orthanc: OrthancServer/FromDcmtkBridge.cpp annotate

annotate OrthancServer/FromDcmtkBridge.cpp @ 784:efd0215736d9

start of anonymization refactoring

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Fri, 02 May 2014 15:06:31 +0200
parents	2d0a347e8cfc
children	7ebe4bf87196

rev	line source
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	2 * Orthanc - A Lightweight, RESTful DICOM Store
689 2d0a347e8cfc switch to 2014 Sebastien Jodogne <s.jodogne@gmail.com> parents: 682 diff changeset	3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	4 * Belgium
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	5 *
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 * This program is free software: you can redistribute it and/or
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * modify it under the terms of the GNU General Public License as
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	8 * published by the Free Software Foundation, either version 3 of the
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	9 * License, or (at your option) any later version.
136 fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	10 *
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	11 * In addition, as a special exception, the copyright holders of this
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	12 * program give permission to link the code of its release with the
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	14 * that use the same license as the "OpenSSL" library), and distribute
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	15 * the linked executables. You must obey the GNU General Public License
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	16 * in all respects for all of the code used other than "OpenSSL". If you
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	17 * modify file(s) with this exception, you may extend this exception to
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	18 * your version of the file(s), but you are not obligated to do so. If
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	19 * you do not wish to do so, delete this exception statement from your
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	20 * version. If you delete this exception statement from all source files
fe180eae201d openssl exception Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	21 * in the program, then also delete it here.
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22 *
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	23 * This program is distributed in the hope that it will be useful, but
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	24 * WITHOUT ANY WARRANTY; without even the implied warranty of
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	26 * General Public License for more details.
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	27 *
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	28 * You should have received a copy of the GNU General Public License
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	30 **/
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	31
448 9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	32
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	33
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	34 /*=========================================================================
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	35
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	36 This file is based on portions of the following project:
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	37
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	38 Program: GDCM (Grassroots DICOM). A DICOM library
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	39 Module: http://gdcm.sourceforge.net/Copyright.html
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	40
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	41 Copyright (c) 2006-2011 Mathieu Malaterre
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	42 Copyright (c) 1993-2005 CREATIS
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	43 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	44 All rights reserved.
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	45
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	46 Redistribution and use in source and binary forms, with or without
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	47 modification, are permitted provided that the following conditions are met:
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	48
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	49 * Redistributions of source code must retain the above copyright notice,
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	50 this list of conditions and the following disclaimer.
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	51
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	52 * Redistributions in binary form must reproduce the above copyright notice,
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	53 this list of conditions and the following disclaimer in the documentation
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	54 and/or other materials provided with the distribution.
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	55
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	56 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	57 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	58 endorse or promote products derived from this software without specific
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	59 prior written permission.
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	60
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	61 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	62 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	63 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	64 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	65 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	66 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	67 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	68 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	69 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	70 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	71
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	72 =========================================================================*/
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	73
9d830dcc7730 missing copyright information Sebastien Jodogne <s.jodogne@gmail.com> parents: 419 diff changeset	74
71 aa65ced5f0f0 fix for visual studio jodogne parents: 62 diff changeset	75 #ifndef NOMINMAX
aa65ced5f0f0 fix for visual studio jodogne parents: 62 diff changeset	76 #define NOMINMAX
aa65ced5f0f0 fix for visual studio jodogne parents: 62 diff changeset	77 #endif
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	78
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	79 #include "FromDcmtkBridge.h"
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	80
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	81 #include "ToDcmtkBridge.h"
107 3b45473c0a73 replace boost::locale with iconv for debian Sebastien Jodogne <s.jodogne@gmail.com> parents: 106 diff changeset	82 #include "../Core/Toolbox.h"
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	83 #include "../Core/OrthancException.h"
454 6f47a4262618 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 448 diff changeset	84 #include "../Core/FileFormats/PngWriter.h"
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	85 #include "../Core/Uuid.h"
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	86 #include "../Core/DicomFormat/DicomString.h"
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	87 #include "../Core/DicomFormat/DicomNullValue.h"
79 297bad4e1019 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 73 diff changeset	88 #include "../Core/DicomFormat/DicomIntegerPixelAccessor.h"
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	89
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	90 #include <list>
71 aa65ced5f0f0 fix for visual studio jodogne parents: 62 diff changeset	91 #include <limits>
aa65ced5f0f0 fix for visual studio jodogne parents: 62 diff changeset	92
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	93 #include <boost/lexical_cast.hpp>
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	94
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	95 #include <dcmtk/dcmdata/dcchrstr.h>
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	96 #include <dcmtk/dcmdata/dcdicent.h>
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	97 #include <dcmtk/dcmdata/dcdict.h>
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	98 #include <dcmtk/dcmdata/dcfilefo.h>
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	99 #include <dcmtk/dcmdata/dcistrmb.h>
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	100 #include <dcmtk/dcmdata/dcuid.h>
661 d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	101 #include <dcmtk/dcmdata/dcmetinf.h>
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	102
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	103 #include <dcmtk/dcmdata/dcvrae.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	104 #include <dcmtk/dcmdata/dcvras.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	105 #include <dcmtk/dcmdata/dcvrcs.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	106 #include <dcmtk/dcmdata/dcvrda.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	107 #include <dcmtk/dcmdata/dcvrds.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	108 #include <dcmtk/dcmdata/dcvrdt.h>
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	109 #include <dcmtk/dcmdata/dcvrfd.h>
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	110 #include <dcmtk/dcmdata/dcvrfl.h>
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	111 #include <dcmtk/dcmdata/dcvris.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	112 #include <dcmtk/dcmdata/dcvrlo.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	113 #include <dcmtk/dcmdata/dcvrlt.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	114 #include <dcmtk/dcmdata/dcvrpn.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	115 #include <dcmtk/dcmdata/dcvrsh.h>
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	116 #include <dcmtk/dcmdata/dcvrsl.h>
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	117 #include <dcmtk/dcmdata/dcvrss.h>
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	118 #include <dcmtk/dcmdata/dcvrst.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	119 #include <dcmtk/dcmdata/dcvrtm.h>
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	120 #include <dcmtk/dcmdata/dcvrui.h>
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	121 #include <dcmtk/dcmdata/dcvrul.h>
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	122 #include <dcmtk/dcmdata/dcvrus.h>
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	123 #include <dcmtk/dcmdata/dcvrut.h>
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	124 #include <dcmtk/dcmdata/dcpixel.h>
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	125 #include <dcmtk/dcmdata/dcpixseq.h>
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	126 #include <dcmtk/dcmdata/dcpxitem.h>
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	127
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	128
2 67a6978503b7 fixing Windows build Jodogne@Laptop parents: 0 diff changeset	129 #include <boost/math/special_functions/round.hpp>
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	130 #include <glog/logging.h>
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	131 #include <dcmtk/dcmdata/dcostrmb.h>
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	132
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	133
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	134 static const char* CONTENT_TYPE_OCTET_STREAM = "application/octet-stream";
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	135
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	136
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	137
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	138 namespace Orthanc
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	139 {
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	140 void ParsedDicomFile::Setup(const char* buffer, size_t size)
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	141 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	142 DcmInputBufferStream is;
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	143 if (size > 0)
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	144 {
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	145 is.setBuffer(buffer, size);
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	146 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	147 is.setEos();
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	148
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	149 file_.reset(new DcmFileFormat);
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	150 file_->transferInit();
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	151 if (!file_->read(is).good())
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	152 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	153 throw OrthancException(ErrorCode_BadFileFormat);
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	154 }
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	155 file_->loadAllDataIntoMemory();
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	156 file_->transferEnd();
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	157 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	158
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	159
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	160 static void SendPathValueForDictionary(RestApiOutput& output,
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	161 DcmItem& dicom)
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	162 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	163 Json::Value v = Json::arrayValue;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	164
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	165 for (unsigned long i = 0; i < dicom.card(); i++)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	166 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	167 DcmElement* element = dicom.getElement(i);
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	168 if (element)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	169 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	170 char buf[16];
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	171 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag());
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	172 v.append(buf);
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	173 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	174 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	175
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	176 output.AnswerJson(v);
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	177 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	178
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	179 static inline uint16_t GetCharValue(char c)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	180 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	181 if (c >= '0' && c <= '9')
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	182 return c - '0';
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	183 else if (c >= 'a' && c <= 'f')
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	184 return c - 'a' + 10;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	185 else if (c >= 'A' && c <= 'F')
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	186 return c - 'A' + 10;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	187 else
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	188 return 0;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	189 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	190
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	191 static inline uint16_t GetTagValue(const char* c)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	192 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	193 return ((GetCharValue(c[0]) << 12) +
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	194 (GetCharValue(c[1]) << 8) +
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	195 (GetCharValue(c[2]) << 4) +
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	196 GetCharValue(c[3]));
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	197 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	198
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	199 static void ParseTagAndGroup(DcmTagKey& key,
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	200 const std::string& tag)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	201 {
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	202 DicomTag t = FromDcmtkBridge::ParseTag(tag);
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	203 key = DcmTagKey(t.GetGroup(), t.GetElement());
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	204 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	205
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	206
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	207 static void SendSequence(RestApiOutput& output,
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	208 DcmSequenceOfItems& sequence)
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	209 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	210 // This element is a sequence
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	211 Json::Value v = Json::arrayValue;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	212
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	213 for (unsigned long i = 0; i < sequence.card(); i++)
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	214 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	215 v.append(boost::lexical_cast<std::string>(i));
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	216 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	217
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	218 output.AnswerJson(v);
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	219 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	220
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	221
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	222 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData,
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	223 E_TransferSyntax transferSyntax)
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	224 {
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	225 DcmPixelSequence* pixelSequence = NULL;
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	226 if (pixelData.getEncapsulatedRepresentation
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	227 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	228 {
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	229 return pixelSequence->card();
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	230 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	231 else
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	232 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	233 return 1;
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	234 }
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	235 }
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	236
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	237
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	238 static void AnswerDicomField(RestApiOutput& output,
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	239 DcmElement& element,
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	240 E_TransferSyntax transferSyntax)
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	241 {
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	242 // This element is nor a sequence, neither a pixel-data
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	243 std::string buffer;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	244 buffer.resize(65536);
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	245 Uint32 length = element.getLength(transferSyntax);
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	246 Uint32 offset = 0;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	247
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	248 output.GetLowLevelOutput().SendOkHeader(CONTENT_TYPE_OCTET_STREAM, true, length, NULL);
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	249
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	250 while (offset < length)
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	251 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	252 Uint32 nbytes;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	253 if (length - offset < buffer.size())
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	254 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	255 nbytes = length - offset;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	256 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	257 else
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	258 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	259 nbytes = buffer.size();
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	260 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	261
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	262 OFCondition cond = element.getPartialValue(&buffer[0], offset, nbytes);
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	263
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	264 if (cond.good())
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	265 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	266 output.GetLowLevelOutput().Send(&buffer[0], nbytes);
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	267 offset += nbytes;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	268 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	269 else
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	270 {
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	271 LOG(ERROR) << "Error while sending a DICOM field: " << cond.text();
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	272 return;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	273 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	274 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	275
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	276 output.MarkLowLevelOutputDone();
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	277 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	278
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	279
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	280 static bool AnswerPixelData(RestApiOutput& output,
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	281 DcmItem& dicom,
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	282 E_TransferSyntax transferSyntax,
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	283 const std::string* blockUri)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	284 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	285 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(),
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	286 DICOM_TAG_PIXEL_DATA.GetElement());
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	287
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	288 DcmElement *element = NULL;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	289 if (!dicom.findAndGetElement(k, element).good() \|\|
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	290 element == NULL)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	291 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	292 return false;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	293 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	294
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	295 try
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	296 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	297 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	298 if (blockUri == NULL)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	299 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	300 // The user asks how many blocks are presents in this pixel data
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	301 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	302
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	303 Json::Value result(Json::arrayValue);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	304 for (unsigned int i = 0; i < blocks; i++)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	305 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	306 result.append(boost::lexical_cast<std::string>(i));
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	307 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	308
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	309 output.AnswerJson(result);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	310 return true;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	311 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	312
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	313
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	314 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	315
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	316 if (block < GetPixelDataBlockCount(pixelData, transferSyntax))
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	317 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	318 DcmPixelSequence* pixelSequence = NULL;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	319 if (pixelData.getEncapsulatedRepresentation
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	320 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	321 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	322 // This is the case for JPEG transfer syntaxes
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	323 if (block < pixelSequence->card())
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	324 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	325 DcmPixelItem* pixelItem = NULL;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	326 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	327 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	328 if (pixelItem->getLength() == 0)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	329 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	330 output.AnswerBuffer(NULL, 0, CONTENT_TYPE_OCTET_STREAM);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	331 return true;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	332 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	333
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	334 Uint8* buffer = NULL;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	335 if (pixelItem->getUint8Array(buffer).good() && buffer)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	336 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	337 output.AnswerBuffer(buffer, pixelItem->getLength(), CONTENT_TYPE_OCTET_STREAM);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	338 return true;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	339 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	340 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	341 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	342 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	343 else
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	344 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	345 // This is the case for raw, uncompressed image buffers
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	346 assert(*blockUri == "0");
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	347 AnswerDicomField(output, *element, transferSyntax);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	348 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	349 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	350 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	351 catch (boost::bad_lexical_cast&)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	352 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	353 // The URI entered by the user is not a number
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	354 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	355 catch (std::bad_cast&)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	356 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	357 // This should never happen
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	358 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	359
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	360 return false;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	361 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	362
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	363
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	364
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	365 static void SendPathValueForLeaf(RestApiOutput& output,
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	366 const std::string& tag,
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	367 DcmItem& dicom,
aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	368 E_TransferSyntax transferSyntax)
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	369 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	370 DcmTagKey k;
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	371 ParseTagAndGroup(k, tag);
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	372
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	373 DcmSequenceOfItems* sequence = NULL;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	374 if (dicom.findAndGetSequence(k, sequence).good() &&
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	375 sequence != NULL &&
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	376 sequence->getVR() == EVR_SQ)
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	377 {
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	378 SendSequence(output, *sequence);
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	379 return;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	380 }
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	381
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	382 DcmElement* element = NULL;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	383 if (dicom.findAndGetElement(k, element).good() &&
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	384 element != NULL &&
318 b83d85a85d69 fix for private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 315 diff changeset	385 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	386 element->getVR() != EVR_SQ)
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	387 {
676 aa5ca7a2166f experiments with pixel data Sebastien Jodogne <s.jodogne@gmail.com> parents: 661 diff changeset	388 AnswerDicomField(output, *element, transferSyntax);
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	389 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	390 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	391
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	392 void ParsedDicomFile::SendPathValue(RestApiOutput& output,
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	393 const UriComponents& uri)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	394 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	395 DcmItem* dicom = file_->getDataset();
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	396 E_TransferSyntax transferSyntax = file_->getDataset()->getOriginalXfer();
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	397
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	398 // Special case: Accessing the pixel data
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	399 if (uri.size() == 1 \|\|
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	400 uri.size() == 2)
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	401 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	402 DcmTagKey tag;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	403 ParseTagAndGroup(tag, uri[0]);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	404
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	405 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() &&
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	406 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement())
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	407 {
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	408 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]);
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	409 return;
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	410 }
efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	411 }
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	412
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	413 // Go down in the tag hierarchy according to the URI
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	414 for (size_t pos = 0; pos < uri.size() / 2; pos++)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	415 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	416 size_t index;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	417 try
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	418 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	419 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]);
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	420 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	421 catch (boost::bad_lexical_cast&)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	422 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	423 return;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	424 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	425
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	426 DcmTagKey k;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	427 DcmItem *child = NULL;
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	428 ParseTagAndGroup(k, uri[2 * pos]);
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	429 if (!dicom->findAndGetSequenceItem(k, child, index).good() \|\|
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	430 child == NULL)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	431 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	432 return;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	433 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	434
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	435 dicom = child;
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	436 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	437
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	438 // We have reached the end of the URI
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	439 if (uri.size() % 2 == 0)
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	440 {
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	441 SendPathValueForDictionary(output, *dicom);
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	442 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	443 else
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	444 {
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	445 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax);
285 4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	446 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	447 }
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	448
4031f73fe0e4 access to the raw dicom tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 176 diff changeset	449
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	450
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	451
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	452
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	453 static DcmElement* CreateElementForTag(const DicomTag& tag)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	454 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	455 DcmTag key(tag.GetGroup(), tag.GetElement());
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	456
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	457 switch (key.getEVR())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	458 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	459 // http://support.dcmtk.org/docs/dcvr_8h-source.html
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	460
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	461 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	462 * TODO.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	463 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	464
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	465 case EVR_OB: // other byte
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	466 case EVR_OF: // other float
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	467 case EVR_OW: // other word
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	468 case EVR_AT: // attribute tag
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	469 throw OrthancException(ErrorCode_NotImplemented);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	470
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	471 case EVR_UN: // unknown value representation
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	472 throw OrthancException(ErrorCode_ParameterOutOfRange);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	473
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	474
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	475 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	476 * String types.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	477 * http://support.dcmtk.org/docs/classDcmByteString.html
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	478 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	479
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	480 case EVR_AS: // age string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	481 return new DcmAgeString(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	482
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	483 case EVR_AE: // application entity title
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	484 return new DcmApplicationEntity(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	485
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	486 case EVR_CS: // code string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	487 return new DcmCodeString(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	488
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	489 case EVR_DA: // date string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	490 return new DcmDate(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	491
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	492 case EVR_DT: // date time string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	493 return new DcmDateTime(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	494
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	495 case EVR_DS: // decimal string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	496 return new DcmDecimalString(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	497
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	498 case EVR_IS: // integer string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	499 return new DcmIntegerString(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	500
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	501 case EVR_TM: // time string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	502 return new DcmTime(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	503
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	504 case EVR_UI: // unique identifier
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	505 return new DcmUniqueIdentifier(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	506
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	507 case EVR_ST: // short text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	508 return new DcmShortText(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	509
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	510 case EVR_LO: // long string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	511 return new DcmLongString(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	512
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	513 case EVR_LT: // long text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	514 return new DcmLongText(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	515
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	516 case EVR_UT: // unlimited text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	517 return new DcmUnlimitedText(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	518
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	519 case EVR_SH: // short string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	520 return new DcmShortString(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	521
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	522 case EVR_PN: // person name
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	523 return new DcmPersonName(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	524
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	525
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	526 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	527 * Numerical types
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	528 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	529
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	530 case EVR_SL: // signed long
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	531 return new DcmSignedLong(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	532
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	533 case EVR_SS: // signed short
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	534 return new DcmSignedShort(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	535
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	536 case EVR_UL: // unsigned long
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	537 return new DcmUnsignedLong(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	538
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	539 case EVR_US: // unsigned short
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	540 return new DcmUnsignedShort(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	541
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	542 case EVR_FL: // float single-precision
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	543 return new DcmFloatingPointSingle(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	544
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	545 case EVR_FD: // float double-precision
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	546 return new DcmFloatingPointDouble(key);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	547
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	548
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	549 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	550 * Sequence types, should never occur at this point.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	551 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	552
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	553 case EVR_SQ: // sequence of items
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	554 throw OrthancException(ErrorCode_ParameterOutOfRange);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	555
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	556
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	557 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	558 * Internal to DCMTK.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	559 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	560
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	561 case EVR_ox: // OB or OW depending on context
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	562 case EVR_xs: // SS or US depending on context
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	563 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	564 case EVR_na: // na="not applicable", for data which has no VR
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	565 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	566 case EVR_item: // used internally for items
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	567 case EVR_metainfo: // used internally for meta info datasets
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	568 case EVR_dataset: // used internally for datasets
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	569 case EVR_fileFormat: // used internally for DICOM files
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	570 case EVR_dicomDir: // used internally for DICOMDIR objects
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	571 case EVR_dirRecord: // used internally for DICOMDIR records
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	572 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	573 case EVR_pixelItem: // used internally for pixel items in a compressed image
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	574 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	575 case EVR_PixelData: // used internally for uncompressed pixeld data
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	576 case EVR_OverlayData: // used internally for overlay data
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	577 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	578 default:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	579 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	580 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	581
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	582 throw OrthancException(ErrorCode_InternalError);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	583 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	584
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	585
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	586
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	587 static void FillElementWithString(DcmElement& element,
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	588 const DicomTag& tag,
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	589 const std::string& value)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	590 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	591 DcmTag key(tag.GetGroup(), tag.GetElement());
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	592 bool ok = false;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	593
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	594 try
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	595 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	596 switch (key.getEVR())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	597 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	598 // http://support.dcmtk.org/docs/dcvr_8h-source.html
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	599
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	600 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	601 * TODO.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	602 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	603
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	604 case EVR_OB: // other byte
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	605 case EVR_OF: // other float
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	606 case EVR_OW: // other word
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	607 case EVR_AT: // attribute tag
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	608 throw OrthancException(ErrorCode_NotImplemented);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	609
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	610 case EVR_UN: // unknown value representation
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	611 throw OrthancException(ErrorCode_ParameterOutOfRange);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	612
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	613
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	614 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	615 * String types.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	616 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	617
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	618 case EVR_DS: // decimal string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	619 case EVR_IS: // integer string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	620 case EVR_AS: // age string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	621 case EVR_DA: // date string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	622 case EVR_DT: // date time string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	623 case EVR_TM: // time string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	624 case EVR_AE: // application entity title
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	625 case EVR_CS: // code string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	626 case EVR_SH: // short string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	627 case EVR_LO: // long string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	628 case EVR_ST: // short text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	629 case EVR_LT: // long text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	630 case EVR_UT: // unlimited text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	631 case EVR_PN: // person name
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	632 case EVR_UI: // unique identifier
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	633 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	634 ok = element.putString(value.c_str()).good();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	635 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	636 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	637
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	638
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	639 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	640 * Numerical types
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	641 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	642
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	643 case EVR_SL: // signed long
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	644 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	645 ok = element.putSint32(boost::lexical_cast<Sint32>(value)).good();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	646 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	647 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	648
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	649 case EVR_SS: // signed short
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	650 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	651 ok = element.putSint16(boost::lexical_cast<Sint16>(value)).good();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	652 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	653 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	654
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	655 case EVR_UL: // unsigned long
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	656 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	657 ok = element.putUint32(boost::lexical_cast<Uint32>(value)).good();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	658 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	659 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	660
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	661 case EVR_US: // unsigned short
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	662 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	663 ok = element.putUint16(boost::lexical_cast<Uint16>(value)).good();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	664 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	665 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	666
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	667 case EVR_FL: // float single-precision
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	668 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	669 ok = element.putFloat32(boost::lexical_cast<float>(value)).good();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	670 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	671 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	672
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	673 case EVR_FD: // float double-precision
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	674 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	675 ok = element.putFloat64(boost::lexical_cast<double>(value)).good();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	676 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	677 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	678
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	679
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	680 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	681 * Sequence types, should never occur at this point.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	682 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	683
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	684 case EVR_SQ: // sequence of items
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	685 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	686 ok = false;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	687 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	688 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	689
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	690
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	691 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	692 * Internal to DCMTK.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	693 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	694
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	695 case EVR_ox: // OB or OW depending on context
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	696 case EVR_xs: // SS or US depending on context
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	697 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	698 case EVR_na: // na="not applicable", for data which has no VR
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	699 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	700 case EVR_item: // used internally for items
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	701 case EVR_metainfo: // used internally for meta info datasets
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	702 case EVR_dataset: // used internally for datasets
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	703 case EVR_fileFormat: // used internally for DICOM files
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	704 case EVR_dicomDir: // used internally for DICOMDIR objects
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	705 case EVR_dirRecord: // used internally for DICOMDIR records
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	706 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	707 case EVR_pixelItem: // used internally for pixel items in a compressed image
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	708 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	709 case EVR_PixelData: // used internally for uncompressed pixeld data
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	710 case EVR_OverlayData: // used internally for overlay data
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	711 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	712 default:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	713 break;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	714 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	715 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	716 catch (boost::bad_lexical_cast&)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	717 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	718 ok = false;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	719 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	720
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	721 if (!ok)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	722 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	723 throw OrthancException(ErrorCode_InternalError);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	724 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	725 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	726
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	727
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	728 void ParsedDicomFile::Remove(const DicomTag& tag)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	729 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	730 DcmTagKey key(tag.GetGroup(), tag.GetElement());
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	731 DcmElement* element = file_->getDataset()->remove(key);
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	732 if (element != NULL)
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	733 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	734 delete element;
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	735 }
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	736 }
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	737
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	738
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	739
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	740 void ParsedDicomFile::RemovePrivateTags()
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	741 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	742 typedef std::list<DcmElement*> Tags;
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	743
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	744 Tags privateTags;
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	745
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	746 DcmDataset& dataset = *file_->getDataset();
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	747 for (unsigned long i = 0; i < dataset.card(); i++)
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	748 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	749 DcmElement* element = dataset.getElement(i);
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	750 DcmTag tag(element->getTag());
311 26efccdff583 anonymisation Sebastien Jodogne <s.jodogne@gmail.com> parents: 308 diff changeset	751 if (!strcmp("PrivateCreator", tag.getTagName()) \|\| // TODO - This may change with future versions of DCMTK
26efccdff583 anonymisation Sebastien Jodogne <s.jodogne@gmail.com> parents: 308 diff changeset	752 tag.getPrivateCreator() != NULL)
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	753 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	754 privateTags.push_back(element);
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	755 }
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	756 }
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	757
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	758 for (Tags::iterator it = privateTags.begin();
656 08eca5d86aad fixes to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 465 diff changeset	759 it != privateTags.end(); ++it)
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	760 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	761 DcmElement* tmp = dataset.remove(*it);
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	762 if (tmp != NULL)
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	763 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	764 delete tmp;
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	765 }
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	766 }
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	767 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	768
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	769
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	770
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	771 void ParsedDicomFile::Insert(const DicomTag& tag,
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	772 const std::string& value)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	773 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	774 std::auto_ptr<DcmElement> element(CreateElementForTag(tag));
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	775 FillElementWithString(*element, tag, value);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	776
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	777 if (!file_->getDataset()->insert(element.release(), false, false).good())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	778 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	779 // This field already exists
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	780 throw OrthancException(ErrorCode_InternalError);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	781 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	782 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	783
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	784
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	785 void ParsedDicomFile::Replace(const DicomTag& tag,
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	786 const std::string& value,
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	787 DicomReplaceMode mode)
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	788 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	789 DcmTagKey key(tag.GetGroup(), tag.GetElement());
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	790 DcmElement* element = NULL;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	791
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	792 if (!file_->getDataset()->findAndGetElement(key, element).good() \|\|
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	793 element == NULL)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	794 {
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	795 // This field does not exist, act wrt. the specified "mode"
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	796 switch (mode)
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	797 {
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	798 case DicomReplaceMode_InsertIfAbsent:
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	799 Insert(tag, value);
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	800 break;
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	801
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	802 case DicomReplaceMode_ThrowIfAbsent:
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	803 throw OrthancException(ErrorCode_InexistentItem);
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	804
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	805 case DicomReplaceMode_IgnoreIfAbsent:
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	806 return;
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	807 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	808 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	809 else
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	810 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	811 FillElementWithString(*element, tag, value);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	812 }
303 c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	813
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	814
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	815 /**
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	816 * dcmodify will automatically correct 'Media Storage SOP Class
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	817 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	818 * you make changes to the related tags in the dataset ('SOP Class
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	819 * UID' and 'SOP Instance UID') via insert or modify mode
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	820 * options. You can disable this behaviour by using the -nmu
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	821 * option.
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	822 **/
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	823 if (tag == DICOM_TAG_SOP_CLASS_UID)
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	824 Replace(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, value, DicomReplaceMode_InsertIfAbsent);
303 c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	825
c76a35a85c69 ready for anonymization Sebastien Jodogne <s.jodogne@gmail.com> parents: 302 diff changeset	826 if (tag == DICOM_TAG_SOP_INSTANCE_UID)
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	827 Replace(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, value, DicomReplaceMode_InsertIfAbsent);
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	828 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	829
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	830
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	831 void ParsedDicomFile::Answer(RestApiOutput& output)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	832 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	833 std::string serialized;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	834 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, file_->getDataset()))
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	835 {
682 efc4928be6fb Recover pixel data for more transfer syntaxes (notably JPEG) Sebastien Jodogne <s.jodogne@gmail.com> parents: 677 diff changeset	836 output.AnswerBuffer(serialized, CONTENT_TYPE_OCTET_STREAM);
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	837 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	838 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	839
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	840
308 fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	841
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	842 bool ParsedDicomFile::GetTagValue(std::string& value,
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	843 const DicomTag& tag)
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	844 {
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	845 DcmTagKey k(tag.GetGroup(), tag.GetElement());
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	846 DcmDataset& dataset = *file_->getDataset();
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	847 DcmElement* element = NULL;
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	848 if (!dataset.findAndGetElement(k, element).good() \|\|
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	849 element == NULL)
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	850 {
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	851 return false;
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	852 }
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	853
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	854 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(*element));
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	855
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	856 if (v.get() == NULL)
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	857 {
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	858 value = "";
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	859 }
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	860 else
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	861 {
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	862 value = v->AsString();
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	863 }
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	864
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	865 return true;
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	866 }
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	867
fbf2b2282086 inplace modification of series and studies Sebastien Jodogne <s.jodogne@gmail.com> parents: 306 diff changeset	868
315 fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	869
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	870 DicomInstanceHasher ParsedDicomFile::GetHasher()
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	871 {
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	872 std::string patientId, studyUid, seriesUid, instanceUid;
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	873
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	874 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID) \|\|
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	875 !GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) \|\|
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	876 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) \|\|
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	877 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID))
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	878 {
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	879 throw OrthancException(ErrorCode_BadFileFormat);
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	880 }
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	881
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	882 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid);
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	883 }
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	884
fc856d175d18 modifications Sebastien Jodogne <s.jodogne@gmail.com> parents: 311 diff changeset	885
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	886 void FromDcmtkBridge::Convert(DicomMap& target, DcmDataset& dataset)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	887 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	888 target.Clear();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	889 for (unsigned long i = 0; i < dataset.card(); i++)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	890 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	891 DcmElement* element = dataset.getElement(i);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	892 if (element && element->isLeaf())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	893 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	894 target.SetValue(element->getTag().getGTag(),
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	895 element->getTag().getETag(),
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	896 ConvertLeafElement(*element));
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	897 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	898 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	899 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	900
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	901
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	902 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	903 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	904 return DicomTag(element.getGTag(), element.getETag());
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	905 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	906
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	907
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	908 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	909 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	910 if (!element.isLeaf())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	911 {
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	912 throw OrthancException("Only applicable to leaf elements");
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	913 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	914
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	915 if (element.isaString())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	916 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	917 char *c;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	918 if (element.getString(c).good() &&
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	919 c != NULL)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	920 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	921 std::string s(c);
107 3b45473c0a73 replace boost::locale with iconv for debian Sebastien Jodogne <s.jodogne@gmail.com> parents: 106 diff changeset	922 std::string utf8 = Toolbox::ConvertToUtf8(s, "ISO-8859-1"); // TODO Parameter?
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	923 return new DicomString(utf8);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	924 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	925 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	926 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	927 return new DicomNullValue;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	928 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	929 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	930
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	931 try
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	932 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	933 // http://support.dcmtk.org/docs/dcvr_8h-source.html
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	934 switch (element.getVR())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	935 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	936
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	937 /**
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	938 * TODO.
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	939 **/
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	940
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	941 case EVR_OB: // other byte
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	942 case EVR_OF: // other float
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	943 case EVR_OW: // other word
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	944 case EVR_AT: // attribute tag
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	945 case EVR_UN: // unknown value representation
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	946 return new DicomNullValue();
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	947
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	948 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	949 * String types, should never happen at this point because of
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	950 * "element.isaString()".
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	951 **/
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	952
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	953 case EVR_DS: // decimal string
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	954 case EVR_IS: // integer string
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	955 case EVR_AS: // age string
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	956 case EVR_DA: // date string
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	957 case EVR_DT: // date time string
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	958 case EVR_TM: // time string
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	959 case EVR_AE: // application entity title
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	960 case EVR_CS: // code string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	961 case EVR_SH: // short string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	962 case EVR_LO: // long string
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	963 case EVR_ST: // short text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	964 case EVR_LT: // long text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	965 case EVR_UT: // unlimited text
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	966 case EVR_PN: // person name
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	967 case EVR_UI: // unique identifier
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	968 return new DicomNullValue();
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	969
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	970
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	971 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	972 * Numerical types
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	973 **/
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	974
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	975 case EVR_SL: // signed long
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	976 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	977 Sint32 f;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	978 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	979 return new DicomString(boost::lexical_cast<std::string>(f));
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	980 else
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	981 return new DicomNullValue();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	982 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	983
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	984 case EVR_SS: // signed short
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	985 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	986 Sint16 f;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	987 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	988 return new DicomString(boost::lexical_cast<std::string>(f));
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	989 else
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	990 return new DicomNullValue();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	991 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	992
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	993 case EVR_UL: // unsigned long
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	994 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	995 Uint32 f;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	996 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	997 return new DicomString(boost::lexical_cast<std::string>(f));
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	998 else
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	999 return new DicomNullValue();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1000 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1001
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1002 case EVR_US: // unsigned short
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1003 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1004 Uint16 f;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1005 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1006 return new DicomString(boost::lexical_cast<std::string>(f));
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1007 else
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1008 return new DicomNullValue();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1009 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1010
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1011 case EVR_FL: // float single-precision
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1012 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1013 Float32 f;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1014 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1015 return new DicomString(boost::lexical_cast<std::string>(f));
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1016 else
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1017 return new DicomNullValue();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1018 }
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1019
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1020 case EVR_FD: // float double-precision
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1021 {
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1022 Float64 f;
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1023 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good())
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1024 return new DicomString(boost::lexical_cast<std::string>(f));
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1025 else
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1026 return new DicomNullValue();
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1027 }
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1028
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1029
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1030 /**
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1031 * Sequence types, should never occur at this point because of
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1032 * "element.isLeaf()".
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1033 **/
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1034
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1035 case EVR_SQ: // sequence of items
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1036 return new DicomNullValue;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1037
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1038
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1039 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1040 * Internal to DCMTK.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1041 **/
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1042
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1043 case EVR_ox: // OB or OW depending on context
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1044 case EVR_xs: // SS or US depending on context
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1045 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1046 case EVR_na: // na="not applicable", for data which has no VR
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1047 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1048 case EVR_item: // used internally for items
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1049 case EVR_metainfo: // used internally for meta info datasets
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1050 case EVR_dataset: // used internally for datasets
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1051 case EVR_fileFormat: // used internally for DICOM files
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1052 case EVR_dicomDir: // used internally for DICOMDIR objects
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1053 case EVR_dirRecord: // used internally for DICOMDIR records
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1054 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1055 case EVR_pixelItem: // used internally for pixel items in a compressed image
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1056 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1057 case EVR_PixelData: // used internally for uncompressed pixeld data
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1058 case EVR_OverlayData: // used internally for overlay data
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1059 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1060 return new DicomNullValue;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1061
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1062
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1063 /**
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1064 * Default case.
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1065 **/
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1066
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1067 default:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1068 return new DicomNullValue;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1069 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1070 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1071 catch (boost::bad_lexical_cast)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1072 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1073 return new DicomNullValue;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1074 }
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1075 catch (std::bad_cast)
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1076 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1077 return new DicomNullValue;
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1078 }
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1079 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1080
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1081
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1082 static void StoreElement(Json::Value& target,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1083 DcmElement& element,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1084 unsigned int maxStringLength);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1085
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1086 static void StoreItem(Json::Value& target,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1087 DcmItem& item,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1088 unsigned int maxStringLength)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1089 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1090 target = Json::Value(Json::objectValue);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1091
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1092 for (unsigned long i = 0; i < item.card(); i++)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1093 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1094 DcmElement* element = item.getElement(i);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1095 StoreElement(target, *element, maxStringLength);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1096 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1097 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1098
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1099
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1100 static void StoreElement(Json::Value& target,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1101 DcmElement& element,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1102 unsigned int maxStringLength)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1103 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1104 assert(target.type() == Json::objectValue);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1105
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1106 DicomTag tag(FromDcmtkBridge::GetTag(element));
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1107 const std::string formattedTag = tag.Format();
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1108
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1109 #if 0
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1110 const std::string tagName = FromDcmtkBridge::GetName(tag);
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1111 #else
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1112 // This version of the code gives access to the name of the private tags
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1113 DcmTag tagbis(element.getTag());
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1114 const std::string tagName(tagbis.getTagName());
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1115 #endif
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1116
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1117 if (element.isLeaf())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1118 {
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1119 Json::Value value(Json::objectValue);
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1120 value["Name"] = tagName;
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1121
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1122 if (tagbis.getPrivateCreator() != NULL)
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1123 {
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1124 value["PrivateCreator"] = tagbis.getPrivateCreator();
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1125 }
326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1126
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1127 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element));
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1128 if (v->IsNull())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1129 {
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1130 value["Type"] = "Null";
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1131 value["Value"] = Json::nullValue;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1132 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1133 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1134 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1135 std::string s = v->AsString();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1136 if (maxStringLength == 0 \|\|
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1137 s.size() <= maxStringLength)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1138 {
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1139 value["Type"] = "String";
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1140 value["Value"] = s;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1141 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1142 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1143 {
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1144 value["Type"] = "TooLong";
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1145 value["Value"] = Json::nullValue;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1146 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1147 }
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1148
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1149 target[formattedTag] = value;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1150 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1151 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1152 {
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1153 Json::Value children(Json::arrayValue);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1154
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1155 // "All subclasses of DcmElement except for DcmSequenceOfItems
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1156 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1157 // etc. are not." The following cast is thus OK.
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1158 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1159
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1160 for (unsigned long i = 0; i < sequence.card(); i++)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1161 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1162 DcmItem* child = sequence.getItem(i);
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1163 Json::Value& v = children.append(Json::objectValue);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1164 StoreItem(v, *child, maxStringLength);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1165 }
35 f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1166
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1167 target[formattedTag]["Name"] = tagName;
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1168 target[formattedTag]["Type"] = "Sequence";
f6d12037f886 full json vs. simplified json Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1169 target[formattedTag]["Value"] = children;
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1170 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1171 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1172
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1173
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1174 void FromDcmtkBridge::ToJson(Json::Value& root,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1175 DcmDataset& dataset,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1176 unsigned int maxStringLength)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1177 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1178 StoreItem(root, dataset, maxStringLength);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1179 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1180
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1181
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1182
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1183 void FromDcmtkBridge::ToJson(Json::Value& target,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1184 const std::string& path,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1185 unsigned int maxStringLength)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1186 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1187 DcmFileFormat dicom;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1188 if (!dicom.loadFile(path.c_str()).good())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1189 {
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	1190 throw OrthancException(ErrorCode_BadFileFormat);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1191 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1192 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1193 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1194 FromDcmtkBridge::ToJson(target, *dicom.getDataset(), maxStringLength);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1195 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1196 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1197
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1198
368 80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1199 static void ExtractPngImageColorPreview(std::string& result,
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1200 DicomIntegerPixelAccessor& accessor)
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1201 {
368 80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1202 assert(accessor.GetChannelCount() == 3);
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1203 PngWriter w;
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1204
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1205 std::vector<uint8_t> image(accessor.GetWidth() * accessor.GetHeight() * 3, 0);
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1206 uint8_t* pixel = &image[0];
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1207
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1208 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1209 {
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1210 for (unsigned int x = 0; x < accessor.GetWidth(); x++)
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1211 {
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1212 for (unsigned int c = 0; c < 3; c++, pixel++)
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1213 {
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1214 int32_t v = accessor.GetValue(x, y, c);
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1215 if (v < 0)
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1216 *pixel = 0;
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1217 else if (v > 255)
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1218 *pixel = 255;
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1219 else
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1220 *pixel = v;
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1221 }
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1222 }
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1223 }
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1224
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1225 w.WriteToMemory(result, accessor.GetWidth(), accessor.GetHeight(),
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1226 accessor.GetWidth() * 3, PixelFormat_RGB24, &image[0]);
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1227 }
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1228
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1229
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1230 static void ExtractPngImageGrayscalePreview(std::string& result,
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1231 DicomIntegerPixelAccessor& accessor)
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1232 {
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1233 assert(accessor.GetChannelCount() == 1);
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1234 PngWriter w;
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1235
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1236 int32_t min, max;
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1237 accessor.GetExtremeValues(min, max);
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1238
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1239 std::vector<uint8_t> image(accessor.GetWidth() * accessor.GetHeight(), 0);
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1240 if (min != max)
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1241 {
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1242 uint8_t* pixel = &image[0];
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1243 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1244 {
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1245 for (unsigned int x = 0; x < accessor.GetWidth(); x++, pixel++)
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1246 {
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1247 int32_t v = accessor.GetValue(x, y);
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1248 *pixel = static_cast<uint8_t>(
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1249 boost::math::lround(static_cast<float>(v - min) /
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1250 static_cast<float>(max - min) * 255.0f));
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1251 }
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1252 }
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1253 }
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1254
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1255 w.WriteToMemory(result, accessor.GetWidth(), accessor.GetHeight(),
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1256 accessor.GetWidth(), PixelFormat_Grayscale8, &image[0]);
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1257 }
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1258
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1259
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1260 template <typename T>
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1261 static void ExtractPngImageTruncate(std::string& result,
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1262 DicomIntegerPixelAccessor& accessor,
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1263 PixelFormat format)
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1264 {
368 80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1265 assert(accessor.GetChannelCount() == 1);
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1266
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1267 PngWriter w;
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1268
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1269 std::vector<T> image(accessor.GetWidth() * accessor.GetHeight(), 0);
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1270 T* pixel = &image[0];
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1271 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1272 {
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1273 for (unsigned int x = 0; x < accessor.GetWidth(); x++, pixel++)
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1274 {
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1275 int32_t v = accessor.GetValue(x, y);
464 5987dd8e0776 fix reading signed values in dicom Sebastien Jodogne <s.jodogne@gmail.com> parents: 454 diff changeset	1276 if (v < static_cast<int32_t>(std::numeric_limits<T>::min()))
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1277 *pixel = std::numeric_limits<T>::min();
464 5987dd8e0776 fix reading signed values in dicom Sebastien Jodogne <s.jodogne@gmail.com> parents: 454 diff changeset	1278 else if (v > static_cast<int32_t>(std::numeric_limits<T>::max()))
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1279 *pixel = std::numeric_limits<T>::max();
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1280 else
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1281 *pixel = static_cast<T>(v);
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1282 }
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1283 }
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1284
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1285 w.WriteToMemory(result, accessor.GetWidth(), accessor.GetHeight(),
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1286 accessor.GetWidth() * sizeof(T), format, &image[0]);
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1287 }
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1288
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1289
319 760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1290 static bool DecodePsmctRle1(std::string& output,
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1291 DcmDataset& dataset)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1292 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1293 static const DicomTag tagContent(0x07a1, 0x100a);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1294 static const DicomTag tagCompressionType(0x07a1, 0x1011);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1295
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1296 DcmElement* e;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1297 char* c;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1298
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1299 // Check whether the DICOM instance contains an image encoded with
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1300 // the PMSCT_RLE1 scheme.
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1301 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(tagCompressionType), e).good() \|\|
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1302 e == NULL \|\|
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1303 !e->isaString() \|\|
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1304 !e->getString(c).good() \|\|
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1305 c == NULL \|\|
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1306 strcmp("PMSCT_RLE1", c))
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1307 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1308 return false;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1309 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1310
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1311 // OK, this is a custom RLE encoding from Philips. Get the pixel
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1312 // data from the appropriate private DICOM tag.
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1313 Uint8* pixData = NULL;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1314 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(tagContent), e).good() \|\|
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1315 e == NULL \|\|
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1316 e->getUint8Array(pixData) != EC_Normal)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1317 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1318 return false;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1319 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1320
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1321 // The "unsigned" below IS VERY IMPORTANT
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1322 const uint8_t* inbuffer = reinterpret_cast<const uint8_t*>(pixData);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1323 const size_t length = e->getLength();
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1324
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1325 /**
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1326 * The code below is an adaptation of a sample code for GDCM by
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1327 * Mathieu Malaterre (under a BSD license).
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1328 * http://gdcm.sourceforge.net/html/rle2img_8cxx-example.html
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1329 **/
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1330
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1331 // RLE pass
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1332 std::vector<uint8_t> temp;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1333 temp.reserve(length);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1334 for (size_t i = 0; i < length; i++)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1335 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1336 if (inbuffer[i] == 0xa5)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1337 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1338 temp.push_back(inbuffer[i+2]);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1339 for (uint8_t repeat = inbuffer[i + 1]; repeat != 0; repeat--)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1340 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1341 temp.push_back(inbuffer[i+2]);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1342 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1343 i += 2;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1344 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1345 else
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1346 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1347 temp.push_back(inbuffer[i]);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1348 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1349 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1350
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1351 // Delta encoding pass
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1352 uint16_t delta = 0;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1353 output.clear();
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1354 output.reserve(temp.size());
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1355 for (size_t i = 0; i < temp.size(); i++)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1356 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1357 uint16_t value;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1358
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1359 if (temp[i] == 0x5a)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1360 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1361 uint16_t v1 = temp[i + 1];
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1362 uint16_t v2 = temp[i + 2];
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1363 value = (v2 << 8) + v1;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1364 i += 2;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1365 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1366 else
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1367 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1368 value = delta + (int8_t) temp[i];
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1369 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1370
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1371 output.push_back(value & 0xff);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1372 output.push_back(value >> 8);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1373 delta = value;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1374 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1375
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1376 if (output.size() % 2)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1377 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1378 output.resize(output.size() - 1);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1379 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1380
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1381 return true;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1382 }
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1383
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1384
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1385 void FromDcmtkBridge::ExtractPngImage(std::string& result,
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1386 DcmDataset& dataset,
53 293038baf8f1 access to multi-frame images Sebastien Jodogne <s.jodogne@gmail.com> parents: 50 diff changeset	1387 unsigned int frame,
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1388 ImageExtractionMode mode)
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1389 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1390 // See also: http://support.dcmtk.org/wiki/dcmtk/howto/accessing-compressed-data
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1391
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1392 std::auto_ptr<DicomIntegerPixelAccessor> accessor;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1393
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1394 DicomMap m;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1395 FromDcmtkBridge::Convert(m, dataset);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1396
319 760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1397 std::string privateContent;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1398
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1399 DcmElement* e;
80 6212bf978584 status of series Sebastien Jodogne <s.jodogne@gmail.com> parents: 79 diff changeset	1400 if (dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), e).good() &&
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1401 e != NULL)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1402 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1403 Uint8* pixData = NULL;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1404 if (e->getUint8Array(pixData) == EC_Normal)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1405 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1406 accessor.reset(new DicomIntegerPixelAccessor(m, pixData, e->getLength()));
53 293038baf8f1 access to multi-frame images Sebastien Jodogne <s.jodogne@gmail.com> parents: 50 diff changeset	1407 accessor->SetCurrentFrame(frame);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1408 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1409 }
319 760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1410 else if (DecodePsmctRle1(privateContent, dataset))
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1411 {
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1412 LOG(INFO) << "The PMSCT_RLE1 decoding has succeeded";
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1413 Uint8* pixData = NULL;
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1414 if (privateContent.size() > 0)
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1415 pixData = reinterpret_cast<Uint8*>(&privateContent[0]);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1416 accessor.reset(new DicomIntegerPixelAccessor(m, pixData, privateContent.size()));
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1417 accessor->SetCurrentFrame(frame);
760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1418 }
419 ab070786f478 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 399 diff changeset	1419
ab070786f478 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 399 diff changeset	1420 if (accessor.get() == NULL)
ab070786f478 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 399 diff changeset	1421 {
ab070786f478 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 399 diff changeset	1422 throw OrthancException(ErrorCode_BadFileFormat);
ab070786f478 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 399 diff changeset	1423 }
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1424
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1425 PixelFormat format;
369 4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1426 bool supported = false;
368 80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1427
369 4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1428 if (accessor->GetChannelCount() == 1)
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1429 {
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1430 switch (mode)
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1431 {
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1432 case ImageExtractionMode_Preview:
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1433 supported = true;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1434 format = PixelFormat_Grayscale8;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1435 break;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1436
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1437 case ImageExtractionMode_UInt8:
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1438 supported = true;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1439 format = PixelFormat_Grayscale8;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1440 break;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1441
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1442 case ImageExtractionMode_UInt16:
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1443 supported = true;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1444 format = PixelFormat_Grayscale16;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1445 break;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1446
465 7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1447 case ImageExtractionMode_Int16:
7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1448 supported = true;
7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1449 format = PixelFormat_SignedGrayscale16;
7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1450 break;
7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1451
369 4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1452 default:
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1453 supported = false;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1454 break;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1455 }
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1456 }
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1457 else if (accessor->GetChannelCount() == 3)
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1458 {
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1459 switch (mode)
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1460 {
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1461 case ImageExtractionMode_Preview:
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1462 supported = true;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1463 format = PixelFormat_RGB24;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1464 break;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1465
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1466 default:
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1467 supported = false;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1468 break;
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1469 }
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1470 }
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1471
4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1472 if (!supported)
368 80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1473 {
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1474 throw OrthancException(ErrorCode_NotImplemented);
369 4632a044746e simplification of the code Sebastien Jodogne <s.jodogne@gmail.com> parents: 368 diff changeset	1475 }
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1476
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1477 if (accessor.get() == NULL \|\|
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1478 accessor->GetWidth() == 0 \|\|
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1479 accessor->GetHeight() == 0)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1480 {
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1481 PngWriter w;
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1482 w.WriteToMemory(result, 0, 0, 0, format, NULL);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1483 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1484 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1485 {
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1486 switch (mode)
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1487 {
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1488 case ImageExtractionMode_Preview:
368 80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1489 if (format == PixelFormat_Grayscale8)
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1490 ExtractPngImageGrayscalePreview(result, *accessor);
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1491 else
80011cd589e6 support of rgb images Sebastien Jodogne <s.jodogne@gmail.com> parents: 319 diff changeset	1492 ExtractPngImageColorPreview(result, *accessor);
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1493 break;
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1494
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1495 case ImageExtractionMode_UInt8:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1496 ExtractPngImageTruncate<uint8_t>(result, *accessor, format);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1497 break;
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1498
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1499 case ImageExtractionMode_UInt16:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1500 ExtractPngImageTruncate<uint16_t>(result, *accessor, format);
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1501 break;
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1502
465 7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1503 case ImageExtractionMode_Int16:
7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1504 ExtractPngImageTruncate<int16_t>(result, *accessor, format);
7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1505 break;
7a966b440f19 signed images to PNG Sebastien Jodogne <s.jodogne@gmail.com> parents: 464 diff changeset	1506
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1507 default:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1508 throw OrthancException(ErrorCode_NotImplemented);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1509 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1510 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1511 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1512
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1513
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1514 void FromDcmtkBridge::ExtractPngImage(std::string& result,
ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1515 const std::string& dicomContent,
53 293038baf8f1 access to multi-frame images Sebastien Jodogne <s.jodogne@gmail.com> parents: 50 diff changeset	1516 unsigned int frame,
42 ea48f38afe5f access to raw images Sebastien Jodogne <s.jodogne@gmail.com> parents: 41 diff changeset	1517 ImageExtractionMode mode)
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1518 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1519 DcmInputBufferStream is;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1520 if (dicomContent.size() > 0)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1521 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1522 is.setBuffer(&dicomContent[0], dicomContent.size());
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1523 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1524 is.setEos();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1525
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1526 DcmFileFormat dicom;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1527 if (dicom.read(is).good())
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1528 {
53 293038baf8f1 access to multi-frame images Sebastien Jodogne <s.jodogne@gmail.com> parents: 50 diff changeset	1529 ExtractPngImage(result, *dicom.getDataset(), frame, mode);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1530 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1531 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1532 {
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	1533 throw OrthancException(ErrorCode_BadFileFormat);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1534 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1535 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1536
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1537
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1538
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1539 std::string FromDcmtkBridge::GetName(const DicomTag& t)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1540 {
106 332fec038d52 patch for dcmtk dictionaries jodogne parents: 80 diff changeset	1541 // Some patches for important tags because of different DICOM
332fec038d52 patch for dcmtk dictionaries jodogne parents: 80 diff changeset	1542 // dictionaries between DCMTK versions
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1543 std::string n = t.GetMainTagsName();
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1544 if (n.size() != 0)
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1545 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1546 return n;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1547 }
106 332fec038d52 patch for dcmtk dictionaries jodogne parents: 80 diff changeset	1548 // End of patches
332fec038d52 patch for dcmtk dictionaries jodogne parents: 80 diff changeset	1549
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1550 #if 0
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1551 DcmTagKey tag(t.GetGroup(), t.GetElement());
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1552 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1553 const DcmDictEntry* entry = dict.findEntry(tag, NULL);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1554
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1555 std::string s(DcmTag_ERROR_TagName);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1556 if (entry != NULL)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1557 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1558 s = std::string(entry->getTagName());
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1559 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1560
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1561 dcmDataDict.unlock();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1562 return s;
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1563 #else
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1564 DcmTag tag(t.GetGroup(), t.GetElement());
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1565 const char* name = tag.getTagName();
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1566 if (name == NULL)
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1567 {
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1568 return DcmTag_ERROR_TagName;
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1569 }
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1570 else
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1571 {
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1572 return std::string(name);
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1573 }
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1574 #endif
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1575 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1576
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1577
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1578 DicomTag FromDcmtkBridge::ParseTag(const char* name)
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1579 {
304 4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1580 if (strlen(name) == 9 &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1581 isxdigit(name[0]) &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1582 isxdigit(name[1]) &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1583 isxdigit(name[2]) &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1584 isxdigit(name[3]) &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1585 name[4] == '-' &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1586 isxdigit(name[5]) &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1587 isxdigit(name[6]) &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1588 isxdigit(name[7]) &&
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1589 isxdigit(name[8]))
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1590 {
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1591 uint16_t group = GetTagValue(name);
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1592 uint16_t element = GetTagValue(name + 5);
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1593 return DicomTag(group, element);
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1594 }
4eea080e6e7a refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 303 diff changeset	1595
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1596 #if 0
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1597 const DcmDataDictionary& dict = dcmDataDict.rdlock();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1598 const DcmDictEntry* entry = dict.findEntry(name);
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1599
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1600 if (entry == NULL)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1601 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1602 dcmDataDict.unlock();
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	1603 throw OrthancException("Unknown DICOM tag");
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1604 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1605 else
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1606 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1607 DcmTagKey key = entry->getKey();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1608 DicomTag tag(key.getGroup(), key.getElement());
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1609 dcmDataDict.unlock();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1610 return tag;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1611 }
305 86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1612 #else
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1613 DcmTag tag;
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1614 if (DcmTag::findTagFromName(name, tag).good())
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1615 {
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1616 return DicomTag(tag.getGTag(), tag.getETag());
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1617 }
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1618 else
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1619 {
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1620 throw OrthancException("Unknown DICOM tag");
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1621 }
86bb79522f19 name of the private tags Sebastien Jodogne <s.jodogne@gmail.com> parents: 304 diff changeset	1622 #endif
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1623 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1624
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1625
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1626 void FromDcmtkBridge::Print(FILE* fp, const DicomMap& m)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1627 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1628 for (DicomMap::Map::const_iterator
656 08eca5d86aad fixes to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 465 diff changeset	1629 it = m.map_.begin(); it != m.map_.end(); ++it)
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1630 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1631 DicomTag t = it->first;
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1632 std::string s = it->second->AsString();
319 760d0f32cb34 PMSCT_RLE1 Sebastien Jodogne <s.jodogne@gmail.com> parents: 318 diff changeset	1633 fprintf(fp, "0x%04x 0x%04x (%s) [%s]\n", t.GetGroup(), t.GetElement(), GetName(t).c_str(), s.c_str());
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1634 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1635 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1636
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1637
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1638 void FromDcmtkBridge::ToJson(Json::Value& result,
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1639 const DicomMap& values)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1640 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1641 if (result.type() != Json::objectValue)
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1642 {
62 a70bb32802ae renaming Server Sebastien Jodogne <s.jodogne@gmail.com> parents: 57 diff changeset	1643 throw OrthancException(ErrorCode_BadParameterType);
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1644 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1645
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1646 result.clear();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1647
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1648 for (DicomMap::Map::const_iterator
656 08eca5d86aad fixes to cppcheck Sebastien Jodogne <s.jodogne@gmail.com> parents: 465 diff changeset	1649 it = values.map_.begin(); it != values.map_.end(); ++it)
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1650 {
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1651 result[GetName(it->first)] = it->second->AsString();
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1652 }
3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1653 }
176 81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1654
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1655
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1656 std::string FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel level)
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1657 {
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1658 char uid[100];
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1659
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1660 switch (level)
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1661 {
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1662 case DicomRootLevel_Patient:
311 26efccdff583 anonymisation Sebastien Jodogne <s.jodogne@gmail.com> parents: 308 diff changeset	1663 // The "PatientID" field is of type LO (Long String), 64
26efccdff583 anonymisation Sebastien Jodogne <s.jodogne@gmail.com> parents: 308 diff changeset	1664 // Bytes Maximum. An UUID is of length 36, thus it can be used
26efccdff583 anonymisation Sebastien Jodogne <s.jodogne@gmail.com> parents: 308 diff changeset	1665 // as a random PatientID.
26efccdff583 anonymisation Sebastien Jodogne <s.jodogne@gmail.com> parents: 308 diff changeset	1666 return Toolbox::GenerateUuid();
306 326d5a4a5af3 modification of instances Sebastien Jodogne <s.jodogne@gmail.com> parents: 305 diff changeset	1667
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1668 case DicomRootLevel_Instance:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1669 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
176 81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1670
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1671 case DicomRootLevel_Series:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1672 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
176 81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1673
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1674 case DicomRootLevel_Study:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1675 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
176 81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1676
302 238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1677 default:
238134081136 modification of dicom files Sebastien Jodogne <s.jodogne@gmail.com> parents: 291 diff changeset	1678 throw OrthancException(ErrorCode_ParameterOutOfRange);
176 81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1679 }
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1680 }
81f11fb357f2 uid generation Sebastien Jodogne <s.jodogne@gmail.com> parents: 136 diff changeset	1681
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1682 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer,
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1683 DcmDataset* dataSet)
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1684 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1685 // Determine the transfer syntax which shall be used to write the
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1686 // information to the file. We always switch to the Little Endian
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1687 // syntax, with explicit length.
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1688
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1689 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
661 d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1690
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1691
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1692 /**
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1693 * Note that up to Orthanc 0.7.1 (inclusive), the
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1694 * "EXS_LittleEndianExplicit" was always used to save the DICOM
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1695 * dataset into memory. We now keep the original transfer syntax
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1696 * (if available).
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1697 **/
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1698 E_TransferSyntax xfer = dataSet->getOriginalXfer();
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1699 if (xfer == EXS_Unknown)
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1700 {
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1701 // No information about the original transfer syntax: This is
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1702 // most probably a DICOM dataset that was read from memory.
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1703 xfer = EXS_LittleEndianExplicit;
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1704 }
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1705
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1706 E_EncodingType encodingType = /opt_sequenceType/ EET_ExplicitLength;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1707
661 d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1708 // Create the meta-header information
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1709 DcmFileFormat ff(dataSet);
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1710 ff.validateMetaInfo(xfer);
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1711
661 d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1712 // Create a memory buffer with the proper size
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1713 uint32_t s = ff.calcElementLength(xfer, encodingType);
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1714 buffer.resize(s);
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1715 DcmOutputBufferStream ob(&buffer[0], s);
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1716
661 d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1717 // Fill the memory buffer with the meta-header and the dataset
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1718 ff.transferInit();
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1719 OFCondition c = ff.write(ob, xfer, encodingType, NULL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1720 /opt_groupLength/ EGL_recalcGL,
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1721 /opt_paddingType/ EPD_withoutPadding);
d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1722 ff.transferEnd();
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1723
661 d233b5090105 accept more transfer syntaxes for C-Store SCP, write meta-header when receiving files Sebastien Jodogne <s.jodogne@gmail.com> parents: 656 diff changeset	1724 // Handle errors
291 4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1725 if (c.good())
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1726 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1727 return true;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1728 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1729 else
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1730 {
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1731 buffer.clear();
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1732 return false;
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1733 }
4d7469f72a0b embedding of dicom dictionaries Sebastien Jodogne <s.jodogne@gmail.com> parents: 285 diff changeset	1734 }
784 efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1735
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1736
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1737 void ParsedDicomFile::SaveToFile(const std::string& path)
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1738 {
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1739 // TODO Avoid using a temporary memory buffer, write directly on disk
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1740 std::string content;
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1741 SaveToMemoryBuffer(content);
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1742 Toolbox::WriteFile(content, path);
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1743 }
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1744
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1745
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1746 ParsedDicomFile::ParsedDicomFile()
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1747 {
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1748 file_.reset(new DcmFileFormat);
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1749 Replace(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Patient));
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1750 Replace(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Study));
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1751 Replace(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Series));
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1752 Replace(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(DicomRootLevel_Instance));
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1753 }
efd0215736d9 start of anonymization refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 689 diff changeset	1754
0 3959d33612cc initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1755 }

Mercurial > hg > orthanc

annotate OrthancServer/FromDcmtkBridge.cpp @ 784:efd0215736d9