING) << "You are using DCMTK <= 3.6.1: All the private tags " |
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1707 "are considered as having a binary value representation"; |
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1708 key.setPrivateCreator(privateCreator.c_str()); |
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1709 return new DcmOtherByteOtherWord(key); |
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1710 } |
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1711 else |
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1712 { |
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1713 return newDicomElement(key); |
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1714 } |
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1715 #endif |
1689 | 1716 } |
1717 | |
1718 | |
1719 | |
1720 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1695 | 1721 const std::string& utf8Value, |
1818
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1722 bool decodeDataUriScheme, |
1695 | 1723 Encoding dicomEncoding) |
1689 | 1724 { |
1725 std::string binary; | |
1695 | 1726 const std::string* decoded = &utf8Value; |
1689 | 1727 |
1818
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1728 if (decodeDataUriScheme && |
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1729 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
1689 | 1730 { |
1731 std::string mime; | |
1981
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1732 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
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1733 { |
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1734 throw OrthancException(ErrorCode_BadFileFormat); |
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1735 } |
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1736 |
1695 | 1737 decoded = &binary; |
1738 } | |
1739 else if (dicomEncoding != Encoding_Utf8) | |
1740 { | |
1741 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1742 decoded = &binary; |
1743 } | |
1744 | |
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1745 if (IsBinaryTag(element.getTag())) |
1689 | 1746 { |
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1747 bool ok; |
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1748 |
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1749 switch (element.getTag().getEVR()) |
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1750 { |
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1751 case EVR_OW: |
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1752 if (decoded->size() % sizeof(Uint16) != 0) |
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1753 { |
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1754 LOG(ERROR) << "A tag with OW VR must have an even number of bytes"; |
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1755 ok = false; |
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1756 } |
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1757 else |
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1758 { |
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1759 ok = element.putUint16Array((const Uint16*) decoded->c_str(), decoded->size() / sizeof(Uint16)).good(); |
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1760 } |
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1761 |
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1762 break; |
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1763 |
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1764 default: |
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1765 ok = element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good(); |
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1766 break; |
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1767 } |
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1768 |
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1769 if (ok) |
1689 | 1770 { |
1771 return; | |
1772 } | |
1773 else | |
1774 { | |
1775 throw OrthancException(ErrorCode_InternalError); | |
1776 } | |
1777 } | |
1778 | |
1779 bool ok = false; | |
1780 | |
1781 try | |
1782 { | |
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1783 switch (element.getTag().getEVR()) |
1689 | 1784 { |
1785 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1786 | |
1787 /** | |
1788 * TODO. | |
1789 **/ | |
1790 | |
1791 case EVR_OB: // other byte | |
1792 case EVR_OW: // other word | |
1793 throw OrthancException(ErrorCode_NotImplemented); | |
1794 | |
1795 case EVR_UN: // unknown value representation | |
1796 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1797 | |
1798 | |
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1799 /** |
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1800 * String types. |
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1801 **/ |
1689 | 1802 |
1803 case EVR_DS: // decimal string | |
1804 case EVR_IS: // integer string | |
1805 case EVR_AS: // age string | |
1806 case EVR_DA: // date string | |
1807 case EVR_DT: // date time string | |
1808 case EVR_TM: // time string | |
1809 case EVR_AE: // application entity title | |
1810 case EVR_CS: // code string | |
1811 case EVR_SH: // short string | |
1812 case EVR_LO: // long string | |
1813 case EVR_ST: // short text | |
1814 case EVR_LT: // long text | |
1815 case EVR_UT: // unlimited text | |
1816 case EVR_PN: // person name | |
1817 case EVR_UI: // unique identifier | |
3209
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1818 #if DCMTK_VERSION_NUMBER >= 361 |
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1819 case EVR_UC: // unlimited characters |
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1820 case EVR_UR: // URI/URL |
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1821 #endif |
1689 | 1822 { |
1823 ok = element.putString(decoded->c_str()).good(); | |
1824 break; | |
1825 } | |
1826 | |
1827 | |
1828 /** | |
1829 * Numerical types | |
1830 **/ | |
1831 | |
1832 case EVR_SL: // signed long | |
1833 { | |
1834 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1835 break; | |
1836 } | |
1837 | |
1838 case EVR_SS: // signed short | |
1839 { | |
1840 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1841 break; | |
1842 } | |
1843 | |
1844 case EVR_UL: // unsigned long | |
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1845 #if DCMTK_VERSION_NUMBER >= 362 |
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1846 case EVR_OL: // other long (requires byte-swapping) |
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1847 #endif |
1689 | 1848 { |
1849 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1850 break; | |
1851 } | |
1852 | |
1853 case EVR_US: // unsigned short | |
1854 { | |
1855 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1856 break; | |
1857 } | |
1858 | |
1859 case EVR_FL: // float single-precision | |
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1860 case EVR_OF: // other float (requires byte swapping) |
1689 | 1861 { |
1862 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1863 break; | |
1864 } | |
1865 | |
1866 case EVR_FD: // float double-precision | |
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1867 #if DCMTK_VERSION_NUMBER >= 361 |
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1868 case EVR_OD: // other double (requires byte-swapping) |
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1869 #endif |
1689 | 1870 { |
1871 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1872 break; | |
1873 } | |
1874 | |
1875 | |
1876 /** | |
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1877 * Other types |
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1878 **/ |
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1879 |
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1880 case EVR_AT: // attribute tag, new in Orthanc 1.9.4 |
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1881 { |
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1882 DicomTag value = ParseTag(utf8Value); |
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1883 ok = element.putTagVal(DcmTagKey(value.GetGroup(), value.GetElement())).good(); |
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1884 break; |
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1885 } |
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1886 |
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1887 |
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1888 /** |
1689 | 1889 * Sequence types, should never occur at this point. |
1890 **/ | |
1891 | |
1892 case EVR_SQ: // sequence of items | |
1893 { | |
1894 ok = false; | |
1895 break; | |
1896 } | |
1897 | |
1898 | |
1899 /** | |
1900 * Internal to DCMTK. | |
1901 **/ | |
1902 | |
1903 case EVR_ox: // OB or OW depending on context | |
1904 case EVR_xs: // SS or US depending on context | |
1905 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1906 case EVR_na: // na="not applicable", for data which has no VR | |
1907 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1908 case EVR_item: // used internally for items | |
1909 case EVR_metainfo: // used internally for meta info datasets | |
1910 case EVR_dataset: // used internally for datasets | |
1911 case EVR_fileFormat: // used internally for DICOM files | |
1912 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1913 case EVR_dirRecord: // used internally for DICOMDIR records | |
1914 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1915 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1916 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1917 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1918 case EVR_OverlayData: // used internally for overlay data | |
1919 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1920 default: | |
1921 break; | |
1922 } | |
1923 } | |
1924 catch (boost::bad_lexical_cast&) | |
1925 { | |
1926 ok = false; | |
1927 } | |
1928 | |
1929 if (!ok) | |
1930 { | |
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1931 DicomTag tag(element.getTag().getGroup(), element.getTag().getElement()); |
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1932 throw OrthancException(ErrorCode_BadFileFormat, |
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1933 "While creating a DICOM instance, tag (" + tag.Format() + |
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1934 ") has out-of-range value: \"" + (*decoded) + "\""); |
1689 | 1935 } |
1936 } | |
1937 | |
1938 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
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1939 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1940 const Json::Value& value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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1792
diff
changeset
|
1941 bool decodeDataUriScheme, |
3691
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Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
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|
1942 Encoding dicomEncoding, |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1943 const std::string& privateCreator) |
1689 | 1944 { |
3712
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replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
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3708
diff
changeset
|
1945 std::unique_ptr<DcmElement> element; |
1689 | 1946 |
1690 | 1947 switch (value.type()) |
1689 | 1948 { |
1690 | 1949 case Json::stringValue: |
3691
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
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|
1950 element.reset(CreateElementForTag(tag, privateCreator)); |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
changeset
|
1951 FillElementWithString(*element, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1952 break; |
1953 | |
2216
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2209
diff
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|
1954 case Json::nullValue: |
3691
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1955 element.reset(CreateElementForTag(tag, privateCreator)); |
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Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
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3651
diff
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|
1956 FillElementWithString(*element, "", decodeDataUriScheme, dicomEncoding); |
2216
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Sebastien Jodogne <s.jodogne@gmail.com>
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2209
diff
changeset
|
1957 break; |
9a8fab016145
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1958 |
1690 | 1959 case Json::arrayValue: |
1960 { | |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1961 const char* p = NULL; |
4016
c675d77b82ab
fix creation of sequence in private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4007
diff
changeset
|
1962 if (tag.IsPrivate() && |
c675d77b82ab
fix creation of sequence in private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4007
diff
changeset
|
1963 !privateCreator.empty()) |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1964 { |
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1965 p = privateCreator.c_str(); |
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1966 } |
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1967 |
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1968 DcmTag key(tag.GetGroup(), tag.GetElement(), p); |
1690 | 1969 if (key.getEVR() != EVR_SQ) |
1970 { | |
4007
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1971 throw OrthancException(ErrorCode_BadParameterType, |
884b55ce01f6
Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3922
diff
changeset
|
1972 "Bad Parameter type for tag " + tag.Format()); |
1690 | 1973 } |
1974 | |
2287
9f3414878c02
Fix Debian #865606 (orthanc FTBFS with libdcmtk-dev 3.6.1~20170228-2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2275
diff
changeset
|
1975 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key); |
1690 | 1976 element.reset(sequence); |
1977 | |
1978 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1979 { | |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1980 std::unique_ptr<DcmItem> item(new DcmItem); |
1690 | 1981 |
2830 | 1982 switch (value[i].type()) |
1690 | 1983 { |
2830 | 1984 case Json::objectValue: |
1985 { | |
1986 Json::Value::Members members = value[i].getMemberNames(); | |
1987 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1988 { | |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1989 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding, privateCreator)); |
2830 | 1990 } |
2831 | 1991 break; |
2830 | 1992 } |
1993 | |
1994 case Json::arrayValue: | |
2831 | 1995 { |
2830 | 1996 // Lua cannot disambiguate between an empty dictionary |
1997 // and an empty array | |
1998 if (value[i].size() != 0) | |
1999 { | |
2000 throw OrthancException(ErrorCode_BadParameterType); | |
2001 } | |
2002 break; | |
2831 | 2003 } |
2830 | 2004 |
2005 default: | |
2006 throw OrthancException(ErrorCode_BadParameterType); | |
1690 | 2007 } |
2008 | |
2009 sequence->append(item.release()); | |
2010 } | |
2011 | |
2012 break; | |
2013 } | |
2014 | |
2015 default: | |
3895 | 2016 throw OrthancException(ErrorCode_BadParameterType, "Bad Parameter type for tag " + tag.Format()); |
1689 | 2017 } |
2018 | |
2019 return element.release(); | |
2020 } | |
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
2021 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
2022 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2023 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2024 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2025 DcmElement *element = NULL; |
1927
b60f27664b8f
simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
2026 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2027 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2028 throw OrthancException(ErrorCode_BadFileFormat); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2029 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2030 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2031 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
3922
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
2032 |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
2033 E_TransferSyntax repType; |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
2034 const DcmRepresentationParameter *repParam = NULL; |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
2035 pixelData.getCurrentRepresentationKey(repType, repParam); |
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
2036 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2037 DcmPixelSequence* pixelSequence = NULL; |
3922
74eeadf5d51d
fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3896
diff
changeset
|
2038 if (!pixelData.getEncapsulatedRepresentation(repType, repParam, pixelSequence).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2039 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2040 return NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2041 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2042 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2043 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2044 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2045 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
2046 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2047 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2048 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2049 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2050 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2051 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2052 if (json.type() != Json::objectValue) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2053 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2054 throw OrthancException(ErrorCode_BadParameterType); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2055 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2056 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2057 Encoding encoding = defaultEncoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2058 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2059 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2060 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2061 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2062 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2063 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2064 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2065 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2066 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2067 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2068 if (value.type() != Json::stringValue || |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
2069 (value.asString().length() != 0 && |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
2070 !GetDicomEncoding(encoding, value.asCString()))) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2071 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2072 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2073 "Unknown encoding while creating DICOM from JSON: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2074 value.toStyledString()); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2075 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
2076 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
2077 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
2078 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
2079 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
2080 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2081 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2082 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2083 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2084 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2085 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2086 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2087 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2088 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2089 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2090 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2091 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2092 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2093 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2094 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2095 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2096 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2097 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2098 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2099 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2100 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2101 bool decodeDataUriScheme, |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2102 Encoding defaultEncoding, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2103 const std::string& privateCreator) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2104 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
2105 std::unique_ptr<DcmDataset> result(new DcmDataset); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2106 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2107 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2108 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2109 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2110 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2111 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2112 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2113 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2114 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2115 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2116 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2117 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2118 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2119 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2120 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2121 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2122 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2123 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2124 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2125 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2126 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2127 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2128 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2129 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2130 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2131 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2132 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2133 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2134 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2135 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2136 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2137 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2138 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2139 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2140 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
2141 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
4200 | 2142 |
2143 result->findAndDeleteElement(element->getTag()); | |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2144 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2145 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2146 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2147 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2148 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2149 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2150 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2151 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2152 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2153 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2154 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2155 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2156 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2157 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2158 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2159 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2160 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2161 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2162 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2163 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2164 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2165 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2166 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2167 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2168 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2169 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2170 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2171 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2172 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2173 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2174 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2175 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2176 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2177 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2178 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2179 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2180 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2181 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2182 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2183 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2184 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2185 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2186 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2187 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2188 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2189 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2190 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2191 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
2192 std::unique_ptr<DcmFileFormat> result(new DcmFileFormat); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2193 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2194 result->transferInit(); |
3771
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2195 |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2196 /** |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2197 * New in Orthanc 1.6.0: The "size" is given as an argument to the |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2198 * "read()" method. This can avoid huge memory consumption if |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2199 * parsing an invalid DICOM file, which can notably been observed |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2200 * by executing the integration test "test_upload_compressed" on |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2201 * valgrind running Orthanc. |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2202 **/ |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2203 if (!result->read(is, EXS_Unknown, EGL_noChange, size).good()) |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2204 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2205 throw OrthancException(ErrorCode_BadFileFormat, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2206 "Cannot parse an invalid DICOM file (size: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2207 boost::lexical_cast<std::string>(size) + " bytes)"); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2208 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2209 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2210 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2211 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2212 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2213 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2214 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2215 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2216 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2217 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2218 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2219 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2220 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2221 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2222 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2223 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2224 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2225 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2226 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2227 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2228 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2229 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2230 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2231 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2232 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2233 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2234 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2235 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2236 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2237 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
2238 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2239 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2240 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2241 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2242 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2243 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2244 Encoding source, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2245 bool hasSourceCodeExtensions, |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2246 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2247 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2248 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2249 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2250 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2251 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2252 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2253 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2254 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2255 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2256 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2257 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2258 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2259 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2260 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2261 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2262 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2263 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2264 if (element->isaString() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2265 element->getString(c).good() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2266 c != NULL) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2267 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2268 std::string a = Toolbox::ConvertToUtf8(c, source, hasSourceCodeExtensions); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2269 std::string b = Toolbox::ConvertFromUtf8(a, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2270 element->putString(b.c_str()); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2271 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2272 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2273 else |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2274 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2275 // "All subclasses of DcmElement except for DcmSequenceOfItems |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2276 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2277 // etc. are not." The following dynamic_cast is thus OK. |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2278 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2279 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2280 for (unsigned long j = 0; j < sequence.card(); j++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2281 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2282 ChangeStringEncoding(*sequence.getItem(j), source, hasSourceCodeExtensions, target); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2283 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2284 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2285 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2286 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2287 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2288 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2289 |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2290 void FromDcmtkBridge::InitializeCodecs() |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2291 { |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2292 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
2293 CLOG(INFO, DICOM) << "Registering JPEG Lossless codecs in DCMTK"; |
3727
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2294 DJLSDecoderRegistration::registerCodecs(); |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2295 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2296 DJLSEncoderRegistration::registerCodecs(); |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2297 # endif |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2298 #endif |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2299 |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2300 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
2301 CLOG(INFO, DICOM) << "Registering JPEG codecs in DCMTK"; |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2302 DJDecoderRegistration::registerCodecs(); |
3727
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2303 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2304 DJEncoderRegistration::registerCodecs(); |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2305 # endif |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2306 #endif |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
2307 |
4696
dd6274412ff4
new configuration option "ExternalDictionaries" to load external DICOM dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4695
diff
changeset
|
2308 CLOG(INFO, DICOM) << "Registering RLE codecs in DCMTK"; |
3748
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
2309 DcmRLEDecoderRegistration::registerCodecs(); |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3743
diff
changeset
|
2310 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
ca36e3f1112c
transcoding to uncompressed transfer syntaxes
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2311 DcmRLEEncoderRegistration::registerCodecs(); |
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2312 #endif |
2381
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2313 } |
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2314 |
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2315 |
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|
2316 void FromDcmtkBridge::FinalizeCodecs() |
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2317 { |
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2318 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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2319 // Unregister JPEG-LS codecs |
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2320 DJLSDecoderRegistration::cleanup(); |
3727
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2321 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2322 DJLSEncoderRegistration::cleanup(); |
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2323 # endif |
2381
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2324 #endif |
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|
2325 |
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|
2326 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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2327 // Unregister JPEG codecs |
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|
2328 DJDecoderRegistration::cleanup(); |
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2329 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2330 DJEncoderRegistration::cleanup(); |
3727
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2331 # endif |
2381
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|
2332 #endif |
3748
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2333 |
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2334 DcmRLEDecoderRegistration::cleanup(); |
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2335 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2336 DcmRLEEncoderRegistration::cleanup(); |
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2337 #endif |
2381
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2338 } |
2499
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2339 |
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|
2340 |
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|
2341 |
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2342 // Forward declaration |
4734
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2343 static bool ApplyVisitorToElement(DcmElement& element, |
2499
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2344 ITagVisitor& visitor, |
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2345 const std::vector<DicomTag>& parentTags, |
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2346 const std::vector<size_t>& parentIndexes, |
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|
2347 Encoding encoding, |
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|
2348 bool hasCodeExtensions); |
2499
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2349 |
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|
2350 static void ApplyVisitorToDataset(DcmItem& dataset, |
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2351 ITagVisitor& visitor, |
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|
2352 const std::vector<DicomTag>& parentTags, |
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|
2353 const std::vector<size_t>& parentIndexes, |
3217
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2354 Encoding encoding, |
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|
2355 bool hasCodeExtensions) |
2499
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2356 { |
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|
2357 assert(parentTags.size() == parentIndexes.size()); |
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|
2358 |
4734
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|
2359 std::set<DcmTagKey> toRemove; |
b51c08bd5c38
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|
2360 |
2499
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|
2361 for (unsigned long i = 0; i < dataset.card(); i++) |
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|
2362 { |
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|
2363 DcmElement* element = dataset.getElement(i); |
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|
2364 if (element == NULL) |
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|
2365 { |
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|
2366 throw OrthancException(ErrorCode_InternalError); |
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|
2367 } |
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2368 else |
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|
2369 { |
4734
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diff
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|
2370 if (!ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions)) |
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diff
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|
2371 { |
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added ITagVisitor::Action_Remove
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diff
changeset
|
2372 toRemove.insert(element->getTag()); |
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added ITagVisitor::Action_Remove
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diff
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|
2373 } |
2499
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|
2374 } |
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|
2375 } |
4734
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diff
changeset
|
2376 |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2377 // Remove all the tags that were planned for removal (cf. ITagVisitor::Action_Remove) |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2378 for (std::set<DcmTagKey>::const_iterator |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2379 it = toRemove.begin(); it != toRemove.end(); ++it) |
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added ITagVisitor::Action_Remove
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diff
changeset
|
2380 { |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2381 std::unique_ptr<DcmElement> tmp(dataset.remove(*it)); |
b51c08bd5c38
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|
2382 } |
2499
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|
2383 } |
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|
2384 |
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changeset
|
2385 |
4734
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added ITagVisitor::Action_Remove
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diff
changeset
|
2386 // Returns "true" iff the element must be kept. If "false" is |
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added ITagVisitor::Action_Remove
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diff
changeset
|
2387 // returned, the element will be removed. |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2388 static bool ApplyVisitorToLeaf(DcmElement& element, |
2499
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|
2389 ITagVisitor& visitor, |
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|
2390 const std::vector<DicomTag>& parentTags, |
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|
2391 const std::vector<size_t>& parentIndexes, |
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|
2392 const DicomTag& tag, |
3217
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|
2393 Encoding encoding, |
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|
2394 bool hasCodeExtensions) |
2499
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|
2395 { |
3198
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|
2396 // TODO - Merge this function, that is more recent, with ConvertLeafElement() |
2499
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|
2397 |
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|
2398 assert(element.isLeaf()); |
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2399 |
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2400 DcmEVR evr = element.getTag().getEVR(); |
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2401 |
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|
2402 |
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|
2403 /** |
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|
2404 * Fix the EVR for types internal to DCMTK |
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|
2405 **/ |
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|
2406 |
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2407 if (evr == EVR_ox) // OB or OW depending on context |
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2408 { |
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2409 evr = EVR_OB; |
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2410 } |
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|
2411 |
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2412 if (evr == EVR_UNKNOWN || // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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2413 evr == EVR_UNKNOWN2B) // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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|
2414 { |
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|
2415 evr = EVR_UN; |
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2416 } |
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2417 |
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2418 if (evr == EVR_UN) |
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2419 { |
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2420 // New in Orthanc 1.9.5 |
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2421 DictionaryLocker locker; |
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2422 |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2423 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2424 element.getTag().getPrivateCreator()); |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2425 |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2426 if (entry != NULL) |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2427 { |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2428 evr = entry->getEVR(); |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2429 } |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2430 } |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2431 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2432 const ValueRepresentation vr = FromDcmtkBridge::Convert(evr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2433 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2434 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2435 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2436 * Deal with binary data (including PixelData). |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2437 **/ |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2438 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2439 if (evr == EVR_OB || // other byte |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2440 evr == EVR_OW || // other word |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2441 evr == EVR_UN) // unknown value representation |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2442 { |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2443 Uint16* data16 = NULL; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2444 Uint8* data = NULL; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2445 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2446 ITagVisitor::Action action; |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2447 |
4528
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2448 if ((element.getTag() == DCM_PixelData || // (*) New in Orthanc 1.9.1 |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2449 evr == EVR_OW) && |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2450 element.getUint16Array(data16) == EC_Normal) |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2451 { |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2452 action = visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data16, element.getLength()); |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2453 } |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2454 else if (evr != EVR_OW && |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2455 element.getUint8Array(data) == EC_Normal) |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2456 { |
4528
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2457 /** |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2458 * WARNING: The call to "getUint8Array()" crashes |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2459 * (segmentation fault) on big-endian architectures if applied |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2460 * to pixel data, during the call to "swapIfNecessary()" in |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2461 * "DcmPolymorphOBOW::getUint8Array()" (this method is not |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2462 * reimplemented in derived class "DcmPixelData"). However, |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2463 * "getUint16Array()" works correctly, hence (*). |
93a51d228d80
fix segmentation fault during anonymization on big-endian architectures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4527
diff
changeset
|
2464 **/ |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2465 action = visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength()); |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2466 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2467 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2468 { |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2469 action = visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2470 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2471 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2472 switch (action) |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2473 { |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2474 case ITagVisitor::Action_None: |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2475 return true; // We're done |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2476 |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2477 case ITagVisitor::Action_Remove: |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2478 return false; |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2479 |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2480 case ITagVisitor::Action_Replace: |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2481 throw OrthancException(ErrorCode_NotImplemented, "Iterator cannot replace binary data"); |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2482 |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2483 default: |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2484 throw OrthancException(ErrorCode_ParameterOutOfRange); |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2485 } |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2486 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2487 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2488 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2489 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2490 * Deal with plain strings (and convert them to UTF-8) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2491 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2492 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2493 char *c = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2494 if (element.isaString() && |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2495 element.getString(c).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2496 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2497 std::string utf8; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2498 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2499 if (c != NULL) // This case corresponds to the empty string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2500 { |
3448
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2501 if (element.getTag() == DCM_SpecificCharacterSet) |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2502 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2503 utf8.assign(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2504 } |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2505 else |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2506 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2507 std::string s(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2508 utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2509 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2510 } |
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2511 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2512 std::string newValue; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2513 ITagVisitor::Action action = visitor.VisitString |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2514 (newValue, parentTags, parentIndexes, tag, vr, utf8); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2515 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2516 switch (action) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2517 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2518 case ITagVisitor::Action_None: |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2519 return true; |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2520 |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2521 case ITagVisitor::Action_Remove: |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2522 return false; |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2523 |
83b8b6743531
ITagVisitor - for anonymization relationships
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parents:
2470
diff
changeset
|
2524 case ITagVisitor::Action_Replace: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2525 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2526 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding); |
2522
ce2dfba9417c
fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2513
diff
changeset
|
2527 if (element.putString(s.c_str()) != EC_Normal) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2528 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2529 throw OrthancException(ErrorCode_InternalError, |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2530 "Iterator cannot replace value of tag: " + tag.Format()); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2531 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2532 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2533 return true; |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2534 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2535 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2536 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2537 throw OrthancException(ErrorCode_InternalError); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2538 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2539 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2540 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2541 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2542 ITagVisitor::Action action; |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2543 |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2544 try |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2545 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2546 // http://support.dcmtk.org/docs/dcvr_8h-source.html |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2547 switch (evr) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2548 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2549 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2550 /** |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2551 * Plain string values. |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2552 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2553 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2554 case EVR_DS: // decimal string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2555 case EVR_IS: // integer string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2556 case EVR_AS: // age string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2557 case EVR_DA: // date string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2558 case EVR_DT: // date time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2559 case EVR_TM: // time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2560 case EVR_AE: // application entity title |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2561 case EVR_CS: // code string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2562 case EVR_SH: // short string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2563 case EVR_LO: // long string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2564 case EVR_ST: // short text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2565 case EVR_LT: // long text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2566 case EVR_UT: // unlimited text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2567 case EVR_PN: // person name |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2568 case EVR_UI: // unique identifier |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2569 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2570 Uint8* data = NULL; |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2571 |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2572 if (element.getUint8Array(data) == EC_Normal) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2573 { |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2574 const Uint32 length = element.getLength(); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2575 Uint32 l = 0; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2576 while (l < length && |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2577 data[l] != 0) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2578 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2579 l++; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2580 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2581 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2582 if (l == length) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2583 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2584 // Not a null-terminated plain string |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2585 action = visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2586 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2587 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2588 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2589 std::string ignored; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2590 std::string s(reinterpret_cast<const char*>(data), l); |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2591 action = visitor.VisitString(ignored, parentTags, parentIndexes, tag, vr, |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2592 Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions)); |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2593 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2594 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2595 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2596 { |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2597 action = visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2598 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2599 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2600 if (action == ITagVisitor::Action_Replace) |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2601 { |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2602 LOG(WARNING) << "Iterator cannot replace this string tag: " |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2603 << FromDcmtkBridge::GetTagName(element) |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2604 << " (" << tag.Format() << ")"; |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2605 return true; |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2606 } |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2607 |
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2608 break; |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2609 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2610 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2611 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2612 * Numeric types |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2613 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2614 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2615 case EVR_SL: // signed long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2616 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2617 DcmSignedLong& content = dynamic_cast<DcmSignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2618 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2619 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2620 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2621 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2622 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2623 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2624 Sint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2625 if (content.getSint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2626 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2627 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2628 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2629 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2630 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2631 action = visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2632 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2633 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2634 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2635 case EVR_SS: // signed short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2636 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2637 DcmSignedShort& content = dynamic_cast<DcmSignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2638 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2639 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2640 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2641 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2642 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2643 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2644 Sint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2645 if (content.getSint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2646 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2647 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2648 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2649 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2650 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2651 action = visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2652 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2653 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2654 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2655 case EVR_UL: // unsigned long |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2656 #if DCMTK_VERSION_NUMBER >= 362 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2657 case EVR_OL: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2658 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2659 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2660 DcmUnsignedLong& content = dynamic_cast<DcmUnsignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2661 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2662 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2663 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2664 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2665 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2666 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2667 Uint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2668 if (content.getUint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2669 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2670 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2671 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2672 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2673 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2674 action = visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2675 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2676 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2677 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2678 case EVR_US: // unsigned short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2679 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2680 DcmUnsignedShort& content = dynamic_cast<DcmUnsignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2681 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2682 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2683 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2684 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2685 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2686 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2687 Uint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2688 if (content.getUint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2689 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2690 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2691 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2692 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2693 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2694 action = visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2695 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2696 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2697 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2698 case EVR_FL: // float single-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2699 case EVR_OF: |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2700 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2701 DcmFloatingPointSingle& content = dynamic_cast<DcmFloatingPointSingle&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2702 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2703 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2704 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2705 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2706 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2707 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2708 Float32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2709 if (content.getFloat32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2710 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2711 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2712 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2713 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2714 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2715 action = visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2716 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2717 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2718 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2719 case EVR_FD: // float double-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2720 #if DCMTK_VERSION_NUMBER >= 361 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2721 case EVR_OD: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2722 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2723 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2724 DcmFloatingPointDouble& content = dynamic_cast<DcmFloatingPointDouble&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2725 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2726 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2727 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2728 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2729 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2730 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2731 Float64 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2732 if (content.getFloat64(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2733 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2734 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2735 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2736 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2737 |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2738 action = visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2739 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2740 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2741 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2742 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2743 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2744 * Attribute tag. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2745 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2746 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2747 case EVR_AT: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2748 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2749 DcmAttributeTag& content = dynamic_cast<DcmAttributeTag&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2750 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2751 std::vector<DicomTag> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2752 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2753 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2754 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2755 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2756 DcmTagKey f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2757 if (content.getTagVal(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2758 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2759 DicomTag t(f.getGroup(), f.getElement()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2760 values.push_back(t); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2761 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2762 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2763 |
3195 | 2764 assert(vr == ValueRepresentation_AttributeTag); |
4734
b51c08bd5c38
added ITagVisitor::Action_Remove
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
2765 action = visitor.VisitAttributes(parentTags, parentIndexes, tag, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2766 break; |
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|
2767 } |
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diff
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|
2768 |
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|
2769 |
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changeset
|
2770 /** |
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2771 * Sequence types, should never occur at this point because of |
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|
2772 * "element.isLeaf()". |
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2773 **/ |
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|
2774 |
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|
2775 case EVR_SQ: // sequence of items |
3198
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diff
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|
2776 { |
4734
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|
2777 return true; |
3198
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|
2778 } |
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|
2779 |
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|
2780 |
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|
2781 /** |
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|
2782 * Internal to DCMTK. |
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2783 **/ |
2499
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2784 |
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2785 case EVR_xs: // SS or US depending on context |
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2786 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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2787 case EVR_na: // na="not applicable", for data which has no VR |
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2788 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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2789 case EVR_item: // used internally for items |
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2790 case EVR_metainfo: // used internally for meta info datasets |
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2791 case EVR_dataset: // used internally for datasets |
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2792 case EVR_fileFormat: // used internally for DICOM files |
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2793 case EVR_dicomDir: // used internally for DICOMDIR objects |
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2794 case EVR_dirRecord: // used internally for DICOMDIR records |
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2795 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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2796 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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2797 case EVR_PixelData: // used internally for uncompressed pixeld data |
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2798 case EVR_OverlayData: // used internally for overlay data |
3198
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2799 { |
4734
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2800 action = visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
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diff
changeset
|
2801 break; |
3198
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|
2802 } |
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|
2803 |
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|
2804 |
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changeset
|
2805 /** |
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2806 * Default case. |
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|
2807 **/ |
2499
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2808 |
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changeset
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2809 default: |
4734
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added ITagVisitor::Action_Remove
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diff
changeset
|
2810 return true; |
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added ITagVisitor::Action_Remove
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diff
changeset
|
2811 } |
b51c08bd5c38
added ITagVisitor::Action_Remove
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changeset
|
2812 |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2813 switch (action) |
b51c08bd5c38
added ITagVisitor::Action_Remove
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changeset
|
2814 { |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2815 case ITagVisitor::Action_None: |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2816 return true; // We're done |
b51c08bd5c38
added ITagVisitor::Action_Remove
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changeset
|
2817 |
b51c08bd5c38
added ITagVisitor::Action_Remove
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changeset
|
2818 case ITagVisitor::Action_Remove: |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2819 return false; |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2820 |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2821 case ITagVisitor::Action_Replace: |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2822 throw OrthancException(ErrorCode_NotImplemented, "Iterator cannot replace non-string-like data"); |
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added ITagVisitor::Action_Remove
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changeset
|
2823 |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2824 default: |
b51c08bd5c38
added ITagVisitor::Action_Remove
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diff
changeset
|
2825 throw OrthancException(ErrorCode_ParameterOutOfRange); |
2499
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2826 } |
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2827 } |
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changeset
|
2828 catch (boost::bad_lexical_cast&) |
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changeset
|
2829 { |
4734
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changeset
|
2830 return true; |
2499
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|
2831 } |
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changeset
|
2832 catch (std::bad_cast&) |
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changeset
|
2833 { |
4734
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added ITagVisitor::Action_Remove
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diff
changeset
|
2834 return true; |
2499
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changeset
|
2835 } |
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changeset
|
2836 } |
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changeset
|
2837 |
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changeset
|
2838 |
4734
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added ITagVisitor::Action_Remove
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diff
changeset
|
2839 // Returns "true" iff the element must be kept. If "false" is |
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added ITagVisitor::Action_Remove
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changeset
|
2840 // returned, the element will be removed. |
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diff
changeset
|
2841 static bool ApplyVisitorToElement(DcmElement& element, |
2499
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|
2842 ITagVisitor& visitor, |
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2843 const std::vector<DicomTag>& parentTags, |
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|
2844 const std::vector<size_t>& parentIndexes, |
3217
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diff
changeset
|
2845 Encoding encoding, |
cf8cbeb35f33
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diff
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|
2846 bool hasCodeExtensions) |
2499
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2847 { |
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|
2848 assert(parentTags.size() == parentIndexes.size()); |
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2849 |
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changeset
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2850 DicomTag tag(FromDcmtkBridge::Convert(element.getTag())); |
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|
2851 |
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2852 if (element.isLeaf()) |
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2853 { |
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2854 return ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding, hasCodeExtensions); |
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2855 } |
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2856 else |
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2857 { |
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|
2858 // "All subclasses of DcmElement except for DcmSequenceOfItems |
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2859 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
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|
2860 // etc. are not." The following dynamic_cast is thus OK. |
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2861 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
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|
2862 |
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2863 ITagVisitor::Action action = visitor.VisitSequence(parentTags, parentIndexes, tag, sequence.card()); |
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2864 |
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2865 switch (action) |
3195 | 2866 { |
4737
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2867 case ITagVisitor::Action_None: |
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2868 if (sequence.card() != 0) // Minor optimization to avoid creating "tags" and "indexes" if not needed |
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2869 { |
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2870 std::vector<DicomTag> tags = parentTags; |
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2871 std::vector<size_t> indexes = parentIndexes; |
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|
2872 tags.push_back(tag); |
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|
2873 indexes.push_back(0); |
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2874 |
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changeset
|
2875 for (unsigned long i = 0; i < sequence.card(); i++) |
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2876 { |
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|
2877 indexes.back() = static_cast<size_t>(i); |
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|
2878 DcmItem* child = sequence.getItem(i); |
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DANGEROUS commit: Anonymization is now also applied to nested sequences
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parents:
4734
diff
changeset
|
2879 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding, hasCodeExtensions); |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2880 } |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2881 } |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2882 |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2883 return true; // Keep |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2884 |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2885 case ITagVisitor::Action_Remove: |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2886 return false; |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2887 |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2888 case ITagVisitor::Action_Replace: |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2889 throw OrthancException(ErrorCode_NotImplemented, "Iterator cannot replace sequences"); |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2890 |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2891 default: |
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2892 throw OrthancException(ErrorCode_ParameterOutOfRange); |
3195 | 2893 } |
4737
979ae3ea3381
DANGEROUS commit: Anonymization is now also applied to nested sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4734
diff
changeset
|
2894 |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2895 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2896 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2897 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2898 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2899 void FromDcmtkBridge::Apply(DcmItem& dataset, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2900 ITagVisitor& visitor, |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2901 Encoding defaultEncoding) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2902 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2903 std::vector<DicomTag> parentTags; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2904 std::vector<size_t> parentIndexes; |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2905 bool hasCodeExtensions; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2906 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2907 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2908 } |
3882
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2909 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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2910 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2911 |
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implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2912 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2913 DcmFileFormat& dicom) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2914 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2915 if (dicom.getDataset() == NULL) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2916 { |
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implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2917 throw OrthancException(ErrorCode_InternalError); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2918 } |
4334
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2919 else |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2920 { |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2921 return LookupOrthancTransferSyntax(target, *dicom.getDataset()); |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2922 } |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2923 } |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2924 |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2925 |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2926 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2927 DcmDataset& dataset) |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2928 { |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
2929 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
3882
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2930 if (xfer == EXS_Unknown) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2931 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2932 dataset.updateOriginalXfer(); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2933 xfer = dataset.getOriginalXfer(); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2934 if (xfer == EXS_Unknown) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2935 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2936 throw OrthancException(ErrorCode_BadFileFormat, |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2937 "Cannot determine the transfer syntax of the DICOM instance"); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2938 } |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2939 } |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2940 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2941 return FromDcmtkBridge::LookupOrthancTransferSyntax(target, xfer); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2942 } |
4501
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2943 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2944 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2945 void FromDcmtkBridge::LogMissingTagsForStore(DcmDataset& dicom) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2946 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2947 std::string patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2948 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2949 const char* c = NULL; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2950 if (dicom.findAndGetString(DCM_PatientID, c).good() && |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2951 c != NULL) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2952 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2953 patientId.assign(c); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2954 } |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2955 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2956 c = NULL; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2957 if (dicom.findAndGetString(DCM_StudyInstanceUID, c).good() && |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2958 c != NULL) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2959 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2960 studyInstanceUid.assign(c); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2961 } |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2962 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2963 c = NULL; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2964 if (dicom.findAndGetString(DCM_SeriesInstanceUID, c).good() && |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2965 c != NULL) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2966 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2967 seriesInstanceUid.assign(c); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2968 } |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2969 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2970 c = NULL; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2971 if (dicom.findAndGetString(DCM_SOPInstanceUID, c).good() && |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2972 c != NULL) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2973 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2974 sopInstanceUid.assign(c); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2975 } |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2976 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2977 DicomMap::LogMissingTagsForStore(patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2978 } |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2979 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2980 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2981 static void ApplyInternal(FromDcmtkBridge::IDicomPathVisitor& visitor, |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2982 DcmItem& item, |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2983 const DicomPath& pattern, |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2984 const DicomPath& actualPath) |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2985 { |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2986 const size_t level = actualPath.GetPrefixLength(); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2987 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2988 if (level == pattern.GetPrefixLength()) |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2989 { |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2990 visitor.Visit(item, actualPath); |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2991 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2992 else |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2993 { |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2994 assert(level < pattern.GetPrefixLength()); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2995 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
2996 const DicomTag& tmp = pattern.GetPrefixTag(level); |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2997 DcmTagKey tag(tmp.GetGroup(), tmp.GetElement()); |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2998 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
2999 DcmSequenceOfItems *sequence = NULL; |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3000 if (item.findAndGetSequence(tag, sequence).good() && |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3001 sequence != NULL) |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3002 { |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3003 for (unsigned long i = 0; i < sequence->card(); i++) |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3004 { |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3005 if (pattern.IsPrefixUniversal(level) || |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3006 pattern.GetPrefixIndex(level) == static_cast<size_t>(i)) |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3007 { |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3008 DcmItem *child = sequence->getItem(i); |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3009 if (child != NULL) |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3010 { |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3011 DicomPath childPath = actualPath; |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3012 childPath.AddIndexedTagToPrefix(pattern.GetPrefixTag(level), static_cast<size_t>(i)); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3013 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3014 ApplyInternal(visitor, *child, pattern, childPath); |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3015 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3016 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3017 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3018 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3019 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3020 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3021 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3022 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3023 void FromDcmtkBridge::Apply(IDicomPathVisitor& visitor, |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3024 DcmDataset& dataset, |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3025 const DicomPath& path) |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3026 { |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3027 DicomPath actualPath(path.GetFinalTag()); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3028 ApplyInternal(visitor, dataset, path, actualPath); |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3029 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3030 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3031 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3032 void FromDcmtkBridge::RemovePath(DcmDataset& dataset, |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3033 const DicomPath& path) |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3034 { |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3035 class Visitor : public FromDcmtkBridge::IDicomPathVisitor |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3036 { |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3037 public: |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3038 virtual void Visit(DcmItem& item, |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3039 const DicomPath& path) ORTHANC_OVERRIDE |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3040 { |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3041 DcmTagKey key(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement()); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3042 std::unique_ptr<DcmElement> removed(item.remove(key)); |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3043 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3044 }; |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3045 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3046 Visitor visitor; |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3047 Apply(visitor, dataset, path); |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3048 } |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3049 |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3050 |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3051 void FromDcmtkBridge::ClearPath(DcmDataset& dataset, |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3052 const DicomPath& path, |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3053 bool onlyIfExists) |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3054 { |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3055 class Visitor : public FromDcmtkBridge::IDicomPathVisitor |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3056 { |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3057 public: |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3058 bool onlyIfExists_; |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3059 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3060 public: |
4690 | 3061 explicit Visitor(bool onlyIfExists) : |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3062 onlyIfExists_(onlyIfExists) |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3063 { |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3064 } |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3065 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3066 virtual void Visit(DcmItem& item, |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3067 const DicomPath& path) ORTHANC_OVERRIDE |
7182f5732480
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3068 { |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3069 DcmTagKey key(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement()); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3070 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3071 if (onlyIfExists_ && |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3072 !item.tagExists(key)) |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3073 { |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3074 // The tag is non-existing, do not clear it |
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use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3075 } |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3076 else |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3077 { |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3078 if (!item.insertEmptyElement(key, OFTrue /* replace old value */).good()) |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3079 { |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3080 throw OrthancException(ErrorCode_InternalError); |
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use of DicomPath in ParsedDicomFile
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parents:
4682
diff
changeset
|
3081 } |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3082 } |
7182f5732480
use of DicomPath in ParsedDicomFile
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parents:
4682
diff
changeset
|
3083 } |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3084 }; |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3085 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3086 Visitor visitor(onlyIfExists); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3087 Apply(visitor, dataset, path); |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3088 } |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3089 |
7182f5732480
use of DicomPath in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4682
diff
changeset
|
3090 |
4682
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3091 void FromDcmtkBridge::ReplacePath(DcmDataset& dataset, |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4663
diff
changeset
|
3092 const DicomPath& path, |
4683
7182f5732480
use of DicomPath in ParsedDicomFile
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parents:
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diff
changeset
|
3093 const DcmElement& element, |
7182f5732480
use of DicomPath in ParsedDicomFile
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|
3094 DicomReplaceMode mode) |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3095 { |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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diff
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3096 class Visitor : public FromDcmtkBridge::IDicomPathVisitor |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3097 { |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
3098 private: |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3099 std::unique_ptr<DcmElement> element_; |
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|
3100 DicomReplaceMode mode_; |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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diff
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|
3101 |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3102 public: |
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3103 Visitor(const DcmElement& element, |
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|
3104 DicomReplaceMode mode) : |
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3105 element_(dynamic_cast<DcmElement*>(element.clone())), |
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|
3106 mode_(mode) |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3107 { |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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diff
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|
3108 if (element_.get() == NULL) |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
3109 { |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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3110 throw OrthancException(ErrorCode_InternalError, "Cannot clone DcmElement"); |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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diff
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|
3111 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
3112 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
3113 |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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3114 virtual void Visit(DcmItem& item, |
4683
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3115 const DicomPath& path) ORTHANC_OVERRIDE |
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3116 { |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3117 std::unique_ptr<DcmElement> cloned(dynamic_cast<DcmElement*>(element_->clone())); |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3118 if (cloned.get() == NULL) |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
3119 { |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
3120 throw OrthancException(ErrorCode_InternalError, "Cannot clone DcmElement"); |
d38a7040474a
FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3121 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3122 else |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
3123 { |
4683
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3124 DcmTagKey key(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement()); |
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|
3125 |
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3126 if (!item.tagExists(key)) |
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|
3127 { |
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|
3128 switch (mode_) |
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|
3129 { |
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|
3130 case DicomReplaceMode_InsertIfAbsent: |
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|
3131 break; // Fine, we can proceed with insertion |
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|
3132 |
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3133 case DicomReplaceMode_ThrowIfAbsent: |
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3134 throw OrthancException(ErrorCode_InexistentItem, "Cannot replace inexistent tag: " + GetTagName(*element_)); |
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|
3135 |
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3136 case DicomReplaceMode_IgnoreIfAbsent: |
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3137 return; // Don't proceed with insertion |
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|
3138 |
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3139 default: |
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3140 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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3141 } |
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|
3142 } |
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|
3143 |
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3144 if (!item.insert(cloned.release(), OFTrue /* replace old */).good()) |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3145 { |
4683
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3146 throw OrthancException(ErrorCode_InternalError, "Cannot replace an element: " + GetTagName(*element_)); |
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3147 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3148 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3149 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3150 }; |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3151 |
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3152 DcmTagKey key(path.GetFinalTag().GetGroup(), path.GetFinalTag().GetElement()); |
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3153 |
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3154 if (element.getTag() != key) |
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3155 { |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3156 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3157 "The final tag must be the same as the tag of the element during a replacement"); |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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|
3158 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3159 else |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3160 { |
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3161 Visitor visitor(element, mode); |
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3162 Apply(visitor, dataset, path); |
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3163 } |
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FromDcmtkBridge::RemovePath() and FromDcmtkBridge::ReplacePath()
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3164 } |
0 | 3165 } |
3730
ae31ba2b09a6
toolbox: LookupTransferSyntax()
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3727
diff
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|
3166 |
ae31ba2b09a6
toolbox: LookupTransferSyntax()
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changeset
|
3167 |
ae31ba2b09a6
toolbox: LookupTransferSyntax()
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diff
changeset
|
3168 #include "./FromDcmtkBridge_TransferSyntaxes.impl.h" |