Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancRestApi/OrthancRestResources.cpp @ 5152:c81f363d3aa3 malloc-trim
housekeeper thread to call malloc_trim and give back memory to the system
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Wed, 01 Feb 2023 18:38:39 +0100 |
| parents | e69a3ff39bc5 |
| children | d7274e43ea7c 0ea402b4d901 |
| rev | line source |
|---|---|
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU General Public License |
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "../PrecompiledHeadersServer.h" |
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24 #include "OrthancRestApi.h" |
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25 |
| 4045 | 26 #include "../../../OrthancFramework/Sources/Compression/GzipCompressor.h" |
| 27 #include "../../../OrthancFramework/Sources/DicomFormat/DicomImageInformation.h" | |
| 28 #include "../../../OrthancFramework/Sources/DicomParsing/DicomWebJsonVisitor.h" | |
| 29 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 30 #include "../../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" | |
| 31 #include "../../../OrthancFramework/Sources/HttpServer/HttpContentNegociation.h" | |
| 32 #include "../../../OrthancFramework/Sources/Images/Image.h" | |
| 33 #include "../../../OrthancFramework/Sources/Images/ImageProcessing.h" | |
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34 #include "../../../OrthancFramework/Sources/Images/NumpyWriter.h" |
| 4045 | 35 #include "../../../OrthancFramework/Sources/Logging.h" |
| 36 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h" | |
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37 #include "../../../OrthancFramework/Sources/SerializationToolbox.h" |
| 4045 | 38 |
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39 #include "../OrthancConfiguration.h" |
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40 #include "../Search/DatabaseLookup.h" |
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41 #include "../ServerContext.h" |
| 2131 | 42 #include "../ServerToolbox.h" |
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43 #include "../SliceOrdering.h" |
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44 |
| 3687 | 45 // This "include" is mandatory for Release builds using Linux Standard Base |
| 46 #include <boost/math/special_functions/round.hpp> | |
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47 #include <boost/shared_ptr.hpp> |
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48 |
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49 /** |
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50 * This semaphore is used to limit the number of concurrent HTTP |
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51 * requests on CPU-intensive routes of the REST API, in order to |
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52 * prevent exhaustion of resources (new in Orthanc 1.7.0). |
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53 **/ |
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54 static Orthanc::Semaphore throttlingSemaphore_(4); // TODO => PARAMETER? |
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55 |
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56 |
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57 static const std::string CHECK_REVISIONS = "CheckRevisions"; |
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58 |
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59 static const char* const IGNORE_LENGTH = "ignore-length"; |
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60 static const char* const RECONSTRUCT_FILES = "ReconstructFiles"; |
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61 |
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62 |
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63 namespace Orthanc |
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64 { |
| 4415 | 65 static std::string GetDocumentationSampleResource(ResourceType type) |
| 66 { | |
| 67 switch (type) | |
| 68 { | |
| 69 case Orthanc::ResourceType_Instance: | |
| 70 return "https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2"; | |
| 71 break; | |
| 72 | |
| 73 case Orthanc::ResourceType_Series: | |
| 74 return "https://demo.orthanc-server.com/series/37836232-d13a2350-fa1dedc5-962b31aa-010f8e52"; | |
| 75 break; | |
| 76 | |
| 77 case Orthanc::ResourceType_Study: | |
| 78 return "https://demo.orthanc-server.com/studies/27f7126f-4f66fb14-03f4081b-f9341db2-53925988"; | |
| 79 break; | |
| 80 | |
| 81 case Orthanc::ResourceType_Patient: | |
| 82 return "https://demo.orthanc-server.com/patients/46e6332c-677825b6-202fcf7c-f787bc5f-7b07c382"; | |
| 83 break; | |
| 84 | |
| 85 default: | |
| 86 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 87 } | |
| 88 } | |
| 89 | |
| 90 | |
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91 static void AnswerDicomAsJson(RestApiCall& call, |
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92 const Json::Value& dicom, |
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93 DicomToJsonFormat mode) |
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94 { |
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95 if (mode != DicomToJsonFormat_Full) |
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96 { |
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97 Json::Value simplified; |
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98 Toolbox::SimplifyDicomAsJson(simplified, dicom, mode); |
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99 call.GetOutput().AnswerJson(simplified); |
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100 } |
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101 else |
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102 { |
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103 call.GetOutput().AnswerJson(dicom); |
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104 } |
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105 } |
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106 |
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107 |
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108 static void ParseSetOfTags(std::set<DicomTag>& target, |
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109 const RestApiGetCall& call, |
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110 const std::string& argument) |
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111 { |
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112 target.clear(); |
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113 |
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114 if (call.HasArgument(argument)) |
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115 { |
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116 std::vector<std::string> tags; |
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117 Toolbox::TokenizeString(tags, call.GetArgument(argument, ""), ','); |
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118 |
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119 for (size_t i = 0; i < tags.size(); i++) |
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120 { |
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121 target.insert(FromDcmtkBridge::ParseTag(tags[i])); |
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122 } |
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123 } |
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124 } |
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125 |
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126 |
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127 // List all the patients, studies, series or instances ---------------------- |
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128 |
| 1354 | 129 static void AnswerListOfResources(RestApiOutput& output, |
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130 ServerContext& context, |
| 1354 | 131 const std::list<std::string>& resources, |
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132 const std::map<std::string, std::string>& instancesIds, // optional: the id of an instance for each found resource. |
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133 const std::map<std::string, boost::shared_ptr<DicomMap> >& resourcesMainDicomTags, // optional: all tags read from DB for a resource (current level and upper levels) |
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134 const std::map<std::string, boost::shared_ptr<Json::Value> >& resourcesDicomAsJson, // optional: the dicom-as-json for each resource |
| 1354 | 135 ResourceType level, |
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136 bool expand, |
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137 DicomToJsonFormat format, |
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138 const std::set<DicomTag>& requestedTags, |
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139 bool allowStorageAccess) |
| 1354 | 140 { |
| 141 Json::Value answer = Json::arrayValue; | |
| 142 | |
| 143 for (std::list<std::string>::const_iterator | |
| 1384 | 144 resource = resources.begin(); resource != resources.end(); ++resource) |
| 1354 | 145 { |
| 146 if (expand) | |
| 147 { | |
| 4554 | 148 Json::Value expanded; |
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149 |
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150 std::map<std::string, std::string>::const_iterator instanceId = instancesIds.find(*resource); |
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151 if (instanceId != instancesIds.end()) // if it is found in instancesIds, it is also in resourcesDicomAsJson and mainDicomTags |
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152 { |
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153 // reuse data already collected before (e.g during lookup) |
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154 std::map<std::string, boost::shared_ptr<DicomMap> >::const_iterator mainDicomTags = resourcesMainDicomTags.find(*resource); |
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155 std::map<std::string, boost::shared_ptr<Json::Value> >::const_iterator dicomAsJson = resourcesDicomAsJson.find(*resource); |
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156 |
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157 context.ExpandResource(expanded, *resource, |
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158 *(mainDicomTags->second.get()), |
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159 instanceId->second, |
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160 dicomAsJson->second.get(), |
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161 level, format, requestedTags, allowStorageAccess); |
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162 } |
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163 else |
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164 { |
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165 context.ExpandResource(expanded, *resource, level, format, requestedTags, allowStorageAccess); |
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166 } |
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167 |
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168 if (expanded.type() == Json::objectValue) |
| 1354 | 169 { |
| 4554 | 170 answer.append(expanded); |
| 1354 | 171 } |
| 172 } | |
| 173 else | |
| 174 { | |
| 175 answer.append(*resource); | |
| 176 } | |
| 177 } | |
| 178 | |
| 179 output.AnswerJson(answer); | |
| 180 } | |
| 181 | |
| 182 | |
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183 static void AnswerListOfResources(RestApiOutput& output, |
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184 ServerContext& context, |
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185 const std::list<std::string>& resources, |
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186 ResourceType level, |
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187 bool expand, |
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188 DicomToJsonFormat format, |
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189 const std::set<DicomTag>& requestedTags, |
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190 bool allowStorageAccess) |
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191 { |
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192 std::map<std::string, std::string> unusedInstancesIds; |
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193 std::map<std::string, boost::shared_ptr<DicomMap> > unusedResourcesMainDicomTags; |
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194 std::map<std::string, boost::shared_ptr<Json::Value> > unusedResourcesDicomAsJson; |
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195 |
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196 AnswerListOfResources(output, context, resources, unusedInstancesIds, unusedResourcesMainDicomTags, unusedResourcesDicomAsJson, level, expand, format, requestedTags, allowStorageAccess); |
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197 } |
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198 |
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199 |
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200 template <enum ResourceType resourceType> |
| 974 | 201 static void ListResources(RestApiGetCall& call) |
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202 { |
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203 if (call.IsDocumentation()) |
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204 { |
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205 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
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206 OrthancRestApi::DocumentRequestedTags(call); |
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207 |
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208 const std::string resources = GetResourceTypeText(resourceType, true /* plural */, false /* lower case */); |
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209 call.GetDocumentation() |
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210 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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211 .SetSummary("List the available " + resources) |
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212 .SetDescription("List the Orthanc identifiers of all the available DICOM " + resources) |
| 4403 | 213 .SetHttpGetArgument("limit", RestApiCallDocumentation::Type_Number, "Limit the number of results", false) |
| 214 .SetHttpGetArgument("since", RestApiCallDocumentation::Type_Number, "Show only the resources since the provided index", false) | |
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215 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, |
| 4403 | 216 "If present, retrieve detailed information about the individual " + resources, false) |
| 4404 | 217 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " |
| 218 "about the reported " + resources + " (if `expand` argument is provided)") | |
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219 .SetHttpGetSample("https://demo.orthanc-server.com/" + resources + "?since=0&limit=2", true); |
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220 return; |
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221 } |
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222 |
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223 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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224 ServerContext& context = OrthancRestApi::GetContext(call); |
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225 |
| 1354 | 226 std::list<std::string> result; |
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227 |
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228 std::set<DicomTag> requestedTags; |
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229 OrthancRestApi::GetRequestedTags(requestedTags, call); |
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230 |
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231 if (call.HasArgument("limit") || |
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232 call.HasArgument("since")) |
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233 { |
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234 if (!call.HasArgument("limit")) |
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235 { |
| 2955 | 236 throw OrthancException(ErrorCode_BadRequest, |
| 237 "Missing \"limit\" argument for GET request against: " + | |
| 238 call.FlattenUri()); | |
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239 } |
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240 |
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241 if (!call.HasArgument("since")) |
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242 { |
| 2955 | 243 throw OrthancException(ErrorCode_BadRequest, |
| 244 "Missing \"since\" argument for GET request against: " + | |
| 245 call.FlattenUri()); | |
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246 } |
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247 |
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248 size_t since = boost::lexical_cast<size_t>(call.GetArgument("since", "")); |
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249 size_t limit = boost::lexical_cast<size_t>(call.GetArgument("limit", "")); |
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250 index.GetAllUuids(result, resourceType, since, limit); |
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251 } |
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252 else |
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253 { |
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254 index.GetAllUuids(result, resourceType); |
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255 } |
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256 |
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257 AnswerListOfResources(call.GetOutput(), context, result, resourceType, call.HasArgument("expand"), |
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258 OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human), |
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259 requestedTags, |
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260 true /* allowStorageAccess */); |
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261 } |
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262 |
| 4409 | 263 |
| 264 | |
|
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265 template <enum ResourceType resourceType> |
| 974 | 266 static void GetSingleResource(RestApiGetCall& call) |
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267 { |
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268 if (call.IsDocumentation()) |
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269 { |
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270 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
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271 OrthancRestApi::DocumentRequestedTags(call); |
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272 |
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273 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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274 call.GetDocumentation() |
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275 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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276 .SetSummary("Get information about some " + resource) |
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277 .SetDescription("Get detailed information about the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 278 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 4409 | 279 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
| 280 .SetHttpGetSample(GetDocumentationSampleResource(resourceType), true); | |
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281 return; |
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282 } |
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283 |
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284 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
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285 |
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286 std::set<DicomTag> requestedTags; |
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287 OrthancRestApi::GetRequestedTags(requestedTags, call); |
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288 |
| 4554 | 289 Json::Value json; |
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290 if (OrthancRestApi::GetContext(call).ExpandResource( |
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291 json, call.GetUriComponent("id", ""), resourceType, format, requestedTags, true /* allowStorageAccess */)) |
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292 { |
| 4554 | 293 call.GetOutput().AnswerJson(json); |
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294 } |
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295 } |
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296 |
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297 template <enum ResourceType resourceType> |
| 974 | 298 static void DeleteSingleResource(RestApiDeleteCall& call) |
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299 { |
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300 if (call.IsDocumentation()) |
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301 { |
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302 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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303 call.GetDocumentation() |
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304 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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305 .SetSummary("Delete some " + resource) |
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306 .SetDescription("Delete the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 307 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); |
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308 return; |
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309 } |
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310 |
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311 Json::Value remainingAncestor; |
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312 if (OrthancRestApi::GetContext(call).DeleteResource(remainingAncestor, call.GetUriComponent("id", ""), resourceType)) |
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313 { |
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314 call.GetOutput().AnswerJson(remainingAncestor); |
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315 } |
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316 } |
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317 |
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318 |
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319 // Get information about a single patient ----------------------------------- |
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320 |
| 974 | 321 static void IsProtectedPatient(RestApiGetCall& call) |
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322 { |
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323 if (call.IsDocumentation()) |
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324 { |
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325 call.GetDocumentation() |
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326 .SetTag("Patients") |
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327 .SetSummary("Is the patient protected against recycling?") |
| 4404 | 328 .SetUriArgument("id", "Orthanc identifier of the patient of interest") |
| 4403 | 329 .AddAnswerType(MimeType_PlainText, "`1` if protected, `0` if not protected"); |
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330 return; |
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331 } |
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332 |
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333 std::string publicId = call.GetUriComponent("id", ""); |
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334 bool isProtected = OrthancRestApi::GetIndex(call).IsProtectedPatient(publicId); |
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335 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", MimeType_PlainText); |
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336 } |
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337 |
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338 |
| 974 | 339 static void SetPatientProtection(RestApiPutCall& call) |
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340 { |
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341 if (call.IsDocumentation()) |
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342 { |
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343 call.GetDocumentation() |
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344 .SetTag("Patients") |
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345 .SetSummary("Protect one patient against recycling") |
| 4403 | 346 .SetDescription("Check out configuration options `MaximumStorageSize` and `MaximumPatientCount`") |
| 4404 | 347 .SetUriArgument("id", "Orthanc identifier of the patient of interest"); |
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348 return; |
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349 } |
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350 |
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351 ServerContext& context = OrthancRestApi::GetContext(call); |
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352 |
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353 std::string publicId = call.GetUriComponent("id", ""); |
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354 |
|
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355 context.GetIndex().SetProtectedPatient(publicId, call.ParseBooleanBody()); |
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356 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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357 } |
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358 |
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359 |
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360 // Get information about a single instance ---------------------------------- |
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361 |
| 974 | 362 static void GetInstanceFile(RestApiGetCall& call) |
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363 { |
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364 if (call.IsDocumentation()) |
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365 { |
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366 call.GetDocumentation() |
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367 .SetTag("Instances") |
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368 .SetSummary("Download DICOM") |
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369 .SetDescription("Download one DICOM instance") |
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370 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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371 .SetHttpHeader("Accept", "This HTTP header can be set to retrieve the DICOM instance in DICOMweb format") |
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372 .AddAnswerType(MimeType_Dicom, "The DICOM instance") |
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373 .AddAnswerType(MimeType_DicomWebJson, "The DICOM instance, in DICOMweb JSON format") |
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374 .AddAnswerType(MimeType_DicomWebXml, "The DICOM instance, in DICOMweb XML format"); |
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375 return; |
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376 } |
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377 |
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378 ServerContext& context = OrthancRestApi::GetContext(call); |
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379 |
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380 std::string publicId = call.GetUriComponent("id", ""); |
|
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381 |
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382 HttpToolbox::Arguments::const_iterator accept = call.GetHttpHeaders().find("accept"); |
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383 if (accept != call.GetHttpHeaders().end()) |
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384 { |
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385 // New in Orthanc 1.5.4 |
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386 try |
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387 { |
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388 MimeType mime = StringToMimeType(accept->second.c_str()); |
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389 |
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390 if (mime == MimeType_DicomWebJson || |
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391 mime == MimeType_DicomWebXml) |
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392 { |
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393 DicomWebJsonVisitor visitor; |
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394 |
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395 { |
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396 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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397 locker.GetDicom().Apply(visitor); |
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398 } |
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399 |
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400 if (mime == MimeType_DicomWebJson) |
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401 { |
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402 std::string s = visitor.GetResult().toStyledString(); |
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403 call.GetOutput().AnswerBuffer(s, MimeType_DicomWebJson); |
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404 } |
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405 else |
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406 { |
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407 std::string xml; |
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408 visitor.FormatXml(xml); |
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409 call.GetOutput().AnswerBuffer(xml, MimeType_DicomWebXml); |
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410 } |
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411 |
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412 return; |
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413 } |
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414 } |
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415 catch (OrthancException&) |
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416 { |
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417 } |
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418 } |
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419 |
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420 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_Dicom); |
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421 } |
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422 |
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423 |
| 974 | 424 static void ExportInstanceFile(RestApiPostCall& call) |
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425 { |
| 4421 | 426 if (call.IsDocumentation()) |
| 427 { | |
| 428 call.GetDocumentation() | |
| 429 .SetTag("Instances") | |
| 430 .SetSummary("Write DICOM onto filesystem") | |
| 431 .SetDescription("Write the DICOM file onto the filesystem where Orthanc is running") | |
| 432 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 433 .AddRequestType(MimeType_PlainText, "Target path on the filesystem"); | |
| 434 return; | |
| 435 } | |
| 436 | |
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437 ServerContext& context = OrthancRestApi::GetContext(call); |
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438 |
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439 std::string publicId = call.GetUriComponent("id", ""); |
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440 |
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441 std::string dicom; |
| 2124 | 442 context.ReadDicom(dicom, publicId); |
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443 |
|
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444 std::string target; |
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445 call.BodyToString(target); |
| 2140 | 446 SystemToolbox::WriteFile(dicom, target); |
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447 |
|
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448 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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449 } |
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450 |
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451 |
|
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452 template <DicomToJsonFormat format> |
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453 static void GetInstanceTagsInternal(RestApiGetCall& call) |
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454 { |
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455 ServerContext& context = OrthancRestApi::GetContext(call); |
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456 |
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457 std::string publicId = call.GetUriComponent("id", ""); |
|
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458 |
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459 std::set<DicomTag> ignoreTagLength; |
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460 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
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461 |
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462 if (format != DicomToJsonFormat_Full || |
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463 !ignoreTagLength.empty()) |
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464 { |
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465 Json::Value full; |
|
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466 context.ReadDicomAsJson(full, publicId, ignoreTagLength); |
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467 AnswerDicomAsJson(call, full, format); |
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468 } |
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469 else |
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470 { |
|
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471 // This path allows one to avoid the JSON decoding if no |
|
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472 // simplification is asked, and if no "ignore-length" argument |
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473 // is present |
|
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474 Json::Value full; |
| 2127 | 475 context.ReadDicomAsJson(full, publicId); |
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476 call.GetOutput().AnswerJson(full); |
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477 } |
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478 } |
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479 |
|
964
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480 |
|
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481 static void GetInstanceTags(RestApiGetCall& call) |
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482 { |
| 4404 | 483 if (call.IsDocumentation()) |
| 484 { | |
|
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485 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
| 4404 | 486 call.GetDocumentation() |
| 487 .SetTag("Instances") | |
| 488 .SetSummary("Get DICOM tags") | |
| 489 .SetDescription("Get the DICOM tags in the specified format. By default, the `full` format is used, which " | |
| 490 "combines hexadecimal tags with human-readable description.") | |
| 491 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
|
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492 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
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493 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
| 4404 | 494 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
| 4415 | 495 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/tags", 10); |
| 4404 | 496 return; |
| 497 } | |
| 498 | |
|
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499 switch (OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)) |
|
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500 { |
|
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|
501 case DicomToJsonFormat_Human: |
|
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502 GetInstanceTagsInternal<DicomToJsonFormat_Human>(call); |
|
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503 break; |
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504 |
|
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New option "?short" to list DICOM tags using their hexadecimal ID
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|
505 case DicomToJsonFormat_Short: |
|
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506 GetInstanceTagsInternal<DicomToJsonFormat_Short>(call); |
|
2622
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507 break; |
|
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New option "?short" to list DICOM tags using their hexadecimal ID
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508 |
|
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New option "?short" to list DICOM tags using their hexadecimal ID
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changeset
|
509 case DicomToJsonFormat_Full: |
|
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|
510 GetInstanceTagsInternal<DicomToJsonFormat_Full>(call); |
|
2622
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New option "?short" to list DICOM tags using their hexadecimal ID
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changeset
|
511 break; |
|
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New option "?short" to list DICOM tags using their hexadecimal ID
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changeset
|
512 |
|
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New option "?short" to list DICOM tags using their hexadecimal ID
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513 default: |
|
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New option "?short" to list DICOM tags using their hexadecimal ID
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|
514 throw OrthancException(ErrorCode_InternalError); |
|
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515 } |
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516 } |
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517 |
|
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518 |
|
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519 static void GetInstanceSimplifiedTags(RestApiGetCall& call) |
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520 { |
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521 if (call.IsDocumentation()) |
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522 { |
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523 call.GetDocumentation() |
|
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524 .SetTag("Instances") |
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525 .SetSummary("Get human-readable tags") |
|
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526 .SetDescription("Get the DICOM tags in human-readable format (same as the `/instances/{id}/tags?simplify` route)") |
|
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Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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527 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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528 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
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529 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
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Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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530 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
|
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changeset
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531 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/simplified-tags", 10); |
|
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532 return; |
|
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Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
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533 } |
|
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|
534 else |
|
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535 { |
|
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changeset
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536 GetInstanceTagsInternal<DicomToJsonFormat_Human>(call); |
|
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537 } |
|
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538 } |
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changeset
|
539 |
|
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540 |
| 974 | 541 static void ListFrames(RestApiGetCall& call) |
|
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542 { |
| 4414 | 543 if (call.IsDocumentation()) |
| 544 { | |
| 545 call.GetDocumentation() | |
| 546 .SetTag("Instances") | |
| 547 .SetSummary("List available frames") | |
| 548 .SetDescription("List the frames that are available in the DICOM instance of interest") | |
| 549 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 550 .AddAnswerType(MimeType_Json, "The list of the indices of the available frames") | |
| 551 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/frames", true); | |
| 552 return; | |
| 553 } | |
| 554 | |
|
1950
533ff46e944b
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diff
changeset
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555 std::string publicId = call.GetUriComponent("id", ""); |
|
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|
556 |
|
1950
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return a single raw frame from DICOM videos
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557 unsigned int numberOfFrames; |
|
533ff46e944b
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558 |
|
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559 { |
|
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|
560 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
|
533ff46e944b
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561 numberOfFrames = locker.GetDicom().GetFramesCount(); |
|
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562 } |
|
1950
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563 |
|
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return a single raw frame from DICOM videos
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diff
changeset
|
564 Json::Value result = Json::arrayValue; |
|
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diff
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|
565 for (unsigned int i = 0; i < numberOfFrames; i++) |
|
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566 { |
|
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567 result.append(i); |
|
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568 } |
|
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569 |
|
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diff
changeset
|
570 call.GetOutput().AnswerJson(result); |
|
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diff
changeset
|
571 } |
|
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|
572 |
|
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changeset
|
573 |
|
1784
2dbf25006f88
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changeset
|
574 namespace |
|
1781
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AcceptMediaDispatcher bootstrap
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1773
diff
changeset
|
575 { |
|
1784
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576 class ImageToEncode |
|
2dbf25006f88
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577 { |
|
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578 private: |
|
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|
579 std::unique_ptr<ImageAccessor>& image_; |
|
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diff
changeset
|
580 ImageExtractionMode mode_; |
|
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|
581 bool invert_; |
|
2908
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|
582 MimeType format_; |
|
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Refactoring leading to speedups with custom image decoders
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|
583 std::string answer_; |
|
1784
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584 |
|
2dbf25006f88
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|
585 public: |
|
3712
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|
586 ImageToEncode(std::unique_ptr<ImageAccessor>& image, |
|
2281
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changeset
|
587 ImageExtractionMode mode, |
|
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|
588 bool invert) : |
|
1902
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Refactoring leading to speedups with custom image decoders
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diff
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|
589 image_(image), |
|
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changeset
|
590 mode_(mode), |
| 4205 | 591 invert_(invert), |
| 592 format_(MimeType_Binary) | |
|
1784
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|
593 { |
|
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|
594 } |
|
2dbf25006f88
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changeset
|
595 |
|
1902
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Refactoring leading to speedups with custom image decoders
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|
596 void Answer(RestApiOutput& output) |
|
1784
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changeset
|
597 { |
|
1902
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diff
changeset
|
598 output.AnswerBuffer(answer_, format_); |
|
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|
599 } |
|
2dbf25006f88
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changeset
|
600 |
|
1902
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Refactoring leading to speedups with custom image decoders
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diff
changeset
|
601 void EncodeUsingPng() |
|
1784
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|
602 { |
|
2908
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|
603 format_ = MimeType_Png; |
|
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|
604 DicomImageDecoder::ExtractPngImage(answer_, image_, mode_, invert_); |
|
1784
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|
605 } |
|
2dbf25006f88
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changeset
|
606 |
|
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607 void EncodeUsingPam() |
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608 { |
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609 format_ = MimeType_Pam; |
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610 DicomImageDecoder::ExtractPamImage(answer_, image_, mode_, invert_); |
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611 } |
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612 |
|
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613 void EncodeUsingJpeg(uint8_t quality) |
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614 { |
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615 format_ = MimeType_Jpeg; |
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616 DicomImageDecoder::ExtractJpegImage(answer_, image_, mode_, invert_, quality); |
|
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617 } |
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618 }; |
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619 |
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620 class EncodePng : public HttpContentNegociation::IHandler |
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621 { |
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622 private: |
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623 ImageToEncode& image_; |
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624 |
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625 public: |
| 4205 | 626 explicit EncodePng(ImageToEncode& image) : image_(image) |
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627 { |
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628 } |
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629 |
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630 virtual void Handle(const std::string& type, |
| 4205 | 631 const std::string& subtype) ORTHANC_OVERRIDE |
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632 { |
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633 assert(type == "image"); |
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634 assert(subtype == "png"); |
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635 image_.EncodeUsingPng(); |
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636 } |
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637 }; |
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638 |
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639 class EncodePam : public HttpContentNegociation::IHandler |
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640 { |
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641 private: |
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642 ImageToEncode& image_; |
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643 |
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644 public: |
| 4205 | 645 explicit EncodePam(ImageToEncode& image) : image_(image) |
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646 { |
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647 } |
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648 |
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649 virtual void Handle(const std::string& type, |
| 4205 | 650 const std::string& subtype) ORTHANC_OVERRIDE |
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651 { |
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652 assert(type == "image"); |
| 2780 | 653 assert(subtype == "x-portable-arbitrarymap"); |
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654 image_.EncodeUsingPam(); |
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655 } |
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656 }; |
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657 |
|
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658 class EncodeJpeg : public HttpContentNegociation::IHandler |
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659 { |
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660 private: |
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661 ImageToEncode& image_; |
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662 unsigned int quality_; |
|
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663 |
|
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664 public: |
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665 EncodeJpeg(ImageToEncode& image, |
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666 const RestApiGetCall& call) : |
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667 image_(image) |
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668 { |
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669 std::string v = call.GetArgument("quality", "90" /* default JPEG quality */); |
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670 bool ok = false; |
|
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671 |
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672 try |
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673 { |
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674 quality_ = boost::lexical_cast<unsigned int>(v); |
| 1847 | 675 ok = (quality_ >= 1 && quality_ <= 100); |
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676 } |
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677 catch (boost::bad_lexical_cast&) |
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678 { |
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679 } |
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680 |
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681 if (!ok) |
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682 { |
| 2955 | 683 throw OrthancException( |
| 684 ErrorCode_BadRequest, | |
| 685 "Bad quality for a JPEG encoding (must be a number between 0 and 100): " + v); | |
|
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686 } |
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687 } |
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688 |
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689 virtual void Handle(const std::string& type, |
| 4205 | 690 const std::string& subtype) ORTHANC_OVERRIDE |
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691 { |
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692 assert(type == "image"); |
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693 assert(subtype == "jpeg"); |
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694 image_.EncodeUsingJpeg(quality_); |
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695 } |
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696 }; |
|
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697 } |
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698 |
|
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|
699 |
|
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700 namespace |
|
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701 { |
|
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702 class IDecodedFrameHandler : public boost::noncopyable |
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703 { |
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704 public: |
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705 virtual ~IDecodedFrameHandler() |
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706 { |
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707 } |
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708 |
|
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709 // "dicom" is non-NULL iff. "RequiresDicomTags() == true" |
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710 virtual void Handle(RestApiGetCall& call, |
|
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711 std::unique_ptr<ImageAccessor>& decoded, |
|
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712 const ParsedDicomFile* dicom, |
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713 unsigned int frame) = 0; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
714 |
|
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skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
715 virtual bool RequiresDicomTags() const = 0; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
716 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
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|
717 static void Apply(RestApiGetCall& call, |
|
4406
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|
718 IDecodedFrameHandler& handler, |
|
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diff
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|
719 ImageExtractionMode mode /* for generation of documentation */, |
|
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documenting generation of images
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|
720 bool isRendered /* for generation of documentation */) |
|
3683
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parents:
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|
721 { |
|
4406
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|
722 if (call.IsDocumentation()) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
723 { |
|
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parents:
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diff
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|
724 std::string m; |
|
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changeset
|
725 if (!isRendered) |
|
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parents:
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|
726 { |
|
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parents:
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diff
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|
727 switch (mode) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
728 { |
|
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parents:
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diff
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|
729 case ImageExtractionMode_Preview: |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
730 m = "preview"; |
|
4cb9f66a1c7c
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|
731 break; |
|
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documenting generation of images
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parents:
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diff
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|
732 case ImageExtractionMode_UInt8: |
|
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parents:
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|
733 m = "uint8"; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
734 break; |
|
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|
735 case ImageExtractionMode_UInt16: |
|
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parents:
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|
736 m = "uint16"; |
|
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changeset
|
737 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
738 case ImageExtractionMode_Int16: |
|
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parents:
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|
739 m = "int16"; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
740 break; |
|
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documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
741 default: |
|
4cb9f66a1c7c
documenting generation of images
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parents:
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diff
changeset
|
742 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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parents:
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diff
changeset
|
743 } |
|
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parents:
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diff
changeset
|
744 } |
|
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documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
745 |
|
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parents:
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diff
changeset
|
746 std::string description; |
|
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diff
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|
747 std::string verb = (isRendered ? "Render" : "Decode"); |
|
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parents:
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diff
changeset
|
748 |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
749 if (call.HasUriComponent("frame")) |
|
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parents:
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diff
changeset
|
750 { |
|
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parents:
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diff
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|
751 description = verb + " one frame of interest from the given DICOM instance."; |
|
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diff
changeset
|
752 call.GetDocumentation() |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
753 .SetSummary(verb + " a frame" + (m.empty() ? "" : " (" + m + ")")) |
|
4cb9f66a1c7c
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parents:
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changeset
|
754 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
|
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parents:
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diff
changeset
|
755 } |
|
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changeset
|
756 else |
|
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changeset
|
757 { |
|
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diff
changeset
|
758 description = verb + " the first frame of the given DICOM instance."; |
|
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diff
changeset
|
759 call.GetDocumentation() |
|
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diff
changeset
|
760 .SetSummary(verb + " an image" + (m.empty() ? "" : " (" + m + ")")); |
|
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changeset
|
761 } |
|
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parents:
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diff
changeset
|
762 |
|
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diff
changeset
|
763 if (isRendered) |
|
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diff
changeset
|
764 { |
|
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parents:
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diff
changeset
|
765 description += (" This function takes scaling into account (`RescaleSlope` and `RescaleIntercept` tags), " |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
766 "as well as the default windowing stored in the DICOM file (`WindowCenter` and `WindowWidth`tags), " |
|
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|
767 "and can be used to resize the resulting image. Color images are not affected by windowing."); |
|
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|
768 call.GetDocumentation() |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
769 .SetHttpGetArgument("window-center",RestApiCallDocumentation::Type_Number, "Windowing center", false) |
|
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diff
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|
770 .SetHttpGetArgument("window-width",RestApiCallDocumentation::Type_Number, "Windowing width", false) |
|
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parents:
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diff
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|
771 .SetHttpGetArgument("width",RestApiCallDocumentation::Type_Number, "Width of the resized image", false) |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
772 .SetHttpGetArgument("height",RestApiCallDocumentation::Type_Number, "Height of the resized image", false) |
|
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parents:
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diff
changeset
|
773 .SetHttpGetArgument("smooth",RestApiCallDocumentation::Type_Boolean, "Whether to smooth image on resize", false); |
|
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parents:
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diff
changeset
|
774 } |
|
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parents:
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diff
changeset
|
775 else |
|
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diff
changeset
|
776 { |
|
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diff
changeset
|
777 switch (mode) |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
778 { |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
779 case ImageExtractionMode_Preview: |
|
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parents:
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diff
changeset
|
780 description += " The full dynamic range of grayscale images is rescaled to the [0,255] range."; |
|
4cb9f66a1c7c
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diff
changeset
|
781 break; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
782 case ImageExtractionMode_UInt8: |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
783 description += " Pixels of grayscale images are truncated to the [0,255] range."; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
784 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
785 case ImageExtractionMode_UInt16: |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
786 description += " Pixels of grayscale images are truncated to the [0,65535] range."; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
787 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
788 case ImageExtractionMode_Int16: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
789 description += (" Pixels of grayscale images are truncated to the [-32768,32767] range. " |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
790 "Negative values must be interpreted according to two's complement."); |
|
4cb9f66a1c7c
documenting generation of images
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diff
changeset
|
791 break; |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
792 default: |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
793 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
4cb9f66a1c7c
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diff
changeset
|
794 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
795 } |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
796 |
|
4cb9f66a1c7c
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diff
changeset
|
797 call.GetDocumentation() |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
798 .SetTag("Instances") |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
799 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
800 .SetHttpGetArgument("quality", RestApiCallDocumentation::Type_Number, "Quality for JPEG images (between 1 and 100, defaults to 90)", false) |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
801 .SetHttpGetArgument("returnUnsupportedImage", RestApiCallDocumentation::Type_Boolean, "Returns an unsupported.png placeholder image if unable to provide the image instead of returning a 415 HTTP error (defaults to false)", false) |
|
4406
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parents:
4405
diff
changeset
|
802 .SetHttpHeader("Accept", "Format of the resulting image. Can be `image/png` (default), `image/jpeg` or `image/x-portable-arbitrarymap`") |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
803 .AddAnswerType(MimeType_Png, "PNG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
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4405
diff
changeset
|
804 .AddAnswerType(MimeType_Jpeg, "JPEG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
805 .AddAnswerType(MimeType_Pam, "PAM image (Portable Arbitrary Map)") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
806 .SetDescription(description); |
|
4cb9f66a1c7c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
807 |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
808 return; |
|
4cb9f66a1c7c
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parents:
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diff
changeset
|
809 } |
|
4cb9f66a1c7c
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parents:
4405
diff
changeset
|
810 |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
811 ServerContext& context = OrthancRestApi::GetContext(call); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
812 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
3640
diff
changeset
|
813 std::string frameId = call.GetUriComponent("frame", "0"); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
814 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
815 unsigned int frame; |
|
12253ddefe5a
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parents:
3640
diff
changeset
|
816 try |
|
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
817 { |
|
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
818 frame = boost::lexical_cast<unsigned int>(frameId); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
819 } |
|
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
820 catch (boost::bad_lexical_cast&) |
|
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diff
changeset
|
821 { |
|
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skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
822 return; |
|
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changeset
|
823 } |
|
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diff
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|
824 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
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parents:
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diff
changeset
|
825 std::unique_ptr<ImageAccessor> decoded; |
|
3683
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|
826 |
|
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changeset
|
827 try |
|
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diff
changeset
|
828 { |
|
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diff
changeset
|
829 std::string publicId = call.GetUriComponent("id", ""); |
|
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parents:
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diff
changeset
|
830 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
831 decoded.reset(context.DecodeDicomFrame(publicId, frame)); |
|
3683
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changeset
|
832 |
|
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|
833 if (decoded.get() == NULL) |
|
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|
834 { |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
835 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
836 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
837 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
838 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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parents:
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diff
changeset
|
839 if (handler.RequiresDicomTags()) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
840 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
841 /** |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
842 * Retrieve a summary of the DICOM tags, which is |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
843 * necessary to deal with MONOCHROME1 photometric |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
844 * interpretation, and with windowing parameters. |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
845 **/ |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
846 ServerContext::DicomCacheLocker locker(context, publicId); |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
847 handler.Handle(call, decoded, &locker.GetDicom(), frame); |
|
4769
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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parents:
4722
diff
changeset
|
848 } |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
849 else |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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parents:
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diff
changeset
|
850 { |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
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diff
changeset
|
851 handler.Handle(call, decoded, NULL, frame); |
|
3683
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diff
changeset
|
852 } |
|
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changeset
|
853 } |
|
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diff
changeset
|
854 catch (OrthancException& e) |
|
12253ddefe5a
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parents:
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diff
changeset
|
855 { |
|
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diff
changeset
|
856 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange || |
|
12253ddefe5a
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diff
changeset
|
857 e.GetErrorCode() == ErrorCode_UnknownResource) |
|
12253ddefe5a
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diff
changeset
|
858 { |
|
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diff
changeset
|
859 // The frame number is out of the range for this DICOM |
|
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skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
860 // instance, the resource is not existent |
|
12253ddefe5a
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diff
changeset
|
861 } |
|
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skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
862 else |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
863 { |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
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4777
diff
changeset
|
864 if (call.HasArgument("returnUnsupportedImage")) |
|
3683
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skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
865 { |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
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diff
changeset
|
866 std::string root = ""; |
|
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new option returnUnsupportedImage for /preview & /rendered routes
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4777
diff
changeset
|
867 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
|
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diff
changeset
|
868 { |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
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diff
changeset
|
869 root += "../"; |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
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4777
diff
changeset
|
870 } |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
871 |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
872 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
|
3683
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diff
changeset
|
873 } |
|
4804
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
874 else |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
875 { |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
876 call.GetOutput().SignalError(HttpStatus_415_UnsupportedMediaType); |
|
ae643f664628
new option returnUnsupportedImage for /preview & /rendered routes
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
877 } |
|
3683
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skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
878 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
879 return; |
|
12253ddefe5a
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diff
changeset
|
880 } |
|
12253ddefe5a
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diff
changeset
|
881 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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diff
changeset
|
882 } |
|
3685
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
883 |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
884 |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
885 static void DefaultHandler(RestApiGetCall& call, |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
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3690
diff
changeset
|
886 std::unique_ptr<ImageAccessor>& decoded, |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
887 ImageExtractionMode mode, |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
888 bool invert) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
889 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
890 ImageToEncode image(decoded, mode, invert); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
891 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
892 HttpContentNegociation negociation; |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
893 EncodePng png(image); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
894 negociation.Register(MIME_PNG, png); |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
895 |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
896 EncodeJpeg jpeg(image, call); |
|
2cc34837d694
rendering of RGB24
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3683
diff
changeset
|
897 negociation.Register(MIME_JPEG, jpeg); |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
898 |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
899 EncodePam pam(image); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
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3683
diff
changeset
|
900 negociation.Register(MIME_PAM, pam); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
901 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
902 if (negociation.Apply(call.GetHttpHeaders())) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
903 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
904 image.Answer(call.GetOutput()); |
|
2cc34837d694
rendering of RGB24
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3683
diff
changeset
|
905 } |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
906 } |
|
3683
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skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
907 }; |
|
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
908 |
|
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
909 |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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3640
diff
changeset
|
910 class GetImageHandler : public IDecodedFrameHandler |
|
12253ddefe5a
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diff
changeset
|
911 { |
|
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diff
changeset
|
912 private: |
|
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diff
changeset
|
913 ImageExtractionMode mode_; |
|
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diff
changeset
|
914 |
|
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skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
915 public: |
| 4205 | 916 explicit GetImageHandler(ImageExtractionMode mode) : |
|
3683
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diff
changeset
|
917 mode_(mode) |
|
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diff
changeset
|
918 { |
|
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diff
changeset
|
919 } |
|
12253ddefe5a
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diff
changeset
|
920 |
|
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
921 virtual void Handle(RestApiGetCall& call, |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
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parents:
3690
diff
changeset
|
922 std::unique_ptr<ImageAccessor>& decoded, |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4769
diff
changeset
|
923 const ParsedDicomFile* dicom, |
|
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
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diff
changeset
|
924 unsigned int frame) ORTHANC_OVERRIDE |
|
3683
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diff
changeset
|
925 { |
|
12253ddefe5a
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diff
changeset
|
926 bool invert = false; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
927 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
928 if (mode_ == ImageExtractionMode_Preview) |
|
12253ddefe5a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
929 { |
|
4769
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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changeset
|
930 if (dicom == NULL) |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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diff
changeset
|
931 { |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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diff
changeset
|
932 throw OrthancException(ErrorCode_InternalError); |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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parents:
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diff
changeset
|
933 } |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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diff
changeset
|
934 |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
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diff
changeset
|
935 DicomMap tags; |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
936 OrthancConfiguration::DefaultExtractDicomSummary(tags, *dicom); |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
937 |
|
9da6ca57a977
IDecodedFrameHandler can access full ParsedDicomFile instead of the DicomMap summary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
938 DicomImageInformation info(tags); |
|
3683
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|
939 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
|
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diff
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|
940 } |
|
3600
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/instances/{id}/preview route now takes the windowing into account
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|
941 |
|
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changeset
|
942 DefaultHandler(call, decoded, mode_, invert); |
|
3683
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|
943 } |
|
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|
944 |
|
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diff
changeset
|
945 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
|
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|
946 { |
|
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|
947 return mode_ == ImageExtractionMode_Preview; |
|
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|
948 } |
|
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diff
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|
949 }; |
|
12253ddefe5a
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diff
changeset
|
950 |
|
3600
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/instances/{id}/preview route now takes the windowing into account
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parents:
3203
diff
changeset
|
951 |
|
3683
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diff
changeset
|
952 class RenderedFrameHandler : public IDecodedFrameHandler |
|
3600
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/instances/{id}/preview route now takes the windowing into account
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|
953 { |
|
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changeset
|
954 private: |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
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|
955 static void GetUserArguments(double& windowWidth /* inout */, |
|
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Support detection of windowing and rescale in Philips multiframe images
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|
956 double& windowCenter /* inout */, |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
957 unsigned int& argWidth, |
|
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|
958 unsigned int& argHeight, |
|
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|
959 bool& smooth, |
| 4205 | 960 const RestApiGetCall& call) |
|
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implementation of "/instances/.../rendered" for grayscale images
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|
961 { |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
962 static const char* ARG_WINDOW_CENTER = "window-center"; |
|
a9ce35d67c3c
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parents:
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changeset
|
963 static const char* ARG_WINDOW_WIDTH = "window-width"; |
|
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
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changeset
|
964 static const char* ARG_WIDTH = "width"; |
|
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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|
965 static const char* ARG_HEIGHT = "height"; |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
966 static const char* ARG_SMOOTH = "smooth"; |
|
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
967 |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
968 if (call.HasArgument(ARG_WINDOW_WIDTH) && |
|
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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diff
changeset
|
969 !SerializationToolbox::ParseDouble(windowWidth, call.GetArgument(ARG_WINDOW_WIDTH, ""))) |
|
3685
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diff
changeset
|
970 { |
|
4777
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Support detection of windowing and rescale in Philips multiframe images
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parents:
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diff
changeset
|
971 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
972 "Bad value for argument: " + std::string(ARG_WINDOW_WIDTH)); |
|
3685
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|
973 } |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
974 |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
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diff
changeset
|
975 if (call.HasArgument(ARG_WINDOW_CENTER) && |
|
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
976 !SerializationToolbox::ParseDouble(windowCenter, call.GetArgument(ARG_WINDOW_CENTER, ""))) |
|
3683
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skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
977 { |
|
4777
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
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parents:
4769
diff
changeset
|
978 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3b78ba359db3
Support detection of windowing and rescale in Philips multiframe images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
979 "Bad value for argument: " + std::string(ARG_WINDOW_CENTER)); |
|
3685
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diff
changeset
|
980 } |
|
2cc34837d694
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diff
changeset
|
981 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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changeset
|
982 argWidth = 0; |
|
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
983 argHeight = 0; |
|
3685
2cc34837d694
rendering of RGB24
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diff
changeset
|
984 |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
985 if (call.HasArgument(ARG_WIDTH)) |
|
3685
2cc34837d694
rendering of RGB24
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diff
changeset
|
986 { |
|
2cc34837d694
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diff
changeset
|
987 try |
|
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rendering of RGB24
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parents:
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diff
changeset
|
988 { |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
989 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_WIDTH, "")); |
|
3685
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diff
changeset
|
990 if (tmp < 0) |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
991 { |
|
2cc34837d694
rendering of RGB24
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parents:
3683
diff
changeset
|
992 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
993 "Argument cannot be negative: " + std::string(ARG_WIDTH)); |
|
3685
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parents:
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diff
changeset
|
994 } |
|
2cc34837d694
rendering of RGB24
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parents:
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diff
changeset
|
995 else |
|
2cc34837d694
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parents:
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diff
changeset
|
996 { |
|
3690
a9ce35d67c3c
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diff
changeset
|
997 argWidth = static_cast<unsigned int>(tmp); |
|
3685
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diff
changeset
|
998 } |
|
2cc34837d694
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parents:
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diff
changeset
|
999 } |
|
2cc34837d694
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diff
changeset
|
1000 catch (boost::bad_lexical_cast&) |
|
2cc34837d694
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diff
changeset
|
1001 { |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
1002 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
a9ce35d67c3c
implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1003 "Bad value for argument: " + std::string(ARG_WIDTH)); |
|
3685
2cc34837d694
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diff
changeset
|
1004 } |
|
3683
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parents:
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diff
changeset
|
1005 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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3640
diff
changeset
|
1006 |
|
3690
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diff
changeset
|
1007 if (call.HasArgument(ARG_HEIGHT)) |
|
3685
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diff
changeset
|
1008 { |
|
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changeset
|
1009 try |
|
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diff
changeset
|
1010 { |
|
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diff
changeset
|
1011 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_HEIGHT, "")); |
|
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diff
changeset
|
1012 if (tmp < 0) |
|
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changeset
|
1013 { |
|
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changeset
|
1014 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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changeset
|
1015 "Argument cannot be negative: " + std::string(ARG_HEIGHT)); |
|
3685
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changeset
|
1016 } |
|
2cc34837d694
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changeset
|
1017 else |
|
2cc34837d694
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changeset
|
1018 { |
|
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changeset
|
1019 argHeight = static_cast<unsigned int>(tmp); |
|
3685
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|
1020 } |
|
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changeset
|
1021 } |
|
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changeset
|
1022 catch (boost::bad_lexical_cast&) |
|
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changeset
|
1023 { |
|
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diff
changeset
|
1024 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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diff
changeset
|
1025 "Bad value for argument: " + std::string(ARG_HEIGHT)); |
|
3685
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changeset
|
1026 } |
|
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changeset
|
1027 } |
|
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changeset
|
1028 |
|
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changeset
|
1029 smooth = false; |
|
3685
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changeset
|
1030 |
|
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changeset
|
1031 if (call.HasArgument(ARG_SMOOTH)) |
|
2cc34837d694
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diff
changeset
|
1032 { |
|
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
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4460
diff
changeset
|
1033 smooth = RestApiCall::ParseBoolean(call.GetArgument(ARG_SMOOTH, "")); |
|
3685
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changeset
|
1034 } |
|
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|
1035 } |
|
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|
1036 |
|
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|
1037 |
|
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|
1038 public: |
|
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|
1039 virtual void Handle(RestApiGetCall& call, |
|
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1040 std::unique_ptr<ImageAccessor>& decoded, |
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|
1041 const ParsedDicomFile* dicom, |
|
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|
1042 unsigned int frame) ORTHANC_OVERRIDE |
|
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1043 { |
|
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|
1044 if (dicom == NULL) |
|
9da6ca57a977
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|
1045 { |
|
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|
1046 throw OrthancException(ErrorCode_InternalError); |
|
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|
1047 } |
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|
1048 |
|
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|
1049 PhotometricInterpretation photometric; |
|
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1050 const bool invert = (dicom->LookupPhotometricInterpretation(photometric) && |
|
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|
1051 photometric == PhotometricInterpretation_Monochrome1); |
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1052 |
|
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|
1053 double rescaleIntercept, rescaleSlope, windowCenter, windowWidth; |
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1054 dicom->GetRescale(rescaleIntercept, rescaleSlope, frame); |
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|
1055 dicom->GetDefaultWindowing(windowCenter, windowWidth, frame); |
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|
1056 |
|
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|
1057 unsigned int argWidth, argHeight; |
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|
1058 bool smooth; |
|
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1059 GetUserArguments(windowWidth, windowCenter, argWidth, argHeight, smooth, call); |
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|
1060 |
|
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1061 unsigned int targetWidth = decoded->GetWidth(); |
|
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1062 unsigned int targetHeight = decoded->GetHeight(); |
| 3686 | 1063 |
| 1064 if (decoded->GetWidth() != 0 && | |
| 1065 decoded->GetHeight() != 0) | |
| 1066 { | |
| 1067 float ratio = 1; | |
| 1068 | |
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1069 if (argWidth != 0 && |
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1070 argHeight != 0) |
| 3686 | 1071 { |
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1072 float ratioX = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
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1073 float ratioY = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
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1074 ratio = std::min(ratioX, ratioY); |
| 3686 | 1075 } |
|
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1076 else if (argWidth != 0) |
| 3686 | 1077 { |
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1078 ratio = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
| 3686 | 1079 } |
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1080 else if (argHeight != 0) |
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1081 { |
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1082 ratio = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
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|
1083 } |
|
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|
1084 |
|
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1085 targetWidth = boost::math::iround(ratio * static_cast<float>(decoded->GetWidth())); |
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|
1086 targetHeight = boost::math::iround(ratio * static_cast<float>(decoded->GetHeight())); |
| 3686 | 1087 } |
| 1088 | |
|
5054
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5048
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|
1089 if (decoded->GetFormat() == PixelFormat_RGB24 || decoded->GetFormat() == PixelFormat_RGB48) |
|
3685
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|
1090 { |
|
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|
1091 if (targetWidth == decoded->GetWidth() && |
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1092 targetHeight == decoded->GetHeight()) |
|
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|
1093 { |
|
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1094 DefaultHandler(call, decoded, ImageExtractionMode_Preview, false); |
|
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1095 } |
|
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|
1096 else |
|
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|
1097 { |
|
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|
1098 std::unique_ptr<ImageAccessor> resized( |
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|
1099 new Image(decoded->GetFormat(), targetWidth, targetHeight, false)); |
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|
1100 |
|
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|
1101 if (smooth && |
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|
1102 (targetWidth < decoded->GetWidth() || |
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1103 targetHeight < decoded->GetHeight())) |
|
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1104 { |
|
4065
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diff
changeset
|
1105 ImageProcessing::SmoothGaussian5x5(*decoded, false /* be fast, don't round */); |
|
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1106 } |
|
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|
1107 |
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|
1108 ImageProcessing::Resize(*resized, *decoded); |
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1109 DefaultHandler(call, resized, ImageExtractionMode_Preview, false); |
|
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1110 } |
|
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|
1111 } |
| 3686 | 1112 else |
| 1113 { | |
|
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1114 // Grayscale image: (1) convert to Float32, (2) apply |
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|
1115 // windowing to get a Grayscale8, (3) possibly resize |
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1116 |
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1117 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
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1118 ImageProcessing::Convert(converted, *decoded); |
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1119 |
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1120 // Avoid divisions by zero |
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1121 if (windowWidth <= 1.0f) |
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1122 { |
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1123 windowWidth = 1; |
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1124 } |
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1125 |
|
4834
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1126 if (std::abs(rescaleSlope) <= 0.0001) |
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1127 { |
|
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1128 rescaleSlope = 0.0001; |
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1129 } |
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1130 |
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1131 const double scaling = 255.0 * rescaleSlope / windowWidth; |
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1132 const double offset = (rescaleIntercept - windowCenter + windowWidth / 2.0) / rescaleSlope; |
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1133 |
|
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1134 std::unique_ptr<ImageAccessor> rescaled(new Image(PixelFormat_Grayscale8, decoded->GetWidth(), decoded->GetHeight(), false)); |
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|
1135 ImageProcessing::ShiftScale(*rescaled, converted, static_cast<float>(offset), static_cast<float>(scaling), false); |
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|
1136 |
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|
1137 if (targetWidth == decoded->GetWidth() && |
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1138 targetHeight == decoded->GetHeight()) |
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1139 { |
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1140 DefaultHandler(call, rescaled, ImageExtractionMode_UInt8, invert); |
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1141 } |
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1142 else |
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1143 { |
|
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1144 std::unique_ptr<ImageAccessor> resized( |
|
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1145 new Image(PixelFormat_Grayscale8, targetWidth, targetHeight, false)); |
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1146 |
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1147 if (smooth && |
|
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1148 (targetWidth < decoded->GetWidth() || |
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1149 targetHeight < decoded->GetHeight())) |
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1150 { |
|
4065
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1151 ImageProcessing::SmoothGaussian5x5(*rescaled, false /* be fast, don't round */); |
|
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1152 } |
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1153 |
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1154 ImageProcessing::Resize(*resized, *rescaled); |
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1155 DefaultHandler(call, resized, ImageExtractionMode_UInt8, invert); |
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1156 } |
| 3686 | 1157 } |
|
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1158 } |
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1159 |
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1160 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
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1161 { |
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1162 return true; |
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1163 } |
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1164 }; |
|
3600
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1165 } |
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1166 |
|
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1167 |
|
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|
1168 template <enum ImageExtractionMode mode> |
| 974 | 1169 static void GetImage(RestApiGetCall& call) |
|
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1170 { |
|
3926
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1171 Semaphore::Locker locker(throttlingSemaphore_); |
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1172 |
|
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1173 GetImageHandler handler(mode); |
|
4406
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1174 IDecodedFrameHandler::Apply(call, handler, mode, false /* not rendered */); |
|
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1175 } |
|
1906
d7c1cb559431
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1176 |
|
1826
ac5b0b4e2434
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1177 |
|
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|
1178 static void GetRenderedFrame(RestApiGetCall& call) |
|
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1179 { |
|
3926
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|
1180 Semaphore::Locker locker(throttlingSemaphore_); |
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|
1181 |
|
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|
1182 RenderedFrameHandler handler; |
|
4406
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1183 IDecodedFrameHandler::Apply(call, handler, ImageExtractionMode_Preview /* arbitrary value */, true); |
|
751
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1184 } |
|
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|
1185 |
|
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|
1186 |
|
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1187 static void DocumentSharedNumpy(RestApiGetCall& call) |
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1188 { |
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1189 call.GetDocumentation() |
|
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1190 .SetUriArgument("id", "Orthanc identifier of the DICOM resource of interest") |
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1191 .SetHttpGetArgument("compress", RestApiCallDocumentation::Type_Boolean, "Compress the file as `.npz`", false) |
|
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1192 .SetHttpGetArgument("rescale", RestApiCallDocumentation::Type_Boolean, |
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1193 "On grayscale images, apply the rescaling and return floating-point values", false) |
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1194 .AddAnswerType(MimeType_PlainText, "Numpy file: https://numpy.org/devdocs/reference/generated/numpy.lib.format.html"); |
|
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1195 } |
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1196 |
|
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1197 |
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1198 namespace |
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1199 { |
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1200 class NumpyVisitor : public boost::noncopyable |
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1201 { |
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1202 private: |
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1203 bool rescale_; |
|
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1204 unsigned int depth_; |
|
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|
1205 unsigned int currentDepth_; |
| 4858 | 1206 unsigned int width_; |
|
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1207 unsigned int height_; |
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1208 PixelFormat format_; |
|
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|
1209 ChunkedBuffer buffer_; |
|
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1210 |
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1211 public: |
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1212 NumpyVisitor(unsigned int depth /* can be zero if 2D frame */, |
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1213 bool rescale) : |
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1214 rescale_(rescale), |
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|
1215 depth_(depth), |
| 4858 | 1216 currentDepth_(0), |
| 1217 width_(0), // dummy initialization | |
| 1218 height_(0), // dummy initialization | |
| 1219 format_(PixelFormat_Grayscale8) // dummy initialization | |
|
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1220 { |
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1221 } |
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1222 |
| 4858 | 1223 void WriteFrame(const ParsedDicomFile& dicom, |
|
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1224 unsigned int frame) |
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1225 { |
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1226 std::unique_ptr<ImageAccessor> decoded(dicom.DecodeFrame(frame)); |
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1227 |
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1228 if (decoded.get() == NULL) |
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1229 { |
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1230 throw OrthancException(ErrorCode_NotImplemented, "Cannot decode DICOM instance"); |
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1231 } |
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1232 |
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1233 if (currentDepth_ == 0) |
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1234 { |
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1235 width_ = decoded->GetWidth(); |
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|
1236 height_ = decoded->GetHeight(); |
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1237 format_ = decoded->GetFormat(); |
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1238 } |
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1239 else if (width_ != decoded->GetWidth() || |
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1240 height_ != decoded->GetHeight()) |
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1241 { |
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1242 throw OrthancException(ErrorCode_IncompatibleImageSize, "The size of the frames varies across the instance(s)"); |
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1243 } |
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1244 else if (format_ != decoded->GetFormat()) |
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1245 { |
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|
1246 throw OrthancException(ErrorCode_IncompatibleImageFormat, "The pixel format of the frames varies across the instance(s)"); |
|
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1247 } |
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1248 |
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1249 if (rescale_ && |
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1250 decoded->GetFormat() != PixelFormat_RGB24) |
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1251 { |
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1252 if (currentDepth_ == 0) |
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1253 { |
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|
1254 NumpyWriter::WriteHeader(buffer_, depth_, width_, height_, PixelFormat_Float32); |
|
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1255 } |
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1256 |
|
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|
1257 double rescaleIntercept, rescaleSlope; |
|
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|
1258 dicom.GetRescale(rescaleIntercept, rescaleSlope, frame); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1259 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1260 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1261 ImageProcessing::Convert(converted, *decoded); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1262 ImageProcessing::ShiftScale2(converted, static_cast<float>(rescaleIntercept), static_cast<float>(rescaleSlope), false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1263 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1264 NumpyWriter::WritePixels(buffer_, converted); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1265 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1266 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1267 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1268 if (currentDepth_ == 0) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1269 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1270 NumpyWriter::WriteHeader(buffer_, depth_, width_, height_, format_); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1271 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1272 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1273 NumpyWriter::WritePixels(buffer_, *decoded); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1274 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1275 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1276 currentDepth_ ++; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1277 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1278 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1279 void Answer(RestApiOutput& output, |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1280 bool compress) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1281 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1282 if ((depth_ == 0 && currentDepth_ != 1) || |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1283 (depth_ != 0 && currentDepth_ != depth_)) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1284 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1285 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1286 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1287 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1288 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1289 std::string answer; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1290 NumpyWriter::Finalize(answer, buffer_, compress); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1291 output.AnswerBuffer(answer, MimeType_Binary); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1292 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1293 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1294 }; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1295 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1296 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1297 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1298 static void GetNumpyFrame(RestApiGetCall& call) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1299 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1300 if (call.IsDocumentation()) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1301 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1302 DocumentSharedNumpy(call); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1303 call.GetDocumentation() |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1304 .SetTag("Instances") |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1305 .SetSummary("Decode frame for numpy") |
|
4836
ec1e9571b645
document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4834
diff
changeset
|
1306 .SetDescription("Decode one frame of interest from the given DICOM instance, for use with numpy in Python. " |
|
ec1e9571b645
document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1307 "The numpy array has 3 dimensions: (height, width, color channel).") |
|
4834
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1308 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1309 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1310 else |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1311 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1312 const std::string instanceId = call.GetUriComponent("id", ""); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1313 const bool compress = call.GetBooleanArgument("compress", false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1314 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1315 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1316 uint32_t frame; |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1317 if (!SerializationToolbox::ParseUnsignedInteger32(frame, call.GetUriComponent("frame", "0"))) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1318 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1319 throw OrthancException(ErrorCode_ParameterOutOfRange, "Expected an unsigned integer for the \"frame\" argument"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1320 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1321 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1322 NumpyVisitor visitor(0 /* no depth, 2D frame */, rescale); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1323 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1324 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1325 Semaphore::Locker throttling(throttlingSemaphore_); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1326 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1327 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1328 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1329 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1330 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1331 visitor.Answer(call.GetOutput(), compress); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1332 } |
|
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parents:
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diff
changeset
|
1333 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1334 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1335 |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1336 static void GetNumpyInstance(RestApiGetCall& call) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1337 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1338 if (call.IsDocumentation()) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1339 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1340 DocumentSharedNumpy(call); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1341 call.GetDocumentation() |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1342 .SetTag("Instances") |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1343 .SetSummary("Decode instance for numpy") |
|
4836
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document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1344 .SetDescription("Decode the given DICOM instance, for use with numpy in Python. " |
|
ec1e9571b645
document number of dimensions in numpy arrays
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1345 "The numpy array has 4 dimensions: (frame, height, width, color channel)."); |
|
4834
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1346 } |
|
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parents:
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|
1347 else |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1348 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1349 const std::string instanceId = call.GetUriComponent("id", ""); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1350 const bool compress = call.GetBooleanArgument("compress", false); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1351 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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4831
diff
changeset
|
1352 |
|
bec432ee1094
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diff
changeset
|
1353 { |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1354 Semaphore::Locker throttling(throttlingSemaphore_); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1355 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), instanceId); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1356 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1357 const unsigned int depth = locker.GetDicom().GetFramesCount(); |
|
bec432ee1094
download of numpy arrays from the REST API
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diff
changeset
|
1358 if (depth == 0) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1359 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1360 throw OrthancException(ErrorCode_BadFileFormat, "Empty DICOM instance"); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1361 } |
|
bec432ee1094
download of numpy arrays from the REST API
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4831
diff
changeset
|
1362 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1363 NumpyVisitor visitor(depth, rescale); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1364 |
|
bec432ee1094
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1365 for (unsigned int frame = 0; frame < depth; frame++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1366 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1367 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1368 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1369 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1370 visitor.Answer(call.GetOutput(), compress); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1371 } |
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|
1372 } |
|
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|
1373 } |
|
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diff
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|
1374 |
|
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diff
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|
1375 |
|
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|
1376 static void GetNumpySeries(RestApiGetCall& call) |
|
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1377 { |
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|
1378 if (call.IsDocumentation()) |
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|
1379 { |
|
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|
1380 DocumentSharedNumpy(call); |
|
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1381 call.GetDocumentation() |
|
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|
1382 .SetTag("Series") |
|
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|
1383 .SetSummary("Decode series for numpy") |
|
4836
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1384 .SetDescription("Decode the given DICOM series, for use with numpy in Python. " |
|
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|
1385 "The numpy array has 4 dimensions: (frame, height, width, color channel)."); |
|
4834
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1386 } |
|
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1387 else |
|
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1388 { |
|
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1389 const std::string seriesId = call.GetUriComponent("id", ""); |
|
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diff
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|
1390 const bool compress = call.GetBooleanArgument("compress", false); |
|
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|
1391 const bool rescale = call.GetBooleanArgument("rescale", true); |
|
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|
1392 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1393 Semaphore::Locker throttling(throttlingSemaphore_); |
|
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|
1394 |
|
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|
1395 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
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download of numpy arrays from the REST API
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|
1396 SliceOrdering ordering(index, seriesId); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1397 |
|
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|
1398 unsigned int depth = 0; |
|
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download of numpy arrays from the REST API
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|
1399 for (size_t i = 0; i < ordering.GetInstancesCount(); i++) |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1400 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1401 depth += ordering.GetFramesCount(i); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1402 } |
|
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diff
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|
1403 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1404 ServerContext& context = OrthancRestApi::GetContext(call); |
|
bec432ee1094
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|
1405 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1406 NumpyVisitor visitor(depth, rescale); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1407 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1408 for (size_t i = 0; i < ordering.GetInstancesCount(); i++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1409 { |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1410 const std::string& instanceId = ordering.GetInstanceId(i); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1411 unsigned int framesCount = ordering.GetFramesCount(i); |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1412 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1413 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1414 ServerContext::DicomCacheLocker locker(context, instanceId); |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1415 |
|
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download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1416 for (unsigned int frame = 0; frame < framesCount; frame++) |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1417 { |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1418 visitor.WriteFrame(locker.GetDicom(), frame); |
|
bec432ee1094
download of numpy arrays from the REST API
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parents:
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diff
changeset
|
1419 } |
|
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|
1420 } |
|
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download of numpy arrays from the REST API
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diff
changeset
|
1421 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1422 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1423 visitor.Answer(call.GetOutput(), compress); |
|
bec432ee1094
download of numpy arrays from the REST API
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parents:
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diff
changeset
|
1424 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1425 } |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4831
diff
changeset
|
1426 |
|
bec432ee1094
download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1427 |
| 974 | 1428 static void GetMatlabImage(RestApiGetCall& call) |
|
874
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1429 { |
| 4414 | 1430 if (call.IsDocumentation()) |
| 1431 { | |
| 1432 std::string description; | |
| 1433 | |
| 1434 if (call.HasUriComponent("frame")) | |
| 1435 { | |
| 1436 description = "Decode one frame of interest from the given DICOM instance"; | |
| 1437 call.GetDocumentation() | |
| 1438 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
| 1439 } | |
| 1440 else | |
| 1441 { | |
| 1442 description = "Decode the first frame of the given DICOM instance."; | |
| 1443 } | |
| 1444 | |
| 1445 call.GetDocumentation() | |
| 1446 .SetTag("Instances") | |
| 1447 .SetSummary("Decode frame for Matlab") | |
| 1448 .SetDescription(description + ", and export this frame as a Octave/Matlab matrix to be imported with `eval()`: " | |
| 1449 "https://book.orthanc-server.com/faq/matlab.html") | |
| 1450 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 1451 .AddAnswerType(MimeType_PlainText, "Octave/Matlab matrix"); | |
| 1452 return; | |
| 1453 } | |
| 1454 | |
|
3926
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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3816
diff
changeset
|
1455 Semaphore::Locker locker(throttlingSemaphore_); |
|
2910b0d30fe0
Allow concurrent calls to the custom image decoders provided by the plugins
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diff
changeset
|
1456 |
|
874
87791ebc1f50
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parents:
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diff
changeset
|
1457 ServerContext& context = OrthancRestApi::GetContext(call); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1458 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1459 std::string frameId = call.GetUriComponent("frame", "0"); |
|
87791ebc1f50
download matlab images
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diff
changeset
|
1460 |
|
87791ebc1f50
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1461 unsigned int frame; |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1462 try |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1463 { |
|
87791ebc1f50
download matlab images
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diff
changeset
|
1464 frame = boost::lexical_cast<unsigned int>(frameId); |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1465 } |
|
2836
7133ad478eea
fix Debian warnings
Sebastien Jodogne <s.jodogne@gmail.com>
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2804
diff
changeset
|
1466 catch (boost::bad_lexical_cast&) |
|
874
87791ebc1f50
download matlab images
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diff
changeset
|
1467 { |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1468 return; |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1469 } |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1470 |
|
87791ebc1f50
download matlab images
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parents:
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diff
changeset
|
1471 std::string publicId = call.GetUriComponent("id", ""); |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1472 std::unique_ptr<ImageAccessor> decoded(context.DecodeDicomFrame(publicId, frame)); |
|
874
87791ebc1f50
download matlab images
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diff
changeset
|
1473 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1474 if (decoded.get() == NULL) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1475 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1476 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1477 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1478 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1479 else |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1480 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1481 std::string result; |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1482 decoded->ToMatlabString(result); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3926
diff
changeset
|
1483 call.GetOutput().AnswerBuffer(result, MimeType_PlainText); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1484 } |
|
874
87791ebc1f50
download matlab images
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diff
changeset
|
1485 } |
|
87791ebc1f50
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diff
changeset
|
1486 |
|
87791ebc1f50
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diff
changeset
|
1487 |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
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2382
diff
changeset
|
1488 template <bool GzipCompression> |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1489 static void GetRawFrame(RestApiGetCall& call) |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1490 { |
| 4408 | 1491 if (call.IsDocumentation()) |
| 1492 { | |
| 1493 call.GetDocumentation() | |
| 1494 .SetTag("Instances") | |
| 1495 .SetSummary("Access raw frame" + std::string(GzipCompression ? " (compressed)" : "")) | |
| 1496 .SetDescription("Access the raw content of one individual frame of the DICOM instance of interest, " | |
| 1497 "bypassing image decoding. This is notably useful to access the source files " | |
| 1498 "in compressed transfer syntaxes." + | |
| 1499 std::string(GzipCompression ? " The image is compressed using gzip" : "")) | |
|
4424
83371ccdfe80
openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
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4422
diff
changeset
|
1500 .SetUriArgument("id", "Orthanc identifier of the instance of interest") |
| 4408 | 1501 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
| 1502 | |
| 1503 if (GzipCompression) | |
| 1504 { | |
| 1505 call.GetDocumentation().AddAnswerType(MimeType_Gzip, "The raw frame, compressed using gzip"); | |
| 1506 } | |
| 1507 else | |
| 1508 { | |
| 1509 call.GetDocumentation().AddAnswerType(MimeType_Binary, "The raw frame"); | |
| 1510 } | |
| 1511 return; | |
| 1512 } | |
| 1513 | |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1514 std::string frameId = call.GetUriComponent("frame", "0"); |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1515 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1906
diff
changeset
|
1516 unsigned int frame; |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1517 try |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1518 { |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
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1906
diff
changeset
|
1519 frame = boost::lexical_cast<unsigned int>(frameId); |
|
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1520 } |
|
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|
1521 catch (boost::bad_lexical_cast&) |
|
1924
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1522 { |
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1523 return; |
|
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1524 } |
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1525 |
|
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1526 std::string publicId = call.GetUriComponent("id", ""); |
|
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1527 std::string raw; |
|
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1528 MimeType mime; |
|
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1529 |
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1530 { |
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1531 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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1532 locker.GetDicom().GetRawFrame(raw, mime, frame); |
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1533 } |
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1534 |
|
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1535 if (GzipCompression) |
|
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1536 { |
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1537 GzipCompressor gzip; |
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1538 std::string compressed; |
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1539 gzip.Compress(compressed, raw.empty() ? NULL : raw.c_str(), raw.size()); |
|
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1540 call.GetOutput().AnswerBuffer(compressed, MimeType_Gzip); |
|
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1541 } |
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1542 else |
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1543 { |
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1544 call.GetOutput().AnswerBuffer(raw, mime); |
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1545 } |
|
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1546 } |
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1547 |
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1548 |
| 974 | 1549 static void GetResourceStatistics(RestApiGetCall& call) |
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1550 { |
| 4418 | 1551 if (call.IsDocumentation()) |
| 1552 { | |
| 1553 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1554 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1555 call.GetDocumentation() | |
| 1556 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1557 .SetSummary("Get " + r + " statistics") | |
| 1558 .SetDescription("Get statistics about the given " + r) | |
| 1559 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1560 .SetAnswerField("DiskSize", RestApiCallDocumentation::Type_String, | |
| 1561 "Size of the " + r + " on the disk in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1562 .SetAnswerField("DiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1563 "Size of the " + r + " on the disk, expressed in megabytes (MB)") | |
| 1564 .SetAnswerField("UncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1565 "Size of the " + r + " after decompression in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1566 .SetAnswerField("UncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1567 "Size of the " + r + " after decompression, expressed in megabytes (MB). " | |
| 1568 "This is different from `DiskSizeMB` iff `StorageCompression` is `true`.") | |
| 1569 .SetAnswerField("DicomDiskSize", RestApiCallDocumentation::Type_String, | |
| 1570 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1571 .SetAnswerField("DicomDiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1572 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1573 .SetAnswerField("DicomUncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1574 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1575 .SetAnswerField("DicomUncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1576 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1577 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/statistics", true); | |
| 1578 | |
| 1579 switch (t) | |
| 1580 { | |
| 1581 // Do NOT add "break" below this point! | |
| 1582 case ResourceType_Patient: | |
| 1583 call.GetDocumentation().SetAnswerField("CountStudies", RestApiCallDocumentation::Type_Number, | |
| 1584 "Number of child studies within this " + r); | |
| 1585 | |
| 1586 case ResourceType_Study: | |
| 1587 call.GetDocumentation().SetAnswerField("CountSeries", RestApiCallDocumentation::Type_Number, | |
| 1588 "Number of child series within this " + r); | |
| 1589 | |
| 1590 case ResourceType_Series: | |
| 1591 call.GetDocumentation().SetAnswerField("CountInstances", RestApiCallDocumentation::Type_Number, | |
| 1592 "Number of child instances within this " + r); | |
| 1593 | |
| 1594 case ResourceType_Instance: | |
| 1595 default: | |
| 1596 break; | |
| 1597 } | |
| 1598 | |
| 1599 return; | |
| 1600 } | |
| 1601 | |
|
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1602 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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1603 |
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1604 std::string publicId = call.GetUriComponent("id", ""); |
|
3174
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1605 |
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1606 ResourceType type; |
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1607 uint64_t diskSize, uncompressedSize, dicomDiskSize, dicomUncompressedSize; |
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1608 unsigned int countStudies, countSeries, countInstances; |
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1609 OrthancRestApi::GetIndex(call).GetResourceStatistics( |
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1610 type, diskSize, uncompressedSize, countStudies, countSeries, |
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1611 countInstances, dicomDiskSize, dicomUncompressedSize, publicId); |
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1612 |
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1613 Json::Value result = Json::objectValue; |
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1614 result["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1615 result["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
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1616 result["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1617 result["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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1618 |
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1619 result["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1620 result["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1621 result["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1622 result["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1623 |
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1624 switch (type) |
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1625 { |
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1626 // Do NOT add "break" below this point! |
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1627 case ResourceType_Patient: |
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1628 result["CountStudies"] = countStudies; |
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1629 |
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1630 case ResourceType_Study: |
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1631 result["CountSeries"] = countSeries; |
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1632 |
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1633 case ResourceType_Series: |
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1634 result["CountInstances"] = countInstances; |
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1635 |
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1636 case ResourceType_Instance: |
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1637 default: |
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1638 break; |
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1639 } |
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1640 |
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1641 call.GetOutput().AnswerJson(result); |
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1642 } |
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1643 |
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1644 |
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1645 |
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1646 // Handling of metadata ----------------------------------------------------- |
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1647 |
| 4205 | 1648 static void CheckValidResourceType(const RestApiCall& call) |
|
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1649 { |
|
4460
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|
1650 assert(!call.GetFullUri().empty()); |
| 4409 | 1651 const std::string resourceType = call.GetFullUri() [0]; |
|
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1652 StringToResourceType(resourceType.c_str()); |
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1653 } |
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1654 |
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1655 |
| 974 | 1656 static void ListMetadata(RestApiGetCall& call) |
|
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1657 { |
| 4414 | 1658 if (call.IsDocumentation()) |
| 1659 { | |
| 1660 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1661 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1662 call.GetDocumentation() | |
| 1663 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1664 .SetSummary("List metadata") | |
| 1665 .SetDescription("Get the list of metadata that are associated with the given " + r) | |
| 1666 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1667 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, | |
| 1668 "If present, also retrieve the value of the individual metadata", false) | |
| 1669 .AddAnswerType(MimeType_Json, "JSON array containing the names of the available metadata, " | |
| 1670 "or JSON associative array mapping metadata to their values (if `expand` argument is provided)") | |
| 1671 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/metadata", true); | |
| 1672 return; | |
| 1673 } | |
| 1674 | |
|
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
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4437
diff
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|
1675 assert(!call.GetFullUri().empty()); |
| 4554 | 1676 const std::string publicId = call.GetUriComponent("id", ""); |
| 1677 ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); | |
|
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testing replay of transactions
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|
1678 |
|
350a22c094f2
testing replay of transactions
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|
1679 typedef std::map<MetadataType, std::string> Metadata; |
|
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testing replay of transactions
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1680 |
|
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|
1681 Metadata metadata; |
| 4554 | 1682 OrthancRestApi::GetIndex(call).GetAllMetadata(metadata, publicId, level); |
|
2726
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
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|
1683 |
|
46061a91c88a
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diff
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|
1684 Json::Value result; |
|
751
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refactoring of OrthancRestApi
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|
1685 |
|
2726
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diff
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|
1686 if (call.HasArgument("expand")) |
|
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refactoring of OrthancRestApi
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diff
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|
1687 { |
|
2726
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|
1688 result = Json::objectValue; |
|
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1689 |
|
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|
1690 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
|
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|
1691 { |
|
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|
1692 std::string key = EnumerationToString(it->first); |
|
4bbadcd03966
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|
1693 result[key] = it->second; |
|
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|
1694 } |
|
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|
1695 } |
|
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|
1696 else |
|
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|
1697 { |
|
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|
1698 result = Json::arrayValue; |
|
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|
1699 |
|
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|
1700 for (Metadata::const_iterator it = metadata.begin(); it != metadata.end(); ++it) |
|
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|
1701 { |
|
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|
1702 result.append(EnumerationToString(it->first)); |
|
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|
1703 } |
|
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1704 } |
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|
1705 |
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|
1706 call.GetOutput().AnswerJson(result); |
|
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1707 } |
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|
1708 |
|
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|
1709 |
| 4657 | 1710 static void SetStringContentETag(const RestApiOutput& output, |
| 1711 int64_t revision, | |
| 1712 const std::string& value) | |
|
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|
1713 { |
|
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|
1714 std::string md5; |
|
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|
1715 Toolbox::ComputeMD5(md5, value); |
|
66109d24d26e
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|
1716 const std::string etag = "\"" + boost::lexical_cast<std::string>(revision) + "-" + md5 + "\""; |
|
66109d24d26e
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|
1717 output.GetLowLevelOutput().AddHeader("ETag", etag); |
|
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1718 } |
|
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1719 |
|
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1720 |
| 4657 | 1721 static void SetBufferContentETag(const RestApiOutput& output, |
|
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|
1722 int64_t revision, |
|
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|
1723 const void* data, |
|
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|
1724 size_t size) |
|
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1725 { |
|
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|
1726 std::string md5; |
|
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|
1727 Toolbox::ComputeMD5(md5, data, size); |
|
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|
1728 const std::string etag = "\"" + boost::lexical_cast<std::string>(revision) + "-" + md5 + "\""; |
|
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|
1729 output.GetLowLevelOutput().AddHeader("ETag", etag); |
|
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1730 } |
|
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1731 |
|
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1732 |
| 4657 | 1733 static void SetAttachmentETag(const RestApiOutput& output, |
|
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|
1734 int64_t revision, |
|
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|
1735 const FileInfo& info) |
|
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|
1736 { |
|
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|
1737 const std::string etag = ("\"" + boost::lexical_cast<std::string>(revision) + "-" + |
|
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|
1738 info.GetUncompressedMD5() + "\""); |
|
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|
1739 output.GetLowLevelOutput().AddHeader("ETag", etag); |
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1740 } |
|
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1741 |
|
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1742 |
|
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|
1743 static std::string GetMD5(const std::string& value) |
|
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1744 { |
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|
1745 std::string md5; |
|
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|
1746 Toolbox::ComputeMD5(md5, value); |
|
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|
1747 return md5; |
|
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1748 } |
|
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1749 |
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1750 |
|
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|
1751 static bool GetRevisionHeader(int64_t& revision /* out */, |
|
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|
1752 std::string& md5 /* out */, |
|
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1753 const RestApiCall& call, |
|
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1754 const std::string& header) |
|
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1755 { |
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|
1756 std::string lower; |
|
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|
1757 Toolbox::ToLowerCase(lower, header); |
|
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1758 |
|
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|
1759 HttpToolbox::Arguments::const_iterator found = call.GetHttpHeaders().find(lower); |
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1760 if (found == call.GetHttpHeaders().end()) |
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1761 { |
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|
1762 return false; |
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1763 } |
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1764 else |
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1765 { |
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|
1766 std::string value = Toolbox::StripSpaces(found->second); |
|
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|
1767 Toolbox::RemoveSurroundingQuotes(value); |
|
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1768 |
|
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1769 try |
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|
1770 { |
|
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|
1771 size_t comma = value.find('-'); |
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|
1772 if (comma != std::string::npos) |
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1773 { |
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|
1774 revision = boost::lexical_cast<int64_t>(value.substr(0, comma)); |
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|
1775 md5 = value.substr(comma + 1); |
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|
1776 return true; |
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1777 } |
|
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1778 } |
|
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|
1779 catch (boost::bad_lexical_cast&) |
|
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|
1780 { |
|
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|
1781 } |
|
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1782 |
|
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1783 throw OrthancException(ErrorCode_ParameterOutOfRange, "The \"" + header + |
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1784 "\" HTTP header should contain the ETag (revision followed by MD5 hash), but found: " + value); |
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1785 } |
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1786 } |
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1787 |
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1788 |
| 974 | 1789 static void GetMetadata(RestApiGetCall& call) |
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1790 { |
| 4414 | 1791 if (call.IsDocumentation()) |
| 1792 { | |
| 1793 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1794 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1795 call.GetDocumentation() | |
| 1796 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1797 .SetSummary("Get metadata") | |
| 1798 .SetDescription("Get the value of a metadata that is associated with the given " + r) | |
| 1799 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1800 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
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1801 .AddAnswerType(MimeType_PlainText, "Value of the metadata") |
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1802 .SetAnswerHeader("ETag", "Revision of the metadata, to be used in further `PUT` or `DELETE` operations") |
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1803 .SetHttpHeader("If-None-Match", "Optional revision of the metadata, to check if its content has changed"); |
| 4414 | 1804 return; |
| 1805 } | |
| 1806 | |
|
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1807 assert(!call.GetFullUri().empty()); |
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1808 const std::string publicId = call.GetUriComponent("id", ""); |
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1809 const ResourceType level = StringToResourceType(call.GetFullUri() [0].c_str()); |
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1810 |
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1811 std::string name = call.GetUriComponent("name", ""); |
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1812 MetadataType metadata = StringToMetadata(name); |
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1813 |
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1814 std::string value; |
|
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1815 int64_t revision; |
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1816 if (OrthancRestApi::GetIndex(call).LookupMetadata(value, revision, publicId, level, metadata)) |
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1817 { |
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1818 SetStringContentETag(call.GetOutput(), revision, value); // New in Orthanc 1.9.2 |
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1819 |
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1820 int64_t userRevision; |
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1821 std::string userMD5; |
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1822 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
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1823 userRevision == revision && |
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1824 userMD5 == GetMD5(value)) |
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1825 { |
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1826 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
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1827 } |
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1828 else |
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1829 { |
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1830 call.GetOutput().AnswerBuffer(value, MimeType_PlainText); |
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1831 } |
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1832 } |
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1833 } |
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1834 |
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1835 |
| 974 | 1836 static void DeleteMetadata(RestApiDeleteCall& call) |
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1837 { |
| 4414 | 1838 if (call.IsDocumentation()) |
| 1839 { | |
| 1840 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1841 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1842 call.GetDocumentation() | |
| 1843 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1844 .SetSummary("Delete metadata") | |
| 1845 .SetDescription("Delete some metadata associated with the given DICOM " + r + | |
| 1846 ". This call will fail if trying to delete a system metadata (i.e. whose index is < 1024).") | |
| 1847 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
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1848 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") |
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1849 .SetHttpHeader("If-Match", "Revision of the metadata, to check if its content has not changed and can " |
|
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1850 "be deleted. This header is mandatory if `CheckRevisions` option is `true`."); |
| 4414 | 1851 return; |
| 1852 } | |
| 1853 | |
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1854 CheckValidResourceType(call); |
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1855 const std::string publicId = call.GetUriComponent("id", ""); |
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1856 |
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1857 std::string name = call.GetUriComponent("name", ""); |
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1858 MetadataType metadata = StringToMetadata(name); |
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1859 |
|
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1860 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
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1861 { |
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1862 bool found; |
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1863 int64_t revision; |
|
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1864 std::string md5; |
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1865 if (GetRevisionHeader(revision, md5, call, "if-match")) |
|
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1866 { |
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1867 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, true, revision, md5); |
|
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1868 } |
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1869 else |
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1870 { |
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1871 OrthancConfiguration::ReaderLock lock; |
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1872 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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1873 { |
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1874 throw OrthancException(ErrorCode_Revision, |
|
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1875 "HTTP header \"If-Match\" is missing, as \"CheckRevisions\" is \"true\""); |
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1876 } |
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1877 else |
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1878 { |
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1879 found = OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata, false, -1 /* dummy value */, ""); |
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1880 } |
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1881 } |
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1882 |
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1883 if (found) |
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1884 { |
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1885 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1886 } |
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1887 else |
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1888 { |
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1889 throw OrthancException(ErrorCode_UnknownResource); |
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1890 } |
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1891 } |
|
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1892 else |
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1893 { |
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1894 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1895 } |
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1896 } |
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1897 |
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1898 |
| 974 | 1899 static void SetMetadata(RestApiPutCall& call) |
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1900 { |
| 4414 | 1901 if (call.IsDocumentation()) |
| 1902 { | |
| 1903 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1904 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1905 call.GetDocumentation() | |
| 1906 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1907 .SetSummary("Set metadata") | |
| 1908 .SetDescription("Set the value of some metadata in the given DICOM " + r + | |
| 1909 ". This call will fail if trying to modify a system metadata (i.e. whose index is < 1024).") | |
| 1910 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1911 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
|
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1912 .AddRequestType(MimeType_PlainText, "String value of the metadata") |
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1913 .SetHttpHeader("If-Match", "Revision of the metadata, if this is not the first time this metadata is set."); |
| 4414 | 1914 return; |
| 1915 } | |
| 1916 | |
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1917 CheckValidResourceType(call); |
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1918 |
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1919 std::string publicId = call.GetUriComponent("id", ""); |
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1920 std::string name = call.GetUriComponent("name", ""); |
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1921 MetadataType metadata = StringToMetadata(name); |
|
1446
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1922 |
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1923 std::string value; |
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1924 call.BodyToString(value); |
|
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1925 |
|
1773
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1926 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
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1927 { |
|
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1928 int64_t oldRevision; |
|
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1929 std::string oldMD5; |
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1930 bool hasOldRevision = GetRevisionHeader(oldRevision, oldMD5, call, "if-match"); |
|
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1931 |
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1932 if (!hasOldRevision) |
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1933 { |
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1934 OrthancConfiguration::ReaderLock lock; |
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1935 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
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1936 { |
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1937 // "StatelessDatabaseOperations::SetMetadata()" will ignore |
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1938 // the actual value of "oldRevision" if the metadata is |
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1939 // inexistent as expected |
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1940 hasOldRevision = true; |
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1941 oldRevision = -1; // dummy value |
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1942 oldMD5.clear(); // dummy value |
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1943 } |
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1944 } |
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1945 |
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1946 int64_t newRevision; |
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1947 OrthancRestApi::GetIndex(call).SetMetadata(newRevision, publicId, metadata, value, |
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1948 hasOldRevision, oldRevision, oldMD5); |
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1949 |
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1950 SetStringContentETag(call.GetOutput(), newRevision, value); // New in Orthanc 1.9.2 |
|
2908
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1951 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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1952 } |
|
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1953 else |
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1954 { |
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1955 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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1956 } |
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1957 } |
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1958 |
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1959 |
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1960 |
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|
1961 |
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|
1962 // Handling of attached files ----------------------------------------------- |
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1963 |
| 974 | 1964 static void ListAttachments(RestApiGetCall& call) |
|
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1965 { |
| 4409 | 1966 if (call.IsDocumentation()) |
| 1967 { | |
| 1968 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1969 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1970 call.GetDocumentation() | |
| 1971 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1972 .SetSummary("List attachments") | |
| 1973 .SetDescription("Get the list of attachments that are associated with the given " + r) | |
| 1974 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
|
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1975 .SetHttpGetArgument("full", RestApiCallDocumentation::Type_String, |
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1976 "If present, retrieve the attachments list and their numerical ids", false) |
| 4409 | 1977 .AddAnswerType(MimeType_Json, "JSON array containing the names of the attachments") |
| 1978 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/attachments", true); | |
| 1979 return; | |
| 1980 } | |
| 1981 | |
| 1982 const std::string resourceType = call.GetFullUri() [0]; | |
| 1983 const std::string publicId = call.GetUriComponent("id", ""); | |
|
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1984 std::set<FileContentType> attachments; |
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1985 OrthancRestApi::GetIndex(call).ListAvailableAttachments(attachments, publicId, StringToResourceType(resourceType.c_str())); |
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1986 |
|
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|
1987 Json::Value result; |
|
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|
1988 |
|
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|
1989 if (call.HasArgument("full")) |
|
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|
1990 { |
|
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1991 result = Json::objectValue; |
|
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|
1992 |
|
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|
1993 for (std::set<FileContentType>::const_iterator |
|
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|
1994 it = attachments.begin(); it != attachments.end(); ++it) |
|
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|
1995 { |
|
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|
1996 std::string key = EnumerationToString(*it); |
|
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|
1997 result[key] = static_cast<uint16_t>(*it); |
|
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|
1998 } |
|
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|
1999 } |
|
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|
2000 else |
|
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|
2001 { |
|
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|
2002 result = Json::arrayValue; |
|
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|
2003 |
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|
2004 for (std::set<FileContentType>::const_iterator |
|
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|
2005 it = attachments.begin(); it != attachments.end(); ++it) |
|
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|
2006 { |
|
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|
2007 result.append(EnumerationToString(*it)); |
|
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|
2008 } |
|
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|
2009 } |
|
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|
2010 |
|
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|
2011 call.GetOutput().AnswerJson(result); |
|
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|
2012 } |
|
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|
2013 |
|
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|
2014 |
|
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|
2015 static void AddAttachmentDocumentation(RestApiGetCall& call, |
|
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|
2016 const std::string& resourceType) |
|
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|
2017 { |
|
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|
2018 call.GetDocumentation() |
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|
2019 .SetUriArgument("id", "Orthanc identifier of the " + resourceType + " of interest") |
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|
2020 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
|
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|
2021 .SetAnswerHeader("ETag", "Revision of the attachment, to be used in further `PUT` or `DELETE` operations") |
|
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|
2022 .SetHttpHeader("If-None-Match", "Optional revision of the attachment, to check if its content has changed"); |
|
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|
2023 } |
|
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|
2024 |
|
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|
2025 |
|
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|
2026 static bool GetAttachmentInfo(FileInfo& info, |
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|
2027 RestApiGetCall& call) |
|
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|
2028 { |
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|
2029 CheckValidResourceType(call); |
|
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|
2030 |
|
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|
2031 const std::string publicId = call.GetUriComponent("id", ""); |
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|
2032 const std::string name = call.GetUriComponent("name", ""); |
|
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|
2033 FileContentType contentType = StringToContentType(name); |
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|
2034 |
|
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|
2035 int64_t revision; |
|
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|
2036 if (OrthancRestApi::GetIndex(call).LookupAttachment(info, revision, publicId, contentType)) |
|
f7d5372b59b3
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|
2037 { |
|
4640
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changeset
|
2038 SetAttachmentETag(call.GetOutput(), revision, info); // New in Orthanc 1.9.2 |
|
4627
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|
2039 |
|
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|
2040 int64_t userRevision; |
|
4640
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|
2041 std::string userMD5; |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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4627
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|
2042 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
|
66109d24d26e
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changeset
|
2043 revision == userRevision && |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2044 info.GetUncompressedMD5() == userMD5) |
|
4627
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handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2045 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2046 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2047 return false; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2048 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2049 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2050 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2051 return true; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2052 } |
|
f7d5372b59b3
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2053 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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4623
diff
changeset
|
2054 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2055 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2056 throw OrthancException(ErrorCode_UnknownResource); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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4623
diff
changeset
|
2057 } |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2058 } |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2059 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2060 |
| 974 | 2061 static void GetAttachmentOperations(RestApiGetCall& call) |
|
751
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diff
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|
2062 { |
| 4409 | 2063 if (call.IsDocumentation()) |
| 2064 { | |
| 2065 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2066 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
4627
f7d5372b59b3
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Sebastien Jodogne <s.jodogne@gmail.com>
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4623
diff
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|
2067 AddAttachmentDocumentation(call, r); |
| 4409 | 2068 call.GetDocumentation() |
| 2069 .SetTag("Other") | |
| 4414 | 2070 .SetSummary("List operations on attachments") |
| 2071 .SetDescription("Get the list of the operations that are available for attachments associated with the given " + r) | |
| 4409 | 2072 .AddAnswerType(MimeType_Json, "List of the available operations") |
| 2073 .SetHttpGetSample("https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2/attachments/dicom", true); | |
| 2074 return; | |
| 2075 } | |
| 2076 | |
|
751
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2077 FileInfo info; |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2078 if (GetAttachmentInfo(info, call)) |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2079 { |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2080 Json::Value operations = Json::arrayValue; |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2081 |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2082 operations.append("compress"); |
|
751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2083 operations.append("compressed-data"); |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2084 |
|
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2085 if (info.GetCompressedMD5() != "") |
|
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2086 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2087 operations.append("compressed-md5"); |
|
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parents:
diff
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|
2088 } |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2089 |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2090 operations.append("compressed-size"); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2091 operations.append("data"); |
|
4883
504624b0a062
Added "/patients|studies|series|instances/{...}/attachments/{...}/info" route to retrieve the full information about an attachment (size, type, MD5 and UUID)
Alain Mazy <am@osimis.io>
parents:
4880
diff
changeset
|
2092 operations.append("info"); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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1556
diff
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|
2093 operations.append("is-compressed"); |
|
751
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2094 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2095 if (info.GetUncompressedMD5() != "") |
|
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2096 { |
|
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diff
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|
2097 operations.append("md5"); |
|
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diff
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|
2098 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2099 |
|
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diff
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|
2100 operations.append("size"); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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1556
diff
changeset
|
2101 operations.append("uncompress"); |
|
751
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2102 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2103 if (info.GetCompressedMD5() != "" && |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2104 info.GetUncompressedMD5() != "") |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2105 { |
|
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parents:
diff
changeset
|
2106 operations.append("verify-md5"); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2107 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2108 |
|
4883
504624b0a062
Added "/patients|studies|series|instances/{...}/attachments/{...}/info" route to retrieve the full information about an attachment (size, type, MD5 and UUID)
Alain Mazy <am@osimis.io>
parents:
4880
diff
changeset
|
2109 operations.append("uuid"); |
|
504624b0a062
Added "/patients|studies|series|instances/{...}/attachments/{...}/info" route to retrieve the full information about an attachment (size, type, MD5 and UUID)
Alain Mazy <am@osimis.io>
parents:
4880
diff
changeset
|
2110 |
|
751
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diff
changeset
|
2111 call.GetOutput().AnswerJson(operations); |
|
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diff
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|
2112 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2113 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2114 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2115 |
|
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diff
changeset
|
2116 template <int uncompress> |
| 974 | 2117 static void GetAttachmentData(RestApiGetCall& call) |
|
751
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2118 { |
| 4409 | 2119 if (call.IsDocumentation()) |
| 2120 { | |
| 2121 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2122 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2123 call.GetDocumentation() | |
| 2124 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2125 .SetSummary("Get attachment" + std::string(uncompress ? "" : " (no decompression)")) | |
| 2126 .SetDescription("Get the (binary) content of one attachment associated with the given " + r + | |
| 4418 | 2127 std::string(uncompress ? "" : ". The attachment will not be decompressed if `StorageCompression` is `true`.")) |
| 4409 | 2128 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 2129 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
|
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|
2130 .AddAnswerType(MimeType_Binary, "The attachment") |
|
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|
2131 .SetAnswerHeader("ETag", "Revision of the attachment, to be used in further `PUT` or `DELETE` operations") |
|
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diff
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|
2132 .SetHttpHeader("If-None-Match", "Optional revision of the metadata, to check if its content has changed"); |
| 4409 | 2133 return; |
| 2134 } | |
| 2135 | |
|
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|
2136 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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|
2137 |
|
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diff
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|
2138 CheckValidResourceType(call); |
|
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|
2139 |
|
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diff
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|
2140 std::string publicId = call.GetUriComponent("id", ""); |
|
1146
200fcac0deb4
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Sebastien Jodogne <s.jodogne@gmail.com>
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1145
diff
changeset
|
2141 FileContentType type = StringToContentType(call.GetUriComponent("name", "")); |
|
751
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diff
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|
2142 |
|
4640
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changeset
|
2143 FileInfo info; |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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diff
changeset
|
2144 if (GetAttachmentInfo(info, call)) |
|
1146
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1145
diff
changeset
|
2145 { |
|
4640
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"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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diff
changeset
|
2146 // NB: "SetAttachmentETag()" is already invoked by "GetAttachmentInfo()" |
|
66109d24d26e
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|
2147 |
|
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changeset
|
2148 if (uncompress) |
|
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|
2149 { |
|
f7d5372b59b3
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changeset
|
2150 context.AnswerAttachment(call.GetOutput(), publicId, type); |
|
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|
2151 } |
|
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|
2152 else |
|
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changeset
|
2153 { |
|
4640
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changeset
|
2154 // Return the raw data (possibly compressed), as stored on the filesystem |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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|
2155 std::string content; |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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4627
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changeset
|
2156 int64_t revision; |
|
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
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parents:
5003
diff
changeset
|
2157 context.ReadAttachment(content, revision, publicId, type, false, true /* skipCache when you absolutely need the compressed data */); |
|
4640
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|
2158 |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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diff
changeset
|
2159 int64_t userRevision; |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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changeset
|
2160 std::string userMD5; |
|
66109d24d26e
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4627
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changeset
|
2161 if (GetRevisionHeader(userRevision, userMD5, call, "If-None-Match") && |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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changeset
|
2162 revision == userRevision && |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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changeset
|
2163 info.GetUncompressedMD5() == userMD5) |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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changeset
|
2164 { |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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diff
changeset
|
2165 call.GetOutput().GetLowLevelOutput().SendStatus(HttpStatus_304_NotModified); |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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|
2166 } |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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|
2167 else |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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|
2168 { |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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changeset
|
2169 call.GetOutput().AnswerBuffer(content, MimeType_Binary); |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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changeset
|
2170 } |
|
4627
f7d5372b59b3
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|
2171 } |
|
1146
200fcac0deb4
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1145
diff
changeset
|
2172 } |
|
751
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|
2173 } |
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2174 |
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2175 |
| 974 | 2176 static void GetAttachmentSize(RestApiGetCall& call) |
|
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2177 { |
| 4409 | 2178 if (call.IsDocumentation()) |
| 2179 { | |
| 2180 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2181 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
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2182 AddAttachmentDocumentation(call, r); |
| 4409 | 2183 call.GetDocumentation() |
| 2184 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2185 .SetSummary("Get size of attachment") | |
| 2186 .SetDescription("Get the size of one attachment associated with the given " + r) | |
| 2187 .AddAnswerType(MimeType_PlainText, "The size of the attachment"); | |
| 2188 return; | |
| 2189 } | |
| 2190 | |
|
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2191 FileInfo info; |
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|
2192 if (GetAttachmentInfo(info, call)) |
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2193 { |
|
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2194 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedSize()), MimeType_PlainText); |
|
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2195 } |
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2196 } |
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2197 |
|
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2198 static void GetAttachmentInfo(RestApiGetCall& call) |
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2199 { |
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2200 if (call.IsDocumentation()) |
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2201 { |
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2202 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
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2203 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
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2204 AddAttachmentDocumentation(call, r); |
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2205 call.GetDocumentation() |
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2206 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
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2207 .SetSummary("Get info about the attachment") |
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2208 .SetDescription("Get all the information about the attachment associated with the given " + r) |
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2209 .AddAnswerType(MimeType_Json, "JSON object containing the information about the attachment") |
| 5003 | 2210 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/attachments/dicom/info", true); |
|
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2211 return; |
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2212 } |
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2213 |
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2214 FileInfo info; |
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2215 if (GetAttachmentInfo(info, call)) |
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2216 { |
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2217 Json::Value result = Json::objectValue; |
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2218 result["Uuid"] = info.GetUuid(); |
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2219 result["ContentType"] = info.GetContentType(); |
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2220 result["UncompressedSize"] = Json::Value::UInt64(info.GetUncompressedSize()); |
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2221 result["CompressedSize"] = Json::Value::UInt64(info.GetCompressedSize()); |
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2222 result["UncompressedMD5"] = info.GetUncompressedMD5(); |
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2223 result["CompressedMD5"] = info.GetCompressedMD5(); |
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2224 |
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2225 call.GetOutput().AnswerJson(result); |
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2226 } |
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2227 } |
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2228 |
| 974 | 2229 static void GetAttachmentCompressedSize(RestApiGetCall& call) |
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2230 { |
| 4409 | 2231 if (call.IsDocumentation()) |
| 2232 { | |
| 2233 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2234 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2235 AddAttachmentDocumentation(call, r); |
| 4409 | 2236 call.GetDocumentation() |
| 2237 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 4410 | 2238 .SetSummary("Get size of attachment on disk") |
| 4409 | 2239 .SetDescription("Get the size of one attachment associated with the given " + r + ", as stored on the disk. " |
| 4413 | 2240 "This is different from `.../size` iff `EnableStorage` is `true`.") |
| 4410 | 2241 .AddAnswerType(MimeType_PlainText, "The size of the attachment, as stored on the disk"); |
| 4409 | 2242 return; |
| 2243 } | |
| 2244 | |
|
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2245 FileInfo info; |
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2246 if (GetAttachmentInfo(info, call)) |
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2247 { |
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2248 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedSize()), MimeType_PlainText); |
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2249 } |
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2250 } |
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2251 |
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2252 |
| 974 | 2253 static void GetAttachmentMD5(RestApiGetCall& call) |
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2254 { |
| 4410 | 2255 if (call.IsDocumentation()) |
| 2256 { | |
| 2257 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2258 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2259 AddAttachmentDocumentation(call, r); |
| 4410 | 2260 call.GetDocumentation() |
| 2261 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2262 .SetSummary("Get MD5 of attachment") | |
| 2263 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r) | |
| 2264 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment"); | |
| 2265 return; | |
| 2266 } | |
| 2267 | |
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2268 FileInfo info; |
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2269 if (GetAttachmentInfo(info, call) && |
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2270 info.GetUncompressedMD5() != "") |
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2271 { |
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2272 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedMD5()), MimeType_PlainText); |
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2273 } |
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2274 } |
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2275 |
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2276 |
| 974 | 2277 static void GetAttachmentCompressedMD5(RestApiGetCall& call) |
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2278 { |
| 4410 | 2279 if (call.IsDocumentation()) |
| 2280 { | |
| 2281 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2282 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
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2283 AddAttachmentDocumentation(call, r); |
| 4410 | 2284 call.GetDocumentation() |
| 2285 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2286 .SetSummary("Get MD5 of attachment on disk") | |
| 2287 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r + ", as stored on the disk. " | |
| 4413 | 2288 "This is different from `.../md5` iff `EnableStorage` is `true`.") |
| 4410 | 2289 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment, as stored on the disk"); |
| 2290 return; | |
| 2291 } | |
| 2292 | |
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2293 FileInfo info; |
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2294 if (GetAttachmentInfo(info, call) && |
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2295 info.GetCompressedMD5() != "") |
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2296 { |
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2297 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedMD5()), MimeType_PlainText); |
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2298 } |
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2299 } |
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2300 |
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2301 |
| 974 | 2302 static void VerifyAttachment(RestApiPostCall& call) |
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2303 { |
| 4410 | 2304 if (call.IsDocumentation()) |
| 2305 { | |
| 2306 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2307 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2308 call.GetDocumentation() | |
| 2309 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2310 .SetSummary("Verify attachment") | |
| 2311 .SetDescription("Verify that the attachment is not corrupted, by validating its MD5 hash") | |
| 2312 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 2313 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 2314 .AddAnswerType(MimeType_Json, "On success, a valid JSON object is returned"); |
| 2315 return; | |
| 2316 } | |
| 2317 | |
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2318 ServerContext& context = OrthancRestApi::GetContext(call); |
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2319 CheckValidResourceType(call); |
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2320 |
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2321 std::string publicId = call.GetUriComponent("id", ""); |
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|
2322 std::string name = call.GetUriComponent("name", ""); |
|
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2323 FileContentType contentType = StringToContentType(name); |
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2324 |
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|
2325 FileInfo info; |
|
4627
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|
2326 int64_t revision; // Ignored |
|
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|
2327 if (!OrthancRestApi::GetIndex(call).LookupAttachment(info, revision, publicId, contentType) || |
|
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2328 info.GetCompressedMD5() == "" || |
|
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|
2329 info.GetUncompressedMD5() == "") |
|
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2330 { |
|
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|
2331 // Inexistent resource, or no MD5 available |
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|
2332 return; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2333 } |
|
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|
2334 |
|
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|
2335 bool ok = false; |
|
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2336 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2337 // First check whether the compressed data is correctly stored in the disk |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2338 std::string data; |
|
5048
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Alain Mazy <am@osimis.io>
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2339 context.ReadAttachment(data, revision, publicId, StringToContentType(name), false, true /* skipCache when you absolutely need the compressed data */); |
|
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2340 |
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2341 std::string actualMD5; |
|
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diff
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|
2342 Toolbox::ComputeMD5(actualMD5, data); |
|
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|
2343 |
|
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|
2344 if (actualMD5 == info.GetCompressedMD5()) |
|
5197fd35333c
refactoring of OrthancRestApi
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|
2345 { |
|
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|
2346 // The compressed data is OK. If a compression algorithm was |
|
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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2347 // applied to it, now check the MD5 of the uncompressed data. |
|
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refactoring of OrthancRestApi
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parents:
diff
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|
2348 if (info.GetCompressionType() == CompressionType_None) |
|
5197fd35333c
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2349 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2350 ok = true; |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2351 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2352 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
2353 { |
|
5048
22966345eaba
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Alain Mazy <am@osimis.io>
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2354 context.ReadAttachment(data, revision, publicId, StringToContentType(name), true, true /* skipCache when you absolutely need the compressed data */); |
|
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2355 Toolbox::ComputeMD5(actualMD5, data); |
|
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parents:
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2356 ok = (actualMD5 == info.GetUncompressedMD5()); |
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2357 } |
|
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2358 } |
|
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|
2359 |
|
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|
2360 if (ok) |
|
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|
2361 { |
|
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4272
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|
2362 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has the right MD5"; |
|
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2363 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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2364 } |
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2365 else |
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2366 { |
|
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Alain Mazy <alain@mazy.be>
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|
2367 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has bad MD5!"; |
|
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2368 } |
|
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|
2369 } |
|
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|
2370 |
|
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2371 |
| 974 | 2372 static void UploadAttachment(RestApiPutCall& call) |
|
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2373 { |
| 4414 | 2374 if (call.IsDocumentation()) |
| 2375 { | |
| 2376 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2377 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2378 call.GetDocumentation() | |
| 2379 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2380 .SetSummary("Set attachment") | |
| 2381 .SetDescription("Attach a file to the given DICOM " + r + | |
| 2382 ". This call will fail if trying to modify a system attachment (i.e. whose index is < 1024).") | |
| 2383 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 2384 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") | |
| 2385 .AddRequestType(MimeType_Binary, "Binary data containing the attachment") | |
|
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2386 .AddAnswerType(MimeType_Json, "Empty JSON object in the case of a success") |
|
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|
2387 .SetHttpHeader("If-Match", "Revision of the attachment, if this is not the first time this attachment is set."); |
| 4414 | 2388 return; |
| 2389 } | |
| 2390 | |
|
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2391 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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|
2392 CheckValidResourceType(call); |
|
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|
2393 |
|
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|
2394 std::string publicId = call.GetUriComponent("id", ""); |
|
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refactoring of OrthancRestApi
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|
2395 std::string name = call.GetUriComponent("name", ""); |
|
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2396 |
|
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2397 FileContentType contentType = StringToContentType(name); |
|
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2398 if (IsUserContentType(contentType)) // It is forbidden to modify internal attachments |
|
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2399 { |
|
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diff
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|
2400 int64_t oldRevision; |
|
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|
2401 std::string oldMD5; |
|
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2402 bool hasOldRevision = GetRevisionHeader(oldRevision, oldMD5, call, "if-match"); |
|
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2403 |
|
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2404 if (!hasOldRevision) |
|
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|
2405 { |
|
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|
2406 OrthancConfiguration::ReaderLock lock; |
|
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|
2407 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
|
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2408 { |
|
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|
2409 // "StatelessDatabaseOperations::AddAttachment()" will ignore |
|
f7d5372b59b3
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|
2410 // the actual value of "oldRevision" if the metadata is |
|
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2411 // inexistent as expected |
|
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2412 hasOldRevision = true; |
|
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|
2413 oldRevision = -1; // dummy value |
|
4640
66109d24d26e
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4627
diff
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|
2414 oldMD5.clear(); // dummy value |
|
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|
2415 } |
|
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2416 } |
|
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|
2417 |
|
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|
2418 int64_t newRevision; |
|
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|
2419 context.AddAttachment(newRevision, publicId, StringToContentType(name), call.GetBodyData(), |
|
4640
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|
2420 call.GetBodySize(), hasOldRevision, oldRevision, oldMD5); |
|
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2421 |
|
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|
2422 SetBufferContentETag(call.GetOutput(), newRevision, call.GetBodyData(), call.GetBodySize()); // New in Orthanc 1.9.2 |
|
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2423 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
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2424 } |
|
2128
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|
2425 else |
|
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|
2426 { |
|
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2427 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
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|
2428 } |
|
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2429 } |
|
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2430 |
|
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2431 |
| 974 | 2432 static void DeleteAttachment(RestApiDeleteCall& call) |
|
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2433 { |
| 4413 | 2434 if (call.IsDocumentation()) |
| 2435 { | |
| 2436 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2437 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2438 call.GetDocumentation() | |
| 2439 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2440 .SetSummary("Delete attachment") | |
| 4414 | 2441 .SetDescription("Delete an attachment associated with the given DICOM " + r + |
| 2442 ". This call will fail if trying to delete a system attachment (i.e. whose index is < 1024).") | |
| 4413 | 2443 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
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|
2444 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
|
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|
2445 .SetHttpHeader("If-Match", "Revision of the attachment, to check if its content has not changed and can " |
|
4661
b1d87d41874e
typo: replaced "CheckRevision" by "CheckRevisions"
Sebastien Jodogne <s.jodogne@gmail.com>
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4657
diff
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|
2446 "be deleted. This header is mandatory if `CheckRevisions` option is `true`."); |
| 4413 | 2447 return; |
| 2448 } | |
| 2449 | |
|
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|
2450 CheckValidResourceType(call); |
|
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|
2451 |
|
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|
2452 std::string publicId = call.GetUriComponent("id", ""); |
|
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|
2453 std::string name = call.GetUriComponent("name", ""); |
|
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diff
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|
2454 FileContentType contentType = StringToContentType(name); |
|
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2455 |
|
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changeset
|
2456 bool allowed; |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2457 if (IsUserContentType(contentType)) |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2458 { |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2459 allowed = true; |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2460 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2461 else |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2462 { |
|
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2463 OrthancConfiguration::ReaderLock lock; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2464 |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2465 if (lock.GetConfiguration().GetBooleanParameter("StoreDicom", true) && |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2466 contentType == FileContentType_DicomAsJson) |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2467 { |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2468 allowed = true; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2469 } |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2470 else |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2471 { |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2472 // It is forbidden to delete internal attachments, except for |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2473 // the "DICOM as JSON" summary as of Orthanc 1.2.0 (this summary |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2474 // would be automatically reconstructed on the next GET call) |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2475 allowed = false; |
|
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2935
diff
changeset
|
2476 } |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2477 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2478 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2479 if (allowed) |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2480 { |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2481 bool found; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2482 int64_t revision; |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2483 std::string md5; |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2484 if (GetRevisionHeader(revision, md5, call, "if-match")) |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2485 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2486 found = OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType, true, revision, md5); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2487 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2488 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2489 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2490 OrthancConfiguration::ReaderLock lock; |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2491 if (lock.GetConfiguration().GetBooleanParameter(CHECK_REVISIONS, false)) |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2492 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2493 throw OrthancException(ErrorCode_Revision, |
|
4661
b1d87d41874e
typo: replaced "CheckRevision" by "CheckRevisions"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4657
diff
changeset
|
2494 "HTTP header \"If-Match\" is missing, as \"CheckRevisions\" is \"true\""); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2495 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2496 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2497 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2498 found = OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType, |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
2499 false, -1 /* dummy value */, "" /* dummy value */); |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2500 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2501 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2502 |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2503 if (found) |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2504 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2505 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2506 } |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2507 else |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2508 { |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2509 throw OrthancException(ErrorCode_UnknownResource); |
|
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2510 } |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2511 } |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2512 else |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2513 { |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2514 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2127
diff
changeset
|
2515 } |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2516 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2517 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2518 |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2519 template <enum CompressionType compression> |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2520 static void ChangeAttachmentCompression(RestApiPostCall& call) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2521 { |
| 4413 | 2522 if (call.IsDocumentation()) |
| 2523 { | |
| 2524 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2525 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2526 call.GetDocumentation() | |
| 2527 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2528 .SetSummary(compression == CompressionType_None ? "Uncompress attachment" : "Compress attachment") | |
| 2529 .SetDescription("Change the compression scheme that is used to store an attachment.") | |
| 2530 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 2531 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
| 4413 | 2532 return; |
| 2533 } | |
| 2534 | |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2535 CheckValidResourceType(call); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2536 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2537 std::string publicId = call.GetUriComponent("id", ""); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2538 std::string name = call.GetUriComponent("name", ""); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2539 FileContentType contentType = StringToContentType(name); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2540 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2541 OrthancRestApi::GetContext(call).ChangeAttachmentCompression(publicId, contentType, compression); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2542 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2543 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2544 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2545 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2546 static void IsAttachmentCompressed(RestApiGetCall& call) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2547 { |
| 4413 | 2548 if (call.IsDocumentation()) |
| 2549 { | |
| 2550 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2551 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
|
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
2552 AddAttachmentDocumentation(call, r); |
| 4413 | 2553 call.GetDocumentation() |
| 2554 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2555 .SetSummary("Is attachment compressed?") | |
| 2556 .SetDescription("Test whether the attachment has been stored as a compressed file on the disk.") | |
| 2557 .AddAnswerType(MimeType_PlainText, "`0` if the attachment was stored uncompressed, `1` if it was compressed"); | |
| 2558 return; | |
| 2559 } | |
| 2560 | |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2561 FileInfo info; |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2562 if (GetAttachmentInfo(info, call)) |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2563 { |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2564 std::string answer = (info.GetCompressionType() == CompressionType_None) ? "0" : "1"; |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2565 call.GetOutput().AnswerBuffer(answer, MimeType_PlainText); |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2566 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2567 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2568 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
2569 |
| 782 | 2570 // Raw access to the DICOM tags of an instance ------------------------------ |
| 2571 | |
| 974 | 2572 static void GetRawContent(RestApiGetCall& call) |
| 782 | 2573 { |
|
4405
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2574 if (call.IsDocumentation()) |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2575 { |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2576 call.GetDocumentation() |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2577 .SetTag("Instances") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2578 .SetSummary("Get raw tag") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2579 .SetDescription("Get the raw content of one DICOM tag in the hierarchy of DICOM dataset") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2580 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2581 .SetUriArgument("...", "Path to the DICOM tag. This is the interleaving of one DICOM tag, possibly followed " |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2582 "by an index for sequences. Sequences are accessible as, for instance, `/0008-1140/1/0008-1150`") |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2583 .AddAnswerType(MimeType_Binary, "The raw value of the tag of intereset " |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2584 "(binary data, whose memory layout depends on the underlying transfer syntax), " |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2585 "or JSON array containing the list of available tags if accessing a dataset"); |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2586 return; |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2587 } |
|
5466f336b09f
gathering statistics about progress of api documentation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4404
diff
changeset
|
2588 |
| 782 | 2589 std::string id = call.GetUriComponent("id", ""); |
| 2590 | |
| 2591 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); | |
| 2592 | |
| 2593 locker.GetDicom().SendPathValue(call.GetOutput(), call.GetTrailingUri()); | |
| 2594 } | |
| 2595 | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2596 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2597 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2598 static bool ExtractSharedTags(Json::Value& shared, |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2599 ServerContext& context, |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
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|
2600 const std::string& publicId) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2601 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2602 // Retrieve all the instances of this patient/study/series |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2603 typedef std::list<std::string> Instances; |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2604 Instances instances; |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2605 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2606 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2607 // Loop over the instances |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2608 bool isFirst = true; |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2609 shared = Json::objectValue; |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2610 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2611 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 2612 it != instances.end(); ++it) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2613 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2614 // Get the tags of the current instance, in the simplified format |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2615 Json::Value tags; |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2616 |
|
bd5659f2a50a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2617 try |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2618 { |
| 2124 | 2619 context.ReadDicomAsJson(tags, *it); |
|
959
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2620 } |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2621 catch (OrthancException&) |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
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|
2622 { |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2623 // Race condition: This instance has been removed since |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2624 // (*). Ignore this instance. |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
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|
2625 continue; |
|
bd5659f2a50a
fix possible race condition
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parents:
958
diff
changeset
|
2626 } |
|
bd5659f2a50a
fix possible race condition
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
958
diff
changeset
|
2627 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2628 if (tags.type() != Json::objectValue) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2629 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2630 return false; // Error |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2631 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2632 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2633 // Only keep the tags that are mapped to a string |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2634 Json::Value::Members members = tags.getMemberNames(); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2635 for (size_t i = 0; i < members.size(); i++) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2636 { |
|
960
abac5c83134f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2637 const Json::Value& tag = tags[members[i]]; |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2638 if (tag.type() != Json::objectValue || |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2639 tag["Type"].type() != Json::stringValue || |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2640 tag["Type"].asString() != "String") |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2641 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2642 tags.removeMember(members[i]); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2643 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2644 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2645 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2646 if (isFirst) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2647 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2648 // This is the first instance, keep its tags as such |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2649 shared = tags; |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2650 isFirst = false; |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2651 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2652 else |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2653 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2654 // Loop over all the members of the shared tags extracted so |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2655 // far. If the value of one of these tags does not match its |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2656 // value in the current instance, remove it. |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2657 members = shared.getMemberNames(); |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2658 for (size_t i = 0; i < members.size(); i++) |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2659 { |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2660 if (!tags.isMember(members[i]) || |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2661 tags[members[i]]["Value"].asString() != shared[members[i]]["Value"].asString()) |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2662 { |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2663 shared.removeMember(members[i]); |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2664 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2665 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2666 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2667 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2668 |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2669 return true; |
|
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2670 } |
|
abac5c83134f
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2671 |
|
abac5c83134f
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Sebastien Jodogne <s.jodogne@gmail.com>
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959
diff
changeset
|
2672 |
| 974 | 2673 static void GetSharedTags(RestApiGetCall& call) |
|
960
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diff
changeset
|
2674 { |
|
4416
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2675 if (call.IsDocumentation()) |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2676 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2677 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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4694
diff
changeset
|
2678 |
|
4416
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changeset
|
2679 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
|
0b27841950d5
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changeset
|
2680 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
0b27841950d5
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diff
changeset
|
2681 call.GetDocumentation() |
|
0b27841950d5
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diff
changeset
|
2682 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
0b27841950d5
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|
2683 .SetSummary("Get shared tags") |
|
0b27841950d5
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|
2684 .SetDescription("Extract the DICOM tags whose value is constant across all the child instances of " |
|
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diff
changeset
|
2685 "the DICOM " + r + " whose Orthanc identifier is provided in the URL") |
|
0b27841950d5
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changeset
|
2686 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
0b27841950d5
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changeset
|
2687 .AddAnswerType(MimeType_Json, "JSON object containing the values of the DICOM tags") |
|
0b27841950d5
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diff
changeset
|
2688 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/shared-tags", 5); |
|
0b27841950d5
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|
2689 return; |
|
0b27841950d5
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changeset
|
2690 } |
|
0b27841950d5
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diff
changeset
|
2691 |
|
960
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changeset
|
2692 ServerContext& context = OrthancRestApi::GetContext(call); |
|
abac5c83134f
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changeset
|
2693 std::string publicId = call.GetUriComponent("id", ""); |
|
abac5c83134f
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changeset
|
2694 |
|
abac5c83134f
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diff
changeset
|
2695 Json::Value sharedTags; |
|
abac5c83134f
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diff
changeset
|
2696 if (ExtractSharedTags(sharedTags, context, publicId)) |
|
abac5c83134f
simplified and extensive shared-tags
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changeset
|
2697 { |
|
abac5c83134f
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diff
changeset
|
2698 // Success: Send the value of the shared tags |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2699 AnswerDicomAsJson(call, sharedTags, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
960
abac5c83134f
simplified and extensive shared-tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
959
diff
changeset
|
2700 } |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2701 } |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2702 |
|
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2703 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2704 template <enum ResourceType resourceType, |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2705 enum DicomModule module> |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2706 static void GetModule(RestApiGetCall& call) |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2707 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2708 if (call.IsDocumentation()) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2709 { |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2710 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2711 std::string m; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2712 switch (module) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2713 { |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2714 case DicomModule_Patient: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2715 m = "patient"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2716 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2717 case DicomModule_Study: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2718 m = "study"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2719 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2720 case DicomModule_Series: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2721 m = "series"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2722 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2723 case DicomModule_Instance: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2724 m = "instance"; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2725 break; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2726 default: |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2727 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2728 } |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2729 |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2730 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2731 |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2732 call.GetDocumentation() |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2733 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2734 .SetSummary("Get " + m + " module" + std::string(resource == m ? "" : " of " + resource)) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2735 .SetDescription("Get the " + m + " module of the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2736 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
2737 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2738 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2739 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2740 .SetHttpGetSample(GetDocumentationSampleResource(resourceType) + "/" + (*call.GetFullUri().rbegin()), true); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2741 return; |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2742 } |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2743 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2744 if (!((resourceType == ResourceType_Patient && module == DicomModule_Patient) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2745 (resourceType == ResourceType_Study && module == DicomModule_Patient) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2746 (resourceType == ResourceType_Study && module == DicomModule_Study) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2747 (resourceType == ResourceType_Series && module == DicomModule_Series) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2748 (resourceType == ResourceType_Instance && module == DicomModule_Instance) || |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2749 (resourceType == ResourceType_Instance && module == DicomModule_Image))) |
|
1054
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2750 { |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2751 throw OrthancException(ErrorCode_NotImplemented); |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2752 } |
|
1701dcb6f554
Access patient module at the study level to cope with PatientID collisions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
974
diff
changeset
|
2753 |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2754 ServerContext& context = OrthancRestApi::GetContext(call); |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2755 std::string publicId = call.GetUriComponent("id", ""); |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2756 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2757 std::set<DicomTag> ignoreTagLength; |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
2758 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2759 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2760 typedef std::set<DicomTag> ModuleTags; |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2761 ModuleTags moduleTags; |
| 1368 | 2762 DicomTag::AddTagsForModule(moduleTags, module); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2763 |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2764 Json::Value tags; |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2765 |
|
81134ea872ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2766 if (resourceType != ResourceType_Instance) |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2767 { |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2768 // Retrieve all the instances of this patient/study/series |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
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|
2769 typedef std::list<std::string> Instances; |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
changeset
|
2770 Instances instances; |
|
81134ea872ff
retrieve values of modules
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parents:
960
diff
changeset
|
2771 context.GetIndex().GetChildInstances(instances, publicId); |
|
81134ea872ff
retrieve values of modules
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parents:
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diff
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|
2772 |
|
81134ea872ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2773 if (instances.empty()) |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
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|
2774 { |
|
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2775 return; // Error: No instance (should never happen) |
|
81134ea872ff
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parents:
960
diff
changeset
|
2776 } |
|
81134ea872ff
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parents:
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diff
changeset
|
2777 |
|
81134ea872ff
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diff
changeset
|
2778 // Select one child instance |
|
81134ea872ff
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diff
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|
2779 publicId = instances.front(); |
|
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diff
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|
2780 } |
|
81134ea872ff
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diff
changeset
|
2781 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2782 context.ReadDicomAsJson(tags, publicId, ignoreTagLength); |
|
963
81134ea872ff
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diff
changeset
|
2783 |
|
81134ea872ff
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diff
changeset
|
2784 // Filter the tags of the instance according to the module |
|
81134ea872ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2785 Json::Value result = Json::objectValue; |
| 1303 | 2786 for (ModuleTags::const_iterator tag = moduleTags.begin(); tag != moduleTags.end(); ++tag) |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2787 { |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2788 std::string s = tag->Format(); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
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960
diff
changeset
|
2789 if (tags.isMember(s)) |
|
81134ea872ff
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2790 { |
|
81134ea872ff
retrieve values of modules
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diff
changeset
|
2791 result[s] = tags[s]; |
|
81134ea872ff
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parents:
960
diff
changeset
|
2792 } |
|
81134ea872ff
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parents:
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diff
changeset
|
2793 } |
|
81134ea872ff
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2794 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2795 AnswerDicomAsJson(call, result, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
963
81134ea872ff
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parents:
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diff
changeset
|
2796 } |
|
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diff
changeset
|
2797 |
|
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diff
changeset
|
2798 |
| 1722 | 2799 namespace |
| 2800 { | |
| 2801 typedef std::list< std::pair<ResourceType, std::string> > LookupResults; | |
| 2802 } | |
| 2803 | |
| 2804 | |
| 2805 static void AccumulateLookupResults(LookupResults& result, | |
|
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2806 ServerIndex& index, |
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|
2807 const DicomTag& tag, |
|
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fix Orthanc.test_lookup
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2808 const std::string& value, |
|
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2809 ResourceType level) |
|
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2810 { |
|
3034
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|
2811 std::vector<std::string> tmp; |
|
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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|
2812 index.LookupIdentifierExact(tmp, level, tag, value); |
|
1719
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2813 |
|
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2814 for (size_t i = 0; i < tmp.size(); i++) |
|
1719
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fix Orthanc.test_lookup
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2815 { |
|
3034
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2816 result.push_back(std::make_pair(level, tmp[i])); |
|
1719
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2817 } |
|
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|
2818 } |
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2819 |
|
2b812969e136
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|
2820 |
|
1139
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|
2821 static void Lookup(RestApiPostCall& call) |
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|
2822 { |
| 4422 | 2823 if (call.IsDocumentation()) |
| 2824 { | |
| 2825 call.GetDocumentation() | |
| 2826 .SetTag("System") | |
| 2827 .SetSummary("Look for DICOM identifiers") | |
| 2828 .SetDescription("This URI can be used to convert one DICOM identifier to a list of matching Orthanc resources") | |
| 2829 .AddRequestType(MimeType_PlainText, "The DICOM identifier of interest (i.e. the value of `PatientID`, " | |
| 2830 "`StudyInstanceUID`, `SeriesInstanceUID`, or `SOPInstanceUID`)") | |
| 2831 .AddAnswerType(MimeType_Json, "JSON array containing a list of matching Orthanc resources, each item in the " | |
| 2832 "list corresponding to a JSON object with the fields `Type`, `ID` and `Path` identifying one " | |
| 2833 "DICOM resource that is stored by Orthanc"); | |
| 2834 return; | |
| 2835 } | |
| 2836 | |
|
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refactoring: IHttpHandler does not use std::string to hold the request body
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|
2837 std::string tag; |
|
8dc80ba768aa
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|
2838 call.BodyToString(tag); |
|
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|
2839 |
| 1722 | 2840 LookupResults resources; |
|
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|
2841 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
1719
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|
2842 AccumulateLookupResults(resources, index, DICOM_TAG_PATIENT_ID, tag, ResourceType_Patient); |
|
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|
2843 AccumulateLookupResults(resources, index, DICOM_TAG_STUDY_INSTANCE_UID, tag, ResourceType_Study); |
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|
2844 AccumulateLookupResults(resources, index, DICOM_TAG_SERIES_INSTANCE_UID, tag, ResourceType_Series); |
|
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|
2845 AccumulateLookupResults(resources, index, DICOM_TAG_SOP_INSTANCE_UID, tag, ResourceType_Instance); |
|
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|
2846 |
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|
2847 Json::Value result = Json::arrayValue; |
| 1722 | 2848 for (LookupResults::const_iterator |
|
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|
2849 it = resources.begin(); it != resources.end(); ++it) |
|
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|
2850 { |
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|
2851 ResourceType type = it->first; |
|
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|
2852 const std::string& id = it->second; |
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2853 |
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|
2854 Json::Value item = Json::objectValue; |
|
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|
2855 item["Type"] = EnumerationToString(type); |
|
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|
2856 item["ID"] = id; |
|
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|
2857 item["Path"] = GetBasePath(type, id); |
|
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|
2858 |
|
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|
2859 result.append(item); |
|
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2860 } |
|
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2861 |
|
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|
2862 call.GetOutput().AnswerJson(result); |
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2863 } |
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2864 |
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|
2865 |
|
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|
2866 namespace |
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2867 { |
|
3021
2cbafb5d5a62
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|
2868 class FindVisitor : public ServerContext::ILookupVisitor |
|
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2869 { |
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2870 private: |
|
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2871 bool isComplete_; |
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|
2872 std::list<std::string> resources_; |
|
5058
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Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
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|
2873 FindStorageAccessMode findStorageAccessMode_; |
|
4937
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|
2874 |
|
3f9b9865c8cc
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|
2875 // cache the data we used during lookup and that we could reuse when building the answers |
|
3f9b9865c8cc
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2876 std::map<std::string, std::string> instancesIds_; // the id of an instance for each found resource. |
|
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include requested tags from storage if needed
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|
2877 std::map<std::string, boost::shared_ptr<DicomMap> > resourcesMainDicomTags_; // all tags read from DB for a resource (current level and upper levels) |
|
5060
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|
2878 std::map<std::string, boost::shared_ptr<Json::Value> > resourcesDicomAsJson_; // the dicom-as-json for a resource |
|
4937
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2879 |
|
4697
569d9ef165b1
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|
2880 DicomToJsonFormat format_; |
|
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2881 |
|
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|
2882 public: |
|
5058
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Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
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|
2883 explicit FindVisitor(DicomToJsonFormat format, FindStorageAccessMode findStorageAccessMode) : |
|
4697
569d9ef165b1
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|
2884 isComplete_(false), |
|
5058
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|
2885 findStorageAccessMode_(findStorageAccessMode), |
|
4697
569d9ef165b1
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|
2886 format_(format) |
|
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2887 { |
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2888 } |
| 4205 | 2889 |
| 2890 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
|
3012
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2891 { |
|
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2892 return false; // (*) |
|
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2893 } |
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2894 |
| 4205 | 2895 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
|
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2896 { |
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2897 isComplete_ = true; // Unused information as of Orthanc 1.5.0 |
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2898 } |
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2899 |
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2900 virtual void Visit(const std::string& publicId, |
|
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2901 const std::string& instanceId, |
|
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2902 const DicomMap& mainDicomTags, |
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2903 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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2904 { |
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2905 resources_.push_back(publicId); |
|
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2906 instancesIds_[publicId] = instanceId; |
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|
2907 resourcesMainDicomTags_[publicId].reset(mainDicomTags.Clone()); |
|
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2908 if (dicomAsJson != NULL) |
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2909 { |
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|
2910 resourcesDicomAsJson_[publicId].reset(new Json::Value(*dicomAsJson)); // keep our own copy because we might reuse it between lookup and answers |
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2911 } |
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|
2912 else |
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2913 { |
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|
2914 resourcesDicomAsJson_[publicId] = boost::shared_ptr<Json::Value>(); |
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2915 } |
|
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2916 } |
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2917 |
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|
2918 void Answer(RestApiOutput& output, |
|
4935
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|
2919 ServerContext& context, |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2920 ResourceType level, |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2921 bool expand, |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2922 const std::set<DicomTag>& requestedTags) const |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2923 { |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
2924 AnswerListOfResources(output, context, resources_, instancesIds_, resourcesMainDicomTags_, resourcesDicomAsJson_, level, expand, format_, requestedTags, IsStorageAccessAllowedForAnswers(findStorageAccessMode_)); |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2925 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2926 }; |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2927 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2928 |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2929 |
| 1354 | 2930 static void Find(RestApiPostCall& call) |
| 2931 { | |
| 2998 | 2932 static const char* const KEY_CASE_SENSITIVE = "CaseSensitive"; |
| 2933 static const char* const KEY_EXPAND = "Expand"; | |
| 2934 static const char* const KEY_LEVEL = "Level"; | |
| 2935 static const char* const KEY_LIMIT = "Limit"; | |
| 2936 static const char* const KEY_QUERY = "Query"; | |
|
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2937 static const char* const KEY_REQUESTED_TAGS = "RequestedTags"; |
| 2998 | 2938 static const char* const KEY_SINCE = "Since"; |
| 2939 | |
| 4421 | 2940 if (call.IsDocumentation()) |
| 2941 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2942 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
2943 |
| 4421 | 2944 call.GetDocumentation() |
| 2945 .SetTag("System") | |
| 2946 .SetSummary("Look for local resources") | |
| 2947 .SetDescription("This URI can be used to perform a search on the content of the local Orthanc server, " | |
| 2948 "in a way that is similar to querying remote DICOM modalities using C-FIND SCU: " | |
| 2949 "https://book.orthanc-server.com/users/rest.html#performing-finds-within-orthanc") | |
| 2950 .SetRequestField(KEY_CASE_SENSITIVE, RestApiCallDocumentation::Type_Boolean, | |
| 2951 "Enable case-sensitive search for PN value representations (defaults to configuration option `CaseSensitivePN`)", false) | |
| 2952 .SetRequestField(KEY_EXPAND, RestApiCallDocumentation::Type_Boolean, | |
| 2953 "Also retrieve the content of the matching resources, not only their Orthanc identifiers", false) | |
| 2954 .SetRequestField(KEY_LEVEL, RestApiCallDocumentation::Type_String, | |
| 2955 "Level of the query (`Patient`, `Study`, `Series` or `Instance`)", true) | |
| 2956 .SetRequestField(KEY_LIMIT, RestApiCallDocumentation::Type_Number, | |
| 2957 "Limit the number of reported resources", false) | |
| 2958 .SetRequestField(KEY_SINCE, RestApiCallDocumentation::Type_Number, | |
| 2959 "Show only the resources since the provided index (in conjunction with `Limit`)", false) | |
|
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2960 .SetRequestField(KEY_REQUESTED_TAGS, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2961 "A list of DICOM tags to include in the response (applicable only if \"Expand\" is set to true). " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2962 "The tags requested tags are returned in the 'RequestedTags' field in the response. " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2963 "Note that, if you are requesting tags that are not listed in the Main Dicom Tags stored in DB, building the response " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2964 "might be slow since Orthanc will need to access the DICOM files. If not specified, Orthanc will return " |
|
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
2965 "all Main Dicom Tags to keep backward compatibility with Orthanc prior to 1.11.0.", false) |
| 4421 | 2966 .SetRequestField(KEY_QUERY, RestApiCallDocumentation::Type_JsonObject, |
| 2967 "Associative array containing the filter on the values of the DICOM tags", true) | |
| 2968 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " | |
| 2969 "about the reported resources (if `Expand` argument is `true`)"); | |
| 2970 return; | |
| 2971 } | |
| 2972 | |
| 1358 | 2973 ServerContext& context = OrthancRestApi::GetContext(call); |
| 1354 | 2974 |
| 2975 Json::Value request; | |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2976 if (!call.ParseJsonRequest(request) || |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2977 request.type() != Json::objectValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2978 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2979 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2980 "The body must contain a JSON object"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2981 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2982 else if (!request.isMember(KEY_LEVEL) || |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2983 request[KEY_LEVEL].type() != Json::stringValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2984 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2985 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2986 "Field \"" + std::string(KEY_LEVEL) + "\" is missing, or should be a string"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2987 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2988 else if (!request.isMember(KEY_QUERY) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2989 request[KEY_QUERY].type() != Json::objectValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2990 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2991 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2992 "Field \"" + std::string(KEY_QUERY) + "\" is missing, or should be a JSON object"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2993 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2994 else if (request.isMember(KEY_CASE_SENSITIVE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2995 request[KEY_CASE_SENSITIVE].type() != Json::booleanValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2996 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2997 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2998 "Field \"" + std::string(KEY_CASE_SENSITIVE) + "\" should be a Boolean"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
2999 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3000 else if (request.isMember(KEY_LIMIT) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3001 request[KEY_LIMIT].type() != Json::intValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3002 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3003 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3004 "Field \"" + std::string(KEY_LIMIT) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3005 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3006 else if (request.isMember(KEY_SINCE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3007 request[KEY_SINCE].type() != Json::intValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3008 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3009 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3010 "Field \"" + std::string(KEY_SINCE) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3011 } |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3012 else if (request.isMember(KEY_REQUESTED_TAGS) && |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3013 request[KEY_REQUESTED_TAGS].type() != Json::arrayValue) |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3014 { |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3015 throw OrthancException(ErrorCode_BadRequest, |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3016 "Field \"" + std::string(KEY_REQUESTED_TAGS) + "\" should be an array"); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3017 } |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3018 else |
| 1354 | 3019 { |
| 3020 bool expand = false; | |
| 2998 | 3021 if (request.isMember(KEY_EXPAND)) |
| 1354 | 3022 { |
| 2998 | 3023 expand = request[KEY_EXPAND].asBool(); |
| 1354 | 3024 } |
| 3025 | |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3026 bool caseSensitive = false; |
| 2998 | 3027 if (request.isMember(KEY_CASE_SENSITIVE)) |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3028 { |
| 2998 | 3029 caseSensitive = request[KEY_CASE_SENSITIVE].asBool(); |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3030 } |
|
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1361
diff
changeset
|
3031 |
| 1758 | 3032 size_t limit = 0; |
| 2998 | 3033 if (request.isMember(KEY_LIMIT)) |
| 1758 | 3034 { |
| 2998 | 3035 int tmp = request[KEY_LIMIT].asInt(); |
| 1847 | 3036 if (tmp < 0) |
| 1758 | 3037 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3038 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3039 "Field \"" + std::string(KEY_LIMIT) + "\" should be a positive integer"); |
| 1758 | 3040 } |
| 1847 | 3041 |
| 3042 limit = static_cast<size_t>(tmp); | |
| 1758 | 3043 } |
| 3044 | |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3045 size_t since = 0; |
| 2998 | 3046 if (request.isMember(KEY_SINCE)) |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3047 { |
| 2998 | 3048 int tmp = request[KEY_SINCE].asInt(); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3049 if (tmp < 0) |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3050 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3051 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3052 "Field \"" + std::string(KEY_SINCE) + "\" should be a positive integer"); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3053 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3054 |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3055 since = static_cast<size_t>(tmp); |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3056 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
3057 |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3058 std::set<DicomTag> requestedTags; |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3059 |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3060 if (request.isMember(KEY_REQUESTED_TAGS)) |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3061 { |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3062 FromDcmtkBridge::ParseListOfTags(requestedTags, request[KEY_REQUESTED_TAGS]); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3063 } |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3064 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
3065 ResourceType level = StringToResourceType(request[KEY_LEVEL].asCString()); |
| 1360 | 3066 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
3067 DatabaseLookup query; |
| 1358 | 3068 |
| 2998 | 3069 Json::Value::Members members = request[KEY_QUERY].getMemberNames(); |
| 1354 | 3070 for (size_t i = 0; i < members.size(); i++) |
| 3071 { | |
| 2998 | 3072 if (request[KEY_QUERY][members[i]].type() != Json::stringValue) |
| 1354 | 3073 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3074 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2998
diff
changeset
|
3075 "Tag \"" + members[i] + "\" should be associated with a string"); |
| 1354 | 3076 } |
| 3077 | |
|
3163
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3078 const std::string value = request[KEY_QUERY][members[i]].asString(); |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3079 |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3080 if (!value.empty()) |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3081 { |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3082 // An empty string corresponds to an universal constraint, |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3083 // so we ignore it. This mimics the behavior of class |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3084 // "OrthancFindRequestHandler" |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3085 query.AddRestConstraint(FromDcmtkBridge::ParseTag(members[i]), |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3086 value, caseSensitive, true); |
|
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3094
diff
changeset
|
3087 } |
|
1361
94ffb597d297
refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1360
diff
changeset
|
3088 } |
| 2876 | 3089 |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3090 FindVisitor visitor(OrthancRestApi::GetDicomFormat(request, DicomToJsonFormat_Human), context.GetFindStorageAccessMode()); |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3027
diff
changeset
|
3091 context.Apply(visitor, query, level, since, limit); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3092 visitor.Answer(call.GetOutput(), context, level, expand, requestedTags); |
| 1354 | 3093 } |
| 3094 } | |
| 3095 | |
| 3096 | |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3097 template <enum ResourceType start, |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3098 enum ResourceType end> |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3099 static void GetChildResources(RestApiGetCall& call) |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3100 { |
| 4415 | 3101 if (call.IsDocumentation()) |
| 3102 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3103 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3104 OrthancRestApi::DocumentRequestedTags(call); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3105 |
| 4415 | 3106 const std::string children = GetResourceTypeText(end, true /* plural */, false /* lower case */); |
| 3107 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 3108 call.GetDocumentation() | |
| 3109 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 3110 .SetSummary("Get child " + children) | |
| 3111 .SetDescription("Get detailed information about the child " + children + " of the DICOM " + | |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3112 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 3113 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 3114 .AddAnswerType(MimeType_Json, "JSON array containing information about the child DICOM " + children) | |
| 3115 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + children, 5); | |
| 3116 return; | |
| 3117 } | |
| 3118 | |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3119 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3120 |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3121 std::set<DicomTag> requestedTags; |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3122 OrthancRestApi::GetRequestedTags(requestedTags, call); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3123 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3124 std::list<std::string> a, b, c; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3125 a.push_back(call.GetUriComponent("id", "")); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3126 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3127 ResourceType type = start; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3128 while (type != end) |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3129 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3130 b.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3131 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3132 for (std::list<std::string>::const_iterator |
| 1303 | 3133 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3134 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3135 index.GetChildren(c, *it); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3136 b.splice(b.begin(), c); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3137 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3138 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
3139 type = GetChildResourceType(type); |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3140 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3141 a.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3142 a.splice(a.begin(), b); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3143 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3144 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3145 Json::Value result = Json::arrayValue; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3146 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3147 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3148 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3149 for (std::list<std::string>::const_iterator |
| 1303 | 3150 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3151 { |
| 4554 | 3152 Json::Value resource; |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3153 if (OrthancRestApi::GetContext(call).ExpandResource(resource, *it, end, format, requestedTags, true /* allowStorageAccess */)) |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3154 { |
| 4554 | 3155 result.append(resource); |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3156 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3157 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3158 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3159 call.GetOutput().AnswerJson(result); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3160 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3161 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3162 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3163 static void GetChildInstancesTags(RestApiGetCall& call) |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3164 { |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3165 if (call.IsDocumentation()) |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3166 { |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3167 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3168 |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3169 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3170 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3171 call.GetDocumentation() |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3172 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3173 .SetSummary("Get tags of instances") |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3174 .SetDescription("Get the tags of all the child instances of the DICOM " + r + |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3175 " whose Orthanc identifier is provided in the URL") |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3176 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
3177 .SetHttpGetArgument(IGNORE_LENGTH, RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4416
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3178 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3179 .AddAnswerType(MimeType_Json, "JSON object associating the Orthanc identifiers of the instances, with the values of their DICOM tags") |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3180 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/instances-tags", 5); |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3181 return; |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3182 } |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3183 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3184 ServerContext& context = OrthancRestApi::GetContext(call); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3185 std::string publicId = call.GetUriComponent("id", ""); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3186 DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full); |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3187 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3188 std::set<DicomTag> ignoreTagLength; |
|
4722
2b4da0ee6b73
added missing documentation of "ignore-length" in "/instances/{id}/tags"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4716
diff
changeset
|
3189 ParseSetOfTags(ignoreTagLength, call, IGNORE_LENGTH); |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3190 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3191 // Retrieve all the instances of this patient/study/series |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3192 typedef std::list<std::string> Instances; |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3193 Instances instances; |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3194 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3195 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3196 |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3197 Json::Value result = Json::objectValue; |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3198 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3199 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 3200 it != instances.end(); ++it) |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3201 { |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3202 Json::Value full; |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
3203 context.ReadDicomAsJson(full, *it, ignoreTagLength); |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3204 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
3205 if (format != DicomToJsonFormat_Full) |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3206 { |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3207 Json::Value simplified; |
|
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4045
diff
changeset
|
3208 Toolbox::SimplifyDicomAsJson(simplified, full, format); |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3209 result[*it] = simplified; |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
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1146
diff
changeset
|
3210 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3211 else |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3212 { |
|
1201
09aa7c126be9
URIs 'instance-tags' now indexed by the instance IDs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1172
diff
changeset
|
3213 result[*it] = full; |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3214 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3215 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3216 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3217 call.GetOutput().AnswerJson(result); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3218 } |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3219 |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3220 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3221 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3222 template <enum ResourceType start, |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3223 enum ResourceType end> |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3224 static void GetParentResource(RestApiGetCall& call) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3225 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3226 assert(start > end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3227 |
| 4415 | 3228 if (call.IsDocumentation()) |
| 3229 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3230 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3231 OrthancRestApi::DocumentRequestedTags(call); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3232 |
| 4415 | 3233 const std::string parent = GetResourceTypeText(end, false /* plural */, false /* lower case */); |
| 3234 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 3235 call.GetDocumentation() | |
| 3236 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 3237 .SetSummary("Get parent " + parent) | |
| 3238 .SetDescription("Get detailed information about the parent " + parent + " of the DICOM " + | |
|
4416
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4415
diff
changeset
|
3239 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 3240 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 3241 .AddAnswerType(MimeType_Json, "Information about the parent DICOM " + parent) | |
| 3242 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + parent, 10); | |
| 3243 return; | |
| 3244 } | |
| 3245 | |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3246 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3247 |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3248 std::set<DicomTag> requestedTags; |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3249 OrthancRestApi::GetRequestedTags(requestedTags, call); |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3250 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3251 std::string current = call.GetUriComponent("id", ""); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3252 ResourceType currentType = start; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3253 while (currentType > end) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3254 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3255 std::string parent; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3256 if (!index.LookupParent(parent, current)) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3257 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3258 // Error that could happen if the resource gets deleted by |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3259 // another concurrent call |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1276
diff
changeset
|
3260 return; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3261 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3262 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3263 current = parent; |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
1509
diff
changeset
|
3264 currentType = GetParentResourceType(currentType); |
|
1281
8dac11c78d71
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diff
changeset
|
3265 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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1276
diff
changeset
|
3266 |
|
8dac11c78d71
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parents:
1276
diff
changeset
|
3267 assert(currentType == end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3268 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3269 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Human); |
|
569d9ef165b1
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parents:
4694
diff
changeset
|
3270 |
| 4554 | 3271 Json::Value resource; |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3272 if (OrthancRestApi::GetContext(call).ExpandResource(resource, current, end, format, requestedTags, true /* allowStorageAccess */)) |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3273 { |
| 4554 | 3274 call.GetOutput().AnswerJson(resource); |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3275 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3276 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
3277 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
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diff
changeset
|
3278 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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parents:
1555
diff
changeset
|
3279 static void ExtractPdf(RestApiGetCall& call) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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diff
changeset
|
3280 { |
| 4407 | 3281 if (call.IsDocumentation()) |
| 3282 { | |
| 3283 call.GetDocumentation() | |
| 3284 .SetTag("Instances") | |
| 3285 .SetSummary("Get embedded PDF") | |
| 3286 .SetDescription("Get the PDF file that is embedded in one DICOM instance. " | |
| 3287 "If the DICOM instance doesn't contain the `EncapsulatedDocument` tag or if the " | |
| 3288 "`MIMETypeOfEncapsulatedDocument` tag doesn't correspond to the PDF type, a `404` HTTP error is raised.") | |
| 3289 .SetUriArgument("id", "Orthanc identifier of the instance interest") | |
| 3290 .AddAnswerType(MimeType_Pdf, "PDF file"); | |
| 3291 return; | |
| 3292 } | |
| 3293 | |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3294 const std::string id = call.GetUriComponent("id", ""); |
|
b8dc2f855a83
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diff
changeset
|
3295 std::string pdf; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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diff
changeset
|
3296 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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diff
changeset
|
3297 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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1555
diff
changeset
|
3298 if (locker.GetDicom().ExtractPdf(pdf)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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1555
diff
changeset
|
3299 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
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2905
diff
changeset
|
3300 call.GetOutput().AnswerBuffer(pdf, MimeType_Pdf); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3301 return; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3302 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3303 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3304 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3305 |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3306 static void OrderSlices(RestApiGetCall& call) |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3307 { |
| 4421 | 3308 if (call.IsDocumentation()) |
| 3309 { | |
| 3310 call.GetDocumentation() | |
| 3311 .SetDeprecated() | |
| 3312 .SetTag("Series") | |
| 3313 .SetSummary("Order the slices") | |
| 3314 .SetDescription("Sort the instances and frames (slices) of the DICOM series whose Orthanc identifier is provided in the URL. " | |
| 3315 "This URI is essentially used by the Orthanc Web viewer and by the Osimis Web viewer.") | |
| 3316 .SetUriArgument("id", "Orthanc identifier of the series of interest") | |
| 3317 .SetAnswerField("Dicom", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 3318 "Ordered list of paths to DICOM instances") | |
| 3319 .SetAnswerField("Slices", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 3320 "Ordered list of paths to frames. It is recommended to use this field, as it is also valid " | |
| 3321 "in the case of multiframe images.") | |
| 3322 .SetAnswerField("SlicesShort", RestApiCallDocumentation::Type_JsonListOfObjects, | |
| 3323 "Same information as the `Slices` field, but in a compact form") | |
| 3324 .SetAnswerField("Type", RestApiCallDocumentation::Type_String, | |
| 3325 "Can be `Volume` (for 3D volumes) or `Sequence` (notably for cine images)") | |
| 3326 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/series/1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0/ordered-slices", 10); | |
| 3327 return; | |
| 3328 } | |
| 3329 | |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3330 const std::string id = call.GetUriComponent("id", ""); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3331 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3332 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3333 SliceOrdering ordering(index, id); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3334 |
|
1703
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3335 Json::Value result; |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3336 ordering.Format(result); |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
3337 call.GetOutput().AnswerJson(result); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3338 } |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3339 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3340 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3341 static void GetInstanceHeader(RestApiGetCall& call) |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3342 { |
| 4404 | 3343 if (call.IsDocumentation()) |
| 3344 { | |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3345 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Full); |
| 4404 | 3346 call.GetDocumentation() |
| 3347 .SetTag("Instances") | |
| 3348 .SetSummary("Get DICOM meta-header") | |
| 3349 .SetDescription("Get the DICOM tags in the meta-header of the DICOM instance. By default, the `full` format is used, which " | |
| 3350 "combines hexadecimal tags with human-readable description.") | |
| 3351 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 3352 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 3353 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/header", true); | |
| 3354 return; | |
| 3355 } | |
| 3356 | |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3357 ServerContext& context = OrthancRestApi::GetContext(call); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3358 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3359 std::string publicId = call.GetUriComponent("id", ""); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3360 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3361 std::string dicomContent; |
|
4792
434843934307
Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents:
4777
diff
changeset
|
3362 context.ReadDicomForHeader(dicomContent, publicId); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3363 |
|
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3364 // TODO Consider using "DicomMap::ParseDicomMetaInformation()" to |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3365 // speed up things here |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
3366 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3367 ParsedDicomFile dicom(dicomContent); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3368 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3369 Json::Value header; |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
3370 OrthancConfiguration::DefaultDicomHeaderToJson(header, dicom); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3371 |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3372 AnswerDicomAsJson(call, header, OrthancRestApi::GetDicomFormat(call, DicomToJsonFormat_Full)); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3373 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3374 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3375 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3376 static void InvalidateTags(RestApiPostCall& call) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3377 { |
| 4420 | 3378 if (call.IsDocumentation()) |
| 3379 { | |
| 3380 call.GetDocumentation() | |
| 3381 .SetTag("System") | |
| 3382 .SetSummary("Invalidate DICOM-as-JSON summaries") | |
| 3383 .SetDescription("Remove all the attachments of the type \"DICOM-as-JSON\" that are associated will all the " | |
| 3384 "DICOM instances stored in Orthanc. These summaries will be automatically re-created on the next access. " | |
| 3385 "This is notably useful after changes to the `Dictionary` configuration option. " | |
| 3386 "https://book.orthanc-server.com/faq/orthanc-storage.html#storage-area"); | |
| 3387 return; | |
| 3388 } | |
| 3389 | |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3390 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3391 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3392 // Loop over the instances, grouping them by parent studies so as |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3393 // to avoid large memory consumption |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3394 std::list<std::string> studies; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3395 index.GetAllUuids(studies, ResourceType_Study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3396 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3397 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3398 study = studies.begin(); study != studies.end(); ++study) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3399 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3400 std::list<std::string> instances; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3401 index.GetChildInstances(instances, *study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3402 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3403 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3404 instance = instances.begin(); instance != instances.end(); ++instance) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3405 { |
|
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
3406 index.DeleteAttachment(*instance, FileContentType_DicomAsJson, |
|
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4627
diff
changeset
|
3407 false /* no revision checks */, -1 /* dummy */, "" /* dummy */); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3408 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3409 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3410 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3411 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3412 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3413 |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3414 void DocumentReconstructFilesField(RestApiPostCall& call) |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3415 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3416 call.GetDocumentation() |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3417 .SetRequestField(RECONSTRUCT_FILES, RestApiCallDocumentation::Type_Boolean, |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3418 "Also reconstruct the files of the resources (e.g: apply IngestTranscoding, StorageCompression). " |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3419 "'false' by default. (New in Orthanc 1.11.0)", false); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3420 } |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3421 |
| 4994 | 3422 bool GetReconstructFilesField(const RestApiPostCall& call) |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3423 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3424 bool reconstructFiles = false; |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3425 Json::Value request; |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3426 |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3427 if (call.GetBodySize() > 0 && call.ParseJsonRequest(request) && request.isMember(RECONSTRUCT_FILES)) // allow "" payload to keep backward compatibility |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3428 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3429 if (!request[RECONSTRUCT_FILES].isBool()) |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3430 { |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3431 throw OrthancException(ErrorCode_BadFileFormat, |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3432 "The field " + std::string(RECONSTRUCT_FILES) + " must contain a Boolean"); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3433 } |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3434 |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3435 reconstructFiles = request[RECONSTRUCT_FILES].asBool(); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3436 } |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3437 |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3438 return reconstructFiles; |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3439 } |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3440 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3441 template <enum ResourceType type> |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3442 static void ReconstructResource(RestApiPostCall& call) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3443 { |
| 4420 | 3444 if (call.IsDocumentation()) |
| 3445 { | |
| 3446 const std::string resource = GetResourceTypeText(type, false /* plural */, false /* lower case */); | |
| 3447 call.GetDocumentation() | |
| 3448 .SetTag(GetResourceTypeText(type, true /* plural */, true /* upper case */)) | |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3449 .SetSummary("Reconstruct tags & optionally files of " + resource) |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3450 .SetDescription("Reconstruct the main DICOM tags in DB of the " + resource + " whose Orthanc identifier is provided " |
| 4420 | 3451 "in the URL. This is useful if child studies/series/instances have inconsistent values for " |
| 3452 "higher-level tags, in order to force Orthanc to use the value from the resource of interest. " | |
| 3453 "Beware that this is a time-consuming operation, as all the children DICOM instances will be " | |
| 3454 "parsed again, and the Orthanc index will be updated accordingly.") | |
| 3455 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); | |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3456 DocumentReconstructFilesField(call); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3457 |
| 4420 | 3458 return; |
| 3459 } | |
| 3460 | |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3461 ServerContext& context = OrthancRestApi::GetContext(call); |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3462 ServerToolbox::ReconstructResource(context, call.GetUriComponent("id", ""), GetReconstructFilesField(call)); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3463 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3464 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3465 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3466 |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3467 static void ReconstructAllResources(RestApiPostCall& call) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3468 { |
| 4420 | 3469 if (call.IsDocumentation()) |
| 3470 { | |
| 3471 call.GetDocumentation() | |
| 3472 .SetTag("System") | |
| 3473 .SetSummary("Reconstruct all the index") | |
| 3474 .SetDescription("Reconstruct the index of all the tags of all the DICOM instances that are stored in Orthanc. " | |
| 3475 "This is notably useful after the deletion of resources whose children resources have inconsistent " | |
| 3476 "values with their sibling resources. Beware that this is a highly time-consuming operation, " | |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3477 "as all the DICOM instances will be parsed again, and as all the Orthanc index will be regenerated. " |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3478 "If you have a large database to process, it is advised to use the Housekeeper plugin to perform " |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3479 "this action resource by resource"); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3480 DocumentReconstructFilesField(call); |
|
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3481 |
| 4420 | 3482 return; |
| 3483 } | |
| 3484 | |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3485 ServerContext& context = OrthancRestApi::GetContext(call); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3486 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3487 std::list<std::string> studies; |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3488 context.GetIndex().GetAllUuids(studies, ResourceType_Study); |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3489 bool reconstructFiles = GetReconstructFilesField(call); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3490 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3491 for (std::list<std::string>::const_iterator |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3492 study = studies.begin(); study != studies.end(); ++study) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3493 { |
|
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
3494 ServerToolbox::ReconstructResource(context, *study, reconstructFiles); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3495 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3496 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
3497 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3498 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3499 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3500 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3501 static void GetBulkChildren(std::set<std::string>& target, |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3502 ServerIndex& index, |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3503 const std::set<std::string>& source) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3504 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3505 target.clear(); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3506 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3507 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3508 it = source.begin(); it != source.end(); ++it) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3509 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3510 std::list<std::string> children; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3511 index.GetChildren(children, *it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3512 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3513 for (std::list<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3514 child = children.begin(); child != children.end(); ++child) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3515 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3516 target.insert(*child); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3517 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3518 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3519 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3520 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3521 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3522 static void AddMetadata(Json::Value& target, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3523 ServerIndex& index, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3524 const std::string& resource, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3525 ResourceType level) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3526 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3527 target = Json::objectValue; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3528 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3529 std::map<MetadataType, std::string> content; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3530 index.GetAllMetadata(content, resource, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3531 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3532 for (std::map<MetadataType, std::string>::const_iterator |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3533 it = content.begin(); it != content.end(); ++it) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3534 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3535 target[EnumerationToString(it->first)] = it->second; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3536 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3537 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3538 |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3539 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3540 static void BulkContent(RestApiPostCall& call) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3541 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3542 static const char* const LEVEL = "Level"; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3543 static const char* const METADATA = "Metadata"; |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3544 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3545 if (call.IsDocumentation()) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3546 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3547 OrthancRestApi::DocumentDicomFormat(call, DicomToJsonFormat_Human); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3548 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3549 call.GetDocumentation() |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3550 .SetTag("System") |
| 4879 | 3551 .SetSummary("Describe a set of resources") |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3552 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3553 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true) |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3554 .SetRequestField(LEVEL, RestApiCallDocumentation::Type_String, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3555 "This optional argument specifies the level of interest (can be `Patient`, `Study`, `Series` or " |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3556 "`Instance`). Orthanc will loop over the items inside `Resources`, and explore upward or " |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3557 "downward in the DICOM hierarchy in order to find the level of interest.", false) |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3558 .SetRequestField(METADATA, RestApiCallDocumentation::Type_Boolean, |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3559 "If set to `true` (default value), the metadata associated with the resources will also be retrieved.", false) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3560 .SetDescription("Get the content all the DICOM patients, studies, series or instances " |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3561 "whose identifiers are provided in the `Resources` field, in one single call."); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3562 return; |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3563 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3564 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3565 Json::Value request; |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3566 if (!call.ParseJsonRequest(request) || |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3567 request.type() != Json::objectValue) |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3568 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3569 throw OrthancException(ErrorCode_BadRequest, |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3570 "The body must contain a JSON object"); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3571 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3572 else |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3573 { |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3574 const DicomToJsonFormat format = OrthancRestApi::GetDicomFormat(request, DicomToJsonFormat_Human); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3575 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3576 bool metadata = true; |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3577 if (request.isMember(METADATA)) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3578 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3579 metadata = SerializationToolbox::ReadBoolean(request, METADATA); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3580 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3581 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3582 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3583 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3584 Json::Value answer = Json::arrayValue; |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3585 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3586 if (request.isMember(LEVEL)) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3587 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3588 // Complex case: Need to explore the DICOM hierarchy |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3589 ResourceType level = StringToResourceType(SerializationToolbox::ReadString(request, LEVEL).c_str()); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3590 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3591 std::set<std::string> resources; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3592 SerializationToolbox::ReadSetOfStrings(resources, request, "Resources"); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3593 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3594 std::set<std::string> interest; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3595 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3596 assert(ResourceType_Patient < ResourceType_Study && |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3597 ResourceType_Study < ResourceType_Series && |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3598 ResourceType_Series < ResourceType_Instance); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3599 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3600 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3601 it = resources.begin(); it != resources.end(); ++it) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3602 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3603 ResourceType type; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3604 if (index.LookupResourceType(type, *it)) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3605 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3606 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3607 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3608 // This resource is already from the level of interest |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3609 interest.insert(*it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3610 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3611 else if (type < level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3612 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3613 // Need to explore children |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3614 std::set<std::string> current; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3615 current.insert(*it); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3616 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3617 for (;;) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3618 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3619 std::set<std::string> children; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3620 GetBulkChildren(children, index, current); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3621 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3622 type = GetChildResourceType(type); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3623 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3624 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3625 for (std::set<std::string>::const_iterator |
| 4716 | 3626 it2 = children.begin(); it2 != children.end(); ++it2) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3627 { |
| 4716 | 3628 interest.insert(*it2); |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3629 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3630 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3631 break; // done |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3632 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3633 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3634 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3635 current.swap(children); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3636 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3637 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3638 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3639 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3640 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3641 // Need to explore parents |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3642 std::string current = *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3643 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3644 for (;;) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3645 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3646 std::string parent; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3647 if (index.LookupParent(parent, current)) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3648 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3649 type = GetParentResourceType(type); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3650 if (type == level) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3651 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3652 interest.insert(parent); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3653 break; // done |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3654 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3655 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3656 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3657 current = parent; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3658 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3659 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3660 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3661 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3662 break; // The resource has been deleted during the exploration |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3663 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3664 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3665 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3666 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3667 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3668 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3669 CLOG(INFO, HTTP) << "Unknown resource during a bulk content retrieval: " << *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3670 } |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3671 } |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3672 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3673 for (std::set<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3674 it = interest.begin(); it != interest.end(); ++it) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3675 { |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3676 Json::Value item; |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3677 std::set<DicomTag> emptyRequestedTags; // not supported for bulk content |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3678 |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3679 if (OrthancRestApi::GetContext(call).ExpandResource(item, *it, level, format, emptyRequestedTags, true /* allowStorageAccess */)) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3680 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3681 if (metadata) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3682 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3683 AddMetadata(item[METADATA], index, *it, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3684 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3685 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3686 answer.append(item); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3687 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3688 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3689 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3690 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3691 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3692 // Simple case: We return the queried resources as such |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3693 std::list<std::string> resources; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3694 SerializationToolbox::ReadListOfStrings(resources, request, "Resources"); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3695 |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3696 for (std::list<std::string>::const_iterator |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3697 it = resources.begin(); it != resources.end(); ++it) |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3698 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3699 ResourceType level; |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3700 Json::Value item; |
|
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3701 std::set<DicomTag> emptyRequestedTags; // not supported for bulk content |
|
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
3702 |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3703 if (index.LookupResourceType(level, *it) && |
|
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5054
diff
changeset
|
3704 OrthancRestApi::GetContext(call).ExpandResource(item, *it, level, format, emptyRequestedTags, true /* allowStorageAccess */)) |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3705 { |
|
4714
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3706 if (metadata) |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3707 { |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3708 AddMetadata(item[METADATA], index, *it, level); |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3709 } |
|
8ffe2fdb541f
added argument "Metadata" to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4699
diff
changeset
|
3710 |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3711 answer.append(item); |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3712 } |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3713 else |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3714 { |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3715 CLOG(INFO, HTTP) << "Unknown resource during a bulk content retrieval: " << *it; |
|
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3716 } |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3717 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3718 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3719 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3720 call.GetOutput().AnswerJson(answer); |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3721 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3722 } |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3723 |
|
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3724 |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3725 static void BulkDelete(RestApiPostCall& call) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3726 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3727 if (call.IsDocumentation()) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3728 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3729 call.GetDocumentation() |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3730 .SetTag("System") |
| 4879 | 3731 .SetSummary("Delete a set of resources") |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3732 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings, |
|
4699
facea16b055b
added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4698
diff
changeset
|
3733 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true) |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3734 .SetDescription("Delete all the DICOM patients, studies, series or instances " |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3735 "whose identifiers are provided in the `Resources` field."); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3736 return; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3737 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3738 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3739 ServerContext& context = OrthancRestApi::GetContext(call); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3740 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3741 Json::Value request; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3742 if (!call.ParseJsonRequest(request) || |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3743 request.type() != Json::objectValue) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3744 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3745 throw OrthancException(ErrorCode_BadRequest, |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3746 "The body must contain a JSON object"); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3747 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3748 else |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3749 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3750 std::set<std::string> resources; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3751 SerializationToolbox::ReadSetOfStrings(resources, request, "Resources"); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3752 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3753 for (std::set<std::string>::const_iterator |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3754 it = resources.begin(); it != resources.end(); ++it) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3755 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3756 ResourceType type; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3757 Json::Value remainingAncestor; // Unused |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3758 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3759 if (!context.GetIndex().LookupResourceType(type, *it) || |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3760 !context.DeleteResource(remainingAncestor, *it, type)) |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3761 { |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3762 CLOG(INFO, HTTP) << "Unknown resource during a bulk deletion: " << *it; |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3763 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3764 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3765 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3766 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3767 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3768 } |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3769 |
|
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3770 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3771 void OrthancRestApi::RegisterResources() |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3772 { |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3773 Register("/instances", ListResources<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3774 Register("/patients", ListResources<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3775 Register("/series", ListResources<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3776 Register("/studies", ListResources<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3777 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3778 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3779 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3780 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3781 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3782 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3783 Register("/series/{id}", GetSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3784 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3785 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3786 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3787 Register("/instances/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3788 Register("/patients/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3789 Register("/studies/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3790 Register("/series/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3791 |
|
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3792 Register("/patients/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3793 Register("/series/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
3794 Register("/studies/{id}/shared-tags", GetSharedTags); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
3795 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3796 Register("/instances/{id}/module", GetModule<ResourceType_Instance, DicomModule_Instance>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3797 Register("/patients/{id}/module", GetModule<ResourceType_Patient, DicomModule_Patient>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3798 Register("/series/{id}/module", GetModule<ResourceType_Series, DicomModule_Series>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3799 Register("/studies/{id}/module", GetModule<ResourceType_Study, DicomModule_Study>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
3800 Register("/studies/{id}/module-patient", GetModule<ResourceType_Study, DicomModule_Patient>); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
3801 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3802 Register("/instances/{id}/file", GetInstanceFile); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3803 Register("/instances/{id}/export", ExportInstanceFile); |
|
4697
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3804 Register("/instances/{id}/tags", GetInstanceTags); |
|
569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
3805 Register("/instances/{id}/simplified-tags", GetInstanceSimplifiedTags); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3806 Register("/instances/{id}/frames", ListFrames); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3807 |
|
4424
83371ccdfe80
openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4422
diff
changeset
|
3808 Register("/instances/{id}/frames/{frame}", RestApi::AutoListChildren); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3809 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
3810 Register("/instances/{id}/frames/{frame}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3811 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3812 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3813 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
3814 Register("/instances/{id}/frames/{frame}/matlab", GetMatlabImage); |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
3815 Register("/instances/{id}/frames/{frame}/raw", GetRawFrame<false>); |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
3816 Register("/instances/{id}/frames/{frame}/raw.gz", GetRawFrame<true>); |
|
4902
df86d2505df8
Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
3817 Register("/instances/{id}/frames/{frame}/numpy", GetNumpyFrame); // New in Orthanc 1.10.0 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
3818 Register("/instances/{id}/pdf", ExtractPdf); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3819 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
3820 Register("/instances/{id}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3821 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3822 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3823 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
3824 Register("/instances/{id}/matlab", GetMatlabImage); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
3825 Register("/instances/{id}/header", GetInstanceHeader); |
|
4902
df86d2505df8
Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
3826 Register("/instances/{id}/numpy", GetNumpyInstance); // New in Orthanc 1.10.0 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3827 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3828 Register("/patients/{id}/protected", IsProtectedPatient); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3829 Register("/patients/{id}/protected", SetPatientProtection); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3830 |
| 4409 | 3831 std::vector<std::string> resourceTypes; |
| 3832 resourceTypes.push_back("patients"); | |
| 3833 resourceTypes.push_back("studies"); | |
| 3834 resourceTypes.push_back("series"); | |
| 3835 resourceTypes.push_back("instances"); | |
| 3836 | |
| 3837 for (size_t i = 0; i < resourceTypes.size(); i++) | |
| 3838 { | |
| 3839 Register("/" + resourceTypes[i] + "/{id}/metadata", ListMetadata); | |
| 3840 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", DeleteMetadata); | |
| 3841 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", GetMetadata); | |
| 3842 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", SetMetadata); | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3843 |
| 4409 | 3844 Register("/" + resourceTypes[i] + "/{id}/attachments", ListAttachments); |
| 3845 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", DeleteAttachment); | |
| 3846 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", GetAttachmentOperations); | |
| 3847 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", UploadAttachment); | |
| 3848 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compress", ChangeAttachmentCompression<CompressionType_ZlibWithSize>); | |
| 3849 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-data", GetAttachmentData<0>); | |
| 3850 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-md5", GetAttachmentCompressedMD5); | |
| 3851 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-size", GetAttachmentCompressedSize); | |
| 3852 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/data", GetAttachmentData<1>); | |
| 3853 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/is-compressed", IsAttachmentCompressed); | |
| 3854 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/md5", GetAttachmentMD5); | |
| 3855 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/size", GetAttachmentSize); | |
| 3856 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/uncompress", ChangeAttachmentCompression<CompressionType_None>); | |
|
4883
504624b0a062
Added "/patients|studies|series|instances/{...}/attachments/{...}/info" route to retrieve the full information about an attachment (size, type, MD5 and UUID)
Alain Mazy <am@osimis.io>
parents:
4880
diff
changeset
|
3857 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/info", GetAttachmentInfo); |
| 4409 | 3858 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/verify-md5", VerifyAttachment); |
| 3859 } | |
| 782 | 3860 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
3861 Register("/tools/invalidate-tags", InvalidateTags); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3862 Register("/tools/lookup", Lookup); |
| 1354 | 3863 Register("/tools/find", Find); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
3864 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3865 Register("/patients/{id}/studies", GetChildResources<ResourceType_Patient, ResourceType_Study>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3866 Register("/patients/{id}/series", GetChildResources<ResourceType_Patient, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3867 Register("/patients/{id}/instances", GetChildResources<ResourceType_Patient, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3868 Register("/studies/{id}/series", GetChildResources<ResourceType_Study, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3869 Register("/studies/{id}/instances", GetChildResources<ResourceType_Study, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3870 Register("/series/{id}/instances", GetChildResources<ResourceType_Series, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
3871 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3872 Register("/studies/{id}/patient", GetParentResource<ResourceType_Study, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3873 Register("/series/{id}/patient", GetParentResource<ResourceType_Series, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3874 Register("/series/{id}/study", GetParentResource<ResourceType_Series, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3875 Register("/instances/{id}/patient", GetParentResource<ResourceType_Instance, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3876 Register("/instances/{id}/study", GetParentResource<ResourceType_Instance, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3877 Register("/instances/{id}/series", GetParentResource<ResourceType_Instance, ResourceType_Series>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
3878 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3879 Register("/patients/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3880 Register("/studies/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3881 Register("/series/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
3882 |
| 782 | 3883 Register("/instances/{id}/content/*", GetRawContent); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3884 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
3885 Register("/series/{id}/ordered-slices", OrderSlices); |
|
4902
df86d2505df8
Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
3886 Register("/series/{id}/numpy", GetNumpySeries); // New in Orthanc 1.10.0 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3887 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3888 Register("/patients/{id}/reconstruct", ReconstructResource<ResourceType_Patient>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3889 Register("/studies/{id}/reconstruct", ReconstructResource<ResourceType_Study>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3890 Register("/series/{id}/reconstruct", ReconstructResource<ResourceType_Series>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
3891 Register("/instances/{id}/reconstruct", ReconstructResource<ResourceType_Instance>); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
3892 Register("/tools/reconstruct", ReconstructAllResources); |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3893 |
|
4698
d16c3c7f11ef
new route "/tools/bulk-content" to get the content of a set of resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4697
diff
changeset
|
3894 Register("/tools/bulk-content", BulkContent); |
|
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4661
diff
changeset
|
3895 Register("/tools/bulk-delete", BulkDelete); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3896 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3897 } |