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annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.cpp @ 4515:8734caa12448

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Improved precision of floating-point numbers in DICOM-as-JSON and DICOM summary
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 16 Feb 2021 14:42:04 +0100
parents 5b929e6b3c36
children 671ee7c1fd46
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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22
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23 #include "../PrecompiledHeaders.h"
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24
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25 #ifndef NOMINMAX
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26 #define NOMINMAX
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27 #endif
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29 #if !defined(ORTHANC_SANDBOXED)
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30 # error The macro ORTHANC_SANDBOXED must be defined
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31 #endif
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32
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33 #if !defined(DCMTK_VERSION_NUMBER)
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34 # error The macro DCMTK_VERSION_NUMBER must be defined
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35 #endif
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36
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37 #include "FromDcmtkBridge.h"
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38 #include "ToDcmtkBridge.h"
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39 #include "../Compatibility.h"
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40 #include "../Logging.h"
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41 #include "../Toolbox.h"
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42 #include "../OrthancException.h"
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43
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44 #if ORTHANC_SANDBOXED == 0
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45 # include "../TemporaryFile.h"
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46 #endif
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47
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48 #include <list>
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49 #include <limits>
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50
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51 #include <boost/lexical_cast.hpp>
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52 #include <boost/filesystem.hpp>
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53 #include <boost/algorithm/string/predicate.hpp>
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54 #include <boost/algorithm/string/join.hpp>
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55
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56 #include <dcmtk/dcmdata/dcdeftag.h>
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57 #include <dcmtk/dcmdata/dcdicent.h>
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58 #include <dcmtk/dcmdata/dcdict.h>
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59 #include <dcmtk/dcmdata/dcfilefo.h>
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60 #include <dcmtk/dcmdata/dcistrmb.h>
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61 #include <dcmtk/dcmdata/dcostrmb.h>
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62 #include <dcmtk/dcmdata/dcpixel.h>
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63 #include <dcmtk/dcmdata/dcuid.h>
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64 #include <dcmtk/dcmdata/dcxfer.h>
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65
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66 #include <dcmtk/dcmdata/dcvrae.h>
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67 #include <dcmtk/dcmdata/dcvras.h>
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68 #include <dcmtk/dcmdata/dcvrat.h>
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69 #include <dcmtk/dcmdata/dcvrcs.h>
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70 #include <dcmtk/dcmdata/dcvrda.h>
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71 #include <dcmtk/dcmdata/dcvrds.h>
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72 #include <dcmtk/dcmdata/dcvrdt.h>
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73 #include <dcmtk/dcmdata/dcvrfd.h>
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74 #include <dcmtk/dcmdata/dcvrfl.h>
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75 #include <dcmtk/dcmdata/dcvris.h>
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76 #include <dcmtk/dcmdata/dcvrlo.h>
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77 #include <dcmtk/dcmdata/dcvrlt.h>
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78 #include <dcmtk/dcmdata/dcvrpn.h>
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79 #include <dcmtk/dcmdata/dcvrsh.h>
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80 #include <dcmtk/dcmdata/dcvrsl.h>
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81 #include <dcmtk/dcmdata/dcvrss.h>
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82 #include <dcmtk/dcmdata/dcvrst.h>
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83 #include <dcmtk/dcmdata/dcvrtm.h>
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84 #include <dcmtk/dcmdata/dcvrui.h>
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85 #include <dcmtk/dcmdata/dcvrul.h>
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86 #include <dcmtk/dcmdata/dcvrus.h>
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87 #include <dcmtk/dcmdata/dcvrut.h>
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88
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89 #if DCMTK_VERSION_NUMBER >= 361
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90 # include <dcmtk/dcmdata/dcvruc.h>
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91 # include <dcmtk/dcmdata/dcvrur.h>
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92 #endif
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93
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94 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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95 # include <OrthancFrameworkResources.h>
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96 #endif
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98 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
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99 # include <dcmtk/dcmjpeg/djdecode.h>
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100 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
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101 # include <dcmtk/dcmjpeg/djencode.h>
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102 # endif
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103 #endif
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105 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
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106 # include <dcmtk/dcmjpls/djdecode.h>
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107 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
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108 # include <dcmtk/dcmjpls/djencode.h>
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109 # endif
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110 #endif
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111
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112
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113 #include <dcmtk/dcmdata/dcrledrg.h>
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114 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
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115 # include <dcmtk/dcmdata/dcrleerg.h>
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116 # include <dcmtk/dcmimage/diregist.h> // include to support color images
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117 #endif
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118
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119
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120 namespace Orthanc
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121 {
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122 static bool IsBinaryTag(const DcmTag& key)
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123 {
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124 return (key.isUnknownVR() ||
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125 key.getEVR() == EVR_OB ||
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126 key.getEVR() == EVR_OW ||
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127 key.getEVR() == EVR_UN ||
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128 key.getEVR() == EVR_ox);
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129 }
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130
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131
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132 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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133 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary,
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134 FrameworkResources::FileResourceId resource)
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135 {
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136 std::string content;
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137 FrameworkResources::GetFileResource(content, resource);
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138
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139 #if ORTHANC_SANDBOXED == 0
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140 TemporaryFile tmp;
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141 tmp.Write(content);
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142
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143 if (!dictionary.loadDictionary(tmp.GetPath().c_str()))
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144 {
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145 throw OrthancException(ErrorCode_InternalError,
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146 "Cannot read embedded dictionary. Under Windows, make sure that "
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147 "your TEMP directory does not contain special characters.");
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148 }
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149 #else
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150 if (!dictionary.loadFromMemory(content))
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151 {
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152 throw OrthancException(ErrorCode_InternalError,
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153 "Cannot read embedded dictionary. Under Windows, make sure that "
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154 "your TEMP directory does not contain special characters.");
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155 }
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156 #endif
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157 }
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158 #endif
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159
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160
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161 namespace
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162 {
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163 class DictionaryLocker : public boost::noncopyable
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164 {
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165 private:
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166 DcmDataDictionary& dictionary_;
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167
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168 public:
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169 DictionaryLocker() : dictionary_(dcmDataDict.wrlock())
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170 {
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171 }
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172
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173 ~DictionaryLocker()
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174 {
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175 #if DCMTK_VERSION_NUMBER >= 364
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176 dcmDataDict.wrunlock();
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177 #else
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178 dcmDataDict.unlock();
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179 #endif
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180 }
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181
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182 DcmDataDictionary& operator*()
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183 {
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184 return dictionary_;
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185 }
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186
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187 DcmDataDictionary* operator->()
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188 {
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189 return &dictionary_;
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190 }
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191 };
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192
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193
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194 ORTHANC_FORCE_INLINE
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195 static std::string FloatToString(float v)
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196 {
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197 /**
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198 * From "boost::lexical_cast" documentation: "For more involved
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199 * conversions, such as where precision or formatting need tighter
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200 * control than is offered by the default behavior of
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201 * lexical_cast, the conventional stringstream approach is
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202 * recommended."
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203 * https://www.boost.org/doc/libs/1_65_0/doc/html/boost_lexical_cast.html
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204 * http://www.gotw.ca/publications/mill19.htm
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205 *
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206 * The precision of 17 corresponds to "defaultRealPrecision" in JsonCpp:
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207 * https://github.com/open-source-parsers/jsoncpp/blob/master/include/json/value.h
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208 **/
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209
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210 //return boost::lexical_cast<std::string>(v); // This was used in Orthanc <= 1.9.0
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211
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212 std::ostringstream ss;
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213 ss << std::setprecision(17) << v;
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214 return ss.str();
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215 }
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216
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217
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218 ORTHANC_FORCE_INLINE
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219 static std::string DoubleToString(double v)
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220 {
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221 //return boost::lexical_cast<std::string>(v); // This was used in Orthanc <= 1.9.0
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222
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223 std::ostringstream ss;
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224 ss << std::setprecision(17) << v;
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225 return ss.str();
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226 }
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227
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228
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229 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter, toStringFunction) \
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230 \
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231 struct converter \
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232 { \
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233 typedef cType CType; \
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234 \
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235 ORTHANC_FORCE_INLINE \
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236 static bool Apply(CType& result, \
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237 DcmElement& element, \
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238 size_t i) \
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239 { \
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240 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \
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241 } \
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242 \
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243 ORTHANC_FORCE_INLINE \
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244 static std::string ToString(CType value) \
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245 { \
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246 return toStringFunction(value); \
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247 } \
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248 };
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249
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250 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32, boost::lexical_cast<std::string>)
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251 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16, boost::lexical_cast<std::string>)
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252 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32, boost::lexical_cast<std::string>)
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253 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16, boost::lexical_cast<std::string>)
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254 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32, FloatToString)
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255 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64, DoubleToString)
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256
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257
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258 template <typename F>
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259 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element)
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260 {
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261 F f;
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262 typename F::CType value;
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263
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264 if (element.getLength() > sizeof(typename F::CType)
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265 && (element.getLength() % sizeof(typename F::CType)) == 0)
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266 {
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267 size_t count = element.getLength() / sizeof(typename F::CType);
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268 std::vector<std::string> strings;
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269 for (size_t i = 0; i < count; i++) {
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270 if (f.Apply(value, element, i)) {
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271 strings.push_back(F::ToString(value));
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272 }
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273 }
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274 return new DicomValue(boost::algorithm::join(strings, "\\"), false);
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275 }
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276 else if (f.Apply(value, element, 0)) {
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277 return new DicomValue(F::ToString(value), false);
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278 }
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279 else {
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280 return new DicomValue;
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281 }
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282 }
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283 }
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284
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285
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286 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary)
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287 {
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288 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER;
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289
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290 {
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291 DictionaryLocker locker;
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292
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293 locker->clear();
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294
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295 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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296 LOG(INFO) << "Loading the embedded dictionaries";
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297 /**
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298 * Do not load DICONDE dictionary, it breaks the other tags. The
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299 * command "strace storescu 2>&1 |grep dic" shows that DICONDE
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300 * dictionary is not loaded by storescu.
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301 **/
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302 //LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICONDE);
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303
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304 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICOM);
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305
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306 if (loadPrivateDictionary)
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307 {
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308 LOG(INFO) << "Loading the embedded dictionary of private tags";
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309 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_PRIVATE);
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310 }
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311 else
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312 {
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313 LOG(INFO) << "The dictionary of private tags has not been loaded";
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314 }
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315
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316 #else
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317 std::vector<std::string> dictionaries;
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318
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319 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE);
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320 if (env != NULL)
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321 {
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322 // This mimics the behavior of DCMTK:
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323 // https://support.dcmtk.org/docs/file_envvars.html
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324 #if defined(_WIN32)
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325 Toolbox::TokenizeString(dictionaries, std::string(env), ';');
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326 #else
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327 Toolbox::TokenizeString(dictionaries, std::string(env), ':');
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328 #endif
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329 }
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330 else
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331 {
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332 boost::filesystem::path base = DCMTK_DICTIONARY_DIR;
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333 dictionaries.push_back((base / "dicom.dic").string());
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334 dictionaries.push_back((base / "private.dic").string());
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335 }
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336
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337 for (size_t i = 0; i < dictionaries.size(); i++)
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338 {
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339 LOG(WARNING) << "Loading external DICOM dictionary: \"" << dictionaries[i] << "\"";
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340
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341 if (!locker->loadDictionary(dictionaries[i].c_str()))
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342 {
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343 throw OrthancException(ErrorCode_InexistentFile);
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344 }
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345 }
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346
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347 #endif
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348 }
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349
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350 /* make sure data dictionary is loaded */
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351 if (!dcmDataDict.isDictionaryLoaded())
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352 {
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353 throw OrthancException(ErrorCode_InternalError,
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354 "No DICOM dictionary loaded, check environment variable: " +
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355 std::string(DCM_DICT_ENVIRONMENT_VARIABLE));
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356 }
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357
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358 {
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359 // Test the dictionary with a simple DICOM tag
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360 DcmTag key(0x0010, 0x1030); // This is PatientWeight
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361 if (key.getEVR() != EVR_DS)
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362 {
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363 throw OrthancException(ErrorCode_InternalError,
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364 "The DICOM dictionary has not been correctly read");
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365 }
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366 }
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367 }
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368
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diff changeset
369
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370 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag,
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371 ValueRepresentation vr,
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372 const std::string& name,
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diff changeset
373 unsigned int minMultiplicity,
2115
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diff changeset
374 unsigned int maxMultiplicity,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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diff changeset
375 const std::string& privateCreator)
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
376 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
377 if (minMultiplicity < 1)
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
378 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
379 throw OrthancException(ErrorCode_ParameterOutOfRange);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
380 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
381
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
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diff changeset
382 bool arbitrary = false;
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
383 if (maxMultiplicity == 0)
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
384 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
385 maxMultiplicity = DcmVariableVM;
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
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diff changeset
386 arbitrary = true;
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
387 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
388 else if (maxMultiplicity < minMultiplicity)
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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parents: 1656
diff changeset
389 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
390 throw OrthancException(ErrorCode_ParameterOutOfRange);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
391 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
392
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
393 DcmEVR evr = ToDcmtkBridge::Convert(vr);
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
394
4313
91554aecff9a removed a friend method for better abi
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parents: 4297
diff changeset
395 LOG(INFO) << "Registering tag in dictionary: (" << tag.Format() << ") "
91554aecff9a removed a friend method for better abi
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parents: 4297
diff changeset
396 << (DcmVR(evr).getValidVRName()) << " "
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
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parents: 1739
diff changeset
397 << name << " (multiplicity: " << minMultiplicity << "-"
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
398 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")";
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
399
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
400 std::unique_ptr<DcmDictEntry> entry;
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
401 if (privateCreator.empty())
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
402 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
403 if (tag.GetGroup() % 2 == 1)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
404 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
405 char buf[128];
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
406 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), "
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
407 "but no private creator was associated with it",
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
408 tag.GetGroup(), tag.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
409 LOG(WARNING) << buf;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
410 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
411
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
412 entry.reset(new DcmDictEntry(tag.GetGroup(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
413 tag.GetElement(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
414 evr, name.c_str(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
415 static_cast<int>(minMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
416 static_cast<int>(maxMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
417 NULL /* version */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
418 OFTrue /* doCopyString */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
419 NULL /* private creator */));
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
420 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
421 else
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
422 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
423 // "Private Data Elements have an odd Group Number that is not
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
424 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
425 // (FFFF,eeee)."
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
426 if (tag.GetGroup() % 2 == 0 /* even */ ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
427 tag.GetGroup() == 0x0001 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
428 tag.GetGroup() == 0x0003 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
429 tag.GetGroup() == 0x0005 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
430 tag.GetGroup() == 0x0007 ||
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
431 tag.GetGroup() == 0xffff)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
432 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
433 char buf[128];
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
434 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009",
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
435 tag.GetGroup(), tag.GetElement());
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
436 throw OrthancException(ErrorCode_ParameterOutOfRange, std::string(buf));
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
437 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
438
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
439 entry.reset(new DcmDictEntry(tag.GetGroup(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
440 tag.GetElement(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
441 evr, name.c_str(),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
442 static_cast<int>(minMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
443 static_cast<int>(maxMultiplicity),
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
444 "private" /* version */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
445 OFTrue /* doCopyString */,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
446 privateCreator.c_str()));
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
447 }
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
448
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
449 entry->setGroupRangeRestriction(DcmDictRange_Unspecified);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
450 entry->setElementRangeRestriction(DcmDictRange_Unspecified);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
451
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
452 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
453 DictionaryLocker locker;
2116
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
454
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
455 if (locker->findEntry(name.c_str()))
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
456 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
457 throw OrthancException(ErrorCode_AlreadyExistingTag,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
458 "Cannot register two tags with the same symbolic name \"" + name + "\"");
2116
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
459 }
2fabd1073728 prevent registering two tags with the same symbolic name
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2115
diff changeset
460
1657
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
461 locker->addEntry(entry.release());
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
462 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
463 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
464
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1656
diff changeset
465
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
466 Encoding FromDcmtkBridge::DetectEncoding(bool& hasCodeExtensions,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
467 DcmItem& dataset,
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1927
diff changeset
468 Encoding defaultEncoding)
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
469 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
470 // http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
471
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
472 OFString tmp;
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
473 if (dataset.findAndGetOFStringArray(DCM_SpecificCharacterSet, tmp).good())
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
474 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
475 std::vector<std::string> tokens;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
476 Toolbox::TokenizeString(tokens, std::string(tmp.c_str()), '\\');
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
477
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
478 hasCodeExtensions = (tokens.size() > 1);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
479
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
480 for (size_t i = 0; i < tokens.size(); i++)
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
481 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
482 std::string characterSet = Toolbox::StripSpaces(tokens[i]);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
483
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
484 if (!characterSet.empty())
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
485 {
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
486 Encoding encoding;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
487
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
488 if (GetDicomEncoding(encoding, characterSet.c_str()))
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
489 {
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
490 // The specific character set is supported by the Orthanc core
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
491 return encoding;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
492 }
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
493 else
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
494 {
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
495 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
496 << ", fallback to ASCII (remove all special characters)";
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
497 return Encoding_Ascii;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
498 }
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
499 }
957
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
500 }
63973b76a51f detection of encoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
501 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
502 else
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
503 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
504 hasCodeExtensions = false;
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1087
diff changeset
505 }
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
506
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
507 // No specific character set tag: Use the default encoding
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
508 return defaultEncoding;
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
509 }
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
510
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
511
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
512 Encoding FromDcmtkBridge::DetectEncoding(DcmItem &dataset,
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
513 Encoding defaultEncoding)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
514 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
515 bool hasCodeExtensions; // ignored
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
516 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
517 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
518
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
519
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
520 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target,
2125
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
521 DcmItem& dataset,
b9bd52c72ba2 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2116
diff changeset
522 unsigned int maxStringLength,
3577
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3448
diff changeset
523 const std::set<DicomTag>& ignoreTagLength)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 {
4137
6774605d4341 keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4136
diff changeset
525 const Encoding defaultEncoding = GetDefaultDicomEncoding();
6774605d4341 keep only one signature for FromDcmtkBridge::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4136
diff changeset
526
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
527 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
528 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
529
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
530 target.Clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
531 for (unsigned long i = 0; i < dataset.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
532 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533 DcmElement* element = dataset.getElement(i);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534 if (element && element->isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
535 {
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
536 target.SetValueInternal(element->getTag().getGTag(),
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
537 element->getTag().getETag(),
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
538 ConvertLeafElement(*element, DicomToJsonFlags_Default,
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
539 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength));
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
540 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
541 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
542 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
543
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
544
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
545 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
546 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
547 return DicomTag(tag.getGTag(), tag.getETag());
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
548 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
549
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
550
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
551 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
552 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
553 return DicomTag(element.getGTag(), element.getETag());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
554 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
555
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 949
diff changeset
557 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element,
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
558 DicomToJsonFlags flags,
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
559 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
560 Encoding encoding,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
561 bool hasCodeExtensions,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
562 const std::set<DicomTag>& ignoreTagLength)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
563 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 if (!element.isLeaf())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
566 // This function is only applicable to leaf elements
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
567 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
570 char *c = NULL;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
571 if (element.isaString() &&
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
572 element.getString(c).good())
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
574 if (c == NULL) // This case corresponds to the empty string
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
576 return new DicomValue("", false);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
580 std::string s(c);
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
581 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions);
1854
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
582
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1928
diff changeset
583 if (maxStringLength != 0 &&
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
584 utf8.size() > maxStringLength &&
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
585 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
1854
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
586 {
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
587 return new DicomValue; // Too long, create a NULL value
1854
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
588 }
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
589 else
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
590 {
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
591 return new DicomValue(utf8, false);
e2c3d752ee1a prevent too long tags to be inserted
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
592 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
594 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
596
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
597 if (element.getVR() == EVR_UN)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
598 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
599 // Unknown value representation: Lookup in the dictionary. This
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
600 // is notably the case for private tags registered with the
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
601 // "Dictionary" configuration option.
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
602 DictionaryLocker locker;
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
603
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
604 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(),
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
605 element.getTag().getPrivateCreator());
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
606 if (entry != NULL &&
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
607 entry->getVR().isaString())
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
608 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
609 Uint8* data = NULL;
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
610
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
611 // At (*), we do not try and convert to UTF-8, as nothing says
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
612 // the encoding of the private tag is the same as that of the
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
613 // remaining of the DICOM dataset. Only go for ASCII strings.
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
614
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
615 if (element.getUint8Array(data) == EC_Normal &&
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
616 Toolbox::IsAsciiString(data, element.getLength())) // (*)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
617 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
618 if (data == NULL)
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
619 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
620 return new DicomValue("", false); // Empty string
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
621 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
622 else if (maxStringLength != 0 &&
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
623 element.getLength() > maxStringLength &&
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
624 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
625 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
626 return new DicomValue; // Too long, create a NULL value
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
627 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
628 else
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
629 {
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
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parents: 2126
diff changeset
630 std::string s(reinterpret_cast<const char*>(data), element.getLength());
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
631 return new DicomValue(s, false);
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
632 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
633 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
634 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
635 }
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
636
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
637
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
638 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
639 {
3959d33612cc initial commit
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parents:
diff changeset
640 // http://support.dcmtk.org/docs/dcvr_8h-source.html
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
641 switch (element.getVR())
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
642 {
3959d33612cc initial commit
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parents:
diff changeset
643
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
644 /**
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
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parents: 1737
diff changeset
645 * Deal with binary data (including PixelData).
0
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parents:
diff changeset
646 **/
306
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diff changeset
647
302
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diff changeset
648 case EVR_OB: // other byte
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parents: 291
diff changeset
649 case EVR_OF: // other float
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parents: 291
diff changeset
650 case EVR_OW: // other word
238134081136 modification of dicom files
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parents: 291
diff changeset
651 case EVR_UN: // unknown value representation
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df331354cea2 include binary in ToJson
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parents: 1738
diff changeset
652 case EVR_ox: // OB or OW depending on context
306
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parents: 305
diff changeset
653 case EVR_DS: // decimal string
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parents: 305
diff changeset
654 case EVR_IS: // integer string
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parents: 305
diff changeset
655 case EVR_AS: // age string
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parents: 305
diff changeset
656 case EVR_DA: // date string
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parents: 305
diff changeset
657 case EVR_DT: // date time string
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parents: 305
diff changeset
658 case EVR_TM: // time string
302
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parents: 291
diff changeset
659 case EVR_AE: // application entity title
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parents: 291
diff changeset
660 case EVR_CS: // code string
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parents: 291
diff changeset
661 case EVR_SH: // short string
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parents: 291
diff changeset
662 case EVR_LO: // long string
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parents: 291
diff changeset
663 case EVR_ST: // short text
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parents: 291
diff changeset
664 case EVR_LT: // long text
238134081136 modification of dicom files
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parents: 291
diff changeset
665 case EVR_UT: // unlimited text
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
666 case EVR_PN: // person name
238134081136 modification of dicom files
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parents: 291
diff changeset
667 case EVR_UI: // unique identifier
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
668 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
669 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
670 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
671 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull))
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
672 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
673 Uint8* data = NULL;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
674 if (element.getUint8Array(data) == EC_Normal)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
675 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
676 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
677 }
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
678 }
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
679
1818
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parents: 1792
diff changeset
680 return new DicomValue;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
681 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
682
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
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683 /**
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
684 * Numeric types
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
685 **/
0
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parents:
diff changeset
686
302
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parents: 291
diff changeset
687 case EVR_SL: // signed long
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parents: 291
diff changeset
688 {
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am@osimis.io
parents: 2528
diff changeset
689 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element);
302
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diff changeset
690 }
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parents: 291
diff changeset
691
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parents: 291
diff changeset
692 case EVR_SS: // signed short
238134081136 modification of dicom files
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parents: 291
diff changeset
693 {
2554
ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
694 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element);
302
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parents: 291
diff changeset
695 }
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parents: 291
diff changeset
696
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
697 case EVR_UL: // unsigned long
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
698 {
2554
ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
699 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element);
302
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
700 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
701
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parents: 291
diff changeset
702 case EVR_US: // unsigned short
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parents: 291
diff changeset
703 {
2554
ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
704 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element);
302
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parents: 291
diff changeset
705 }
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parents: 291
diff changeset
706
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
707 case EVR_FL: // float single-precision
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
708 {
2554
ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
709 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element);
302
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parents: 291
diff changeset
710 }
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parents: 291
diff changeset
711
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parents: 291
diff changeset
712 case EVR_FD: // float double-precision
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parents: 291
diff changeset
713 {
2554
ea63d9f90377 /tags now returns multiple numerical values in a \ separated string
am@osimis.io
parents: 2528
diff changeset
714 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element);
1131
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
715 }
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
716
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
717
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
718 /**
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
719 * Attribute tag.
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
720 **/
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
721
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
722 case EVR_AT:
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
723 {
1147
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
724 DcmTagKey tag;
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
725 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good())
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
726 {
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
727 DicomTag t(tag.getGroup(), tag.getElement());
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
728 return new DicomValue(t.Format(), false);
1147
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
729 }
1131
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
730 else
1147
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
731 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
732 return new DicomValue;
1147
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
733 }
302
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parents: 291
diff changeset
734 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
735
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
736
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
737 /**
302
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parents: 291
diff changeset
738 * Sequence types, should never occur at this point because of
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parents: 291
diff changeset
739 * "element.isLeaf()".
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parents: 291
diff changeset
740 **/
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
741
302
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parents: 291
diff changeset
742 case EVR_SQ: // sequence of items
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
743 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
744
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
745
302
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parents: 291
diff changeset
746 /**
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parents: 291
diff changeset
747 * Internal to DCMTK.
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parents: 291
diff changeset
748 **/
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
749
302
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parents: 291
diff changeset
750 case EVR_xs: // SS or US depending on context
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parents: 291
diff changeset
751 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
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parents: 291
diff changeset
752 case EVR_na: // na="not applicable", for data which has no VR
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parents: 291
diff changeset
753 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
754 case EVR_item: // used internally for items
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
755 case EVR_metainfo: // used internally for meta info datasets
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
756 case EVR_dataset: // used internally for datasets
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
757 case EVR_fileFormat: // used internally for DICOM files
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
758 case EVR_dicomDir: // used internally for DICOMDIR objects
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
759 case EVR_dirRecord: // used internally for DICOMDIR records
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
760 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
761 case EVR_pixelItem: // used internally for pixel items in a compressed image
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
762 case EVR_PixelData: // used internally for uncompressed pixeld data
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
763 case EVR_OverlayData: // used internally for overlay data
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
764 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
765
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
766
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
767 /**
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
768 * Default case.
238134081136 modification of dicom files
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parents: 291
diff changeset
769 **/
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
770
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
771 default:
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
772 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
773 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
774 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
775 catch (boost::bad_lexical_cast&)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
776 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
777 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
778 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
779 catch (std::bad_cast&)
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
780 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
781 return new DicomValue;
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
782 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
783 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
784
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
785
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
786 static Json::Value& PrepareNode(Json::Value& parent,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
787 DcmElement& element,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
788 DicomToJsonFormat format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
789 {
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
790 assert(parent.type() == Json::objectValue);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
791
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
792 DicomTag tag(FromDcmtkBridge::GetTag(element));
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
793 const std::string formattedTag = tag.Format();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
794
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
795 if (format == DicomToJsonFormat_Short)
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
796 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
797 parent[formattedTag] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
798 return parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
799 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
800
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
801 // This code gives access to the name of the private tags
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
802 std::string tagName = FromDcmtkBridge::GetTagName(element);
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
803
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
804 switch (format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
805 {
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
806 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
807 parent[tagName] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
808 return parent[tagName];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
809
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
810 case DicomToJsonFormat_Full:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
811 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
812 parent[formattedTag] = Json::objectValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
813 Json::Value& node = parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
814
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
815 if (element.isLeaf())
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
816 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
817 node["Name"] = tagName;
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
818
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
819 if (element.getTag().getPrivateCreator() != NULL)
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
820 {
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
821 node["PrivateCreator"] = element.getTag().getPrivateCreator();
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
822 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
823
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
824 return node;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
825 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
826 else
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
827 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
828 node["Name"] = tagName;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
829 node["Type"] = "Sequence";
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
830 node["Value"] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
831 return node["Value"];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
832 }
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
833 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
834
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
835 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
836 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
837 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
838 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
839
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
840
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
841 static void LeafValueToJson(Json::Value& target,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
842 const DicomValue& value,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
843 DicomToJsonFormat format,
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
844 DicomToJsonFlags flags,
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
845 unsigned int maxStringLength)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
846 {
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
847 Json::Value* targetValue = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
848 Json::Value* targetType = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
849
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
850 switch (format)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
851 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
852 case DicomToJsonFormat_Short:
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
853 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
854 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
855 assert(target.type() == Json::nullValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
856 targetValue = &target;
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
857 break;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
858 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
859
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
860 case DicomToJsonFormat_Full:
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
861 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
862 assert(target.type() == Json::objectValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
863 target["Value"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
864 target["Type"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
865 targetType = &target["Type"];
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
866 targetValue = &target["Value"];
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
867 break;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
868 }
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
869
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
870 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
871 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
872 }
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
873
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
874 assert(targetValue != NULL);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
875 assert(targetValue->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
876 assert(targetType == NULL || targetType->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
877
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
878 if (value.IsNull())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
879 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
880 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
881 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
882 *targetType = "Null";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
883 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
884 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
885 else if (value.IsBinary())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
886 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
887 if (flags & DicomToJsonFlags_ConvertBinaryToAscii)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
888 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
889 *targetValue = Toolbox::ConvertToAscii(value.GetContent());
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
890 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
891 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
892 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
893 std::string s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
894 value.FormatDataUriScheme(s);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
895 *targetValue = s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
896 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
897
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
898 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
899 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
900 *targetType = "Binary";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
901 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
902 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
903 else if (maxStringLength == 0 ||
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
904 value.GetContent().size() <= maxStringLength)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
905 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
906 *targetValue = value.GetContent();
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
907
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
908 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
909 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
910 *targetType = "String";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
911 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
912 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
913 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
914 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
915 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
916 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
917 *targetType = "TooLong";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
918 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
919 }
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
920 }
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
921
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
922
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
923 void FromDcmtkBridge::ElementToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
924 DcmElement& element,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
925 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
926 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
927 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
928 Encoding encoding,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
929 bool hasCodeExtensions,
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
930 const std::set<DicomTag>& ignoreTagLength,
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
931 unsigned int depth)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
932 {
1691
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
933 if (parent.type() == Json::nullValue)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
934 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
935 parent = Json::objectValue;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
936 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
937
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
938 assert(parent.type() == Json::objectValue);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
939 Json::Value& target = PrepareNode(parent, element, format);
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
940
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
941 if (element.isLeaf())
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
942 {
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
943 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
944 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
945 (element, flags, 0, encoding, hasCodeExtensions, ignoreTagLength));
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
946
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
947 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end())
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
948 {
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
949 LeafValueToJson(target, *v, format, flags, maxStringLength);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
950 }
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
951 else
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
952 {
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
953 LeafValueToJson(target, *v, format, flags, 0);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
954 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
955 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
956 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
957 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
958 assert(target.type() == Json::nullValue);
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
959 target = Json::arrayValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
960
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
961 // "All subclasses of DcmElement except for DcmSequenceOfItems
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
962 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
963 // etc. are not." The following dynamic_cast is thus OK.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
964 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
965
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
966 for (unsigned long i = 0; i < sequence.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
967 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
968 DcmItem* child = sequence.getItem(i);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
969 Json::Value& v = target.append(Json::objectValue);
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
970 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, hasCodeExtensions,
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
971 ignoreTagLength, depth + 1);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
972 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
973 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
974 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
975
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
976
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
977 void FromDcmtkBridge::DatasetToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
978 DcmItem& item,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
979 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
980 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
981 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
982 Encoding encoding,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
983 bool hasCodeExtensions,
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
984 const std::set<DicomTag>& ignoreTagLength,
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
985 unsigned int depth)
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
986 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
987 assert(parent.type() == Json::objectValue);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
988
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
989 for (unsigned long i = 0; i < item.card(); i++)
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
990 {
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
991 DcmElement* element = item.getElement(i);
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
992 if (element == NULL)
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
993 {
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
994 throw OrthancException(ErrorCode_InternalError);
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
995 }
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
996
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
997 DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
998
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
999 // New flag in Orthanc 1.9.1
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1000 if (depth == 0 &&
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1001 (flags & DicomToJsonFlags_StopAfterPixelData) &&
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1002 tag > DICOM_TAG_PIXEL_DATA)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1003 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1004 continue;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1005 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1006
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1007 /*element->getTag().isPrivate()*/
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1008 if (tag.IsPrivate() &&
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1009 !(flags & DicomToJsonFlags_IncludePrivateTags))
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1010 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1011 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1012 }
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1013
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1014 if (!(flags & DicomToJsonFlags_IncludeUnknownTags))
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
1015 {
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1016 DictionaryLocker locker;
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1017 if (locker->findEntry(element->getTag(), element->getTag().getPrivateCreator()) == NULL)
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1018 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1019 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1020 }
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
1021 }
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
1022
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1023 if (IsBinaryTag(element->getTag()))
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1024 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1025 // This is a binary tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1026 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1027 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary)))
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1028 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1029 continue;
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1030 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1031 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1032
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1033 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding,
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1034 hasCodeExtensions, ignoreTagLength, depth);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
1035 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
1036 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
1037
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
1038
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1039 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1040 DcmDataset& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1041 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1042 DicomToJsonFlags flags,
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
1043 unsigned int maxStringLength,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
1044 const std::set<DicomTag>& ignoreTagLength)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1045 {
4140
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4137
diff changeset
1046 const Encoding defaultEncoding = GetDefaultDicomEncoding();
0ddc5297a8ab centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4137
diff changeset
1047
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
1048 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
1049 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1050
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
1051 target = Json::objectValue;
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1052 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength, 0);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1053 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1054
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1055
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1056 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1057 DcmMetaInfo& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1058 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1059 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
1060 unsigned int maxStringLength)
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1061 {
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
1062 std::set<DicomTag> ignoreTagLength;
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1063 target = Json::objectValue;
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4501
diff changeset
1064 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, false, ignoreTagLength, 0);
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1065 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1066
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1067
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1068
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1069 static std::string GetTagNameInternal(DcmTag& tag)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1070 {
291
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parents: 285
diff changeset
1071 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1072 // Some patches for important tags because of different DICOM
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1073 // dictionaries between DCMTK versions
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1074 DicomTag tmp(tag.getGroup(), tag.getElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1075 std::string n = tmp.GetMainTagsName();
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1076 if (n.size() != 0)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1077 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1078 return n;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1079 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1080 // End of patches
291
4d7469f72a0b embedding of dicom dictionaries
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parents: 285
diff changeset
1081 }
106
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
1082
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1083 #if 0
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1084 // This version explicitly calls the dictionary
0
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1085 const DcmDataDictionary& dict = dcmDataDict.rdlock();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1086 const DcmDictEntry* entry = dict.findEntry(tag, NULL);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1087
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1088 std::string s(DcmTag_ERROR_TagName);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1089 if (entry != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1090 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1091 s = std::string(entry->getTagName());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1092 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1093
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1094 dcmDataDict.unlock();
3959d33612cc initial commit
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parents:
diff changeset
1095 return s;
305
86bb79522f19 name of the private tags
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parents: 304
diff changeset
1096 #else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1097 const char* name = tag.getTagName();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1098 if (name == NULL)
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parents: 304
diff changeset
1099 {
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1100 return DcmTag_ERROR_TagName;
305
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1101 }
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parents: 304
diff changeset
1102 else
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parents: 304
diff changeset
1103 {
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parents: 304
diff changeset
1104 return std::string(name);
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parents: 304
diff changeset
1105 }
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parents: 304
diff changeset
1106 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1107 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1108
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1109
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1110 std::string FromDcmtkBridge::GetTagName(const DicomTag& t,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1111 const std::string& privateCreator)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1112 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1113 DcmTag tag(t.GetGroup(), t.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1114
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1115 if (!privateCreator.empty())
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1116 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1117 tag.setPrivateCreator(privateCreator.c_str());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1118 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1119
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1120 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1121 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1122
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1123
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1124 std::string FromDcmtkBridge::GetTagName(const DcmElement& element)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1125 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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parents: 2076
diff changeset
1126 // Copy the tag to ensure const-correctness of DcmElement. Note
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1127 // that the private creator information is also copied.
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1128 DcmTag tag(element.getTag());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1129
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1130 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1131 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1132
4297
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parents: 4200
diff changeset
1133 std::string FromDcmtkBridge::GetTagName(const DicomElement &element)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1134 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1135 return GetTagName(element.GetTag(), "");
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1136 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1137
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1138
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1139
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1140 DicomTag FromDcmtkBridge::ParseTag(const char* name)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1141 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1142 DicomTag parsed(0, 0);
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1143 if (DicomTag::ParseHexadecimal(parsed, name))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1144 {
2662
47d812308d63 serialization of DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2554
diff changeset
1145 return parsed;
1861
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1146 }
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1147
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1148 #if 0
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1149 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1150 const DcmDictEntry* entry = dict.findEntry(name);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1151
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1152 if (entry == NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1153 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1154 dcmDataDict.unlock();
1582
bd1889029cbb encoding of exceptions
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parents: 1557
diff changeset
1155 throw OrthancException(ErrorCode_UnknownDicomTag);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1156 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1157 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1158 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1159 DcmTagKey key = entry->getKey();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1160 DicomTag tag(key.getGroup(), key.getElement());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1161 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1162 return tag;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1163 }
305
86bb79522f19 name of the private tags
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parents: 304
diff changeset
1164 #else
86bb79522f19 name of the private tags
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parents: 304
diff changeset
1165 DcmTag tag;
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1166 if (DcmTag::findTagFromName(name, tag).good())
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1167 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1168 return DicomTag(tag.getGTag(), tag.getETag());
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1169 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1170 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1171 {
2470
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1172 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\"";
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1173 throw OrthancException(ErrorCode_UnknownDicomTag);
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1174 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1175 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1176 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1177
4297
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1178 DicomTag FromDcmtkBridge::ParseTag(const std::string &name)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1179 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1180 return ParseTag(name.c_str());
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1181 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1182
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1183 bool FromDcmtkBridge::HasTag(const DicomMap &fields, const std::string &tagName)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1184 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1185 return fields.HasTag(ParseTag(tagName));
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1186 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1187
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1188 const DicomValue &FromDcmtkBridge::GetValue(const DicomMap &fields,
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1189 const std::string &tagName)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1190 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1191 return fields.GetValue(ParseTag(tagName));
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1192 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1193
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1194 void FromDcmtkBridge::SetValue(DicomMap &target,
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1195 const std::string &tagName,
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1196 DicomValue *value)
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1197 {
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1198 const DicomTag tag = ParseTag(tagName);
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1199 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value);
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1200 }
785a2713323e abi continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4200
diff changeset
1201
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1202
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1203 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag)
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1204 {
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1205 DcmTag tmp(tag.GetGroup(), tag.GetElement());
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1206 return tmp.isUnknownVR();
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1207 }
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1208
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1209
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1210 void FromDcmtkBridge::ToJson(Json::Value& result,
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1211 const DicomMap& values,
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1212 bool simplify)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1213 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1214 if (result.type() != Json::objectValue)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1215 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1216 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1217 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1218
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1219 result.clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1220
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1221 for (DicomMap::Content::const_iterator
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1222 it = values.content_.begin(); it != values.content_.end(); ++it)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1223 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1224 // TODO Inject PrivateCreator if some is available in the DicomMap?
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1225 const std::string tagName = GetTagName(it->first, "");
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1226
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1227 if (simplify)
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1228 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1229 if (it->second->IsNull())
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1230 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1231 result[tagName] = Json::nullValue;
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1232 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1233 else
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1234 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1235 // TODO IsBinary
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1236 result[tagName] = it->second->GetContent();
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1237 }
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1238 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1239 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1240 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1241 Json::Value value = Json::objectValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1242
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1243 value["Name"] = tagName;
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1244
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1245 if (it->second->IsNull())
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1246 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1247 value["Type"] = "Null";
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1248 value["Value"] = Json::nullValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1249 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1250 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1251 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1252 // TODO IsBinary
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1253 value["Type"] = "String";
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1254 value["Value"] = it->second->GetContent();
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1255 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1256
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1257 result[it->first.Format()] = value;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1258 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1259 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1260 }
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1261
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1262
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1263 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level)
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1264 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1265 char uid[100];
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1266
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1267 switch (level)
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1268 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1269 case ResourceType_Patient:
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1270 // The "PatientID" field is of type LO (Long String), 64
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1271 // Bytes Maximum. An UUID is of length 36, thus it can be used
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1272 // as a random PatientID.
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
1273 return Toolbox::GenerateUuid();
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1274
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1275 case ResourceType_Instance:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1276 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1277
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1278 case ResourceType_Series:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1279 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1280
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1281 case ResourceType_Study:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1282 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1283
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1284 default:
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1285 throw OrthancException(ErrorCode_ParameterOutOfRange);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1286 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1287 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1288
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1289
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1290
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1291 static bool SaveToMemoryBufferInternal(std::string& buffer,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1292 DcmFileFormat& dicom,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1293 E_TransferSyntax xfer)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1294 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1295 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1296
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1297 // Create a memory buffer with the proper size
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1298 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1299 const uint32_t estimatedSize = dicom.calcElementLength(xfer, encodingType); // (*)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1300 buffer.resize(estimatedSize);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1301 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1302
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1303 DcmOutputBufferStream ob(&buffer[0], buffer.size());
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1304
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1305 // Fill the memory buffer with the meta-header and the dataset
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1306 dicom.transferInit();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1307 OFCondition c = dicom.write(ob, xfer, encodingType, NULL,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1308 /*opt_groupLength*/ EGL_recalcGL,
3765
4a25727401cd first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3748
diff changeset
1309 /*opt_paddingType*/ EPD_noChange,
4a25727401cd first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3748
diff changeset
1310 /*padlen*/ 0, /*subPadlen*/ 0, /*instanceLength*/ 0,
4a25727401cd first transcoding to jpeg 8bpp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3748
diff changeset
1311 EWM_updateMeta /* creates new SOP instance UID on lossy */);
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1312 dicom.transferEnd();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1313
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1314 if (c.good())
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1315 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1316 // The DICOM file is successfully written, truncate the target
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1317 // buffer if its size was overestimated by (*)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1318 ob.flush();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1319
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1320 size_t effectiveSize = static_cast<size_t>(ob.tell());
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1321 if (effectiveSize < buffer.size())
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1322 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1323 buffer.resize(effectiveSize);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1324 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1325
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1326 return true;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1327 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1328 else
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1329 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1330 // Error
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1331 buffer.clear();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1332 return false;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1333 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1334 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1335
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1336
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1337 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer,
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1338 DcmDataset& dataSet)
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1339 {
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1340 // Determine the transfer syntax which shall be used to write the
3811
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1341 // information to the file. If not possible, switch to the Little
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1342 // Endian syntax, with explicit length.
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1343
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1344 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1345
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1346
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1347 /**
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1348 * Note that up to Orthanc 0.7.1 (inclusive), the
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1349 * "EXS_LittleEndianExplicit" was always used to save the DICOM
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1350 * dataset into memory. We now keep the original transfer syntax
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1351 * (if available).
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1352 **/
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1353 E_TransferSyntax xfer = dataSet.getCurrentXfer();
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1354 if (xfer == EXS_Unknown)
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1355 {
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1356 // No information about the original transfer syntax: This is
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1357 // most probably a DICOM dataset that was read from memory.
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1358 xfer = EXS_LittleEndianExplicit;
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1359 }
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1360
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1361 // Create the meta-header information
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1362 DcmFileFormat ff(&dataSet);
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1363 ff.validateMetaInfo(xfer);
1316
1c8dfedefefe Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1307
diff changeset
1364 ff.removeInvalidGroups();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1365
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1366 return SaveToMemoryBufferInternal(buffer, ff, xfer);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1367 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1368
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1369
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1370 bool FromDcmtkBridge::Transcode(DcmFileFormat& dicom,
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1371 DicomTransferSyntax syntax,
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1372 const DcmRepresentationParameter* representation)
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1373 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1374 E_TransferSyntax xfer;
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1375 if (!LookupDcmtkTransferSyntax(xfer, syntax))
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1376 {
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1377 throw OrthancException(ErrorCode_InternalError);
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1378 }
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
1379 else
3885
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1380 {
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1381 DicomTransferSyntax sourceSyntax;
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1382 bool known = LookupOrthancTransferSyntax(sourceSyntax, dicom);
3922
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1383
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1384 if (!dicom.chooseRepresentation(xfer, representation).good() ||
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1385 !dicom.canWriteXfer(xfer) ||
3811
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1386 !dicom.validateMetaInfo(xfer, EWM_updateMeta).good())
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1387 {
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1388 return false;
890af7156f19 fix transcoding to jpeg baseline
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3772
diff changeset
1389 }
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1390 else
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1391 {
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1392 dicom.removeInvalidGroups();
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1393
3885
e23026566536 removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
1394 if (known)
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1395 {
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1396 LOG(INFO) << "Transcoded an image from transfer syntax "
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1397 << GetTransferSyntaxUid(sourceSyntax) << " to "
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1398 << GetTransferSyntaxUid(syntax);
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1399 }
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1400 else
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1401 {
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1402 LOG(INFO) << "Transcoded an image from unknown transfer syntax to "
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1403 << GetTransferSyntaxUid(syntax);
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1404 }
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
1405
3872
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1406 return true;
b40dfa6dc8da working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3811
diff changeset
1407 }
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1408 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1409 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1410
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1411
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1412 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag)
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1413 {
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1414 DcmTag t(tag.GetGroup(), tag.GetElement());
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1415 return Convert(t.getEVR());
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1416 }
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1417
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1418 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr)
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1419 {
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1420 switch (vr)
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1421 {
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1422 case EVR_AE:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1423 return ValueRepresentation_ApplicationEntity;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1424
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1425 case EVR_AS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1426 return ValueRepresentation_AgeString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1427
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1428 case EVR_AT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1429 return ValueRepresentation_AttributeTag;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1430
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1431 case EVR_CS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1432 return ValueRepresentation_CodeString;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1433
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1434 case EVR_DA:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1435 return ValueRepresentation_Date;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1436
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1437 case EVR_DS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1438 return ValueRepresentation_DecimalString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1439
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1440 case EVR_DT:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1441 return ValueRepresentation_DateTime;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1442
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1443 case EVR_FL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1444 return ValueRepresentation_FloatingPointSingle;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1445
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1446 case EVR_FD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1447 return ValueRepresentation_FloatingPointDouble;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1448
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1449 case EVR_IS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1450 return ValueRepresentation_IntegerString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1451
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1452 case EVR_LO:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1453 return ValueRepresentation_LongString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1454
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1455 case EVR_LT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1456 return ValueRepresentation_LongText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1457
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1458 case EVR_OB:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1459 return ValueRepresentation_OtherByte;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1460
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1461 #if DCMTK_VERSION_NUMBER >= 361
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1462 case EVR_OD:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1463 return ValueRepresentation_OtherDouble;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1464 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1465
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1466 case EVR_OF:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1467 return ValueRepresentation_OtherFloat;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1468
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1469 #if DCMTK_VERSION_NUMBER >= 362
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1470 case EVR_OL:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1471 return ValueRepresentation_OtherLong;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1472 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1473
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1474 case EVR_OW:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1475 return ValueRepresentation_OtherWord;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1476
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1477 case EVR_PN:
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1478 return ValueRepresentation_PersonName;
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1479
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1480 case EVR_SH:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1481 return ValueRepresentation_ShortString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1482
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1483 case EVR_SL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1484 return ValueRepresentation_SignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1485
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1486 case EVR_SQ:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1487 return ValueRepresentation_Sequence;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1488
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1489 case EVR_SS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1490 return ValueRepresentation_SignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1491
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1492 case EVR_ST:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1493 return ValueRepresentation_ShortText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1494
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1495 case EVR_TM:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1496 return ValueRepresentation_Time;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1497
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1498 #if DCMTK_VERSION_NUMBER >= 361
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1499 case EVR_UC:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1500 return ValueRepresentation_UnlimitedCharacters;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1501 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1502
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1503 case EVR_UI:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1504 return ValueRepresentation_UniqueIdentifier;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1505
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1506 case EVR_UL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1507 return ValueRepresentation_UnsignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1508
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1509 case EVR_UN:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1510 return ValueRepresentation_Unknown;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1511
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1512 #if DCMTK_VERSION_NUMBER >= 361
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1513 case EVR_UR:
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1514 return ValueRepresentation_UniversalResource;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
1515 #endif
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1516
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1517 case EVR_US:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1518 return ValueRepresentation_UnsignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1519
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1520 case EVR_UT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1521 return ValueRepresentation_UnlimitedText;
1792
b769623c806c safety check
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1765
diff changeset
1522
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1523 default:
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1524 return ValueRepresentation_NotSupported;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1525 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1526 }
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1527
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1528
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1529 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1530 const std::string& privateCreator)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1531 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1532 if (tag.IsPrivate() &&
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1533 privateCreator.empty())
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1534 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1535 // This solves issue 140 (Modifying private tags with REST API
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1536 // changes VR from LO to UN)
4476
c1f36fd13730 migrate remaining links to issues in bitbucket to mercurial server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1537 // https://bugs.orthanc-server.com/show_bug.cgi?id=140
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1538 LOG(WARNING) << "Private creator should not be empty while creating a private tag: " << tag.Format();
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1539 }
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1540
3692
fd302ec6a502 fix for ubuntu 16.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1541 #if DCMTK_VERSION_NUMBER >= 362
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1542 DcmTag key(tag.GetGroup(), tag.GetElement());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1543 if (tag.IsPrivate())
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1544 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1545 return DcmItem::newDicomElement(key, privateCreator.c_str());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1546 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1547 else
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1548 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1549 return DcmItem::newDicomElement(key, NULL);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1550 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1551
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1552 #else
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1553 DcmTag key(tag.GetGroup(), tag.GetElement());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1554 if (tag.IsPrivate())
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1555 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1556 // https://forum.dcmtk.org/viewtopic.php?t=4527
3708
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3692
diff changeset
1557 LOG(WARNING) << "You are using DCMTK <= 3.6.1: All the private tags "
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1558 "are considered as having a binary value representation";
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1559 key.setPrivateCreator(privateCreator.c_str());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1560 return new DcmOtherByteOtherWord(key);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1561 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1562 else
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1563 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1564 return newDicomElement(key);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1565 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1566 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1567 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1568
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1569
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1570
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1571 void FromDcmtkBridge::FillElementWithString(DcmElement& element,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1572 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1573 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1574 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1575 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1576 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1577 const std::string* decoded = &utf8Value;
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1578
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1579 if (decodeDataUriScheme &&
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2831
diff changeset
1580 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1581 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1582 std::string mime;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1583 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1584 {
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1585 throw OrthancException(ErrorCode_BadFileFormat);
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1586 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1587
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1588 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1589 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1590 else if (dicomEncoding != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1591 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1592 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1593 decoded = &binary;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1594 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1595
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1596 if (IsBinaryTag(element.getTag()))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1597 {
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1598 bool ok;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1599
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1600 switch (element.getTag().getEVR())
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1601 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1602 case EVR_OW:
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1603 if (decoded->size() % sizeof(Uint16) != 0)
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1604 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1605 LOG(ERROR) << "A tag with OW VR must have an even number of bytes";
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1606 ok = false;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1607 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1608 else
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1609 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1610 ok = element.putUint16Array((const Uint16*) decoded->c_str(), decoded->size() / sizeof(Uint16)).good();
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1611 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1612
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1613 break;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1614
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1615 default:
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1616 ok = element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good();
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1617 break;
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1618 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1619
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1620 if (ok)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1621 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1622 return;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1623 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1624 else
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1625 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1626 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1627 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1628 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1629
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1630 bool ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1631
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1632 try
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1633 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1634 switch (element.getTag().getEVR())
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1635 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1636 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1637
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1638 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1639 * TODO.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1640 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1641
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1642 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1643 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1644 case EVR_AT: // attribute tag
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1645 throw OrthancException(ErrorCode_NotImplemented);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1646
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1647 case EVR_UN: // unknown value representation
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1648 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1649
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1650
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1651 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1652 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1653 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1654
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1655 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1656 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1657 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1658 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1659 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1660 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1661 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1662 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1663 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1664 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1665 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1666 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1667 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1668 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1669 case EVR_UI: // unique identifier
3209
f6374c36a671 documentation of DICOMweb in SDK, compatibility with DCMTK 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3199
diff changeset
1670 #if DCMTK_VERSION_NUMBER >= 361
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1671 case EVR_UC: // unlimited characters
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
1672 case EVR_UR: // URI/URL
3209
f6374c36a671 documentation of DICOMweb in SDK, compatibility with DCMTK 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3199
diff changeset
1673 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1674 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1675 ok = element.putString(decoded->c_str()).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1676 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1677 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1678
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1679
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1680 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1681 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1682 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1683
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1684 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1685 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1686 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1687 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1688 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1690 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1691 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1692 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1693 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1694 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1695
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1696 case EVR_UL: // unsigned long
3692
fd302ec6a502 fix for ubuntu 16.04
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1697 #if DCMTK_VERSION_NUMBER >= 362
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1698 case EVR_OL: // other long (requires byte-swapping)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1699 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1700 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1701 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1702 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1703 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1704
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1705 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1706 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1707 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1708 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1709 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1710
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1711 case EVR_FL: // float single-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1712 case EVR_OF: // other float (requires byte swapping)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1713 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1714 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1715 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1716 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1717
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1718 case EVR_FD: // float double-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1719 #if DCMTK_VERSION_NUMBER >= 361
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1720 case EVR_OD: // other double (requires byte-swapping)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1721 #endif
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1722 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1723 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1724 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1725 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1726
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1727
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1728 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1729 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1730 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1731
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1732 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1733 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1734 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1735 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1736 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1737
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1738
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1739 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1740 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1741 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1742
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1743 case EVR_ox: // OB or OW depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1744 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1745 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1746 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1747 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1748 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1749 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1750 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1751 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1752 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1753 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1754 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1755 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1756 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1757 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1758 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1759 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1760 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1761 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1762 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1763 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1764 catch (boost::bad_lexical_cast&)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1765 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1766 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1767 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1768
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1769 if (!ok)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1770 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1771 DicomTag tag(element.getTag().getGroup(), element.getTag().getElement());
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1772 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1773 "While creating a DICOM instance, tag (" + tag.Format() +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1774 ") has out-of-range value: \"" + (*decoded) + "\"");
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1775 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1776 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1777
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1778
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1779 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1780 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1781 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1782 Encoding dicomEncoding,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1783 const std::string& privateCreator)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1784 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1785 std::unique_ptr<DcmElement> element;
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1786
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1787 switch (value.type())
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1788 {
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1789 case Json::stringValue:
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1790 element.reset(CreateElementForTag(tag, privateCreator));
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1791 FillElementWithString(*element, value.asString(), decodeDataUriScheme, dicomEncoding);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1792 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1793
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1794 case Json::nullValue:
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1795 element.reset(CreateElementForTag(tag, privateCreator));
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1796 FillElementWithString(*element, "", decodeDataUriScheme, dicomEncoding);
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1797 break;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1798
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1799 case Json::arrayValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1800 {
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1801 const char* p = NULL;
4016
c675d77b82ab fix creation of sequence in private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4007
diff changeset
1802 if (tag.IsPrivate() &&
c675d77b82ab fix creation of sequence in private tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4007
diff changeset
1803 !privateCreator.empty())
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1804 {
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1805 p = privateCreator.c_str();
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1806 }
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1807
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1808 DcmTag key(tag.GetGroup(), tag.GetElement(), p);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1809 if (key.getEVR() != EVR_SQ)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1810 {
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1811 throw OrthancException(ErrorCode_BadParameterType,
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3922
diff changeset
1812 "Bad Parameter type for tag " + tag.Format());
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1813 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1814
2287
9f3414878c02 Fix Debian #865606 (orthanc FTBFS with libdcmtk-dev 3.6.1~20170228-2)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2275
diff changeset
1815 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1816 element.reset(sequence);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1817
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1818 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1819 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1820 std::unique_ptr<DcmItem> item(new DcmItem);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1821
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1822 switch (value[i].type())
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1823 {
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1824 case Json::objectValue:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1825 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1826 Json::Value::Members members = value[i].getMemberNames();
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1827 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1828 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1829 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding, privateCreator));
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1830 }
2831
b51233f03e7e missing break
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2830
diff changeset
1831 break;
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1832 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1833
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1834 case Json::arrayValue:
2831
b51233f03e7e missing break
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2830
diff changeset
1835 {
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1836 // Lua cannot disambiguate between an empty dictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1837 // and an empty array
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1838 if (value[i].size() != 0)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1839 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1840 throw OrthancException(ErrorCode_BadParameterType);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1841 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1842 break;
2831
b51233f03e7e missing break
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2830
diff changeset
1843 }
2830
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1844
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1845 default:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2662
diff changeset
1846 throw OrthancException(ErrorCode_BadParameterType);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1847 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1848
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1849 sequence->append(item.release());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1850 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1851
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1852 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1853 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1854
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1855 default:
3895
37cf1889667a more explicit error message
Alain Mazy <alain@mazy.be>
parents: 3811
diff changeset
1856 throw OrthancException(ErrorCode_BadParameterType, "Bad Parameter type for tag " + tag.Format());
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1857 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1858
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1859 return element.release();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1860 }
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1861
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1862
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1863 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1864 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1865 DcmElement *element = NULL;
1927
b60f27664b8f simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1866 if (!dataset.findAndGetElement(DCM_PixelData, element).good())
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1867 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1868 throw OrthancException(ErrorCode_BadFileFormat);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1869 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1870
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1871 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
3922
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1872
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1873 E_TransferSyntax repType;
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1874 const DcmRepresentationParameter *repParam = NULL;
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1875 pixelData.getCurrentRepresentationKey(repType, repParam);
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1876
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1877 DcmPixelSequence* pixelSequence = NULL;
3922
74eeadf5d51d fix access to compressed frames after transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3896
diff changeset
1878 if (!pixelData.getEncapsulatedRepresentation(repType, repParam, pixelSequence).good())
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1879 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1880 return NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1881 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1882 else
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1883 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1884 return pixelSequence;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1885 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1886 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1887
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1888
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1889 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1890 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1891 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1892 if (json.type() != Json::objectValue)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1893 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1894 throw OrthancException(ErrorCode_BadParameterType);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1895 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1896
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1897 Encoding encoding = defaultEncoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1898
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1899 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1900
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1901 // Look for SpecificCharacterSet (0008,0005) in the JSON file
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1902 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1903 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1904 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1905 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1906 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1907 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1908 if (value.type() != Json::stringValue ||
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1909 (value.asString().length() != 0 &&
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1910 !GetDicomEncoding(encoding, value.asCString())))
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1911 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1912 throw OrthancException(ErrorCode_BadRequest,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1913 "Unknown encoding while creating DICOM from JSON: " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1914 value.toStyledString());
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1915 }
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1916
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1917 if (value.asString().length() == 0)
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1918 {
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1919 return defaultEncoding;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1920 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1921 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1922 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1923
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1924 return encoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1925 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1926
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1927
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1928 static void SetString(DcmDataset& target,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1929 const DcmTag& tag,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1930 const std::string& value)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1931 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1932 if (!target.putAndInsertString(tag, value.c_str()).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1933 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1934 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1935 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1936 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1937
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1938
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1939 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1940 bool generateIdentifiers,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1941 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1942 Encoding defaultEncoding,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1943 const std::string& privateCreator)
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1944 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1945 std::unique_ptr<DcmDataset> result(new DcmDataset);
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1946 Encoding encoding = ExtractEncoding(json, defaultEncoding);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1947
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1948 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1949
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1950 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1951
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1952 bool hasPatientId = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1953 bool hasStudyInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1954 bool hasSeriesInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1955 bool hasSopInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1956
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1957 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1958 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1959 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1960 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1961
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1962 if (tag == DICOM_TAG_PATIENT_ID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1963 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1964 hasPatientId = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1965 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1966 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1967 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1968 hasStudyInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1969 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1970 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1971 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1972 hasSeriesInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1973 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1974 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1975 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1976 hasSopInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1977 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1978
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1979 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1980 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
1981 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator));
4200
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
1982
7112a8af0b63 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
1983 result->findAndDeleteElement(element->getTag());
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1984
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1985 DcmElement* tmp = element.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1986 if (!result->insert(tmp, false, false).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1987 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1988 delete tmp;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1989 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1990 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1991 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1992 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1993
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1994 if (!hasPatientId &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1995 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1996 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1997 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1998 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1999
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2000 if (!hasStudyInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2001 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2002 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2003 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2004 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2005
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2006 if (!hasSeriesInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2007 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2008 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2009 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2010 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2011
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2012 if (!hasSopInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2013 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2014 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2015 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2016 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2017
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2018 return result.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
2019 }
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2020
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2021
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2022 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer,
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2023 size_t size)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2024 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2025 DcmInputBufferStream is;
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2026 if (size > 0)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2027 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2028 is.setBuffer(buffer, size);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2029 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2030 is.setEos();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2031
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3708
diff changeset
2032 std::unique_ptr<DcmFileFormat> result(new DcmFileFormat);
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2033
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2034 result->transferInit();
3771
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2035
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2036 /**
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2037 * New in Orthanc 1.6.0: The "size" is given as an argument to the
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2038 * "read()" method. This can avoid huge memory consumption if
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2039 * parsing an invalid DICOM file, which can notably been observed
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2040 * by executing the integration test "test_upload_compressed" on
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2041 * valgrind running Orthanc.
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2042 **/
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3769
diff changeset
2043 if (!result->read(is, EXS_Unknown, EGL_noChange, size).good())
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2044 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
2045 throw OrthancException(ErrorCode_BadFileFormat,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
2046 "Cannot parse an invalid DICOM file (size: " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
2047 boost::lexical_cast<std::string>(size) + " bytes)");
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2048 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2049
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2050 result->loadAllDataIntoMemory();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2051 result->transferEnd();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2052
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2053 return result.release();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
2054 }
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2055
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2056
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2057 void FromDcmtkBridge::FromJson(DicomMap& target,
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2058 const Json::Value& source)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2059 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2060 if (source.type() != Json::objectValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2061 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2062 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2063 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2064
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2065 target.Clear();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2066
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2067 Json::Value::Members members = source.getMemberNames();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2068
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2069 for (size_t i = 0; i < members.size(); i++)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2070 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2071 const Json::Value& value = source[members[i]];
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2072
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2073 if (value.type() != Json::stringValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2074 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2075 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2076 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2077
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
2078 target.SetValue(ParseTag(members[i]), value.asString(), false);
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2079 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
2080 }
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2081
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2082
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2083 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset,
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2084 Encoding source,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2085 bool hasSourceCodeExtensions,
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2086 Encoding target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2087 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2088 // Recursive exploration of a dataset to change the encoding of
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2089 // each string-like element
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2090
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2091 if (source == target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2092 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2093 return;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2094 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2095
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2096 for (unsigned long i = 0; i < dataset.card(); i++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2097 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2098 DcmElement* element = dataset.getElement(i);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2099 if (element)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2100 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2101 if (element->isLeaf())
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2102 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2103 char *c = NULL;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2104 if (element->isaString() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2105 element->getString(c).good() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2106 c != NULL)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2107 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2108 std::string a = Toolbox::ConvertToUtf8(c, source, hasSourceCodeExtensions);
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2109 std::string b = Toolbox::ConvertFromUtf8(a, target);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2110 element->putString(b.c_str());
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2111 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2112 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2113 else
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2114 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2115 // "All subclasses of DcmElement except for DcmSequenceOfItems
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2116 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2117 // etc. are not." The following dynamic_cast is thus OK.
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2118 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2119
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2120 for (unsigned long j = 0; j < sequence.card(); j++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2121 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2122 ChangeStringEncoding(*sequence.getItem(j), source, hasSourceCodeExtensions, target);
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2123 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2124 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2125 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2126 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
2127 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2128
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
2129
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2130 void FromDcmtkBridge::InitializeCodecs()
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2131 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2132 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
2528
832217e4e872 old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2522
diff changeset
2133 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK";
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2134 DJLSDecoderRegistration::registerCodecs();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2135 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2136 DJLSEncoderRegistration::registerCodecs();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2137 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2138 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2139
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2140 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
2528
832217e4e872 old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2522
diff changeset
2141 LOG(INFO) << "Registering JPEG codecs in DCMTK";
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2142 DJDecoderRegistration::registerCodecs();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2143 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2144 DJEncoderRegistration::registerCodecs();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2145 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2146 #endif
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2147
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2148 LOG(INFO) << "Registering RLE codecs in DCMTK";
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2149 DcmRLEDecoderRegistration::registerCodecs();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2150 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2151 DcmRLEEncoderRegistration::registerCodecs();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2152 #endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2153 }
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2154
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2155
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2156 void FromDcmtkBridge::FinalizeCodecs()
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2157 {
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2158 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2159 // Unregister JPEG-LS codecs
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2160 DJLSDecoderRegistration::cleanup();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2161 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2162 DJLSEncoderRegistration::cleanup();
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2163 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2164 #endif
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2165
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2166 #if ORTHANC_ENABLE_DCMTK_JPEG == 1
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2167 // Unregister JPEG codecs
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2168 DJDecoderRegistration::cleanup();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2169 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
3743
33c19a6643e1 creating IDicomTranscoder abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3730
diff changeset
2170 DJEncoderRegistration::cleanup();
3727
090022f1b5e1 auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
2171 # endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2172 #endif
3748
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2173
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2174 DcmRLEDecoderRegistration::cleanup();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2175 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2176 DcmRLEEncoderRegistration::cleanup();
ca36e3f1112c transcoding to uncompressed transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3743
diff changeset
2177 #endif
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2364
diff changeset
2178 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2179
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2180
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2181
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2182 // Forward declaration
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2183 static void ApplyVisitorToElement(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2184 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2185 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2186 const std::vector<size_t>& parentIndexes,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2187 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2188 bool hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2189
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2190 static void ApplyVisitorToDataset(DcmItem& dataset,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2191 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2192 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2193 const std::vector<size_t>& parentIndexes,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2194 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2195 bool hasCodeExtensions)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2196 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2197 assert(parentTags.size() == parentIndexes.size());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2198
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2199 for (unsigned long i = 0; i < dataset.card(); i++)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2200 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2201 DcmElement* element = dataset.getElement(i);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2202 if (element == NULL)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2203 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2204 throw OrthancException(ErrorCode_InternalError);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2205 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2206 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2207 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2208 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2209 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2210 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2211 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2212
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2213
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2214 static void ApplyVisitorToLeaf(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2215 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2216 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2217 const std::vector<size_t>& parentIndexes,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2218 const DicomTag& tag,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2219 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2220 bool hasCodeExtensions)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2221 {
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2222 // TODO - Merge this function, that is more recent, with ConvertLeafElement()
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2223
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2224 assert(element.isLeaf());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2225
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2226 DcmEVR evr = element.getTag().getEVR();
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2227
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2228
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2229 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2230 * Fix the EVR for types internal to DCMTK
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2231 **/
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2232
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2233 if (evr == EVR_ox) // OB or OW depending on context
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2234 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2235 evr = EVR_OB;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2236 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2237
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2238 if (evr == EVR_UNKNOWN || // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2239 evr == EVR_UNKNOWN2B) // used internally for elements with unknown VR with 2-byte length field in explicit VR
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2240 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2241 evr = EVR_UN;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2242 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2243
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2244 const ValueRepresentation vr = FromDcmtkBridge::Convert(evr);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2245
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2246
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2247 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2248 * Deal with binary data (including PixelData).
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2249 **/
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2250
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2251 if (evr == EVR_OB || // other byte
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2252 evr == EVR_OW || // other word
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2253 evr == EVR_UN) // unknown value representation
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2254 {
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2255 Uint16* data16 = NULL;
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2256 Uint8* data = NULL;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2257
3199
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2258 if (evr == EVR_OW &&
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2259 element.getUint16Array(data16) == EC_Normal)
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2260 {
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2261 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data16, element.getLength());
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2262 }
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2263 else if (evr != EVR_OW &&
9316f341e40f unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3198
diff changeset
2264 element.getUint8Array(data) == EC_Normal)
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2265 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2266 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength());
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2267 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2268 else
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2269 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2270 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2271 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2272
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2273 return; // We're done
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2274 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2275
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2276
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2277 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2278 * Deal with plain strings (and convert them to UTF-8)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2279 **/
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2280
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2281 char *c = NULL;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2282 if (element.isaString() &&
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2283 element.getString(c).good())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2284 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2285 std::string utf8;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2286
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2287 if (c != NULL) // This case corresponds to the empty string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2288 {
3448
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2289 if (element.getTag() == DCM_SpecificCharacterSet)
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2290 {
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2291 utf8.assign(c);
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2292 }
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2293 else
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2294 {
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2295 std::string s(c);
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2296 utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions);
b3bdd6dc10f2 don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3302
diff changeset
2297 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2298 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2299
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2300 std::string newValue;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2301 ITagVisitor::Action action = visitor.VisitString
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2302 (newValue, parentTags, parentIndexes, tag, vr, utf8);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2303
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2304 switch (action)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2305 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2306 case ITagVisitor::Action_None:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2307 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2308
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2309 case ITagVisitor::Action_Replace:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2310 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2311 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding);
2522
ce2dfba9417c fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2513
diff changeset
2312 if (element.putString(s.c_str()) != EC_Normal)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2313 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
2314 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
2315 "Cannot replace value of tag: " + tag.Format());
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2316 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2317
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2318 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2319 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2320
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2321 default:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2322 throw OrthancException(ErrorCode_InternalError);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2323 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2324
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2325 return; // We're done
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2326 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2327
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2328
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2329 try
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2330 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2331 // http://support.dcmtk.org/docs/dcvr_8h-source.html
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2332 switch (evr)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2333 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2334
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2335 /**
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2336 * Plain string values.
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2337 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2338
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2339 case EVR_DS: // decimal string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2340 case EVR_IS: // integer string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2341 case EVR_AS: // age string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2342 case EVR_DA: // date string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2343 case EVR_DT: // date time string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2344 case EVR_TM: // time string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2345 case EVR_AE: // application entity title
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2346 case EVR_CS: // code string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2347 case EVR_SH: // short string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2348 case EVR_LO: // long string
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2349 case EVR_ST: // short text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2350 case EVR_LT: // long text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2351 case EVR_UT: // unlimited text
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2352 case EVR_PN: // person name
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2353 case EVR_UI: // unique identifier
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2354 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2355 Uint8* data = NULL;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2356
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2357 if (element.getUint8Array(data) == EC_Normal)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2358 {
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2359 const Uint32 length = element.getLength();
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2360 Uint32 l = 0;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2361 while (l < length &&
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2362 data[l] != 0)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2363 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2364 l++;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2365 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2366
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2367 if (l == length)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2368 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2369 // Not a null-terminated plain string
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2370 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2371 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2372 else
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2373 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2374 std::string ignored;
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2375 std::string s(reinterpret_cast<const char*>(data), l);
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2376 ITagVisitor::Action action = visitor.VisitString
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2377 (ignored, parentTags, parentIndexes, tag, vr,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2378 Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions));
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2379
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2380 if (action != ITagVisitor::Action_None)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2381 {
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2382 LOG(WARNING) << "Cannot replace this string tag: "
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2383 << FromDcmtkBridge::GetTagName(element)
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2384 << " (" << tag.Format() << ")";
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2385 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2386 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2387 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2388 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2389 {
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2390 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2391 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2392
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2393 return;
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2394 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2395
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2396 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2397 * Numeric types
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2398 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2399
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2400 case EVR_SL: // signed long
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2401 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2402 DcmSignedLong& content = dynamic_cast<DcmSignedLong&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2403
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2404 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2405 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2406
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2407 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2408 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2409 Sint32 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2410 if (content.getSint32(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2411 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2412 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2413 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2414 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2415
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2416 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2417 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2418 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2419
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2420 case EVR_SS: // signed short
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2421 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2422 DcmSignedShort& content = dynamic_cast<DcmSignedShort&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2423
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2424 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2425 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2426
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2427 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2428 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2429 Sint16 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2430 if (content.getSint16(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2431 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2432 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2433 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2434 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2435
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2436 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2437 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2438 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2439
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2440 case EVR_UL: // unsigned long
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2441 #if DCMTK_VERSION_NUMBER >= 362
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2442 case EVR_OL:
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2443 #endif
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2444 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2445 DcmUnsignedLong& content = dynamic_cast<DcmUnsignedLong&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2446
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2447 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2448 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2449
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2450 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2451 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2452 Uint32 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2453 if (content.getUint32(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2454 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2455 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2456 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2457 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2458
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2459 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2460 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2461 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2462
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2463 case EVR_US: // unsigned short
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2464 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2465 DcmUnsignedShort& content = dynamic_cast<DcmUnsignedShort&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2466
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2467 std::vector<int64_t> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2468 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2469
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2470 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2471 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2472 Uint16 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2473 if (content.getUint16(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2474 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2475 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2476 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2477 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2478
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2479 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2480 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2481 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2482
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2483 case EVR_FL: // float single-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2484 case EVR_OF:
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2485 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2486 DcmFloatingPointSingle& content = dynamic_cast<DcmFloatingPointSingle&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2487
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2488 std::vector<double> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2489 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2490
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2491 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2492 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2493 Float32 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2494 if (content.getFloat32(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2495 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2496 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2497 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2498 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2499
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2500 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2501 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2502 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2503
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2504 case EVR_FD: // float double-precision
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2505 #if DCMTK_VERSION_NUMBER >= 361
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2506 case EVR_OD:
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
2507 #endif
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2508 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2509 DcmFloatingPointDouble& content = dynamic_cast<DcmFloatingPointDouble&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2510
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2511 std::vector<double> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2512 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2513
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2514 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2515 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2516 Float64 f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2517 if (content.getFloat64(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2518 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2519 values.push_back(f);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2520 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2521 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2522
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2523 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2524 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2525 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2526
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2527
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2528 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2529 * Attribute tag.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2530 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2531
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2532 case EVR_AT:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2533 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2534 DcmAttributeTag& content = dynamic_cast<DcmAttributeTag&>(element);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2535
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2536 std::vector<DicomTag> values;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2537 values.reserve(content.getVM());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2538
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2539 for (unsigned long i = 0; i < content.getVM(); i++)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2540 {
3194
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2541 DcmTagKey f;
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2542 if (content.getTagVal(f, i).good())
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2543 {
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2544 DicomTag t(f.getGroup(), f.getElement());
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2545 values.push_back(t);
47ef29168698 support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3156
diff changeset
2546 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2547 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2548
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2549 assert(vr == ValueRepresentation_AttributeTag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2550 visitor.VisitAttributes(parentTags, parentIndexes, tag, values);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2551 break;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2552 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2553
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2554
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2555 /**
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2556 * Sequence types, should never occur at this point because of
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2557 * "element.isLeaf()".
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2558 **/
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2559
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2560 case EVR_SQ: // sequence of items
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2561 {
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2562 return;
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2563 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2564
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2565
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2566 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2567 * Internal to DCMTK.
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2568 **/
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2569
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2570 case EVR_xs: // SS or US depending on context
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2571 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2572 case EVR_na: // na="not applicable", for data which has no VR
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2573 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2574 case EVR_item: // used internally for items
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2575 case EVR_metainfo: // used internally for meta info datasets
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2576 case EVR_dataset: // used internally for datasets
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2577 case EVR_fileFormat: // used internally for DICOM files
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2578 case EVR_dicomDir: // used internally for DICOMDIR objects
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2579 case EVR_dirRecord: // used internally for DICOMDIR records
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2580 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2581 case EVR_pixelItem: // used internally for pixel items in a compressed image
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2582 case EVR_PixelData: // used internally for uncompressed pixeld data
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2583 case EVR_OverlayData: // used internally for overlay data
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2584 {
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2585 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2586 return;
3198
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2587 }
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2588
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2589
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2590 /**
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2591 * Default case.
7724ed267b5c unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3195
diff changeset
2592 **/
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2593
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2594 default:
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2595 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2596 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2597 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2598 catch (boost::bad_lexical_cast&)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2599 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2600 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2601 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2602 catch (std::bad_cast&)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2603 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2604 return;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2605 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2606 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2607
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2608
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2609 static void ApplyVisitorToElement(DcmElement& element,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2610 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2611 const std::vector<DicomTag>& parentTags,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2612 const std::vector<size_t>& parentIndexes,
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2613 Encoding encoding,
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2614 bool hasCodeExtensions)
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2615 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2616 assert(parentTags.size() == parentIndexes.size());
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2617
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2618 DicomTag tag(FromDcmtkBridge::Convert(element.getTag()));
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2619
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2620 if (element.isLeaf())
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2621 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2622 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding, hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2623 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2624 else
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2625 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2626 // "All subclasses of DcmElement except for DcmSequenceOfItems
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2627 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2628 // etc. are not." The following dynamic_cast is thus OK.
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2629 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2630
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2631 if (sequence.card() == 0)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2632 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2633 visitor.VisitEmptySequence(parentTags, parentIndexes, tag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2634 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2635 else
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2636 {
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2637 std::vector<DicomTag> tags = parentTags;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2638 std::vector<size_t> indexes = parentIndexes;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2639 tags.push_back(tag);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2640 indexes.push_back(0);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2641
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2642 for (unsigned long i = 0; i < sequence.card(); i++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2643 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2644 indexes.back() = static_cast<size_t>(i);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2645 DcmItem* child = sequence.getItem(i);
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2646 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding, hasCodeExtensions);
3195
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3194
diff changeset
2647 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2648 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2649 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2650 }
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2651
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2652
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2653 void FromDcmtkBridge::Apply(DcmItem& dataset,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2654 ITagVisitor& visitor,
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2655 Encoding defaultEncoding)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2656 {
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2657 std::vector<DicomTag> parentTags;
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2658 std::vector<size_t> parentIndexes;
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2659 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2660 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3209
diff changeset
2661 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions);
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2470
diff changeset
2662 }
3882
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2663
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2664
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2665
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2666 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target,
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2667 DcmFileFormat& dicom)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2668 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2669 if (dicom.getDataset() == NULL)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2670 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2671 throw OrthancException(ErrorCode_InternalError);
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2672 }
4334
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2673 else
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2674 {
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2675 return LookupOrthancTransferSyntax(target, *dicom.getDataset());
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2676 }
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2677 }
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2678
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2679
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2680 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target,
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2681 DcmDataset& dataset)
b2366bc023f8 Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4313
diff changeset
2682 {
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3882
diff changeset
2683 E_TransferSyntax xfer = dataset.getCurrentXfer();
3882
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2684 if (xfer == EXS_Unknown)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2685 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2686 dataset.updateOriginalXfer();
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2687 xfer = dataset.getOriginalXfer();
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2688 if (xfer == EXS_Unknown)
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2689 {
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2690 throw OrthancException(ErrorCode_BadFileFormat,
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2691 "Cannot determine the transfer syntax of the DICOM instance");
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2692 }
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2693 }
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2694
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2695 return FromDcmtkBridge::LookupOrthancTransferSyntax(target, xfer);
904575738462 implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
2696 }
4501
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2697
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2698
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2699 void FromDcmtkBridge::LogMissingTagsForStore(DcmDataset& dicom)
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2700 {
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2701 std::string patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid;
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2702
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2703 const char* c = NULL;
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2704 if (dicom.findAndGetString(DCM_PatientID, c).good() &&
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2705 c != NULL)
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2706 {
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2707 patientId.assign(c);
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2708 }
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2709
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2710 c = NULL;
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2711 if (dicom.findAndGetString(DCM_StudyInstanceUID, c).good() &&
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2712 c != NULL)
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2713 {
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2714 studyInstanceUid.assign(c);
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2715 }
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2716
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2717 c = NULL;
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2718 if (dicom.findAndGetString(DCM_SeriesInstanceUID, c).good() &&
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2719 c != NULL)
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2720 {
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2721 seriesInstanceUid.assign(c);
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2722 }
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2723
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2724 c = NULL;
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2725 if (dicom.findAndGetString(DCM_SOPInstanceUID, c).good() &&
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2726 c != NULL)
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2727 {
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2728 sopInstanceUid.assign(c);
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2729 }
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2730
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2731 DicomMap::LogMissingTagsForStore(patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid);
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
2732 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2733 }
3730
ae31ba2b09a6 toolbox: LookupTransferSyntax()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3727
diff changeset
2734
ae31ba2b09a6 toolbox: LookupTransferSyntax()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3727
diff changeset
2735
ae31ba2b09a6 toolbox: LookupTransferSyntax()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3727
diff changeset
2736 #include "./FromDcmtkBridge_TransferSyntaxes.impl.h"