annotate OrthancServer/FromDcmtkBridge.cpp @ 2216:9a8fab016145

sample worklist plugin fine-tuning the C-Find query
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 12 Dec 2016 11:01:09 +0100
parents e3fd5bc429a2
children 3eefb84ac0bd
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "PrecompiledHeadersServer.h"
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34
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35 #ifndef NOMINMAX
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36 #define NOMINMAX
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37 #endif
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39 #include "FromDcmtkBridge.h"
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40 #include "ToDcmtkBridge.h"
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41 #include "../Core/Logging.h"
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42 #include "../Core/SystemToolbox.h"
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43 #include "../Core/Toolbox.h"
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44 #include "../Core/TemporaryFile.h"
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45 #include "../Core/OrthancException.h"
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46
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47 #include <list>
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48 #include <limits>
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49
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50 #include <boost/lexical_cast.hpp>
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51 #include <boost/filesystem.hpp>
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52 #include <boost/algorithm/string/predicate.hpp>
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53
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54 #include <dcmtk/dcmdata/dcdeftag.h>
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55 #include <dcmtk/dcmdata/dcdicent.h>
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56 #include <dcmtk/dcmdata/dcdict.h>
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57 #include <dcmtk/dcmdata/dcfilefo.h>
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58 #include <dcmtk/dcmdata/dcostrmb.h>
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59 #include <dcmtk/dcmdata/dcpixel.h>
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60 #include <dcmtk/dcmdata/dcuid.h>
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61 #include <dcmtk/dcmdata/dcistrmb.h>
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62
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63 #include <dcmtk/dcmdata/dcvrae.h>
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64 #include <dcmtk/dcmdata/dcvras.h>
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65 #include <dcmtk/dcmdata/dcvrat.h>
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66 #include <dcmtk/dcmdata/dcvrcs.h>
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67 #include <dcmtk/dcmdata/dcvrda.h>
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68 #include <dcmtk/dcmdata/dcvrds.h>
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69 #include <dcmtk/dcmdata/dcvrdt.h>
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70 #include <dcmtk/dcmdata/dcvrfd.h>
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71 #include <dcmtk/dcmdata/dcvrfl.h>
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72 #include <dcmtk/dcmdata/dcvris.h>
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73 #include <dcmtk/dcmdata/dcvrlo.h>
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74 #include <dcmtk/dcmdata/dcvrlt.h>
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75 #include <dcmtk/dcmdata/dcvrpn.h>
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76 #include <dcmtk/dcmdata/dcvrsh.h>
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77 #include <dcmtk/dcmdata/dcvrsl.h>
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78 #include <dcmtk/dcmdata/dcvrss.h>
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79 #include <dcmtk/dcmdata/dcvrst.h>
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80 #include <dcmtk/dcmdata/dcvrtm.h>
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81 #include <dcmtk/dcmdata/dcvrui.h>
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82 #include <dcmtk/dcmdata/dcvrul.h>
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83 #include <dcmtk/dcmdata/dcvrus.h>
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84 #include <dcmtk/dcmdata/dcvrut.h>
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85
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86
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87 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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88 #include <EmbeddedResources.h>
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89 #endif
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91
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92 namespace Orthanc
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93 {
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94 static inline uint16_t GetCharValue(char c)
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95 {
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96 if (c >= '0' && c <= '9')
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97 return c - '0';
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98 else if (c >= 'a' && c <= 'f')
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99 return c - 'a' + 10;
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100 else if (c >= 'A' && c <= 'F')
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101 return c - 'A' + 10;
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102 else
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103 return 0;
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104 }
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105
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106 static inline uint16_t GetTagValue(const char* c)
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107 {
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108 return ((GetCharValue(c[0]) << 12) +
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109 (GetCharValue(c[1]) << 8) +
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110 (GetCharValue(c[2]) << 4) +
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111 GetCharValue(c[3]));
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112 }
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113
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114
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115 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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116 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary,
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117 EmbeddedResources::FileResourceId resource)
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118 {
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119 std::string content;
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120 EmbeddedResources::GetFileResource(content, resource);
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121
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122 TemporaryFile tmp;
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123 tmp.Write(content);
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124
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125 if (!dictionary.loadDictionary(tmp.GetPath().c_str()))
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126 {
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127 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that "
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128 << "your TEMP directory does not contain special characters.";
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129 throw OrthancException(ErrorCode_InternalError);
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130 }
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131 }
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132
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133 #else
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134 static void LoadExternalDictionary(DcmDataDictionary& dictionary,
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135 const std::string& directory,
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136 const std::string& filename)
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137 {
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138 boost::filesystem::path p = directory;
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139 p = p / filename;
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140
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141 LOG(WARNING) << "Loading the external DICOM dictionary " << p;
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142
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143 if (!dictionary.loadDictionary(p.string().c_str()))
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144 {
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145 throw OrthancException(ErrorCode_InternalError);
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146 }
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147 }
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148 #endif
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149
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150
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151 namespace
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152 {
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153 class DictionaryLocker
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154 {
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155 private:
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156 DcmDataDictionary& dictionary_;
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157
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158 public:
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159 DictionaryLocker() : dictionary_(dcmDataDict.wrlock())
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160 {
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161 }
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162
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163 ~DictionaryLocker()
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164 {
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165 dcmDataDict.unlock();
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166 }
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167
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168 DcmDataDictionary& operator*()
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169 {
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170 return dictionary_;
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171 }
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172
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173 DcmDataDictionary* operator->()
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174 {
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175 return &dictionary_;
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176 }
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177 };
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178 }
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179
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180
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181 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary)
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182 {
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183 {
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184 DictionaryLocker locker;
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185
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186 locker->clear();
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187
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188 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
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189 LOG(WARNING) << "Loading the embedded dictionaries";
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190 /**
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191 * Do not load DICONDE dictionary, it breaks the other tags. The
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192 * command "strace storescu 2>&1 |grep dic" shows that DICONDE
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193 * dictionary is not loaded by storescu.
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194 **/
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195 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE);
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196
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197 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM);
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198
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199 if (loadPrivateDictionary)
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200 {
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201 LOG(INFO) << "Loading the embedded dictionary of private tags";
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202 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE);
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203 }
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204 else
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205 {
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206 LOG(INFO) << "The dictionary of private tags has not been loaded";
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207 }
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208
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209 #elif defined(__linux__) || defined(__FreeBSD_kernel__)
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210 std::string path = DCMTK_DICTIONARY_DIR;
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211
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212 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE);
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213 if (env != NULL)
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214 {
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215 path = std::string(env);
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216 }
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217
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218 LoadExternalDictionary(*locker, path, "dicom.dic");
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219
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220 if (loadPrivateDictionary)
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221 {
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222 LoadExternalDictionary(*locker, path, "private.dic");
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223 }
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224 else
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225 {
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226 LOG(INFO) << "The dictionary of private tags has not been loaded";
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227 }
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228
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229 #else
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230 #error Support your platform here
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231 #endif
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232 }
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233
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234 /* make sure data dictionary is loaded */
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235 if (!dcmDataDict.isDictionaryLoaded())
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236 {
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237 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE;
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238 throw OrthancException(ErrorCode_InternalError);
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239 }
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240
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241 {
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242 // Test the dictionary with a simple DICOM tag
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243 DcmTag key(0x0010, 0x1030); // This is PatientWeight
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244 if (key.getEVR() != EVR_DS)
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245 {
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246 LOG(ERROR) << "The DICOM dictionary has not been correctly read";
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247 throw OrthancException(ErrorCode_InternalError);
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248 }
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249 }
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250 }
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251
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252
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253 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag,
2006
6301bbcbcaed more generic support of value representations
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diff changeset
254 ValueRepresentation vr,
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255 const std::string& name,
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256 unsigned int minMultiplicity,
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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diff changeset
257 unsigned int maxMultiplicity,
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diff changeset
258 const std::string& privateCreator)
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259 {
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260 if (minMultiplicity < 1)
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diff changeset
261 {
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diff changeset
262 throw OrthancException(ErrorCode_ParameterOutOfRange);
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263 }
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diff changeset
264
1765
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diff changeset
265 bool arbitrary = false;
1657
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266 if (maxMultiplicity == 0)
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267 {
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268 maxMultiplicity = DcmVariableVM;
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269 arbitrary = true;
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270 }
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271 else if (maxMultiplicity < minMultiplicity)
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272 {
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273 throw OrthancException(ErrorCode_ParameterOutOfRange);
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274 }
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275
2006
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276 DcmEVR evr = ToDcmtkBridge::Convert(vr);
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277
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278 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " "
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279 << name << " (multiplicity: " << minMultiplicity << "-"
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280 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")";
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281
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282 std::auto_ptr<DcmDictEntry> entry;
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283 if (privateCreator.empty())
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284 {
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285 if (tag.GetGroup() % 2 == 1)
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286 {
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287 char buf[128];
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288 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), "
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289 "but no private creator was associated with it",
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290 tag.GetGroup(), tag.GetElement());
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291 LOG(WARNING) << buf;
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292 }
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293
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294 entry.reset(new DcmDictEntry(tag.GetGroup(),
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295 tag.GetElement(),
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296 evr, name.c_str(),
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297 static_cast<int>(minMultiplicity),
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298 static_cast<int>(maxMultiplicity),
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299 NULL /* version */,
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300 OFTrue /* doCopyString */,
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301 NULL /* private creator */));
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302 }
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diff changeset
303 else
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304 {
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305 // "Private Data Elements have an odd Group Number that is not
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306 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
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307 // (FFFF,eeee)."
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308 if (tag.GetGroup() % 2 == 0 /* even */ ||
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309 tag.GetGroup() == 0x0001 ||
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310 tag.GetGroup() == 0x0003 ||
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311 tag.GetGroup() == 0x0005 ||
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diff changeset
312 tag.GetGroup() == 0x0007 ||
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diff changeset
313 tag.GetGroup() == 0xffff)
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314 {
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diff changeset
315 char buf[128];
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316 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009",
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diff changeset
317 tag.GetGroup(), tag.GetElement());
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318 LOG(ERROR) << buf;
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319 throw OrthancException(ErrorCode_ParameterOutOfRange);
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320 }
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321
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diff changeset
322 entry.reset(new DcmDictEntry(tag.GetGroup(),
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323 tag.GetElement(),
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324 evr, name.c_str(),
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325 static_cast<int>(minMultiplicity),
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326 static_cast<int>(maxMultiplicity),
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327 "private" /* version */,
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328 OFTrue /* doCopyString */,
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329 privateCreator.c_str()));
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330 }
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diff changeset
331
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diff changeset
332 entry->setGroupRangeRestriction(DcmDictRange_Unspecified);
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diff changeset
333 entry->setElementRangeRestriction(DcmDictRange_Unspecified);
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
334
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
335 {
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
336 DictionaryLocker locker;
2116
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diff changeset
337
2fabd1073728 prevent registering two tags with the same symbolic name
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338 if (locker->findEntry(name.c_str()))
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diff changeset
339 {
2fabd1073728 prevent registering two tags with the same symbolic name
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diff changeset
340 LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\"";
2fabd1073728 prevent registering two tags with the same symbolic name
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341 throw OrthancException(ErrorCode_AlreadyExistingTag);
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diff changeset
342 }
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diff changeset
343
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diff changeset
344 locker->addEntry(entry.release());
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diff changeset
345 }
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diff changeset
346 }
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
347
5360cdba70d8 New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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diff changeset
348
1936
dba0db0a94b4 generalization
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diff changeset
349 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset,
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
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diff changeset
350 Encoding defaultEncoding)
956
2fd5a163776d primitives for proper encoding handling
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diff changeset
351 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
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diff changeset
352 Encoding encoding = defaultEncoding;
957
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diff changeset
353
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diff changeset
354 OFString tmp;
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diff changeset
355 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good())
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diff changeset
356 {
63973b76a51f detection of encoding
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diff changeset
357 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str()));
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358
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diff changeset
359 if (characterSet.empty())
957
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diff changeset
360 {
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diff changeset
361 // Empty specific character set tag: Use the default encoding
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diff changeset
362 }
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diff changeset
363 else if (GetDicomEncoding(encoding, characterSet.c_str()))
1087
e07b90fb00eb more encodings
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diff changeset
364 {
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diff changeset
365 // The specific character set is supported by the Orthanc core
1087
e07b90fb00eb more encodings
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diff changeset
366 }
1090
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diff changeset
367 else
1087
e07b90fb00eb more encodings
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diff changeset
368 {
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diff changeset
369 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet
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370 << ", fallback to ASCII (remove all special characters)";
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diff changeset
371 encoding = Encoding_Ascii;
63973b76a51f detection of encoding
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diff changeset
372 }
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diff changeset
373 }
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diff changeset
374 else
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diff changeset
375 {
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376 // No specific character set tag: Use the default encoding
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diff changeset
377 }
957
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diff changeset
378
63973b76a51f detection of encoding
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diff changeset
379 return encoding;
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diff changeset
380 }
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diff changeset
381
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diff changeset
382
2125
b9bd52c72ba2 cleaning up
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diff changeset
383 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target,
b9bd52c72ba2 cleaning up
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diff changeset
384 DcmItem& dataset,
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diff changeset
385 unsigned int maxStringLength,
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diff changeset
386 Encoding defaultEncoding)
0
3959d33612cc initial commit
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parents:
diff changeset
387 {
1928
84c7eaeb5244 Configuration::GetDefaultEncoding
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diff changeset
388 Encoding encoding = DetectEncoding(dataset, defaultEncoding);
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diff changeset
389
0
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parents:
diff changeset
390 target.Clear();
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parents:
diff changeset
391 for (unsigned long i = 0; i < dataset.card(); i++)
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diff changeset
392 {
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diff changeset
393 DcmElement* element = dataset.getElement(i);
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394 if (element && element->isLeaf())
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395 {
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396 target.SetValue(element->getTag().getGTag(),
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397 element->getTag().getETag(),
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diff changeset
398 ConvertLeafElement(*element, DicomToJsonFlags_Default, maxStringLength, encoding));
0
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399 }
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parents:
diff changeset
400 }
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parents:
diff changeset
401 }
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parents:
diff changeset
402
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diff changeset
403
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parents: 957
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404 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag)
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parents: 957
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405 {
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406 return DicomTag(tag.getGTag(), tag.getETag());
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parents: 957
diff changeset
407 }
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parents: 957
diff changeset
408
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diff changeset
409
0
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410 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
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411 {
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412 return DicomTag(element.getGTag(), element.getETag());
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413 }
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parents:
diff changeset
414
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415
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416 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element,
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parents: 1735
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417 DicomToJsonFlags flags,
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418 unsigned int maxStringLength,
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419 Encoding encoding)
0
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420 {
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421 if (!element.isLeaf())
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422 {
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423 // This function is only applicable to leaf elements
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424 throw OrthancException(ErrorCode_BadParameterType);
0
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425 }
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426
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427 char *c = NULL;
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428 if (element.isaString() &&
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429 element.getString(c).good())
0
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430 {
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431 if (c == NULL) // This case corresponds to the empty string
0
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432 {
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433 return new DicomValue("", false);
0
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434 }
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435 else
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436 {
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437 std::string s(c);
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438 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding);
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parents: 1831
diff changeset
439
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440 if (maxStringLength != 0 &&
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441 utf8.size() > maxStringLength)
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442 {
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443 return new DicomValue; // Too long, create a NULL value
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444 }
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445 else
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446 {
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447 return new DicomValue(utf8, false);
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448 }
0
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449 }
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450 }
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451
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452
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453 if (element.getVR() == EVR_UN)
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454 {
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455 // Unknown value representation: Lookup in the dictionary. This
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456 // is notably the case for private tags registered with the
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457 // "Dictionary" configuration option.
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458 DictionaryLocker locker;
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459
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460 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(),
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461 element.getTag().getPrivateCreator());
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462 if (entry != NULL &&
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463 entry->getVR().isaString())
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464 {
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465 Uint8* data = NULL;
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466
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467 // At (*), we do not try and convert to UTF-8, as nothing says
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468 // the encoding of the private tag is the same as that of the
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469 // remaining of the DICOM dataset. Only go for ASCII strings.
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470
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471 if (element.getUint8Array(data) == EC_Normal &&
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472 Toolbox::IsAsciiString(data, element.getLength())) // (*)
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473 {
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diff changeset
474 if (data == NULL)
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parents: 2126
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475 {
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476 return new DicomValue("", false); // Empty string
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parents: 2126
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477 }
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parents: 2126
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478 else if (maxStringLength != 0 &&
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parents: 2126
diff changeset
479 element.getLength() > maxStringLength)
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480 {
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481 return new DicomValue; // Too long, create a NULL value
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482 }
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parents: 2126
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483 else
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parents: 2126
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484 {
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485 std::string s(reinterpret_cast<const char*>(data), element.getLength());
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parents: 2126
diff changeset
486 return new DicomValue(s, false);
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parents: 2126
diff changeset
487 }
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parents: 2126
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488 }
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parents: 2126
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489 }
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parents: 2126
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490 }
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parents: 2126
diff changeset
491
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diff changeset
492
0
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parents:
diff changeset
493 try
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parents:
diff changeset
494 {
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495 // http://support.dcmtk.org/docs/dcvr_8h-source.html
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diff changeset
496 switch (element.getVR())
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diff changeset
497 {
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parents:
diff changeset
498
3959d33612cc initial commit
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parents:
diff changeset
499 /**
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500 * Deal with binary data (including PixelData).
0
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501 **/
306
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502
302
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503 case EVR_OB: // other byte
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504 case EVR_OF: // other float
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505 case EVR_OW: // other word
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506 case EVR_UN: // unknown value representation
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507 case EVR_ox: // OB or OW depending on context
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508 case EVR_DS: // decimal string
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509 case EVR_IS: // integer string
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510 case EVR_AS: // age string
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511 case EVR_DA: // date string
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512 case EVR_DT: // date time string
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513 case EVR_TM: // time string
302
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diff changeset
514 case EVR_AE: // application entity title
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diff changeset
515 case EVR_CS: // code string
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516 case EVR_SH: // short string
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diff changeset
517 case EVR_LO: // long string
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diff changeset
518 case EVR_ST: // short text
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diff changeset
519 case EVR_LT: // long text
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diff changeset
520 case EVR_UT: // unlimited text
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diff changeset
521 case EVR_PN: // person name
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522 case EVR_UI: // unique identifier
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parents: 1792
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523 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
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parents: 1792
diff changeset
524 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
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parents: 1792
diff changeset
525 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
526 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull))
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parents: 1792
diff changeset
527 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
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528 Uint8* data = NULL;
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parents: 1792
diff changeset
529 if (element.getUint8Array(data) == EC_Normal)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
530 {
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
531 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
532 }
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
533 }
0
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parents:
diff changeset
534
1818
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parents: 1792
diff changeset
535 return new DicomValue;
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
536 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
537
1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
538 /**
2115
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parents: 2076
diff changeset
539 * Numeric types
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1065401501fb ParsedDicomFile::CreateFromJson
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parents: 1792
diff changeset
540 **/
0
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parents:
diff changeset
541
302
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diff changeset
542 case EVR_SL: // signed long
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parents: 291
diff changeset
543 {
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parents: 291
diff changeset
544 Sint32 f;
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parents: 291
diff changeset
545 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
546 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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parents: 291
diff changeset
547 else
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parents: 1736
diff changeset
548 return new DicomValue;
302
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parents: 291
diff changeset
549 }
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parents: 291
diff changeset
550
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parents: 291
diff changeset
551 case EVR_SS: // signed short
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parents: 291
diff changeset
552 {
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parents: 291
diff changeset
553 Sint16 f;
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parents: 291
diff changeset
554 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good())
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
555 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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parents: 291
diff changeset
556 else
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parents: 1736
diff changeset
557 return new DicomValue;
302
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diff changeset
558 }
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parents: 291
diff changeset
559
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parents: 291
diff changeset
560 case EVR_UL: // unsigned long
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parents: 291
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561 {
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parents: 291
diff changeset
562 Uint32 f;
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parents: 291
diff changeset
563 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
564 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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diff changeset
565 else
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parents: 1736
diff changeset
566 return new DicomValue;
302
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diff changeset
567 }
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parents: 291
diff changeset
568
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parents: 291
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569 case EVR_US: // unsigned short
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parents: 291
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570 {
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parents: 291
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571 Uint16 f;
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parents: 291
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572 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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573 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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diff changeset
574 else
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parents: 1736
diff changeset
575 return new DicomValue;
302
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diff changeset
576 }
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parents: 291
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577
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578 case EVR_FL: // float single-precision
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579 {
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580 Float32 f;
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diff changeset
581 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
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582 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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diff changeset
583 else
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parents: 1736
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584 return new DicomValue;
302
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parents: 291
diff changeset
585 }
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parents: 291
diff changeset
586
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parents: 291
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587 case EVR_FD: // float double-precision
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588 {
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589 Float64 f;
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parents: 291
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590 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good())
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
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591 return new DicomValue(boost::lexical_cast<std::string>(f), false);
302
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diff changeset
592 else
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parents: 1736
diff changeset
593 return new DicomValue;
1131
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parents: 1093
diff changeset
594 }
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parents: 1093
diff changeset
595
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
596
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
597 /**
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
598 * Attribute tag.
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
599 **/
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
600
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parents: 1093
diff changeset
601 case EVR_AT:
ac6bd50a8c83 fix issue 16
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parents: 1093
diff changeset
602 {
1147
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parents: 1131
diff changeset
603 DcmTagKey tag;
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
604 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good())
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
605 {
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
606 DicomTag t(tag.getGroup(), tag.getElement());
1737
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parents: 1736
diff changeset
607 return new DicomValue(t.Format(), false);
1147
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
608 }
1131
ac6bd50a8c83 fix issue 16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1093
diff changeset
609 else
1147
ae9a83a6fa47 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1131
diff changeset
610 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
611 return new DicomValue;
1147
ae9a83a6fa47 simplification
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parents: 1131
diff changeset
612 }
302
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parents: 291
diff changeset
613 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
614
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 /**
302
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diff changeset
617 * Sequence types, should never occur at this point because of
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parents: 291
diff changeset
618 * "element.isLeaf()".
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parents: 291
diff changeset
619 **/
0
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parents:
diff changeset
620
302
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diff changeset
621 case EVR_SQ: // sequence of items
1737
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parents: 1736
diff changeset
622 return new DicomValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
623
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parents:
diff changeset
624
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diff changeset
625 /**
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parents: 291
diff changeset
626 * Internal to DCMTK.
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diff changeset
627 **/
0
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parents:
diff changeset
628
302
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diff changeset
629 case EVR_xs: // SS or US depending on context
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parents: 291
diff changeset
630 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
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parents: 291
diff changeset
631 case EVR_na: // na="not applicable", for data which has no VR
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parents: 291
diff changeset
632 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
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parents: 291
diff changeset
633 case EVR_item: // used internally for items
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
634 case EVR_metainfo: // used internally for meta info datasets
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parents: 291
diff changeset
635 case EVR_dataset: // used internally for datasets
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parents: 291
diff changeset
636 case EVR_fileFormat: // used internally for DICOM files
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parents: 291
diff changeset
637 case EVR_dicomDir: // used internally for DICOMDIR objects
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parents: 291
diff changeset
638 case EVR_dirRecord: // used internally for DICOMDIR records
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parents: 291
diff changeset
639 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
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parents: 291
diff changeset
640 case EVR_pixelItem: // used internally for pixel items in a compressed image
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parents: 291
diff changeset
641 case EVR_PixelData: // used internally for uncompressed pixeld data
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parents: 291
diff changeset
642 case EVR_OverlayData: // used internally for overlay data
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parents: 1736
diff changeset
643 return new DicomValue;
0
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parents:
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644
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parents:
diff changeset
645
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diff changeset
646 /**
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parents: 291
diff changeset
647 * Default case.
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parents: 291
diff changeset
648 **/
0
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parents:
diff changeset
649
302
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diff changeset
650 default:
1737
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parents: 1736
diff changeset
651 return new DicomValue;
0
3959d33612cc initial commit
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parents:
diff changeset
652 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
653 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
654 catch (boost::bad_lexical_cast)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
655 {
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ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1736
diff changeset
656 return new DicomValue;
0
3959d33612cc initial commit
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parents:
diff changeset
657 }
306
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parents: 305
diff changeset
658 catch (std::bad_cast)
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parents: 305
diff changeset
659 {
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parents: 1736
diff changeset
660 return new DicomValue;
306
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661 }
0
3959d33612cc initial commit
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parents:
diff changeset
662 }
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parents:
diff changeset
663
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
664
1687
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parents: 1686
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665 static Json::Value& PrepareNode(Json::Value& parent,
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parents: 1686
diff changeset
666 DcmElement& element,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
667 DicomToJsonFormat format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
668 {
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
669 assert(parent.type() == Json::objectValue);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
670
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
671 DicomTag tag(FromDcmtkBridge::GetTag(element));
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
672 const std::string formattedTag = tag.Format();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
673
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
674 if (format == DicomToJsonFormat_Short)
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
675 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
676 parent[formattedTag] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
677 return parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
678 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
679
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
680 // This code gives access to the name of the private tags
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
681 std::string tagName = FromDcmtkBridge::GetTagName(element);
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
682
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
683 switch (format)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
684 {
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
685 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
686 parent[tagName] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
687 return parent[tagName];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
689 case DicomToJsonFormat_Full:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
690 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
691 parent[formattedTag] = Json::objectValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
692 Json::Value& node = parent[formattedTag];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
693
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
694 if (element.isLeaf())
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
695 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
696 node["Name"] = tagName;
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
697
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
698 if (element.getTag().getPrivateCreator() != NULL)
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
699 {
2076
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2074
diff changeset
700 node["PrivateCreator"] = element.getTag().getPrivateCreator();
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
701 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
702
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
703 return node;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
704 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
705 else
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
706 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
707 node["Name"] = tagName;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
708 node["Type"] = "Sequence";
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
709 node["Value"] = Json::nullValue;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
710 return node["Value"];
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
711 }
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
712 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
713
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
714 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
715 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
716 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
717 }
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
718
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
719
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
720 static void LeafValueToJson(Json::Value& target,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
721 const DicomValue& value,
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
722 DicomToJsonFormat format,
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
723 DicomToJsonFlags flags,
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
724 unsigned int maxStringLength)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
725 {
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
726 Json::Value* targetValue = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
727 Json::Value* targetType = NULL;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
728
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
729 switch (format)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
730 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
731 case DicomToJsonFormat_Short:
1860
c7d70f659190 DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1854
diff changeset
732 case DicomToJsonFormat_Human:
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
733 {
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
734 assert(target.type() == Json::nullValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
735 targetValue = &target;
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
736 break;
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
737 }
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
738
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
739 case DicomToJsonFormat_Full:
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
740 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
741 assert(target.type() == Json::objectValue);
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
742 target["Value"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
743 target["Type"] = Json::nullValue;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
744 targetType = &target["Type"];
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
745 targetValue = &target["Value"];
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
746 break;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
747 }
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
748
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
749 default:
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
750 throw OrthancException(ErrorCode_ParameterOutOfRange);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
751 }
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
752
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
753 assert(targetValue != NULL);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
754 assert(targetValue->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
755 assert(targetType == NULL || targetType->type() == Json::nullValue);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
756
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
757 if (value.IsNull())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
758 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
759 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
760 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
761 *targetType = "Null";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
762 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
763 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
764 else if (value.IsBinary())
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
765 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
766 if (flags & DicomToJsonFlags_ConvertBinaryToAscii)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
767 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
768 *targetValue = Toolbox::ConvertToAscii(value.GetContent());
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
769 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
770 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
771 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
772 std::string s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
773 value.FormatDataUriScheme(s);
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
774 *targetValue = s;
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
775 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
776
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
777 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
778 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
779 *targetType = "Binary";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
780 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
781 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
782 else if (maxStringLength == 0 ||
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
783 value.GetContent().size() <= maxStringLength)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
784 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
785 *targetValue = value.GetContent();
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
786
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
787 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
788 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
789 *targetType = "String";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
790 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
791 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
792 else
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
793 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
794 if (targetType != NULL)
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
795 {
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
796 *targetType = "TooLong";
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
797 }
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
798 }
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
799 }
35
f6d12037f886 full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
800
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
801
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
802 void FromDcmtkBridge::ElementToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
803 DcmElement& element,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
804 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
805 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
806 unsigned int maxStringLength,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
807 Encoding encoding)
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
808 {
1691
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
809 if (parent.type() == Json::nullValue)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
810 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
811 parent = Json::objectValue;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
812 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
813
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1690
diff changeset
814 assert(parent.type() == Json::objectValue);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
815 Json::Value& target = PrepareNode(parent, element, format);
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
816
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
817 if (element.isLeaf())
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
818 {
2129
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
819 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values
0c09d1af22f3 "/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
820 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, flags, 0, encoding));
1738
15a788a63846 DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
821 LeafValueToJson(target, *v, format, flags, maxStringLength);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
822 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
823 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
824 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
825 assert(target.type() == Json::nullValue);
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
826 target = Json::arrayValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
827
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
828 // "All subclasses of DcmElement except for DcmSequenceOfItems
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
829 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
830 // etc. are not." The following dynamic_cast is thus OK.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
831 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
832
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
833 for (unsigned long i = 0; i < sequence.card(); i++)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
834 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
835 DcmItem* child = sequence.getItem(i);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
836 Json::Value& v = target.append(Json::objectValue);
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
837 DatasetToJson(v, *child, format, flags, maxStringLength, encoding);
1687
4d80fc990dae refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
838 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
839 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
840 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
841
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
842
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
843 void FromDcmtkBridge::DatasetToJson(Json::Value& parent,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
844 DcmItem& item,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
845 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
846 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
847 unsigned int maxStringLength,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
848 Encoding encoding)
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
849 {
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
850 assert(parent.type() == Json::objectValue);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
851
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
852 for (unsigned long i = 0; i < item.card(); i++)
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
853 {
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
854 DcmElement* element = item.getElement(i);
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
855 if (element == NULL)
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
856 {
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
857 throw OrthancException(ErrorCode_InternalError);
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
858 }
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
859
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
860 DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
861
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
862 /*element->getTag().isPrivate()*/
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
863 if (tag.IsPrivate() &&
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
864 !(flags & DicomToJsonFlags_IncludePrivateTags))
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
865 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
866 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
867 }
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
868
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
869 if (!(flags & DicomToJsonFlags_IncludeUnknownTags))
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
870 {
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
871 DictionaryLocker locker;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
872 if (locker->findEntry(element->getTag(), NULL) == NULL)
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
873 {
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
874 continue;
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
875 }
1735
a001f6226c7c primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
876 }
1736
b953c6eef28d ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1735
diff changeset
877
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
878 DcmEVR evr = element->getTag().getEVR();
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
879 if (evr == EVR_OB ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
880 evr == EVR_OF ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
881 evr == EVR_OW ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
882 evr == EVR_UN ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
883 evr == EVR_ox)
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
884 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
885 // This is a binary tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
886 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
887 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary)))
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
888 {
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
889 continue;
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
890 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
891 }
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
892
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
893 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding);
1686
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
894 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
895 }
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
896
14a32b2fa63e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1657
diff changeset
897
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
898 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
899 DcmDataset& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
900 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
901 DicomToJsonFlags flags,
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
902 unsigned int maxStringLength,
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
903 Encoding defaultEncoding)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
904 {
2131
bb199bccdc45 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2129
diff changeset
905 Encoding encoding = DetectEncoding(dataset, defaultEncoding);
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
906
1688
27d70e9ee2e4 DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1687
diff changeset
907 target = Json::objectValue;
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
908 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
909 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
910
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
911
2126
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
912 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
913 DcmMetaInfo& dataset,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
914 DicomToJsonFormat format,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
915 DicomToJsonFlags flags,
03b065778fc3 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2125
diff changeset
916 unsigned int maxStringLength)
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
917 {
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
918 target = Json::objectValue;
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
919 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii);
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
920 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
921
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
922
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
923
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
924 static std::string GetTagNameInternal(DcmTag& tag)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
925 {
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
926 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
927 // Some patches for important tags because of different DICOM
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
928 // dictionaries between DCMTK versions
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
929 DicomTag tmp(tag.getGroup(), tag.getElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
930 std::string n = tmp.GetMainTagsName();
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
931 if (n.size() != 0)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
932 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
933 return n;
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
934 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
935 // End of patches
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
936 }
106
332fec038d52 patch for dcmtk dictionaries
jodogne
parents: 80
diff changeset
937
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
938 #if 0
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
939 // This version explicitly calls the dictionary
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
940 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
941 const DcmDictEntry* entry = dict.findEntry(tag, NULL);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
942
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
943 std::string s(DcmTag_ERROR_TagName);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
944 if (entry != NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
945 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
946 s = std::string(entry->getTagName());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
947 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
948
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
949 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
950 return s;
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
951 #else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
952 const char* name = tag.getTagName();
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
953 if (name == NULL)
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
954 {
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
955 return DcmTag_ERROR_TagName;
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
956 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
957 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
958 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
959 return std::string(name);
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
960 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
961 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
962 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
963
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
964
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
965 std::string FromDcmtkBridge::GetTagName(const DicomTag& t,
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
966 const std::string& privateCreator)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
967 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
968 DcmTag tag(t.GetGroup(), t.GetElement());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
969
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
970 if (!privateCreator.empty())
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
971 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
972 tag.setPrivateCreator(privateCreator.c_str());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
973 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
974
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
975 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
976 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
977
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
978
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
979 std::string FromDcmtkBridge::GetTagName(const DcmElement& element)
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
980 {
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
981 // Copy the tag to ensure const-correctness of DcmElement. Note
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
982 // that the private creator information is also copied.
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
983 DcmTag tag(element.getTag());
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
984
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
985 return GetTagNameInternal(tag);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
986 }
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
987
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
988
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
989
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
990 DicomTag FromDcmtkBridge::ParseTag(const char* name)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
991 {
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
992 if (strlen(name) == 9 &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
993 isxdigit(name[0]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
994 isxdigit(name[1]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
995 isxdigit(name[2]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
996 isxdigit(name[3]) &&
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 957
diff changeset
997 (name[4] == '-' || name[4] == ',') &&
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
998 isxdigit(name[5]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
999 isxdigit(name[6]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1000 isxdigit(name[7]) &&
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1001 isxdigit(name[8]))
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1002 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1003 uint16_t group = GetTagValue(name);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1004 uint16_t element = GetTagValue(name + 5);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1005 return DicomTag(group, element);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1006 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 303
diff changeset
1007
1861
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1008 if (strlen(name) == 8 &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1009 isxdigit(name[0]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1010 isxdigit(name[1]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1011 isxdigit(name[2]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1012 isxdigit(name[3]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1013 isxdigit(name[4]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1014 isxdigit(name[5]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1015 isxdigit(name[6]) &&
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1016 isxdigit(name[7]))
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1017 {
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1018 uint16_t group = GetTagValue(name);
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1019 uint16_t element = GetTagValue(name + 4);
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1020 return DicomTag(group, element);
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1021 }
a7bea843a7bc "OrthancPluginLookupDictionary()" to get information about some DICOM tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1860
diff changeset
1022
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1023 #if 0
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1024 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1025 const DcmDictEntry* entry = dict.findEntry(name);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1026
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1027 if (entry == NULL)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1028 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1029 dcmDataDict.unlock();
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1030 throw OrthancException(ErrorCode_UnknownDicomTag);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1031 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1032 else
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1033 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1034 DcmTagKey key = entry->getKey();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1035 DicomTag tag(key.getGroup(), key.getElement());
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1036 dcmDataDict.unlock();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1037 return tag;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1038 }
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1039 #else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1040 DcmTag tag;
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1041 if (DcmTag::findTagFromName(name, tag).good())
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1042 {
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1043 return DicomTag(tag.getGTag(), tag.getETag());
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1044 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1045 else
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1046 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
1047 throw OrthancException(ErrorCode_UnknownDicomTag);
305
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1048 }
86bb79522f19 name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1049 #endif
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1050 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1051
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1052
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1053 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag)
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1054 {
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1055 DcmTag tmp(tag.GetGroup(), tag.GetElement());
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1056 return tmp.isUnknownVR();
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1057 }
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1058
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
1059
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1060 void FromDcmtkBridge::ToJson(Json::Value& result,
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1061 const DicomMap& values,
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1062 bool simplify)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1063 {
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1064 if (result.type() != Json::objectValue)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1065 {
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
1066 throw OrthancException(ErrorCode_BadParameterType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1067 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1068
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1069 result.clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1070
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1071 for (DicomMap::Map::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 465
diff changeset
1072 it = values.map_.begin(); it != values.map_.end(); ++it)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1073 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1074 // TODO Inject PrivateCreator if some is available in the DicomMap?
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1075 const std::string tagName = GetTagName(it->first, "");
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1076
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1077 if (simplify)
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1078 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1079 if (it->second->IsNull())
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1080 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1081 result[tagName] = Json::nullValue;
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1082 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1083 else
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1084 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1085 // TODO IsBinary
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1086 result[tagName] = it->second->GetContent();
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1087 }
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1088 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1089 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1090 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1091 Json::Value value = Json::objectValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1092
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2076
diff changeset
1093 value["Name"] = tagName;
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1094
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1095 if (it->second->IsNull())
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1096 {
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1097 value["Type"] = "Null";
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1098 value["Value"] = Json::nullValue;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1099 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1100 else
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1101 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1102 // TODO IsBinary
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1103 value["Type"] = "String";
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
1104 value["Value"] = it->second->GetContent();
1368
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1105 }
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1106
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1107 result[it->first.Format()] = value;
b22ba8c5edbe query retrieve
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1360
diff changeset
1108 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1109 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1110 }
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1111
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1112
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1113 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level)
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1114 {
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1115 char uid[100];
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1116
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1117 switch (level)
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1118 {
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1119 case ResourceType_Patient:
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1120 // The "PatientID" field is of type LO (Long String), 64
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1121 // Bytes Maximum. An UUID is of length 36, thus it can be used
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 308
diff changeset
1122 // as a random PatientID.
2172
84d1d392a9ab GenerateUuid() not available in sandboxed environments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2152
diff changeset
1123 return SystemToolbox::GenerateUuid();
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
1124
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1125 case ResourceType_Instance:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1126 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1127
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1128 case ResourceType_Series:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1129 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1130
788
7ebe4bf87196 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 784
diff changeset
1131 case ResourceType_Study:
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1132 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1133
302
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1134 default:
238134081136 modification of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1135 throw OrthancException(ErrorCode_ParameterOutOfRange);
176
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1136 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1137 }
81f11fb357f2 uid generation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 136
diff changeset
1138
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1139 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer,
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1140 DcmDataset& dataSet)
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1141 {
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1142 // Determine the transfer syntax which shall be used to write the
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1143 // information to the file. We always switch to the Little Endian
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1144 // syntax, with explicit length.
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1145
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1146 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1147
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1148
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1149 /**
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1150 * Note that up to Orthanc 0.7.1 (inclusive), the
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1151 * "EXS_LittleEndianExplicit" was always used to save the DICOM
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1152 * dataset into memory. We now keep the original transfer syntax
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1153 * (if available).
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1154 **/
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1155 E_TransferSyntax xfer = dataSet.getOriginalXfer();
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1156 if (xfer == EXS_Unknown)
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1157 {
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1158 // No information about the original transfer syntax: This is
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1159 // most probably a DICOM dataset that was read from memory.
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1160 xfer = EXS_LittleEndianExplicit;
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1161 }
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1162
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1163 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1164
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1165 // Create the meta-header information
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
1166 DcmFileFormat ff(&dataSet);
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1167 ff.validateMetaInfo(xfer);
1316
1c8dfedefefe Fix anonymization generating non-portable DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1307
diff changeset
1168 ff.removeInvalidGroups();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1169
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1170 // Create a memory buffer with the proper size
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1171 {
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1172 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*)
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1173 buffer.resize(estimatedSize);
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1174 }
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1175
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1176 DcmOutputBufferStream ob(&buffer[0], buffer.size());
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1177
661
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1178 // Fill the memory buffer with the meta-header and the dataset
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1179 ff.transferInit();
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1180 OFCondition c = ff.write(ob, xfer, encodingType, NULL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1181 /*opt_groupLength*/ EGL_recalcGL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1182 /*opt_paddingType*/ EPD_withoutPadding);
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
1183 ff.transferEnd();
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1184
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1185 if (c.good())
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1186 {
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1187 // The DICOM file is successfully written, truncate the target
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1188 // buffer if its size was overestimated by (*)
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1189 ob.flush();
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1190
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1191 size_t effectiveSize = static_cast<size_t>(ob.tell());
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1192 if (effectiveSize < buffer.size())
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1193 {
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1194 buffer.resize(effectiveSize);
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1195 }
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1196
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1197 return true;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1198 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1199 else
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1200 {
1876
9b458e4484a1 truncation of serialized DICOM buffers if calcElementLength was overestimated
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1861
diff changeset
1201 // Error
291
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1202 buffer.clear();
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1203 return false;
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1204 }
4d7469f72a0b embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 285
diff changeset
1205 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1206
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1207
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1208 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag)
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1209 {
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1210 DcmTag t(tag.GetGroup(), tag.GetElement());
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1211 return Convert(t.getEVR());
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1212 }
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1213
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1214 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr)
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1215 {
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1216 switch (vr)
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1217 {
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1218 case EVR_AE:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1219 return ValueRepresentation_ApplicationEntity;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1220
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1221 case EVR_AS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1222 return ValueRepresentation_AgeString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1223
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1224 case EVR_AT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1225 return ValueRepresentation_AttributeTag;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1226
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1227 case EVR_CS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1228 return ValueRepresentation_CodeString;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1229
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1230 case EVR_DA:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1231 return ValueRepresentation_Date;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1232
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1233 case EVR_DS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1234 return ValueRepresentation_DecimalString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1235
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1236 case EVR_DT:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1237 return ValueRepresentation_DateTime;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1238
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1239 case EVR_FL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1240 return ValueRepresentation_FloatingPointSingle;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1241
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1242 case EVR_FD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1243 return ValueRepresentation_FloatingPointDouble;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1244
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1245 case EVR_IS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1246 return ValueRepresentation_IntegerString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1247
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1248 case EVR_LO:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1249 return ValueRepresentation_LongString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1250
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1251 case EVR_LT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1252 return ValueRepresentation_LongText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1253
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1254 case EVR_OB:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1255 return ValueRepresentation_OtherByte;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1256
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1257 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1258 /*case EVR_OD:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1259 return ValueRepresentation_OtherDouble;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1260
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1261 case EVR_OF:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1262 return ValueRepresentation_OtherFloat;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1263
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1264 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1265 /*case EVR_OL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1266 return ValueRepresentation_OtherLong;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1267
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1268 case EVR_OW:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1269 return ValueRepresentation_OtherWord;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1270
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1271 case EVR_PN:
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1272 return ValueRepresentation_PersonName;
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1273
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1274 case EVR_SH:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1275 return ValueRepresentation_ShortString;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1276
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1277 case EVR_SL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1278 return ValueRepresentation_SignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1279
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1280 case EVR_SQ:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1281 return ValueRepresentation_Sequence;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1282
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1283 case EVR_SS:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1284 return ValueRepresentation_SignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1285
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1286 case EVR_ST:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1287 return ValueRepresentation_ShortText;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1288
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1289 case EVR_TM:
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1290 return ValueRepresentation_Time;
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1291
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1292 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1293 /*case EVR_UC:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1294 return ValueRepresentation_UnlimitedCharacters;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1295
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1296 case EVR_UI:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1297 return ValueRepresentation_UniqueIdentifier;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1298
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1299 case EVR_UL:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1300 return ValueRepresentation_UnsignedLong;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1301
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1302 case EVR_UN:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1303 return ValueRepresentation_Unknown;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1304
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1305 // Not supported as of DCMTK 3.6.0
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1306 /*case EVR_UR:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1307 return ValueRepresentation_UniversalResource;*/
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1308
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1309 case EVR_US:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1310 return ValueRepresentation_UnsignedShort;
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1311
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1312 case EVR_UT:
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1313 return ValueRepresentation_UnlimitedText;
1792
b769623c806c safety check
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1765
diff changeset
1314
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1315 default:
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1998
diff changeset
1316 return ValueRepresentation_NotSupported;
1417
8e23f16a198d fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
1317 }
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1318 }
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1316
diff changeset
1319
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1320
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1321 static bool IsBinaryTag(const DcmTag& key)
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1322 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1323 return (key.isUnknownVR() ||
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1324 key.getEVR() == EVR_OB ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1325 key.getEVR() == EVR_OF ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1326 key.getEVR() == EVR_OW ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1327 key.getEVR() == EVR_UN ||
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1328 key.getEVR() == EVR_ox);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1329 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1330
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1331
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1332 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1333 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1334 DcmTag key(tag.GetGroup(), tag.GetElement());
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1335
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1336 if (tag.IsPrivate() ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1337 IsBinaryTag(key))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1338 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1339 return new DcmOtherByteOtherWord(key);
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1340 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1341
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1342 switch (key.getEVR())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1343 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1344 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1345
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1346 /**
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1347 * Binary types, handled above
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1348 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1349
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1350 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1351 case EVR_OF: // other float
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1352 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1353 case EVR_UN: // unknown value representation
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1354 case EVR_ox: // OB or OW depending on context
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1355 throw OrthancException(ErrorCode_InternalError);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1356
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1357
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1358 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1359 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1360 * http://support.dcmtk.org/docs/classDcmByteString.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1361 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1362
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1363 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1364 return new DcmAgeString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1365
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1366 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1367 return new DcmApplicationEntity(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1368
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1369 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1370 return new DcmCodeString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1371
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1372 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1373 return new DcmDate(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1374
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1375 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1376 return new DcmDateTime(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1377
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1378 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1379 return new DcmDecimalString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1380
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1381 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1382 return new DcmIntegerString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1383
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1384 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1385 return new DcmTime(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1386
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1387 case EVR_UI: // unique identifier
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1388 return new DcmUniqueIdentifier(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1389
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1390 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1391 return new DcmShortText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1392
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1393 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1394 return new DcmLongString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1395
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1396 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1397 return new DcmLongText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1398
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1399 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1400 return new DcmUnlimitedText(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1401
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1402 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1403 return new DcmShortString(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1404
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1405 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1406 return new DcmPersonName(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1407
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1408
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1409 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1410 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1411 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1412
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1413 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1414 return new DcmSignedLong(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1415
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1416 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1417 return new DcmSignedShort(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1418
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1419 case EVR_UL: // unsigned long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1420 return new DcmUnsignedLong(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1421
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1422 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1423 return new DcmUnsignedShort(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1424
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1425 case EVR_FL: // float single-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1426 return new DcmFloatingPointSingle(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1427
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1428 case EVR_FD: // float double-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1429 return new DcmFloatingPointDouble(key);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1430
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1431
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1432 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1433 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1434 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1435
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1436 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1437 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1438
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1439
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1440 /**
1739
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1441 * TODO
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1442 **/
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1443
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1444 case EVR_AT: // attribute tag
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1445 throw OrthancException(ErrorCode_NotImplemented);
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1446
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1447
df331354cea2 include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1738
diff changeset
1448 /**
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1449 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1450 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1451
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1452 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1453 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1454 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1455 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1456 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1457 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1458 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1459 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1460 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1461 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1462 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1463 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1464 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1465 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1466 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1467 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1468 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1469 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1470 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1471
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1472 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1473 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1474
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1475
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1476
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1477 void FromDcmtkBridge::FillElementWithString(DcmElement& element,
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1478 const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1479 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1480 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1481 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1482 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1483 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1484 const std::string* decoded = &utf8Value;
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1485
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1486 if (decodeDataUriScheme &&
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1487 boost::starts_with(utf8Value, "data:application/octet-stream;base64,"))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1488 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1489 std::string mime;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1490 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1491 {
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1492 throw OrthancException(ErrorCode_BadFileFormat);
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1493 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1976
diff changeset
1494
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1495 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1496 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1497 else if (dicomEncoding != Encoding_Utf8)
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1498 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1499 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1500 decoded = &binary;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1501 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1502
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1503 DcmTag key(tag.GetGroup(), tag.GetElement());
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1504
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1505 if (tag.IsPrivate() ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1506 IsBinaryTag(key))
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1507 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1508 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1509 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1510 return;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1511 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1512 else
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1513 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1514 throw OrthancException(ErrorCode_InternalError);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1515 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1516 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1517
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1518 bool ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1519
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1520 try
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1521 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1522 switch (key.getEVR())
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1523 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1524 // http://support.dcmtk.org/docs/dcvr_8h-source.html
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1525
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1526 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1527 * TODO.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1528 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1529
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1530 case EVR_OB: // other byte
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1531 case EVR_OF: // other float
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1532 case EVR_OW: // other word
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1533 case EVR_AT: // attribute tag
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1534 throw OrthancException(ErrorCode_NotImplemented);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1535
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1536 case EVR_UN: // unknown value representation
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1537 throw OrthancException(ErrorCode_ParameterOutOfRange);
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1538
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1539
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1540 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1541 * String types.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1542 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1543
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1544 case EVR_DS: // decimal string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1545 case EVR_IS: // integer string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1546 case EVR_AS: // age string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1547 case EVR_DA: // date string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1548 case EVR_DT: // date time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1549 case EVR_TM: // time string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1550 case EVR_AE: // application entity title
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1551 case EVR_CS: // code string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1552 case EVR_SH: // short string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1553 case EVR_LO: // long string
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1554 case EVR_ST: // short text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1555 case EVR_LT: // long text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1556 case EVR_UT: // unlimited text
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1557 case EVR_PN: // person name
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1558 case EVR_UI: // unique identifier
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1559 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1560 ok = element.putString(decoded->c_str()).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1561 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1562 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1563
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1564
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1565 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1566 * Numerical types
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1567 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1568
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1569 case EVR_SL: // signed long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1570 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1571 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1572 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1573 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1574
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1575 case EVR_SS: // signed short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1576 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1577 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1578 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1579 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1580
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1581 case EVR_UL: // unsigned long
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1582 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1583 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1584 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1585 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1586
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1587 case EVR_US: // unsigned short
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1588 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1589 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1590 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1591 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1592
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1593 case EVR_FL: // float single-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1594 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1595 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1596 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1597 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1598
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1599 case EVR_FD: // float double-precision
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1600 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1601 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1602 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1603 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1604
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1605
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1606 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1607 * Sequence types, should never occur at this point.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1608 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1609
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1610 case EVR_SQ: // sequence of items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1611 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1612 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1613 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1614 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1615
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1616
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1617 /**
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1618 * Internal to DCMTK.
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1619 **/
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1620
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1621 case EVR_ox: // OB or OW depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1622 case EVR_xs: // SS or US depending on context
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1623 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1624 case EVR_na: // na="not applicable", for data which has no VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1625 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1626 case EVR_item: // used internally for items
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1627 case EVR_metainfo: // used internally for meta info datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1628 case EVR_dataset: // used internally for datasets
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1629 case EVR_fileFormat: // used internally for DICOM files
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1630 case EVR_dicomDir: // used internally for DICOMDIR objects
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1631 case EVR_dirRecord: // used internally for DICOMDIR records
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1632 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1633 case EVR_pixelItem: // used internally for pixel items in a compressed image
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1634 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1635 case EVR_PixelData: // used internally for uncompressed pixeld data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1636 case EVR_OverlayData: // used internally for overlay data
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1637 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1638 default:
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1639 break;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1640 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1641 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1642 catch (boost::bad_lexical_cast&)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1643 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1644 ok = false;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1645 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1646
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1647 if (!ok)
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1648 {
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1649 LOG(ERROR) << "While creating a DICOM instance, tag (" << tag.Format()
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1650 << ") has out-of-range value: \"" << *decoded << "\"";
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1651 throw OrthancException(ErrorCode_BadFileFormat);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1652 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1653 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1654
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1655
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1656 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1691
diff changeset
1657 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1658 bool decodeDataUriScheme,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
1659 Encoding dicomEncoding)
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1660 {
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1661 std::auto_ptr<DcmElement> element;
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1662
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1663 switch (value.type())
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1664 {
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1665 case Json::stringValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1666 element.reset(CreateElementForTag(tag));
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1667 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding);
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1668 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1669
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1670 case Json::nullValue:
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1671 element.reset(CreateElementForTag(tag));
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1672 FillElementWithString(*element, tag, "", decodeDataUriScheme, dicomEncoding);
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1673 break;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1674
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1675 case Json::arrayValue:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1676 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1677 DcmTag key(tag.GetGroup(), tag.GetElement());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1678 if (key.getEVR() != EVR_SQ)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1679 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1680 throw OrthancException(ErrorCode_BadParameterType);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1681 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1682
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1683 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key, value.size());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1684 element.reset(sequence);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1685
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1686 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1687 {
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1688 std::auto_ptr<DcmItem> item(new DcmItem);
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1689
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1690 Json::Value::Members members = value[i].getMemberNames();
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1691 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++)
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1692 {
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1792
diff changeset
1693 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding));
1690
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1694 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1695
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1696 sequence->append(item.release());
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1697 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1698
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1699 break;
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1700 }
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1701
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1702 default:
ae09132e4237 FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
1703 throw OrthancException(ErrorCode_BadParameterType);
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1704 }
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1705
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1706 return element.release();
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1688
diff changeset
1707 }
1765
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1708
57b9e6890482 New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
1709
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1710 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1711 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1712 DcmElement *element = NULL;
1927
b60f27664b8f simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
1713 if (!dataset.findAndGetElement(DCM_PixelData, element).good())
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1714 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1715 throw OrthancException(ErrorCode_BadFileFormat);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1716 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1717
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1718 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1719 DcmPixelSequence* pixelSequence = NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1720 if (!pixelData.getEncapsulatedRepresentation
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1721 (dataset.getOriginalXfer(), NULL, pixelSequence).good())
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1722 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1723 return NULL;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1724 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1725 else
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1726 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1727 return pixelSequence;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1728 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1729 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1730
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1731
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1732 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1733 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1734 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1735 if (json.type() != Json::objectValue)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1736 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1737 throw OrthancException(ErrorCode_BadParameterType);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1738 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1739
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1740 Encoding encoding = defaultEncoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1741
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1742 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1743
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1744 // Look for SpecificCharacterSet (0008,0005) in the JSON file
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1745 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1746 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1747 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1748 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1749 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1750 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1751 if (value.type() != Json::stringValue ||
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1752 (value.asString().length() != 0 &&
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1753 !GetDicomEncoding(encoding, value.asCString())))
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1754 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1755 LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1756 throw OrthancException(ErrorCode_BadRequest);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1757 }
2216
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1758
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1759 if (value.asString().length() == 0)
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1760 {
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1761 return defaultEncoding;
9a8fab016145 sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2209
diff changeset
1762 }
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1763 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1764 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1765
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1766 return encoding;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1767 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1768
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1769
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1770 static void SetString(DcmDataset& target,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1771 const DcmTag& tag,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1772 const std::string& value)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1773 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1774 if (!target.putAndInsertString(tag, value.c_str()).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1775 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1776 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1777 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1778 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1779
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1780
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1781 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1782 bool generateIdentifiers,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1783 bool decodeDataUriScheme,
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1784 Encoding defaultEncoding)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1785 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1786 std::auto_ptr<DcmDataset> result(new DcmDataset);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1787 Encoding encoding = ExtractEncoding(json, defaultEncoding);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1788
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1789 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1790
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1791 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1792
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1793 bool hasPatientId = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1794 bool hasStudyInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1795 bool hasSeriesInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1796 bool hasSopInstanceUid = false;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1797
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1798 for (size_t i = 0; i < tags.size(); i++)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1799 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1800 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1801 const Json::Value& value = json[tags[i]];
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1802
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1803 if (tag == DICOM_TAG_PATIENT_ID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1804 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1805 hasPatientId = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1806 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1807 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1808 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1809 hasStudyInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1810 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1811 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1812 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1813 hasSeriesInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1814 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1815 else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1816 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1817 hasSopInstanceUid = true;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1818 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1819
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1820 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1821 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1822 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1823 const DcmTagKey& tag = element->getTag();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1824
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1825 result->findAndDeleteElement(tag);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1826
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1827 DcmElement* tmp = element.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1828 if (!result->insert(tmp, false, false).good())
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1829 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1830 delete tmp;
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1831 throw OrthancException(ErrorCode_InternalError);
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1832 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1833 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1834 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1835
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1836 if (!hasPatientId &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1837 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1838 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1839 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1840 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1841
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1842 if (!hasStudyInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1843 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1844 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1845 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1846 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1847
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1848 if (!hasSeriesInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1849 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1850 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1851 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1852 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1853
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1854 if (!hasSopInstanceUid &&
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1855 generateIdentifiers)
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1856 {
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1857 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance));
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1858 }
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1859
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1860 return result.release();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1930
diff changeset
1861 }
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1862
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1863
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1864 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer,
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1865 size_t size)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1866 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1867 DcmInputBufferStream is;
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1868 if (size > 0)
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1869 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1870 is.setBuffer(buffer, size);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1871 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1872 is.setEos();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1873
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1874 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1875
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1876 result->transferInit();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1877 if (!result->read(is).good())
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1878 {
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1879 throw OrthancException(ErrorCode_BadFileFormat);
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1880 }
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1881
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1882 result->loadAllDataIntoMemory();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1883 result->transferEnd();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1884
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1885 return result.release();
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1886 }
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1887
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1888
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1889 void FromDcmtkBridge::FromJson(DicomMap& target,
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1890 const Json::Value& source)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1891 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1892 if (source.type() != Json::objectValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1893 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1894 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1895 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1896
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1897 target.Clear();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1898
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1899 Json::Value::Members members = source.getMemberNames();
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1900
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1901 for (size_t i = 0; i < members.size(); i++)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1902 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1903 const Json::Value& value = source[members[i]];
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1904
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1905 if (value.type() != Json::stringValue)
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1906 {
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1907 throw OrthancException(ErrorCode_BadFileFormat);
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1908 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1909
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
1910 target.SetValue(ParseTag(members[i]), value.asString(), false);
1998
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1911 }
9b61701c35f2 New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1912 }
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1913
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1914
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1915 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset,
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1916 Encoding source,
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1917 Encoding target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1918 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1919 // Recursive exploration of a dataset to change the encoding of
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1920 // each string-like element
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1921
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1922 if (source == target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1923 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1924 return;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1925 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1926
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1927 for (unsigned long i = 0; i < dataset.card(); i++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1928 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1929 DcmElement* element = dataset.getElement(i);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1930 if (element)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1931 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1932 if (element->isLeaf())
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1933 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1934 char *c = NULL;
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1935 if (element->isaString() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1936 element->getString(c).good() &&
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1937 c != NULL)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1938 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1939 std::string a = Toolbox::ConvertToUtf8(c, source);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1940 std::string b = Toolbox::ConvertFromUtf8(a, target);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1941 element->putString(b.c_str());
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1942 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1943 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1944 else
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1945 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1946 // "All subclasses of DcmElement except for DcmSequenceOfItems
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1947 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1948 // etc. are not." The following dynamic_cast is thus OK.
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1949 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1950
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1951 for (unsigned long j = 0; j < sequence.card(); j++)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1952 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1953 ChangeStringEncoding(*sequence.getItem(j), source, target);
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1954 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1955 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1956 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1957 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2172
diff changeset
1958 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1959
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1960
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1961 bool FromDcmtkBridge::LookupTransferSyntax(std::string& result,
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1962 DcmFileFormat& dicom)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1963 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1964 const char* value = NULL;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1965
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1966 if (dicom.getMetaInfo() != NULL &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1967 dicom.getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1968 value != NULL)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1969 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1970 result.assign(value);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1971 return true;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1972 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1973 else
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1974 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1975 return false;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1976 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1977 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1978 }