Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.cpp @ 4516:671ee7c1fd46
added DicomToJsonFlags_SkipGroupLengths
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 16 Feb 2021 15:01:13 +0100 |
parents | 8734caa12448 |
children | 31f940334496 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
136 | 11 * |
0 | 12 * This program is distributed in the hope that it will be useful, but |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
0 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
0 | 20 **/ |
21 | |
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22 |
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23 #include "../PrecompiledHeaders.h" |
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24 |
71 | 25 #ifndef NOMINMAX |
26 #define NOMINMAX | |
27 #endif | |
0 | 28 |
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29 #if !defined(ORTHANC_SANDBOXED) |
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30 # error The macro ORTHANC_SANDBOXED must be defined |
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31 #endif |
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32 |
3117 | 33 #if !defined(DCMTK_VERSION_NUMBER) |
34 # error The macro DCMTK_VERSION_NUMBER must be defined | |
35 #endif | |
36 | |
0 | 37 #include "FromDcmtkBridge.h" |
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38 #include "ToDcmtkBridge.h" |
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39 #include "../Compatibility.h" |
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40 #include "../Logging.h" |
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41 #include "../Toolbox.h" |
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42 #include "../OrthancException.h" |
0 | 43 |
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44 #if ORTHANC_SANDBOXED == 0 |
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45 # include "../TemporaryFile.h" |
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46 #endif |
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47 |
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48 #include <list> |
71 | 49 #include <limits> |
50 | |
0 | 51 #include <boost/lexical_cast.hpp> |
1656 | 52 #include <boost/filesystem.hpp> |
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53 #include <boost/algorithm/string/predicate.hpp> |
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54 #include <boost/algorithm/string/join.hpp> |
0 | 55 |
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56 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 57 #include <dcmtk/dcmdata/dcdicent.h> |
58 #include <dcmtk/dcmdata/dcdict.h> | |
59 #include <dcmtk/dcmdata/dcfilefo.h> | |
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60 #include <dcmtk/dcmdata/dcistrmb.h> |
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61 #include <dcmtk/dcmdata/dcostrmb.h> |
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62 #include <dcmtk/dcmdata/dcpixel.h> |
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63 #include <dcmtk/dcmdata/dcuid.h> |
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64 #include <dcmtk/dcmdata/dcxfer.h> |
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65 |
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66 #include <dcmtk/dcmdata/dcvrae.h> |
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67 #include <dcmtk/dcmdata/dcvras.h> |
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68 #include <dcmtk/dcmdata/dcvrat.h> |
302
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69 #include <dcmtk/dcmdata/dcvrcs.h> |
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70 #include <dcmtk/dcmdata/dcvrda.h> |
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71 #include <dcmtk/dcmdata/dcvrds.h> |
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72 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 73 #include <dcmtk/dcmdata/dcvrfd.h> |
74 #include <dcmtk/dcmdata/dcvrfl.h> | |
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75 #include <dcmtk/dcmdata/dcvris.h> |
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76 #include <dcmtk/dcmdata/dcvrlo.h> |
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77 #include <dcmtk/dcmdata/dcvrlt.h> |
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78 #include <dcmtk/dcmdata/dcvrpn.h> |
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79 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 80 #include <dcmtk/dcmdata/dcvrsl.h> |
81 #include <dcmtk/dcmdata/dcvrss.h> | |
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82 #include <dcmtk/dcmdata/dcvrst.h> |
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83 #include <dcmtk/dcmdata/dcvrtm.h> |
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84 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 85 #include <dcmtk/dcmdata/dcvrul.h> |
86 #include <dcmtk/dcmdata/dcvrus.h> | |
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87 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 88 |
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89 #if DCMTK_VERSION_NUMBER >= 361 |
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90 # include <dcmtk/dcmdata/dcvruc.h> |
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91 # include <dcmtk/dcmdata/dcvrur.h> |
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92 #endif |
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93 |
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94 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
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95 # include <OrthancFrameworkResources.h> |
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96 #endif |
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97 |
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98 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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99 # include <dcmtk/dcmjpeg/djdecode.h> |
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100 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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101 # include <dcmtk/dcmjpeg/djencode.h> |
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102 # endif |
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103 #endif |
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104 |
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105 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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106 # include <dcmtk/dcmjpls/djdecode.h> |
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107 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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108 # include <dcmtk/dcmjpls/djencode.h> |
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109 # endif |
1930 | 110 #endif |
111 | |
112 | |
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113 #include <dcmtk/dcmdata/dcrledrg.h> |
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114 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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115 # include <dcmtk/dcmdata/dcrleerg.h> |
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116 # include <dcmtk/dcmimage/diregist.h> // include to support color images |
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117 #endif |
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118 |
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119 |
62 | 120 namespace Orthanc |
0 | 121 { |
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122 static bool IsBinaryTag(const DcmTag& key) |
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123 { |
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124 return (key.isUnknownVR() || |
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125 key.getEVR() == EVR_OB || |
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126 key.getEVR() == EVR_OW || |
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127 key.getEVR() == EVR_UN || |
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128 key.getEVR() == EVR_ox); |
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129 } |
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130 |
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131 |
1656 | 132 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
133 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
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134 FrameworkResources::FileResourceId resource) |
1656 | 135 { |
2017 | 136 std::string content; |
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137 FrameworkResources::GetFileResource(content, resource); |
1656 | 138 |
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139 #if ORTHANC_SANDBOXED == 0 |
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140 TemporaryFile tmp; |
2017 | 141 tmp.Write(content); |
1656 | 142 |
143 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
144 { | |
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145 throw OrthancException(ErrorCode_InternalError, |
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146 "Cannot read embedded dictionary. Under Windows, make sure that " |
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147 "your TEMP directory does not contain special characters."); |
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149 #else |
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150 if (!dictionary.loadFromMemory(content)) |
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151 { |
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152 throw OrthancException(ErrorCode_InternalError, |
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153 "Cannot read embedded dictionary. Under Windows, make sure that " |
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154 "your TEMP directory does not contain special characters."); |
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155 } |
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156 #endif |
1656 | 157 } |
158 #endif | |
159 | |
160 | |
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161 namespace |
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162 { |
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163 class DictionaryLocker : public boost::noncopyable |
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164 { |
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165 private: |
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166 DcmDataDictionary& dictionary_; |
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167 |
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168 public: |
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169 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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170 { |
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171 } |
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172 |
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173 ~DictionaryLocker() |
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174 { |
3117 | 175 #if DCMTK_VERSION_NUMBER >= 364 |
176 dcmDataDict.wrunlock(); | |
177 #else | |
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178 dcmDataDict.unlock(); |
3117 | 179 #endif |
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180 } |
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181 |
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182 DcmDataDictionary& operator*() |
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183 { |
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184 return dictionary_; |
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185 } |
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186 |
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187 DcmDataDictionary* operator->() |
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188 { |
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189 return &dictionary_; |
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190 } |
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191 }; |
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192 |
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193 |
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194 ORTHANC_FORCE_INLINE |
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195 static std::string FloatToString(float v) |
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196 { |
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197 /** |
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198 * From "boost::lexical_cast" documentation: "For more involved |
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199 * conversions, such as where precision or formatting need tighter |
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200 * control than is offered by the default behavior of |
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201 * lexical_cast, the conventional stringstream approach is |
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202 * recommended." |
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203 * https://www.boost.org/doc/libs/1_65_0/doc/html/boost_lexical_cast.html |
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204 * http://www.gotw.ca/publications/mill19.htm |
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205 * |
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206 * The precision of 17 corresponds to "defaultRealPrecision" in JsonCpp: |
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207 * https://github.com/open-source-parsers/jsoncpp/blob/master/include/json/value.h |
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208 **/ |
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209 |
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210 //return boost::lexical_cast<std::string>(v); // This was used in Orthanc <= 1.9.0 |
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211 |
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212 std::ostringstream ss; |
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213 ss << std::setprecision(17) << v; |
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214 return ss.str(); |
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215 } |
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216 |
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217 |
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218 ORTHANC_FORCE_INLINE |
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219 static std::string DoubleToString(double v) |
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220 { |
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221 //return boost::lexical_cast<std::string>(v); // This was used in Orthanc <= 1.9.0 |
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222 |
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223 std::ostringstream ss; |
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224 ss << std::setprecision(17) << v; |
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225 return ss.str(); |
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226 } |
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227 |
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228 |
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229 #define DCMTK_TO_CTYPE_CONVERTER(converter, cType, dcmtkType, getter, toStringFunction) \ |
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230 \ |
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231 struct converter \ |
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232 { \ |
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233 typedef cType CType; \ |
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234 \ |
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235 ORTHANC_FORCE_INLINE \ |
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236 static bool Apply(CType& result, \ |
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237 DcmElement& element, \ |
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238 size_t i) \ |
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239 { \ |
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240 return dynamic_cast<dcmtkType&>(element).getter(result, i).good(); \ |
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241 } \ |
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242 \ |
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243 ORTHANC_FORCE_INLINE \ |
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244 static std::string ToString(CType value) \ |
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245 { \ |
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246 return toStringFunction(value); \ |
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247 } \ |
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248 }; |
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249 |
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250 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint32Converter, Sint32, DcmSignedLong, getSint32, boost::lexical_cast<std::string>) |
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251 DCMTK_TO_CTYPE_CONVERTER(DcmtkToSint16Converter, Sint16, DcmSignedShort, getSint16, boost::lexical_cast<std::string>) |
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252 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint32Converter, Uint32, DcmUnsignedLong, getUint32, boost::lexical_cast<std::string>) |
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253 DCMTK_TO_CTYPE_CONVERTER(DcmtkToUint16Converter, Uint16, DcmUnsignedShort, getUint16, boost::lexical_cast<std::string>) |
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254 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat32Converter, Float32, DcmFloatingPointSingle, getFloat32, FloatToString) |
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255 DCMTK_TO_CTYPE_CONVERTER(DcmtkToFloat64Converter, Float64, DcmFloatingPointDouble, getFloat64, DoubleToString) |
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256 |
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257 |
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258 template <typename F> |
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259 static DicomValue* ApplyDcmtkToCTypeConverter(DcmElement& element) |
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260 { |
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261 F f; |
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262 typename F::CType value; |
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263 |
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264 if (element.getLength() > sizeof(typename F::CType) |
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265 && (element.getLength() % sizeof(typename F::CType)) == 0) |
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266 { |
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267 size_t count = element.getLength() / sizeof(typename F::CType); |
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268 std::vector<std::string> strings; |
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269 for (size_t i = 0; i < count; i++) { |
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270 if (f.Apply(value, element, i)) { |
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271 strings.push_back(F::ToString(value)); |
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272 } |
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273 } |
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274 return new DicomValue(boost::algorithm::join(strings, "\\"), false); |
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275 } |
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276 else if (f.Apply(value, element, 0)) { |
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277 return new DicomValue(F::ToString(value), false); |
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278 } |
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279 else { |
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280 return new DicomValue; |
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281 } |
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282 } |
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283 } |
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284 |
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285 |
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286 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
1656 | 287 { |
2296 | 288 LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER; |
289 | |
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290 { |
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291 DictionaryLocker locker; |
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292 |
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293 locker->clear(); |
1656 | 294 |
295 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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296 LOG(INFO) << "Loading the embedded dictionaries"; |
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297 /** |
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298 * Do not load DICONDE dictionary, it breaks the other tags. The |
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299 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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300 * dictionary is not loaded by storescu. |
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301 **/ |
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302 //LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICONDE); |
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303 |
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304 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_DICOM); |
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305 |
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306 if (loadPrivateDictionary) |
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307 { |
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308 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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309 LoadEmbeddedDictionary(*locker, FrameworkResources::DICTIONARY_PRIVATE); |
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310 } |
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311 else |
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312 { |
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313 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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314 } |
1656 | 315 |
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316 #else |
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317 std::vector<std::string> dictionaries; |
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318 |
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319 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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320 if (env != NULL) |
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321 { |
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322 // This mimics the behavior of DCMTK: |
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323 // https://support.dcmtk.org/docs/file_envvars.html |
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324 #if defined(_WIN32) |
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325 Toolbox::TokenizeString(dictionaries, std::string(env), ';'); |
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326 #else |
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327 Toolbox::TokenizeString(dictionaries, std::string(env), ':'); |
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328 #endif |
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329 } |
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330 else |
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331 { |
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332 boost::filesystem::path base = DCMTK_DICTIONARY_DIR; |
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333 dictionaries.push_back((base / "dicom.dic").string()); |
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334 dictionaries.push_back((base / "private.dic").string()); |
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335 } |
1656 | 336 |
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337 for (size_t i = 0; i < dictionaries.size(); i++) |
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338 { |
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339 LOG(WARNING) << "Loading external DICOM dictionary: \"" << dictionaries[i] << "\""; |
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340 |
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341 if (!locker->loadDictionary(dictionaries[i].c_str())) |
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342 { |
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343 throw OrthancException(ErrorCode_InexistentFile); |
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344 } |
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345 } |
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346 |
1656 | 347 #endif |
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348 } |
1656 | 349 |
350 /* make sure data dictionary is loaded */ | |
351 if (!dcmDataDict.isDictionaryLoaded()) | |
352 { | |
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353 throw OrthancException(ErrorCode_InternalError, |
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354 "No DICOM dictionary loaded, check environment variable: " + |
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355 std::string(DCM_DICT_ENVIRONMENT_VARIABLE)); |
1656 | 356 } |
357 | |
358 { | |
359 // Test the dictionary with a simple DICOM tag | |
360 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
361 if (key.getEVR() != EVR_DS) | |
362 { | |
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363 throw OrthancException(ErrorCode_InternalError, |
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364 "The DICOM dictionary has not been correctly read"); |
1656 | 365 } |
366 } | |
367 } | |
368 | |
369 | |
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370 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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371 ValueRepresentation vr, |
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372 const std::string& name, |
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373 unsigned int minMultiplicity, |
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374 unsigned int maxMultiplicity, |
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375 const std::string& privateCreator) |
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376 { |
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377 if (minMultiplicity < 1) |
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378 { |
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379 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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380 } |
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381 |
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382 bool arbitrary = false; |
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383 if (maxMultiplicity == 0) |
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384 { |
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385 maxMultiplicity = DcmVariableVM; |
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386 arbitrary = true; |
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387 } |
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388 else if (maxMultiplicity < minMultiplicity) |
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389 { |
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390 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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391 } |
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392 |
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393 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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394 |
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395 LOG(INFO) << "Registering tag in dictionary: (" << tag.Format() << ") " |
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396 << (DcmVR(evr).getValidVRName()) << " " |
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397 << name << " (multiplicity: " << minMultiplicity << "-" |
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398 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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399 |
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400 std::unique_ptr<DcmDictEntry> entry; |
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401 if (privateCreator.empty()) |
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402 { |
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403 if (tag.GetGroup() % 2 == 1) |
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404 { |
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405 char buf[128]; |
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406 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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407 "but no private creator was associated with it", |
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408 tag.GetGroup(), tag.GetElement()); |
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409 LOG(WARNING) << buf; |
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410 } |
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411 |
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412 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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413 tag.GetElement(), |
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414 evr, name.c_str(), |
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415 static_cast<int>(minMultiplicity), |
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416 static_cast<int>(maxMultiplicity), |
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417 NULL /* version */, |
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418 OFTrue /* doCopyString */, |
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419 NULL /* private creator */)); |
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420 } |
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421 else |
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422 { |
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423 // "Private Data Elements have an odd Group Number that is not |
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424 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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425 // (FFFF,eeee)." |
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426 if (tag.GetGroup() % 2 == 0 /* even */ || |
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427 tag.GetGroup() == 0x0001 || |
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428 tag.GetGroup() == 0x0003 || |
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429 tag.GetGroup() == 0x0005 || |
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430 tag.GetGroup() == 0x0007 || |
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431 tag.GetGroup() == 0xffff) |
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432 { |
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433 char buf[128]; |
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434 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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435 tag.GetGroup(), tag.GetElement()); |
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436 throw OrthancException(ErrorCode_ParameterOutOfRange, std::string(buf)); |
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437 } |
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438 |
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439 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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440 tag.GetElement(), |
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441 evr, name.c_str(), |
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442 static_cast<int>(minMultiplicity), |
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443 static_cast<int>(maxMultiplicity), |
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444 "private" /* version */, |
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445 OFTrue /* doCopyString */, |
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446 privateCreator.c_str())); |
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447 } |
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448 |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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449 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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450 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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451 |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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452 { |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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453 DictionaryLocker locker; |
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454 |
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455 if (locker->findEntry(name.c_str())) |
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456 { |
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457 throw OrthancException(ErrorCode_AlreadyExistingTag, |
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458 "Cannot register two tags with the same symbolic name \"" + name + "\""); |
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459 } |
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460 |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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461 locker->addEntry(entry.release()); |
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462 } |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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463 } |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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464 |
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New function "OrthancPluginRegisterDictionaryTag()" to declare DICOM tags
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465 |
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466 Encoding FromDcmtkBridge::DetectEncoding(bool& hasCodeExtensions, |
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467 DcmItem& dataset, |
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Configuration::GetDefaultEncoding
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|
468 Encoding defaultEncoding) |
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primitives for proper encoding handling
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469 { |
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470 // http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2 |
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471 |
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472 OFString tmp; |
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473 if (dataset.findAndGetOFStringArray(DCM_SpecificCharacterSet, tmp).good()) |
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474 { |
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475 std::vector<std::string> tokens; |
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476 Toolbox::TokenizeString(tokens, std::string(tmp.c_str()), '\\'); |
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|
477 |
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478 hasCodeExtensions = (tokens.size() > 1); |
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479 |
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480 for (size_t i = 0; i < tokens.size(); i++) |
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481 { |
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482 std::string characterSet = Toolbox::StripSpaces(tokens[i]); |
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483 |
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484 if (!characterSet.empty()) |
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485 { |
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486 Encoding encoding; |
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487 |
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488 if (GetDicomEncoding(encoding, characterSet.c_str())) |
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489 { |
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490 // The specific character set is supported by the Orthanc core |
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491 return encoding; |
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492 } |
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493 else |
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494 { |
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495 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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496 << ", fallback to ASCII (remove all special characters)"; |
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497 return Encoding_Ascii; |
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498 } |
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499 } |
957
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500 } |
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501 } |
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502 else |
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503 { |
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504 hasCodeExtensions = false; |
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505 } |
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506 |
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507 // No specific character set tag: Use the default encoding |
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508 return defaultEncoding; |
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509 } |
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510 |
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511 |
4297 | 512 Encoding FromDcmtkBridge::DetectEncoding(DcmItem &dataset, |
513 Encoding defaultEncoding) | |
514 { | |
515 bool hasCodeExtensions; // ignored | |
516 return DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); | |
517 } | |
518 | |
519 | |
520 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, | |
2125 | 521 DcmItem& dataset, |
522 unsigned int maxStringLength, | |
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523 const std::set<DicomTag>& ignoreTagLength) |
0 | 524 { |
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525 const Encoding defaultEncoding = GetDefaultDicomEncoding(); |
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526 |
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527 bool hasCodeExtensions; |
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528 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
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529 |
0 | 530 target.Clear(); |
531 for (unsigned long i = 0; i < dataset.card(); i++) | |
532 { | |
533 DcmElement* element = dataset.getElement(i); | |
534 if (element && element->isLeaf()) | |
535 { | |
3651
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536 target.SetValueInternal(element->getTag().getGTag(), |
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537 element->getTag().getETag(), |
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538 ConvertLeafElement(*element, DicomToJsonFlags_Default, |
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539 maxStringLength, encoding, hasCodeExtensions, ignoreTagLength)); |
0 | 540 } |
541 } | |
542 } | |
543 | |
544 | |
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diff
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545 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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546 { |
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diff
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547 return DicomTag(tag.getGTag(), tag.getETag()); |
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548 } |
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549 |
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diff
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550 |
0 | 551 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
552 { | |
553 return DicomTag(element.getGTag(), element.getETag()); | |
554 } | |
555 | |
556 | |
956
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diff
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557 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
1736
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diff
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558 DicomToJsonFlags flags, |
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559 unsigned int maxStringLength, |
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560 Encoding encoding, |
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561 bool hasCodeExtensions, |
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562 const std::set<DicomTag>& ignoreTagLength) |
0 | 563 { |
564 if (!element.isLeaf()) | |
565 { | |
1582
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diff
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566 // This function is only applicable to leaf elements |
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567 throw OrthancException(ErrorCode_BadParameterType); |
0 | 568 } |
569 | |
1818
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570 char *c = NULL; |
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571 if (element.isaString() && |
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572 element.getString(c).good()) |
0 | 573 { |
1818
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574 if (c == NULL) // This case corresponds to the empty string |
0 | 575 { |
1818
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576 return new DicomValue("", false); |
0 | 577 } |
578 else | |
579 { | |
1818
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diff
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|
580 std::string s(c); |
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|
581 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
1854
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|
582 |
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|
583 if (maxStringLength != 0 && |
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diff
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|
584 utf8.size() > maxStringLength && |
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diff
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585 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
1854
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diff
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|
586 { |
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diff
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|
587 return new DicomValue; // Too long, create a NULL value |
1854
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|
588 } |
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diff
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|
589 else |
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diff
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|
590 { |
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diff
changeset
|
591 return new DicomValue(utf8, false); |
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|
592 } |
0 | 593 } |
594 } | |
595 | |
2129
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diff
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|
596 |
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diff
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597 if (element.getVR() == EVR_UN) |
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|
598 { |
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diff
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599 // Unknown value representation: Lookup in the dictionary. This |
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diff
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600 // is notably the case for private tags registered with the |
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|
601 // "Dictionary" configuration option. |
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|
602 DictionaryLocker locker; |
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|
603 |
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|
604 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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|
605 element.getTag().getPrivateCreator()); |
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|
606 if (entry != NULL && |
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|
607 entry->getVR().isaString()) |
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|
608 { |
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|
609 Uint8* data = NULL; |
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|
610 |
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|
611 // At (*), we do not try and convert to UTF-8, as nothing says |
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|
612 // the encoding of the private tag is the same as that of the |
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|
613 // remaining of the DICOM dataset. Only go for ASCII strings. |
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|
614 |
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|
615 if (element.getUint8Array(data) == EC_Normal && |
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|
616 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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|
617 { |
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618 if (data == NULL) |
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619 { |
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620 return new DicomValue("", false); // Empty string |
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621 } |
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|
622 else if (maxStringLength != 0 && |
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|
623 element.getLength() > maxStringLength && |
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|
624 ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
2129
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625 { |
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626 return new DicomValue; // Too long, create a NULL value |
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627 } |
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628 else |
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|
629 { |
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|
630 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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631 return new DicomValue(s, false); |
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632 } |
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633 } |
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634 } |
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635 } |
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636 |
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637 |
0 | 638 try |
639 { | |
640 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
641 switch (element.getVR()) | |
642 { | |
643 | |
644 /** | |
1738
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645 * Deal with binary data (including PixelData). |
0 | 646 **/ |
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647 |
302
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648 case EVR_OB: // other byte |
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649 case EVR_OF: // other float |
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650 case EVR_OW: // other word |
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651 case EVR_UN: // unknown value representation |
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652 case EVR_ox: // OB or OW depending on context |
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653 case EVR_DS: // decimal string |
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654 case EVR_IS: // integer string |
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655 case EVR_AS: // age string |
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656 case EVR_DA: // date string |
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657 case EVR_DT: // date time string |
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658 case EVR_TM: // time string |
302
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659 case EVR_AE: // application entity title |
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660 case EVR_CS: // code string |
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661 case EVR_SH: // short string |
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662 case EVR_LO: // long string |
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663 case EVR_ST: // short text |
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664 case EVR_LT: // long text |
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665 case EVR_UT: // unlimited text |
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666 case EVR_PN: // person name |
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667 case EVR_UI: // unique identifier |
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668 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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669 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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ParsedDicomFile::CreateFromJson
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670 { |
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671 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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672 { |
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673 Uint8* data = NULL; |
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674 if (element.getUint8Array(data) == EC_Normal) |
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675 { |
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676 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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677 } |
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678 } |
0 | 679 |
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680 return new DicomValue; |
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681 } |
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682 |
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683 /** |
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684 * Numeric types |
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685 **/ |
0 | 686 |
302
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687 case EVR_SL: // signed long |
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688 { |
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689 return ApplyDcmtkToCTypeConverter<DcmtkToSint32Converter>(element); |
302
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690 } |
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691 |
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692 case EVR_SS: // signed short |
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693 { |
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694 return ApplyDcmtkToCTypeConverter<DcmtkToSint16Converter>(element); |
302
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695 } |
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696 |
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697 case EVR_UL: // unsigned long |
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698 { |
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699 return ApplyDcmtkToCTypeConverter<DcmtkToUint32Converter>(element); |
302
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700 } |
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701 |
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702 case EVR_US: // unsigned short |
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703 { |
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704 return ApplyDcmtkToCTypeConverter<DcmtkToUint16Converter>(element); |
302
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705 } |
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|
706 |
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707 case EVR_FL: // float single-precision |
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|
708 { |
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|
709 return ApplyDcmtkToCTypeConverter<DcmtkToFloat32Converter>(element); |
302
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|
710 } |
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|
711 |
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712 case EVR_FD: // float double-precision |
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713 { |
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|
714 return ApplyDcmtkToCTypeConverter<DcmtkToFloat64Converter>(element); |
1131 | 715 } |
716 | |
717 | |
718 /** | |
719 * Attribute tag. | |
720 **/ | |
721 | |
722 case EVR_AT: | |
723 { | |
1147 | 724 DcmTagKey tag; |
725 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
726 { | |
727 DicomTag t(tag.getGroup(), tag.getElement()); | |
1737
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|
728 return new DicomValue(t.Format(), false); |
1147 | 729 } |
1131 | 730 else |
1147 | 731 { |
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|
732 return new DicomValue; |
1147 | 733 } |
302
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734 } |
0 | 735 |
736 | |
737 /** | |
302
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738 * Sequence types, should never occur at this point because of |
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|
739 * "element.isLeaf()". |
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740 **/ |
0 | 741 |
302
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742 case EVR_SQ: // sequence of items |
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743 return new DicomValue; |
0 | 744 |
745 | |
302
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|
746 /** |
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747 * Internal to DCMTK. |
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748 **/ |
0 | 749 |
302
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750 case EVR_xs: // SS or US depending on context |
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751 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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752 case EVR_na: // na="not applicable", for data which has no VR |
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753 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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754 case EVR_item: // used internally for items |
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755 case EVR_metainfo: // used internally for meta info datasets |
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756 case EVR_dataset: // used internally for datasets |
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757 case EVR_fileFormat: // used internally for DICOM files |
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758 case EVR_dicomDir: // used internally for DICOMDIR objects |
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759 case EVR_dirRecord: // used internally for DICOMDIR records |
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760 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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761 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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762 case EVR_PixelData: // used internally for uncompressed pixeld data |
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763 case EVR_OverlayData: // used internally for overlay data |
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|
764 return new DicomValue; |
0 | 765 |
766 | |
302
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|
767 /** |
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|
768 * Default case. |
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769 **/ |
0 | 770 |
302
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771 default: |
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|
772 return new DicomValue; |
0 | 773 } |
774 } | |
2499
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|
775 catch (boost::bad_lexical_cast&) |
0 | 776 { |
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|
777 return new DicomValue; |
0 | 778 } |
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|
779 catch (std::bad_cast&) |
306
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780 { |
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|
781 return new DicomValue; |
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782 } |
0 | 783 } |
784 | |
785 | |
1687 | 786 static Json::Value& PrepareNode(Json::Value& parent, |
787 DcmElement& element, | |
788 DicomToJsonFormat format) | |
0 | 789 { |
1687 | 790 assert(parent.type() == Json::objectValue); |
0 | 791 |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
792 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
305
86bb79522f19
name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
793 const std::string formattedTag = tag.Format(); |
86bb79522f19
name of the private tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
794 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
795 if (format == DicomToJsonFormat_Short) |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
796 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
797 parent[formattedTag] = Json::nullValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
798 return parent[formattedTag]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
799 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
800 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
801 // This code gives access to the name of the private tags |
2115
a657f7772e69
Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2076
diff
changeset
|
802 std::string tagName = FromDcmtkBridge::GetTagName(element); |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
803 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
804 switch (format) |
0 | 805 { |
1860
c7d70f659190
DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1854
diff
changeset
|
806 case DicomToJsonFormat_Human: |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
807 parent[tagName] = Json::nullValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
808 return parent[tagName]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
809 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
810 case DicomToJsonFormat_Full: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
811 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
812 parent[formattedTag] = Json::objectValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
813 Json::Value& node = parent[formattedTag]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
814 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
815 if (element.isLeaf()) |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
816 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
817 node["Name"] = tagName; |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
818 |
2076 | 819 if (element.getTag().getPrivateCreator() != NULL) |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
820 { |
2076 | 821 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
822 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
823 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
824 return node; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
825 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
826 else |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
827 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
828 node["Name"] = tagName; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
829 node["Type"] = "Sequence"; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
830 node["Value"] = Json::nullValue; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
831 return node["Value"]; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
832 } |
306
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
833 } |
326d5a4a5af3
modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
305
diff
changeset
|
834 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
835 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
836 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 837 } |
838 } | |
839 | |
840 | |
841 static void LeafValueToJson(Json::Value& target, | |
842 const DicomValue& value, | |
843 DicomToJsonFormat format, | |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
844 DicomToJsonFlags flags, |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
845 unsigned int maxStringLength) |
1687 | 846 { |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
847 Json::Value* targetValue = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
848 Json::Value* targetType = NULL; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
849 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
850 switch (format) |
1687 | 851 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
852 case DicomToJsonFormat_Short: |
1860
c7d70f659190
DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1854
diff
changeset
|
853 case DicomToJsonFormat_Human: |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
854 { |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
855 assert(target.type() == Json::nullValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
856 targetValue = ⌖ |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
857 break; |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
858 } |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
859 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
860 case DicomToJsonFormat_Full: |
0 | 861 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
862 assert(target.type() == Json::objectValue); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
863 target["Value"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
864 target["Type"] = Json::nullValue; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
865 targetType = &target["Type"]; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
866 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
867 break; |
0 | 868 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
869 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
870 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
871 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 872 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
873 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
874 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
875 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
876 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
877 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
878 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
879 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
880 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
881 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
882 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
883 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
884 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
885 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
886 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
887 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
888 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
889 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
890 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
891 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
892 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
893 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
894 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
895 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
896 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
897 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
898 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
899 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
900 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
901 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
902 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
903 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
904 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
905 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
906 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
907 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
908 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
909 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
910 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
911 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
912 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
913 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
914 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
915 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
916 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
917 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
918 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
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919 } |
1687 | 920 } |
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921 |
1687 | 922 |
2126 | 923 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
924 DcmElement& element, | |
925 DicomToJsonFormat format, | |
926 DicomToJsonFlags flags, | |
927 unsigned int maxStringLength, | |
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928 Encoding encoding, |
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929 bool hasCodeExtensions, |
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930 const std::set<DicomTag>& ignoreTagLength, |
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931 unsigned int depth) |
1687 | 932 { |
1691 | 933 if (parent.type() == Json::nullValue) |
934 { | |
935 parent = Json::objectValue; | |
936 } | |
937 | |
938 assert(parent.type() == Json::objectValue); | |
1687 | 939 Json::Value& target = PrepareNode(parent, element, format); |
940 | |
941 if (element.isLeaf()) | |
942 { | |
2129
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943 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
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944 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
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945 (element, flags, 0, encoding, hasCodeExtensions, ignoreTagLength)); |
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946 |
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947 if (ignoreTagLength.find(GetTag(element)) == ignoreTagLength.end()) |
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948 { |
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949 LeafValueToJson(target, *v, format, flags, maxStringLength); |
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950 } |
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951 else |
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952 { |
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953 LeafValueToJson(target, *v, format, flags, 0); |
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954 } |
0 | 955 } |
956 else | |
957 { | |
1688
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958 assert(target.type() == Json::nullValue); |
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959 target = Json::arrayValue; |
0 | 960 |
961 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
962 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 963 // etc. are not." The following dynamic_cast is thus OK. |
0 | 964 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
965 | |
966 for (unsigned long i = 0; i < sequence.card(); i++) | |
967 { | |
968 DcmItem* child = sequence.getItem(i); | |
1687 | 969 Json::Value& v = target.append(Json::objectValue); |
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970 DatasetToJson(v, *child, format, flags, maxStringLength, encoding, hasCodeExtensions, |
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971 ignoreTagLength, depth + 1); |
1687 | 972 } |
0 | 973 } |
974 } | |
975 | |
976 | |
2126 | 977 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
978 DcmItem& item, | |
979 DicomToJsonFormat format, | |
980 DicomToJsonFlags flags, | |
981 unsigned int maxStringLength, | |
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982 Encoding encoding, |
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983 bool hasCodeExtensions, |
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984 const std::set<DicomTag>& ignoreTagLength, |
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985 unsigned int depth) |
1686 | 986 { |
1688
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987 assert(parent.type() == Json::objectValue); |
1686 | 988 |
989 for (unsigned long i = 0; i < item.card(); i++) | |
990 { | |
991 DcmElement* element = item.getElement(i); | |
1735
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992 if (element == NULL) |
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993 { |
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994 throw OrthancException(ErrorCode_InternalError); |
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995 } |
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996 |
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ParsedDicomFile::CreateFromJson
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997 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
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998 |
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999 // New flag in Orthanc 1.9.1 |
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1000 if (depth == 0 && |
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1001 (flags & DicomToJsonFlags_StopAfterPixelData) && |
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1002 tag > DICOM_TAG_PIXEL_DATA) |
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1003 { |
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1004 continue; |
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1005 } |
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1006 |
4516
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1007 // New flag in Orthanc 1.9.1 |
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1008 if ((flags & DicomToJsonFlags_SkipGroupLengths) && |
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1009 tag.GetElement() == 0x0000) |
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1010 { |
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1011 continue; |
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1012 } |
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1013 |
1818
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1014 /*element->getTag().isPrivate()*/ |
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1015 if (tag.IsPrivate() && |
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1016 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
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1017 { |
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1018 continue; |
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1019 } |
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1020 |
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1021 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
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1022 { |
1736
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1023 DictionaryLocker locker; |
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1024 if (locker->findEntry(element->getTag(), element->getTag().getPrivateCreator()) == NULL) |
1736
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1025 { |
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1026 continue; |
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1027 } |
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1028 } |
1736
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1029 |
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1030 if (IsBinaryTag(element->getTag())) |
1739
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1031 { |
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1032 // This is a binary tag |
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1033 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
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1034 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
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1035 { |
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1036 continue; |
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1037 } |
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1038 } |
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1039 |
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1040 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding, |
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1041 hasCodeExtensions, ignoreTagLength, depth); |
1686 | 1042 } |
1043 } | |
1044 | |
1045 | |
2126 | 1046 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
1047 DcmDataset& dataset, | |
1048 DicomToJsonFormat format, | |
1049 DicomToJsonFlags flags, | |
2131 | 1050 unsigned int maxStringLength, |
2409
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1051 const std::set<DicomTag>& ignoreTagLength) |
0 | 1052 { |
4140
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1053 const Encoding defaultEncoding = GetDefaultDicomEncoding(); |
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1054 |
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1055 bool hasCodeExtensions; |
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1056 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
2126 | 1057 |
1688
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1058 target = Json::objectValue; |
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1059 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding, hasCodeExtensions, ignoreTagLength, 0); |
0 | 1060 } |
1061 | |
1062 | |
2126 | 1063 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
1064 DcmMetaInfo& dataset, | |
1065 DicomToJsonFormat format, | |
1066 DicomToJsonFlags flags, | |
1067 unsigned int maxStringLength) | |
1831
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1068 { |
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1069 std::set<DicomTag> ignoreTagLength; |
1831
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1070 target = Json::objectValue; |
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1071 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii, false, ignoreTagLength, 0); |
1831
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1072 } |
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1073 |
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1074 |
2115
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1075 |
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|
1076 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 1077 { |
291
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1078 { |
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1079 // Some patches for important tags because of different DICOM |
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1080 // dictionaries between DCMTK versions |
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1081 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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1082 std::string n = tmp.GetMainTagsName(); |
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1083 if (n.size() != 0) |
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1084 { |
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1085 return n; |
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1086 } |
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1087 // End of patches |
291
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1088 } |
106 | 1089 |
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1090 #if 0 |
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1091 // This version explicitly calls the dictionary |
0 | 1092 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1093 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
1094 | |
306
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1095 std::string s(DcmTag_ERROR_TagName); |
0 | 1096 if (entry != NULL) |
1097 { | |
1098 s = std::string(entry->getTagName()); | |
1099 } | |
1100 | |
1101 dcmDataDict.unlock(); | |
1102 return s; | |
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1103 #else |
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1104 const char* name = tag.getTagName(); |
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1105 if (name == NULL) |
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1106 { |
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1107 return DcmTag_ERROR_TagName; |
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1108 } |
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1109 else |
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1110 { |
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1111 return std::string(name); |
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1112 } |
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1113 #endif |
0 | 1114 } |
1115 | |
1116 | |
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1117 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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1118 const std::string& privateCreator) |
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1119 { |
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1120 DcmTag tag(t.GetGroup(), t.GetElement()); |
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1121 |
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1122 if (!privateCreator.empty()) |
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1123 { |
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1124 tag.setPrivateCreator(privateCreator.c_str()); |
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1125 } |
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1126 |
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1127 return GetTagNameInternal(tag); |
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1128 } |
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1129 |
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1130 |
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1131 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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1132 { |
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1133 // Copy the tag to ensure const-correctness of DcmElement. Note |
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1134 // that the private creator information is also copied. |
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1135 DcmTag tag(element.getTag()); |
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1136 |
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1137 return GetTagNameInternal(tag); |
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1138 } |
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1139 |
4297 | 1140 std::string FromDcmtkBridge::GetTagName(const DicomElement &element) |
1141 { | |
1142 return GetTagName(element.GetTag(), ""); | |
1143 } | |
1144 | |
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1145 |
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1146 |
304 | 1147 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 1148 { |
2662
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1149 DicomTag parsed(0, 0); |
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1150 if (DicomTag::ParseHexadecimal(parsed, name)) |
304 | 1151 { |
2662
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1152 return parsed; |
1861
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1153 } |
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1154 |
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1155 #if 0 |
0 | 1156 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1157 const DcmDictEntry* entry = dict.findEntry(name); | |
1158 | |
1159 if (entry == NULL) | |
1160 { | |
1161 dcmDataDict.unlock(); | |
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1162 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1163 } |
1164 else | |
1165 { | |
1166 DcmTagKey key = entry->getKey(); | |
1167 DicomTag tag(key.getGroup(), key.getElement()); | |
1168 dcmDataDict.unlock(); | |
1169 return tag; | |
1170 } | |
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1171 #else |
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1172 DcmTag tag; |
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1173 if (DcmTag::findTagFromName(name, tag).good()) |
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1174 { |
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1175 return DicomTag(tag.getGTag(), tag.getETag()); |
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1176 } |
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1177 else |
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1178 { |
2470 | 1179 LOG(INFO) << "Unknown DICOM tag: \"" << name << "\""; |
1582
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1180 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1181 } |
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1182 #endif |
0 | 1183 } |
1184 | |
4297 | 1185 DicomTag FromDcmtkBridge::ParseTag(const std::string &name) |
1186 { | |
1187 return ParseTag(name.c_str()); | |
1188 } | |
1189 | |
1190 bool FromDcmtkBridge::HasTag(const DicomMap &fields, const std::string &tagName) | |
1191 { | |
1192 return fields.HasTag(ParseTag(tagName)); | |
1193 } | |
1194 | |
1195 const DicomValue &FromDcmtkBridge::GetValue(const DicomMap &fields, | |
1196 const std::string &tagName) | |
1197 { | |
1198 return fields.GetValue(ParseTag(tagName)); | |
1199 } | |
1200 | |
1201 void FromDcmtkBridge::SetValue(DicomMap &target, | |
1202 const std::string &tagName, | |
1203 DicomValue *value) | |
1204 { | |
1205 const DicomTag tag = ParseTag(tagName); | |
1206 target.SetValueInternal(tag.GetGroup(), tag.GetElement(), value); | |
1207 } | |
1208 | |
0 | 1209 |
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1210 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1211 { |
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1212 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1213 return tmp.isUnknownVR(); |
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1214 } |
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1215 |
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1216 |
0 | 1217 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1218 const DicomMap& values, |
1219 bool simplify) | |
0 | 1220 { |
1221 if (result.type() != Json::objectValue) | |
1222 { | |
62 | 1223 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1224 } |
1225 | |
1226 result.clear(); | |
1227 | |
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1228 for (DicomMap::Content::const_iterator |
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1229 it = values.content_.begin(); it != values.content_.end(); ++it) |
0 | 1230 { |
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1231 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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1232 const std::string tagName = GetTagName(it->first, ""); |
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1233 |
1368 | 1234 if (simplify) |
1235 { | |
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1236 if (it->second->IsNull()) |
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1237 { |
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1238 result[tagName] = Json::nullValue; |
1737
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1239 } |
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1240 else |
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1241 { |
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1242 // TODO IsBinary |
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1243 result[tagName] = it->second->GetContent(); |
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1244 } |
1368 | 1245 } |
1246 else | |
1247 { | |
1248 Json::Value value = Json::objectValue; | |
1249 | |
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1250 value["Name"] = tagName; |
1368 | 1251 |
1252 if (it->second->IsNull()) | |
1253 { | |
1254 value["Type"] = "Null"; | |
1255 value["Value"] = Json::nullValue; | |
1256 } | |
1257 else | |
1258 { | |
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1259 // TODO IsBinary |
1368 | 1260 value["Type"] = "String"; |
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1261 value["Value"] = it->second->GetContent(); |
1368 | 1262 } |
1263 | |
1264 result[it->first.Format()] = value; | |
1265 } | |
0 | 1266 } |
1267 } | |
176 | 1268 |
1269 | |
788 | 1270 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1271 { |
1272 char uid[100]; | |
1273 | |
1274 switch (level) | |
1275 { | |
788 | 1276 case ResourceType_Patient: |
311 | 1277 // The "PatientID" field is of type LO (Long String), 64 |
1278 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1279 // as a random PatientID. | |
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1280 return Toolbox::GenerateUuid(); |
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1281 |
788 | 1282 case ResourceType_Instance: |
302
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1283 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1284 |
788 | 1285 case ResourceType_Series: |
302
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1286 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1287 |
788 | 1288 case ResourceType_Study: |
302
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1289 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1290 |
302
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|
1291 default: |
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|
1292 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1293 } |
1294 } | |
1295 | |
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1296 |
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|
1297 |
3748
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|
1298 static bool SaveToMemoryBufferInternal(std::string& buffer, |
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|
1299 DcmFileFormat& dicom, |
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|
1300 E_TransferSyntax xfer) |
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|
1301 { |
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|
1302 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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|
1303 |
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diff
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|
1304 // Create a memory buffer with the proper size |
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|
1305 { |
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|
1306 const uint32_t estimatedSize = dicom.calcElementLength(xfer, encodingType); // (*) |
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|
1307 buffer.resize(estimatedSize); |
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|
1308 } |
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|
1309 |
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|
1310 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
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|
1311 |
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|
1312 // Fill the memory buffer with the meta-header and the dataset |
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|
1313 dicom.transferInit(); |
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|
1314 OFCondition c = dicom.write(ob, xfer, encodingType, NULL, |
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|
1315 /*opt_groupLength*/ EGL_recalcGL, |
3765
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first transcoding to jpeg 8bpp
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|
1316 /*opt_paddingType*/ EPD_noChange, |
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|
1317 /*padlen*/ 0, /*subPadlen*/ 0, /*instanceLength*/ 0, |
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|
1318 EWM_updateMeta /* creates new SOP instance UID on lossy */); |
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diff
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|
1319 dicom.transferEnd(); |
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|
1320 |
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|
1321 if (c.good()) |
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|
1322 { |
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|
1323 // The DICOM file is successfully written, truncate the target |
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diff
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|
1324 // buffer if its size was overestimated by (*) |
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|
1325 ob.flush(); |
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|
1326 |
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|
1327 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
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diff
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|
1328 if (effectiveSize < buffer.size()) |
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|
1329 { |
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|
1330 buffer.resize(effectiveSize); |
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|
1331 } |
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|
1332 |
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|
1333 return true; |
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|
1334 } |
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|
1335 else |
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|
1336 { |
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|
1337 // Error |
ca36e3f1112c
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|
1338 buffer.clear(); |
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|
1339 return false; |
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|
1340 } |
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|
1341 } |
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changeset
|
1342 |
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diff
changeset
|
1343 |
291
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diff
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|
1344 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1345 DcmDataset& dataSet) |
291
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|
1346 { |
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|
1347 // Determine the transfer syntax which shall be used to write the |
3811
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3772
diff
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|
1348 // information to the file. If not possible, switch to the Little |
890af7156f19
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3772
diff
changeset
|
1349 // Endian syntax, with explicit length. |
291
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1350 |
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|
1351 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
661
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1352 |
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1353 |
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diff
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|
1354 /** |
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diff
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|
1355 * Note that up to Orthanc 0.7.1 (inclusive), the |
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|
1356 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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|
1357 * dataset into memory. We now keep the original transfer syntax |
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|
1358 * (if available). |
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|
1359 **/ |
3883
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DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
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3882
diff
changeset
|
1360 E_TransferSyntax xfer = dataSet.getCurrentXfer(); |
661
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|
1361 if (xfer == EXS_Unknown) |
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|
1362 { |
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|
1363 // No information about the original transfer syntax: This is |
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1364 // most probably a DICOM dataset that was read from memory. |
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|
1365 xfer = EXS_LittleEndianExplicit; |
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1366 } |
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1367 |
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|
1368 // Create the meta-header information |
1004
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|
1369 DcmFileFormat ff(&dataSet); |
661
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|
1370 ff.validateMetaInfo(xfer); |
1316
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changeset
|
1371 ff.removeInvalidGroups(); |
291
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1372 |
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|
1373 return SaveToMemoryBufferInternal(buffer, ff, xfer); |
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1374 } |
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|
1375 |
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|
1376 |
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|
1377 bool FromDcmtkBridge::Transcode(DcmFileFormat& dicom, |
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1378 DicomTransferSyntax syntax, |
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1379 const DcmRepresentationParameter* representation) |
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1380 { |
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|
1381 E_TransferSyntax xfer; |
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|
1382 if (!LookupDcmtkTransferSyntax(xfer, syntax)) |
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1383 { |
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|
1384 throw OrthancException(ErrorCode_InternalError); |
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1385 } |
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|
1386 else |
3885
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|
1387 { |
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changeset
|
1388 DicomTransferSyntax sourceSyntax; |
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|
1389 bool known = LookupOrthancTransferSyntax(sourceSyntax, dicom); |
3922
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changeset
|
1390 |
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changeset
|
1391 if (!dicom.chooseRepresentation(xfer, representation).good() || |
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|
1392 !dicom.canWriteXfer(xfer) || |
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changeset
|
1393 !dicom.validateMetaInfo(xfer, EWM_updateMeta).good()) |
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diff
changeset
|
1394 { |
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changeset
|
1395 return false; |
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|
1396 } |
3872
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|
1397 else |
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|
1398 { |
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changeset
|
1399 dicom.removeInvalidGroups(); |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1400 |
3885
e23026566536
removed unused functions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3883
diff
changeset
|
1401 if (known) |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1402 { |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1403 LOG(INFO) << "Transcoded an image from transfer syntax " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1404 << GetTransferSyntaxUid(sourceSyntax) << " to " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1405 << GetTransferSyntaxUid(syntax); |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1406 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1407 else |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1408 { |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1409 LOG(INFO) << "Transcoded an image from unknown transfer syntax to " |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1410 << GetTransferSyntaxUid(syntax); |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1411 } |
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
1412 |
3872
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1413 return true; |
b40dfa6dc8da
working on a simpler abstraction for transcoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3811
diff
changeset
|
1414 } |
291
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1415 } |
4d7469f72a0b
embedding of dicom dictionaries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
285
diff
changeset
|
1416 } |
1360 | 1417 |
1418 | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1419 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1420 { |
1421 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1422 return Convert(t.getEVR()); |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1423 } |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1424 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1425 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1426 { |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1427 switch (vr) |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1428 { |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1429 case EVR_AE: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1430 return ValueRepresentation_ApplicationEntity; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1431 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1432 case EVR_AS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1433 return ValueRepresentation_AgeString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1434 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1435 case EVR_AT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1436 return ValueRepresentation_AttributeTag; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1437 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1438 case EVR_CS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1439 return ValueRepresentation_CodeString; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1440 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1441 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1442 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1443 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1444 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1445 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1446 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1447 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1448 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1449 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1450 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1451 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1452 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1453 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1454 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1455 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1456 case EVR_IS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1457 return ValueRepresentation_IntegerString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1458 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1459 case EVR_LO: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1460 return ValueRepresentation_LongString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1461 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1462 case EVR_LT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1463 return ValueRepresentation_LongText; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1464 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1465 case EVR_OB: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1466 return ValueRepresentation_OtherByte; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1467 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1468 #if DCMTK_VERSION_NUMBER >= 361 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1469 case EVR_OD: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1470 return ValueRepresentation_OtherDouble; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1471 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1472 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1473 case EVR_OF: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1474 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1475 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1476 #if DCMTK_VERSION_NUMBER >= 362 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1477 case EVR_OL: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1478 return ValueRepresentation_OtherLong; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1479 #endif |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1480 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1481 case EVR_OW: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1482 return ValueRepresentation_OtherWord; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1483 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1484 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1485 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1486 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1487 case EVR_SH: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1488 return ValueRepresentation_ShortString; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1489 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1490 case EVR_SL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1491 return ValueRepresentation_SignedLong; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1492 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1493 case EVR_SQ: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1494 return ValueRepresentation_Sequence; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1495 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1496 case EVR_SS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1497 return ValueRepresentation_SignedShort; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1498 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1499 case EVR_ST: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1500 return ValueRepresentation_ShortText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1501 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1502 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1503 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1504 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1505 #if DCMTK_VERSION_NUMBER >= 361 |
3198
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parents:
3195
diff
changeset
|
1506 case EVR_UC: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1507 return ValueRepresentation_UnlimitedCharacters; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1508 #endif |
2006
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1509 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1510 case EVR_UI: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1511 return ValueRepresentation_UniqueIdentifier; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1512 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1513 case EVR_UL: |
6301bbcbcaed
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parents:
1998
diff
changeset
|
1514 return ValueRepresentation_UnsignedLong; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1515 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1516 case EVR_UN: |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1517 return ValueRepresentation_Unknown; |
6301bbcbcaed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1518 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
1519 #if DCMTK_VERSION_NUMBER >= 361 |
3198
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unit testing dicomweb conversion
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parents:
3195
diff
changeset
|
1520 case EVR_UR: |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
1521 return ValueRepresentation_UniversalResource; |
7724ed267b5c
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|
1522 #endif |
2006
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diff
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1523 |
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diff
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1524 case EVR_US: |
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diff
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|
1525 return ValueRepresentation_UnsignedShort; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1526 |
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diff
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1527 case EVR_UT: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1528 return ValueRepresentation_UnlimitedText; |
1792 | 1529 |
1417
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Sebastien Jodogne <s.jodogne@gmail.com>
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1530 default: |
2006
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1531 return ValueRepresentation_NotSupported; |
1417
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1532 } |
1360 | 1533 } |
1534 | |
1689 | 1535 |
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1536 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag, |
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|
1537 const std::string& privateCreator) |
1693
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1538 { |
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1539 if (tag.IsPrivate() && |
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|
1540 privateCreator.empty()) |
1693
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|
1541 { |
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|
1542 // This solves issue 140 (Modifying private tags with REST API |
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|
1543 // changes VR from LO to UN) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1544 // https://bugs.orthanc-server.com/show_bug.cgi?id=140 |
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|
1545 LOG(WARNING) << "Private creator should not be empty while creating a private tag: " << tag.Format(); |
1693
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|
1546 } |
1689 | 1547 |
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|
1548 #if DCMTK_VERSION_NUMBER >= 362 |
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|
1549 DcmTag key(tag.GetGroup(), tag.GetElement()); |
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|
1550 if (tag.IsPrivate()) |
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|
1551 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1552 return DcmItem::newDicomElement(key, privateCreator.c_str()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1553 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1554 else |
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|
1555 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1556 return DcmItem::newDicomElement(key, NULL); |
1689 | 1557 } |
3691
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1558 |
4922bdd046dd
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diff
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|
1559 #else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1560 DcmTag key(tag.GetGroup(), tag.GetElement()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1561 if (tag.IsPrivate()) |
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diff
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|
1562 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1563 // https://forum.dcmtk.org/viewtopic.php?t=4527 |
3708 | 1564 LOG(WARNING) << "You are using DCMTK <= 3.6.1: All the private tags " |
3691
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1565 "are considered as having a binary value representation"; |
4922bdd046dd
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1566 key.setPrivateCreator(privateCreator.c_str()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1567 return new DcmOtherByteOtherWord(key); |
4922bdd046dd
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|
1568 } |
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diff
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|
1569 else |
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|
1570 { |
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|
1571 return newDicomElement(key); |
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|
1572 } |
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|
1573 #endif |
1689 | 1574 } |
1575 | |
1576 | |
1577 | |
1578 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1695 | 1579 const std::string& utf8Value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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1792
diff
changeset
|
1580 bool decodeDataUriScheme, |
1695 | 1581 Encoding dicomEncoding) |
1689 | 1582 { |
1583 std::string binary; | |
1695 | 1584 const std::string* decoded = &utf8Value; |
1689 | 1585 |
1818
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ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1586 if (decodeDataUriScheme && |
2905
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Sebastien Jodogne <s.jodogne@gmail.com>
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2831
diff
changeset
|
1587 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY)) |
1689 | 1588 { |
1589 std::string mime; | |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1590 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1591 { |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1592 throw OrthancException(ErrorCode_BadFileFormat); |
4b545a8b1f95
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1593 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1594 |
1695 | 1595 decoded = &binary; |
1596 } | |
1597 else if (dicomEncoding != Encoding_Utf8) | |
1598 { | |
1599 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1600 decoded = &binary; |
1601 } | |
1602 | |
3691
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1603 if (IsBinaryTag(element.getTag())) |
1689 | 1604 { |
3199
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1605 bool ok; |
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|
1606 |
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|
1607 switch (element.getTag().getEVR()) |
3199
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|
1608 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1609 case EVR_OW: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1610 if (decoded->size() % sizeof(Uint16) != 0) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1611 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1612 LOG(ERROR) << "A tag with OW VR must have an even number of bytes"; |
9316f341e40f
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1613 ok = false; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1614 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1615 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1616 { |
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unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1617 ok = element.putUint16Array((const Uint16*) decoded->c_str(), decoded->size() / sizeof(Uint16)).good(); |
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unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1618 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1619 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1620 break; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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3198
diff
changeset
|
1621 |
9316f341e40f
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1622 default: |
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unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1623 ok = element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good(); |
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unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1624 break; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1625 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1626 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1627 if (ok) |
1689 | 1628 { |
1629 return; | |
1630 } | |
1631 else | |
1632 { | |
1633 throw OrthancException(ErrorCode_InternalError); | |
1634 } | |
1635 } | |
1636 | |
1637 bool ok = false; | |
1638 | |
1639 try | |
1640 { | |
3691
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1641 switch (element.getTag().getEVR()) |
1689 | 1642 { |
1643 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1644 | |
1645 /** | |
1646 * TODO. | |
1647 **/ | |
1648 | |
1649 case EVR_OB: // other byte | |
1650 case EVR_OW: // other word | |
1651 case EVR_AT: // attribute tag | |
1652 throw OrthancException(ErrorCode_NotImplemented); | |
1653 | |
1654 case EVR_UN: // unknown value representation | |
1655 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1656 | |
1657 | |
1658 /** | |
1659 * String types. | |
1660 **/ | |
1661 | |
1662 case EVR_DS: // decimal string | |
1663 case EVR_IS: // integer string | |
1664 case EVR_AS: // age string | |
1665 case EVR_DA: // date string | |
1666 case EVR_DT: // date time string | |
1667 case EVR_TM: // time string | |
1668 case EVR_AE: // application entity title | |
1669 case EVR_CS: // code string | |
1670 case EVR_SH: // short string | |
1671 case EVR_LO: // long string | |
1672 case EVR_ST: // short text | |
1673 case EVR_LT: // long text | |
1674 case EVR_UT: // unlimited text | |
1675 case EVR_PN: // person name | |
1676 case EVR_UI: // unique identifier | |
3209
f6374c36a671
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1677 #if DCMTK_VERSION_NUMBER >= 361 |
3199
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1678 case EVR_UC: // unlimited characters |
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|
1679 case EVR_UR: // URI/URL |
3209
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1680 #endif |
1689 | 1681 { |
1682 ok = element.putString(decoded->c_str()).good(); | |
1683 break; | |
1684 } | |
1685 | |
1686 | |
1687 /** | |
1688 * Numerical types | |
1689 **/ | |
1690 | |
1691 case EVR_SL: // signed long | |
1692 { | |
1693 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1694 break; | |
1695 } | |
1696 | |
1697 case EVR_SS: // signed short | |
1698 { | |
1699 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1700 break; | |
1701 } | |
1702 | |
1703 case EVR_UL: // unsigned long | |
3692
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1704 #if DCMTK_VERSION_NUMBER >= 362 |
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1705 case EVR_OL: // other long (requires byte-swapping) |
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|
1706 #endif |
1689 | 1707 { |
1708 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1709 break; | |
1710 } | |
1711 | |
1712 case EVR_US: // unsigned short | |
1713 { | |
1714 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1715 break; | |
1716 } | |
1717 | |
1718 case EVR_FL: // float single-precision | |
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|
1719 case EVR_OF: // other float (requires byte swapping) |
1689 | 1720 { |
1721 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1722 break; | |
1723 } | |
1724 | |
1725 case EVR_FD: // float double-precision | |
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1726 #if DCMTK_VERSION_NUMBER >= 361 |
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1727 case EVR_OD: // other double (requires byte-swapping) |
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1728 #endif |
1689 | 1729 { |
1730 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1731 break; | |
1732 } | |
1733 | |
1734 | |
1735 /** | |
1736 * Sequence types, should never occur at this point. | |
1737 **/ | |
1738 | |
1739 case EVR_SQ: // sequence of items | |
1740 { | |
1741 ok = false; | |
1742 break; | |
1743 } | |
1744 | |
1745 | |
1746 /** | |
1747 * Internal to DCMTK. | |
1748 **/ | |
1749 | |
1750 case EVR_ox: // OB or OW depending on context | |
1751 case EVR_xs: // SS or US depending on context | |
1752 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1753 case EVR_na: // na="not applicable", for data which has no VR | |
1754 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1755 case EVR_item: // used internally for items | |
1756 case EVR_metainfo: // used internally for meta info datasets | |
1757 case EVR_dataset: // used internally for datasets | |
1758 case EVR_fileFormat: // used internally for DICOM files | |
1759 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1760 case EVR_dirRecord: // used internally for DICOMDIR records | |
1761 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1762 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1763 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1764 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1765 case EVR_OverlayData: // used internally for overlay data | |
1766 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1767 default: | |
1768 break; | |
1769 } | |
1770 } | |
1771 catch (boost::bad_lexical_cast&) | |
1772 { | |
1773 ok = false; | |
1774 } | |
1775 | |
1776 if (!ok) | |
1777 { | |
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1778 DicomTag tag(element.getTag().getGroup(), element.getTag().getElement()); |
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1779 throw OrthancException(ErrorCode_BadFileFormat, |
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1780 "While creating a DICOM instance, tag (" + tag.Format() + |
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1781 ") has out-of-range value: \"" + (*decoded) + "\""); |
1689 | 1782 } |
1783 } | |
1784 | |
1785 | |
1693
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1786 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
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1787 const Json::Value& value, |
1818
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1788 bool decodeDataUriScheme, |
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1789 Encoding dicomEncoding, |
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1790 const std::string& privateCreator) |
1689 | 1791 { |
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1792 std::unique_ptr<DcmElement> element; |
1689 | 1793 |
1690 | 1794 switch (value.type()) |
1689 | 1795 { |
1690 | 1796 case Json::stringValue: |
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1797 element.reset(CreateElementForTag(tag, privateCreator)); |
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1798 FillElementWithString(*element, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1799 break; |
1800 | |
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1801 case Json::nullValue: |
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1802 element.reset(CreateElementForTag(tag, privateCreator)); |
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1803 FillElementWithString(*element, "", decodeDataUriScheme, dicomEncoding); |
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1804 break; |
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1805 |
1690 | 1806 case Json::arrayValue: |
1807 { | |
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1808 const char* p = NULL; |
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1809 if (tag.IsPrivate() && |
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1810 !privateCreator.empty()) |
4007
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1811 { |
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1812 p = privateCreator.c_str(); |
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1813 } |
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1814 |
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1815 DcmTag key(tag.GetGroup(), tag.GetElement(), p); |
1690 | 1816 if (key.getEVR() != EVR_SQ) |
1817 { | |
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1818 throw OrthancException(ErrorCode_BadParameterType, |
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|
1819 "Bad Parameter type for tag " + tag.Format()); |
1690 | 1820 } |
1821 | |
2287
9f3414878c02
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Sebastien Jodogne <s.jodogne@gmail.com>
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1822 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key); |
1690 | 1823 element.reset(sequence); |
1824 | |
1825 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1826 { | |
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1827 std::unique_ptr<DcmItem> item(new DcmItem); |
1690 | 1828 |
2830 | 1829 switch (value[i].type()) |
1690 | 1830 { |
2830 | 1831 case Json::objectValue: |
1832 { | |
1833 Json::Value::Members members = value[i].getMemberNames(); | |
1834 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1835 { | |
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1836 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding, privateCreator)); |
2830 | 1837 } |
2831 | 1838 break; |
2830 | 1839 } |
1840 | |
1841 case Json::arrayValue: | |
2831 | 1842 { |
2830 | 1843 // Lua cannot disambiguate between an empty dictionary |
1844 // and an empty array | |
1845 if (value[i].size() != 0) | |
1846 { | |
1847 throw OrthancException(ErrorCode_BadParameterType); | |
1848 } | |
1849 break; | |
2831 | 1850 } |
2830 | 1851 |
1852 default: | |
1853 throw OrthancException(ErrorCode_BadParameterType); | |
1690 | 1854 } |
1855 | |
1856 sequence->append(item.release()); | |
1857 } | |
1858 | |
1859 break; | |
1860 } | |
1861 | |
1862 default: | |
3895 | 1863 throw OrthancException(ErrorCode_BadParameterType, "Bad Parameter type for tag " + tag.Format()); |
1689 | 1864 } |
1865 | |
1866 return element.release(); | |
1867 } | |
1765
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1868 |
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1869 |
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1870 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
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1871 { |
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1872 DcmElement *element = NULL; |
1927
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1873 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
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1874 { |
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1875 throw OrthancException(ErrorCode_BadFileFormat); |
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1876 } |
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1877 |
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1878 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
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1879 |
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1880 E_TransferSyntax repType; |
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1881 const DcmRepresentationParameter *repParam = NULL; |
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1882 pixelData.getCurrentRepresentationKey(repType, repParam); |
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1883 |
1924
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1884 DcmPixelSequence* pixelSequence = NULL; |
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1885 if (!pixelData.getEncapsulatedRepresentation(repType, repParam, pixelSequence).good()) |
1924
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1886 { |
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1887 return NULL; |
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1888 } |
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1889 else |
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1890 { |
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1891 return pixelSequence; |
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1892 } |
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1893 } |
1934
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FromDcmtkBridge::FromJson
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1894 |
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1895 |
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1896 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
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1897 Encoding defaultEncoding) |
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1898 { |
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1899 if (json.type() != Json::objectValue) |
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FromDcmtkBridge::FromJson
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1900 { |
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1901 throw OrthancException(ErrorCode_BadParameterType); |
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1902 } |
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FromDcmtkBridge::FromJson
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1903 |
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1904 Encoding encoding = defaultEncoding; |
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FromDcmtkBridge::FromJson
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1905 |
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1906 const Json::Value::Members tags = json.getMemberNames(); |
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1907 |
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1908 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
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1909 for (size_t i = 0; i < tags.size(); i++) |
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1910 { |
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FromDcmtkBridge::FromJson
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1911 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
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1912 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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1913 { |
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1914 const Json::Value& value = json[tags[i]]; |
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1915 if (value.type() != Json::stringValue || |
2216
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1916 (value.asString().length() != 0 && |
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1917 !GetDicomEncoding(encoding, value.asCString()))) |
1934
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1918 { |
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d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1919 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1920 "Unknown encoding while creating DICOM from JSON: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
1921 value.toStyledString()); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1922 } |
2216
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1923 |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1924 if (value.asString().length() == 0) |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1925 { |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1926 return defaultEncoding; |
9a8fab016145
sample worklist plugin fine-tuning the C-Find query
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2209
diff
changeset
|
1927 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1928 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1929 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1930 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1931 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1932 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1933 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1934 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1935 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1936 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1937 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1938 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1939 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1940 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1941 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1942 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1943 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1944 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1945 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1946 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1947 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1948 bool decodeDataUriScheme, |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1949 Encoding defaultEncoding, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
1950 const std::string& privateCreator) |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1951 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1952 std::unique_ptr<DcmDataset> result(new DcmDataset); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1953 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1954 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1955 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1956 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1957 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1958 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1959 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1960 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1961 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1962 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1963 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1964 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1965 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1966 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1967 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1968 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1969 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1970 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1971 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1972 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1973 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1974 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1975 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1976 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1977 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1978 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1979 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1980 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1981 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1982 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1983 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1984 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1985 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1986 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1987 { |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
1988 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator)); |
4200 | 1989 |
1990 result->findAndDeleteElement(element->getTag()); | |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1991 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1992 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1993 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1994 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1995 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1996 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1997 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1998 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1999 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2000 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2001 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2002 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2003 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2004 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2005 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2006 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2007 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2008 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2009 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2010 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2011 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2012 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2013 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2014 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2015 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2016 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2017 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2018 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2019 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2020 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2021 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2022 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2023 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2024 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2025 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
2026 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2027 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2028 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2029 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2030 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2031 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2032 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2033 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2034 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2035 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2036 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2037 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2038 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3708
diff
changeset
|
2039 std::unique_ptr<DcmFileFormat> result(new DcmFileFormat); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2040 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2041 result->transferInit(); |
3771
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2042 |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2043 /** |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2044 * New in Orthanc 1.6.0: The "size" is given as an argument to the |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2045 * "read()" method. This can avoid huge memory consumption if |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2046 * parsing an invalid DICOM file, which can notably been observed |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2047 * by executing the integration test "test_upload_compressed" on |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2048 * valgrind running Orthanc. |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2049 **/ |
74889e6f6d68
fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3769
diff
changeset
|
2050 if (!result->read(is, EXS_Unknown, EGL_noChange, size).good()) |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2051 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2052 throw OrthancException(ErrorCode_BadFileFormat, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2053 "Cannot parse an invalid DICOM file (size: " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2054 boost::lexical_cast<std::string>(size) + " bytes)"); |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2055 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2056 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2057 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2058 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2059 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2060 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
2061 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2062 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2063 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2064 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2065 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2066 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2067 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2068 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2069 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2070 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2071 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2072 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2073 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2074 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2075 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2076 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2077 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2078 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2079 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2080 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2081 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2082 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2083 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2084 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
2085 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2086 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
2087 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2088 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2089 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2090 void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset, |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2091 Encoding source, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2092 bool hasSourceCodeExtensions, |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2093 Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2094 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2095 // Recursive exploration of a dataset to change the encoding of |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2096 // each string-like element |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2097 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2098 if (source == target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2099 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2100 return; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2101 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2102 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2103 for (unsigned long i = 0; i < dataset.card(); i++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2104 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2105 DcmElement* element = dataset.getElement(i); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2106 if (element) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2107 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2108 if (element->isLeaf()) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2109 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2110 char *c = NULL; |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2111 if (element->isaString() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2112 element->getString(c).good() && |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2113 c != NULL) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2114 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2115 std::string a = Toolbox::ConvertToUtf8(c, source, hasSourceCodeExtensions); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2116 std::string b = Toolbox::ConvertFromUtf8(a, target); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2117 element->putString(b.c_str()); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2118 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2119 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2120 else |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2121 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2122 // "All subclasses of DcmElement except for DcmSequenceOfItems |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2123 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2124 // etc. are not." The following dynamic_cast is thus OK. |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2125 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2126 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2127 for (unsigned long j = 0; j < sequence.card(); j++) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2128 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2129 ChangeStringEncoding(*sequence.getItem(j), source, hasSourceCodeExtensions, target); |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2130 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2131 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2132 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2133 } |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2172
diff
changeset
|
2134 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2135 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2207
diff
changeset
|
2136 |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2137 void FromDcmtkBridge::InitializeCodecs() |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2138 { |
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2364
diff
changeset
|
2139 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
2528
832217e4e872
old warnings turned into info
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2522
diff
changeset
|
2140 LOG(INFO) << "Registering JPEG Lossless codecs in DCMTK"; |
3727
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3712
diff
changeset
|
2141 DJLSDecoderRegistration::registerCodecs(); |
090022f1b5e1
auto-generation of primitives to handle transfer syntaxes
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2142 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2143 DJLSEncoderRegistration::registerCodecs(); |
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2144 # endif |
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2145 #endif |
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2146 |
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2147 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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2148 LOG(INFO) << "Registering JPEG codecs in DCMTK"; |
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2149 DJDecoderRegistration::registerCodecs(); |
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2150 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2151 DJEncoderRegistration::registerCodecs(); |
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2152 # endif |
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2153 #endif |
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2154 |
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2155 LOG(INFO) << "Registering RLE codecs in DCMTK"; |
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2156 DcmRLEDecoderRegistration::registerCodecs(); |
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2157 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2158 DcmRLEEncoderRegistration::registerCodecs(); |
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2159 #endif |
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2160 } |
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2161 |
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2162 |
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2163 void FromDcmtkBridge::FinalizeCodecs() |
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2164 { |
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2165 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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2166 // Unregister JPEG-LS codecs |
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2167 DJLSDecoderRegistration::cleanup(); |
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2168 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2169 DJLSEncoderRegistration::cleanup(); |
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2170 # endif |
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2171 #endif |
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2172 |
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2173 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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2174 // Unregister JPEG codecs |
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2175 DJDecoderRegistration::cleanup(); |
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2176 # if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2177 DJEncoderRegistration::cleanup(); |
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2178 # endif |
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2179 #endif |
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2180 |
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2181 DcmRLEDecoderRegistration::cleanup(); |
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2182 #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 |
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2183 DcmRLEEncoderRegistration::cleanup(); |
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2184 #endif |
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2185 } |
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2186 |
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2187 |
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2188 |
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2189 // Forward declaration |
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2190 static void ApplyVisitorToElement(DcmElement& element, |
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2191 ITagVisitor& visitor, |
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2192 const std::vector<DicomTag>& parentTags, |
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2193 const std::vector<size_t>& parentIndexes, |
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2194 Encoding encoding, |
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2195 bool hasCodeExtensions); |
2499
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2196 |
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2197 static void ApplyVisitorToDataset(DcmItem& dataset, |
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2198 ITagVisitor& visitor, |
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2199 const std::vector<DicomTag>& parentTags, |
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2200 const std::vector<size_t>& parentIndexes, |
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2201 Encoding encoding, |
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2202 bool hasCodeExtensions) |
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2203 { |
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2204 assert(parentTags.size() == parentIndexes.size()); |
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2205 |
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2206 for (unsigned long i = 0; i < dataset.card(); i++) |
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2207 { |
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2208 DcmElement* element = dataset.getElement(i); |
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2209 if (element == NULL) |
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2210 { |
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2211 throw OrthancException(ErrorCode_InternalError); |
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2212 } |
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2213 else |
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2214 { |
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2215 ApplyVisitorToElement(*element, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions); |
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2216 } |
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2217 } |
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2218 } |
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2219 |
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2220 |
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2221 static void ApplyVisitorToLeaf(DcmElement& element, |
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2222 ITagVisitor& visitor, |
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2223 const std::vector<DicomTag>& parentTags, |
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2224 const std::vector<size_t>& parentIndexes, |
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2225 const DicomTag& tag, |
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2226 Encoding encoding, |
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2227 bool hasCodeExtensions) |
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2228 { |
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2229 // TODO - Merge this function, that is more recent, with ConvertLeafElement() |
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2230 |
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2231 assert(element.isLeaf()); |
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2232 |
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2233 DcmEVR evr = element.getTag().getEVR(); |
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2234 |
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2235 |
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2236 /** |
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2237 * Fix the EVR for types internal to DCMTK |
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2238 **/ |
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2239 |
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2240 if (evr == EVR_ox) // OB or OW depending on context |
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2241 { |
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2242 evr = EVR_OB; |
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2243 } |
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2244 |
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2245 if (evr == EVR_UNKNOWN || // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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2246 evr == EVR_UNKNOWN2B) // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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2247 { |
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2248 evr = EVR_UN; |
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2249 } |
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2250 |
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2251 const ValueRepresentation vr = FromDcmtkBridge::Convert(evr); |
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2252 |
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2253 |
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diff
changeset
|
2254 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2255 * Deal with binary data (including PixelData). |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2256 **/ |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2257 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2258 if (evr == EVR_OB || // other byte |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2259 evr == EVR_OW || // other word |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2260 evr == EVR_UN) // unknown value representation |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2261 { |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2262 Uint16* data16 = NULL; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2263 Uint8* data = NULL; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2264 |
3199
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2265 if (evr == EVR_OW && |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2266 element.getUint16Array(data16) == EC_Normal) |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2267 { |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2268 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data16, element.getLength()); |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2269 } |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2270 else if (evr != EVR_OW && |
9316f341e40f
unit testing json for dicomweb
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3198
diff
changeset
|
2271 element.getUint8Array(data) == EC_Normal) |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2272 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2273 visitor.VisitBinary(parentTags, parentIndexes, tag, vr, data, element.getLength()); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2274 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2275 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2276 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2277 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2278 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2279 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2280 return; // We're done |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2281 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2282 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2283 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2284 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2285 * Deal with plain strings (and convert them to UTF-8) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2286 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2287 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2288 char *c = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2289 if (element.isaString() && |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2290 element.getString(c).good()) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2291 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2292 std::string utf8; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2293 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2294 if (c != NULL) // This case corresponds to the empty string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2295 { |
3448
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2296 if (element.getTag() == DCM_SpecificCharacterSet) |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2297 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2298 utf8.assign(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2299 } |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2300 else |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2301 { |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2302 std::string s(c); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2303 utf8 = Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions); |
b3bdd6dc10f2
don't change encoding of SpecificCharacterSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3302
diff
changeset
|
2304 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2305 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2306 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2307 std::string newValue; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2308 ITagVisitor::Action action = visitor.VisitString |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2309 (newValue, parentTags, parentIndexes, tag, vr, utf8); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2310 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2311 switch (action) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2312 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2313 case ITagVisitor::Action_None: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2314 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2315 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2316 case ITagVisitor::Action_Replace: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2317 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2318 std::string s = Toolbox::ConvertFromUtf8(newValue, encoding); |
2522
ce2dfba9417c
fix build with dcmtk 3.6.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2513
diff
changeset
|
2319 if (element.putString(s.c_str()) != EC_Normal) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2320 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2321 throw OrthancException(ErrorCode_InternalError, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2322 "Cannot replace value of tag: " + tag.Format()); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2323 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2324 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2325 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2326 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2327 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2328 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2329 throw OrthancException(ErrorCode_InternalError); |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2330 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2331 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2332 return; // We're done |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2333 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2334 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2335 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2336 try |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2337 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2338 // http://support.dcmtk.org/docs/dcvr_8h-source.html |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2339 switch (evr) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2340 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2341 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2342 /** |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2343 * Plain string values. |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2344 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2345 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2346 case EVR_DS: // decimal string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2347 case EVR_IS: // integer string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2348 case EVR_AS: // age string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2349 case EVR_DA: // date string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2350 case EVR_DT: // date time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2351 case EVR_TM: // time string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2352 case EVR_AE: // application entity title |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2353 case EVR_CS: // code string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2354 case EVR_SH: // short string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2355 case EVR_LO: // long string |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2356 case EVR_ST: // short text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2357 case EVR_LT: // long text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2358 case EVR_UT: // unlimited text |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2359 case EVR_PN: // person name |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2360 case EVR_UI: // unique identifier |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2361 { |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2362 Uint8* data = NULL; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2363 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2364 if (element.getUint8Array(data) == EC_Normal) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2365 { |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2366 const Uint32 length = element.getLength(); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2367 Uint32 l = 0; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2368 while (l < length && |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2369 data[l] != 0) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2370 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2371 l++; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2372 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2373 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2374 if (l == length) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2375 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2376 // Not a null-terminated plain string |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2377 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2378 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2379 else |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2380 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2381 std::string ignored; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2382 std::string s(reinterpret_cast<const char*>(data), l); |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2383 ITagVisitor::Action action = visitor.VisitString |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2384 (ignored, parentTags, parentIndexes, tag, vr, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2385 Toolbox::ConvertToUtf8(s, encoding, hasCodeExtensions)); |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2386 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2387 if (action != ITagVisitor::Action_None) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2388 { |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2389 LOG(WARNING) << "Cannot replace this string tag: " |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2390 << FromDcmtkBridge::GetTagName(element) |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2391 << " (" << tag.Format() << ")"; |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2392 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2393 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2394 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2395 else |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2396 { |
3195 | 2397 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2398 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2399 |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2400 return; |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2401 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2402 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2403 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2404 * Numeric types |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2405 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2406 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2407 case EVR_SL: // signed long |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2408 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2409 DcmSignedLong& content = dynamic_cast<DcmSignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2410 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2411 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2412 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2413 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2414 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2415 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2416 Sint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2417 if (content.getSint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2418 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2419 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2420 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2421 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2422 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2423 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2424 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2425 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2426 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2427 case EVR_SS: // signed short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2428 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2429 DcmSignedShort& content = dynamic_cast<DcmSignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2430 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2431 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2432 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2433 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2434 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2435 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2436 Sint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2437 if (content.getSint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2438 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2439 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2440 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2441 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2442 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2443 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2444 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2445 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2446 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2447 case EVR_UL: // unsigned long |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2448 #if DCMTK_VERSION_NUMBER >= 362 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2449 case EVR_OL: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2450 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2451 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2452 DcmUnsignedLong& content = dynamic_cast<DcmUnsignedLong&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2453 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2454 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2455 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2456 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2457 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2458 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2459 Uint32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2460 if (content.getUint32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2461 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2462 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2463 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2464 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2465 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2466 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2467 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2468 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2469 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2470 case EVR_US: // unsigned short |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2471 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2472 DcmUnsignedShort& content = dynamic_cast<DcmUnsignedShort&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2473 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2474 std::vector<int64_t> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2475 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2476 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2477 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2478 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2479 Uint16 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2480 if (content.getUint16(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2481 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2482 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2483 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2484 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2485 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2486 visitor.VisitIntegers(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2487 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2488 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2489 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2490 case EVR_FL: // float single-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2491 case EVR_OF: |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2492 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2493 DcmFloatingPointSingle& content = dynamic_cast<DcmFloatingPointSingle&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2494 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2495 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2496 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2497 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2498 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2499 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2500 Float32 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2501 if (content.getFloat32(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2502 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2503 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2504 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2505 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2506 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2507 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2508 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2509 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2510 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2511 case EVR_FD: // float double-precision |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2512 #if DCMTK_VERSION_NUMBER >= 361 |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2513 case EVR_OD: |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3651
diff
changeset
|
2514 #endif |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2515 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2516 DcmFloatingPointDouble& content = dynamic_cast<DcmFloatingPointDouble&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2517 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2518 std::vector<double> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2519 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2520 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2521 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2522 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2523 Float64 f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2524 if (content.getFloat64(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2525 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2526 values.push_back(f); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2527 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2528 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2529 |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2530 visitor.VisitDoubles(parentTags, parentIndexes, tag, vr, values); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2531 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2532 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2533 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2534 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2535 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2536 * Attribute tag. |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2537 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2538 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2539 case EVR_AT: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2540 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2541 DcmAttributeTag& content = dynamic_cast<DcmAttributeTag&>(element); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2542 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2543 std::vector<DicomTag> values; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2544 values.reserve(content.getVM()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2545 |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2546 for (unsigned long i = 0; i < content.getVM(); i++) |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2547 { |
3194
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2548 DcmTagKey f; |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2549 if (content.getTagVal(f, i).good()) |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2550 { |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2551 DicomTag t(f.getGroup(), f.getElement()); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2552 values.push_back(t); |
47ef29168698
support of value multiplicity in ITagVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3156
diff
changeset
|
2553 } |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2554 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2555 |
3195 | 2556 assert(vr == ValueRepresentation_AttributeTag); |
2557 visitor.VisitAttributes(parentTags, parentIndexes, tag, values); | |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2558 break; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2559 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2560 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2561 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2562 /** |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2563 * Sequence types, should never occur at this point because of |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2564 * "element.isLeaf()". |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2565 **/ |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2566 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2567 case EVR_SQ: // sequence of items |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2568 { |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2569 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2570 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2571 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2572 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2573 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2574 * Internal to DCMTK. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2575 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2576 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2577 case EVR_xs: // SS or US depending on context |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2578 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2579 case EVR_na: // na="not applicable", for data which has no VR |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2580 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2581 case EVR_item: // used internally for items |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2582 case EVR_metainfo: // used internally for meta info datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2583 case EVR_dataset: // used internally for datasets |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2584 case EVR_fileFormat: // used internally for DICOM files |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2585 case EVR_dicomDir: // used internally for DICOMDIR objects |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2586 case EVR_dirRecord: // used internally for DICOMDIR records |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2587 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2588 case EVR_pixelItem: // used internally for pixel items in a compressed image |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2589 case EVR_PixelData: // used internally for uncompressed pixeld data |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2590 case EVR_OverlayData: // used internally for overlay data |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2591 { |
3195 | 2592 visitor.VisitNotSupported(parentTags, parentIndexes, tag, vr); |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2593 return; |
3198
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2594 } |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2595 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2596 |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2597 /** |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2598 * Default case. |
7724ed267b5c
unit testing dicomweb conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3195
diff
changeset
|
2599 **/ |
2499
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2600 |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2601 default: |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2602 return; |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2603 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2604 } |
83b8b6743531
ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2470
diff
changeset
|
2605 catch (boost::bad_lexical_cast&) |
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ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2606 { |
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ITagVisitor - for anonymization relationships
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diff
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|
2607 return; |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2608 } |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2609 catch (std::bad_cast&) |
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diff
changeset
|
2610 { |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2611 return; |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2612 } |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2613 } |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2614 |
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|
2615 |
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|
2616 static void ApplyVisitorToElement(DcmElement& element, |
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ITagVisitor - for anonymization relationships
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diff
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|
2617 ITagVisitor& visitor, |
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ITagVisitor - for anonymization relationships
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diff
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|
2618 const std::vector<DicomTag>& parentTags, |
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ITagVisitor - for anonymization relationships
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diff
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|
2619 const std::vector<size_t>& parentIndexes, |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2620 Encoding encoding, |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2621 bool hasCodeExtensions) |
2499
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diff
changeset
|
2622 { |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2623 assert(parentTags.size() == parentIndexes.size()); |
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ITagVisitor - for anonymization relationships
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diff
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|
2624 |
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|
2625 DicomTag tag(FromDcmtkBridge::Convert(element.getTag())); |
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ITagVisitor - for anonymization relationships
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changeset
|
2626 |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2627 if (element.isLeaf()) |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2628 { |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2629 ApplyVisitorToLeaf(element, visitor, parentTags, parentIndexes, tag, encoding, hasCodeExtensions); |
2499
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|
2630 } |
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ITagVisitor - for anonymization relationships
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diff
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|
2631 else |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2632 { |
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diff
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|
2633 // "All subclasses of DcmElement except for DcmSequenceOfItems |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2634 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2635 // etc. are not." The following dynamic_cast is thus OK. |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2636 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
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diff
changeset
|
2637 |
3195 | 2638 if (sequence.card() == 0) |
2639 { | |
2640 visitor.VisitEmptySequence(parentTags, parentIndexes, tag); | |
2641 } | |
2642 else | |
2499
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diff
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|
2643 { |
3195 | 2644 std::vector<DicomTag> tags = parentTags; |
2645 std::vector<size_t> indexes = parentIndexes; | |
2646 tags.push_back(tag); | |
2647 indexes.push_back(0); | |
2648 | |
2649 for (unsigned long i = 0; i < sequence.card(); i++) | |
2650 { | |
2651 indexes.back() = static_cast<size_t>(i); | |
2652 DcmItem* child = sequence.getItem(i); | |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2653 ApplyVisitorToDataset(*child, visitor, tags, indexes, encoding, hasCodeExtensions); |
3195 | 2654 } |
2499
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diff
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|
2655 } |
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|
2656 } |
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diff
changeset
|
2657 } |
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diff
changeset
|
2658 |
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diff
changeset
|
2659 |
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changeset
|
2660 void FromDcmtkBridge::Apply(DcmItem& dataset, |
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changeset
|
2661 ITagVisitor& visitor, |
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diff
changeset
|
2662 Encoding defaultEncoding) |
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diff
changeset
|
2663 { |
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changeset
|
2664 std::vector<DicomTag> parentTags; |
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ITagVisitor - for anonymization relationships
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diff
changeset
|
2665 std::vector<size_t> parentIndexes; |
3217
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2666 bool hasCodeExtensions; |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3209
diff
changeset
|
2667 Encoding encoding = DetectEncoding(hasCodeExtensions, dataset, defaultEncoding); |
cf8cbeb35f33
preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
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3209
diff
changeset
|
2668 ApplyVisitorToDataset(dataset, visitor, parentTags, parentIndexes, encoding, hasCodeExtensions); |
2499
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diff
changeset
|
2669 } |
3882
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2670 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2671 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2672 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2673 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2674 DcmFileFormat& dicom) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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3881
diff
changeset
|
2675 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2676 if (dicom.getDataset() == NULL) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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3881
diff
changeset
|
2677 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2678 throw OrthancException(ErrorCode_InternalError); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2679 } |
4334
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
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4313
diff
changeset
|
2680 else |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2681 { |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2682 return LookupOrthancTransferSyntax(target, *dicom.getDataset()); |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
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4313
diff
changeset
|
2683 } |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2684 } |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2685 |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2686 |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2687 bool FromDcmtkBridge::LookupOrthancTransferSyntax(DicomTransferSyntax& target, |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2688 DcmDataset& dataset) |
b2366bc023f8
Fix access to videos as a single raw frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4313
diff
changeset
|
2689 { |
3883
795c9ca5eb91
DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3882
diff
changeset
|
2690 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
3882
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2691 if (xfer == EXS_Unknown) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2692 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2693 dataset.updateOriginalXfer(); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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3881
diff
changeset
|
2694 xfer = dataset.getOriginalXfer(); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2695 if (xfer == EXS_Unknown) |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3881
diff
changeset
|
2696 { |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2697 throw OrthancException(ErrorCode_BadFileFormat, |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2698 "Cannot determine the transfer syntax of the DICOM instance"); |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2699 } |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2700 } |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2701 |
904575738462
implemented IDicomTranscoder::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2702 return FromDcmtkBridge::LookupOrthancTransferSyntax(target, xfer); |
904575738462
implemented IDicomTranscoder::Store()
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diff
changeset
|
2703 } |
4501
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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4476
diff
changeset
|
2704 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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diff
changeset
|
2705 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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4476
diff
changeset
|
2706 void FromDcmtkBridge::LogMissingTagsForStore(DcmDataset& dicom) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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diff
changeset
|
2707 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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parents:
4476
diff
changeset
|
2708 std::string patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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diff
changeset
|
2709 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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4476
diff
changeset
|
2710 const char* c = NULL; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2711 if (dicom.findAndGetString(DCM_PatientID, c).good() && |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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4476
diff
changeset
|
2712 c != NULL) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2713 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2714 patientId.assign(c); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2715 } |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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4476
diff
changeset
|
2716 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2717 c = NULL; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2718 if (dicom.findAndGetString(DCM_StudyInstanceUID, c).good() && |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2719 c != NULL) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2720 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
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diff
changeset
|
2721 studyInstanceUid.assign(c); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2722 } |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2723 |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2724 c = NULL; |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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4476
diff
changeset
|
2725 if (dicom.findAndGetString(DCM_SeriesInstanceUID, c).good() && |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
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4476
diff
changeset
|
2726 c != NULL) |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2727 { |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
diff
changeset
|
2728 seriesInstanceUid.assign(c); |
11c2ddb4e2ca
FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4476
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changeset
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2729 } |
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FromDcmtkBridge::LogMissingTagsForStore()
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2730 |
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2731 c = NULL; |
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2732 if (dicom.findAndGetString(DCM_SOPInstanceUID, c).good() && |
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2733 c != NULL) |
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parents:
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2734 { |
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parents:
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2735 sopInstanceUid.assign(c); |
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parents:
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2736 } |
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parents:
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2737 |
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parents:
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2738 DicomMap::LogMissingTagsForStore(patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid); |
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2739 } |
0 | 2740 } |
3730
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2741 |
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2742 |
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toolbox: LookupTransferSyntax()
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2743 #include "./FromDcmtkBridge_TransferSyntaxes.impl.h" |