Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Toolbox/DicomStructureSet.h @ 1893:90b5e116a5f9

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
removed DicomStructureSet::GetStructureColor()
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 19 Jan 2022 14:01:57 +0100
parents cdf91ad891a5
children 14c8f339d480
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
1871
7053b8a0aaec upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1870
diff changeset
5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
7053b8a0aaec upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1870
diff changeset
6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
9 * modify it under the terms of the GNU Lesser General Public License
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
11 * the License, or (at your option) any later version.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
16 * Lesser General Public License for more details.
1596
4fb8fdf03314 removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1571
diff changeset
17 *
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
18 * You should have received a copy of the GNU Lesser General Public
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
19 * License along with this program. If not, see
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
20 * <http://www.gnu.org/licenses/>.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 **/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #pragma once
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
1471
28c64c246312 working on a shared library
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1455
diff changeset
26 #include "../OrthancStone.h"
28c64c246312 working on a shared library
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1455
diff changeset
27
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
28 #if !defined(ORTHANC_ENABLE_DCMTK)
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
29 # error The macro ORTHANC_ENABLE_DCMTK must be defined
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
30 #endif
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
31
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
32 #include "DicomStructureSetUtils.h"
110
53025eecbc95 renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
33 #include "CoordinateSystem3D.h"
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
34 #include "Extent2D.h"
1504
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1471
diff changeset
35 #include "OrthancDatasets/FullOrthancDataset.h"
804
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
36 #include "../Scene2D/Color.h"
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
37 #include "../Scene2D/PolylineSceneLayer.h"
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
38 #include "../Scene2D/ScenePoint2D.h"
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
40 #if ORTHANC_ENABLE_DCMTK == 1
1455
30deba7bc8e2 simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1279
diff changeset
41 # include <DicomParsing/ParsedDicomFile.h>
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
42 #endif
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43
1006
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 1000
diff changeset
44 //#define USE_BOOST_UNION_FOR_POLYGONS 1
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
45
201
e9c7a78a3e77 removed absolute paths
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 196
diff changeset
46
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 #include <list>
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 namespace OrthancStone
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 class DicomStructureSet : public boost::noncopyable
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 private:
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
54 struct ReferencedSlice
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
55 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
56 std::string seriesInstanceUid_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
57 CoordinateSystem3D geometry_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
58 double thickness_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
59
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
60 ReferencedSlice()
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
61 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
62 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
63
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
64 ReferencedSlice(const std::string& seriesInstanceUid,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
65 const CoordinateSystem3D& geometry,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
66 double thickness) :
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
67 seriesInstanceUid_(seriesInstanceUid),
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
68 geometry_(geometry),
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
69 thickness_(thickness)
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
70 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
71 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
72 };
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
73
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
74 typedef std::map<std::string, ReferencedSlice> ReferencedSlices;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
75
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
76 typedef std::vector<Vector> Points;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
78 class Polygon
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 {
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
80 private:
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
81 std::string sopInstanceUid_;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
82 bool hasSlice_;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
83 CoordinateSystem3D geometry_;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
84 double projectionAlongNormal_;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
85 double sliceThickness_; // In millimeters
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
86 Points points_;
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
87 Extent2D extent_;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88
981
c20dbaab360c Ability to cope with empty "Referenced SOP Instance UID" (dicom path (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)) + better logs + code formating
Benjamin Golinvaux <bgo@osimis.io>
parents: 804
diff changeset
89 void CheckPointIsOnSlice(const Vector& v) const;
988
4c9b4c4de814 Fixed bug in DicomStructureSet that prevented points from being added to polygons
Benjamin Golinvaux <bgo@osimis.io>
parents: 981
diff changeset
90 bool IsPointOnSliceIfAny(const Vector& v) const;
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
91
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
92 public:
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1546
diff changeset
93 explicit Polygon(const std::string& sopInstanceUid) :
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
94 sopInstanceUid_(sopInstanceUid),
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1546
diff changeset
95 hasSlice_(false),
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1546
diff changeset
96 projectionAlongNormal_(0),
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1546
diff changeset
97 sliceThickness_(0)
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
98 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
99 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
100
132
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
101 void Reserve(size_t n)
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
102 {
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
103 points_.reserve(n);
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
104 }
35c2b85836ce fix rtstruct projections
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 131
diff changeset
105
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
106 void AddPoint(const Vector& v);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
107
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
108 bool UpdateReferencedSlice(const ReferencedSlices& slices);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
109
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
110 bool IsOnSlice(const CoordinateSystem3D& geometry) const;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
111
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
112 const Vector& GetGeometryOrigin() const
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
113 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
114 return geometry_.GetOrigin();
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
115 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
116
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
117 const std::string& GetSopInstanceUid() const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
118 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
119 return sopInstanceUid_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
120 }
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
121
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
122 const Points& GetPoints() const
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
123 {
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
124 return points_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
125 }
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
126
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
127 double GetSliceThickness() const
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
128 {
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
129 return sliceThickness_;
c9e88e7935a4 rt-struct projection
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 125
diff changeset
130 }
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
131
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
132 bool Project(double& x1,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
133 double& y1,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
134 double& x2,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
135 double& y2,
3e6163a53b16 optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 126
diff changeset
136 const CoordinateSystem3D& slice) const;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 typedef std::list<Polygon> Polygons;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 struct Structure
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 std::string name_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 std::string interpretation_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 Polygons polygons_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146 uint8_t red_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 uint8_t green_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 uint8_t blue_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151 typedef std::vector<Structure> Structures;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
153 Structures structures_;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
154 ReferencedSlices referencedSlices_;
1892
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
155 Vector estimatedNormal_;
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
156 double estimatedSliceThickness_;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157
1504
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1471
diff changeset
158 void Setup(const IDicomDataset& dataset);
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
159
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 const Structure& GetStructure(size_t index) const;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
162 Structure& GetStructure(size_t index);
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
163
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
164 bool ProjectStructure(
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
165 #if USE_BOOST_UNION_FOR_POLYGONS == 1
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
166 std::vector< std::vector<Point2D> >& polygons,
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
167 #else
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
168 std::vector< std::pair<Point2D, Point2D> >& segments,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
169 #endif
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
170 const Structure& structure,
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
171 const CoordinateSystem3D& slice) const;
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
172
1892
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
173 void EstimateGeometry();
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
174
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175 public:
1546
94750ef63ad5 support of Orthanc framework shared library
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
176 explicit DicomStructureSet(const FullOrthancDataset& instance)
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
177 {
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
178 Setup(instance);
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
179 }
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
181 #if ORTHANC_ENABLE_DCMTK == 1
1546
94750ef63ad5 support of Orthanc framework shared library
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
182 explicit DicomStructureSet(Orthanc::ParsedDicomFile& instance);
1180
9c8f557ea799 ParsedDicomDataset to speed up loading RT-STRUCT from parsed DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1178
diff changeset
183 #endif
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184
794
04f518ebd132 LoaderStateMachine
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
185 size_t GetStructuresCount() const
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187 return structures_.size();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 Vector GetStructureCenter(size_t index) const;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
192 const std::string& GetStructureName(size_t index) const;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194 const std::string& GetStructureInterpretation(size_t index) const;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195
804
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
196 Color GetStructureColor(size_t index) const;
61ba4b504e9a PolylineSceneLayer now has one color per chain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 794
diff changeset
197
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
198 void GetReferencedInstances(std::set<std::string>& instances) const;
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
199
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
200 void AddReferencedSlice(const std::string& sopInstanceUid,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
201 const std::string& seriesInstanceUid,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
202 const CoordinateSystem3D& geometry,
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
203 double thickness);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
204
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
205 void AddReferencedSlice(const Orthanc::DicomMap& dataset);
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
206
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
207 void CheckReferencedSlices();
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208
122
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
209 Vector GetNormal() const;
e3433dabfb8d refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
210
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
211 #if USE_BOOST_UNION_FOR_POLYGONS == 1
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
212 bool ProjectStructure(std::vector< std::vector<Point2D> >& polygons,
1165
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
213 size_t index,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
214 const CoordinateSystem3D& slice) const
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 {
125
44fc253d4876 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 122
diff changeset
216 return ProjectStructure(polygons, GetStructure(index), slice);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 }
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
218 #else
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
219 bool ProjectStructure(std::vector< std::pair<Point2D, Point2D> >& segments,
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
220 size_t index,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
221 const CoordinateSystem3D& slice) const
1000
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
222 {
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
223 return ProjectStructure(segments, GetStructure(index), slice);
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
224 }
50e5acf5553b changed RTSTRUCT rendering from polygons to segments
Benjamin Golinvaux <bgo@osimis.io>
parents: 988
diff changeset
225 #endif
1178
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
226
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
227 void ProjectOntoLayer(PolylineSceneLayer& layer,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
228 const CoordinateSystem3D& plane,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
229 size_t structureIndex,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
230 const Color& color) const;
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
231
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
232 void ProjectOntoLayer(PolylineSceneLayer& layer,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
233 const CoordinateSystem3D& plane,
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
234 size_t structureIndex) const
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
235 {
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
236 ProjectOntoLayer(layer, plane, structureIndex, GetStructureColor(structureIndex));
3c7cdbf32e2a DicomStructureSet::ProjectOntoLayer()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1170
diff changeset
237 }
1885
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
238
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
239 void GetStructurePoints(std::list< std::vector<Vector> >& target,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
240 size_t structureIndex,
ddaee6b96501 retrieving rt-struct info
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1871
diff changeset
241 const std::string& sopInstanceUid) const;
1890
6ce81914f7e4 added classes BucketAccumulator1D/2D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1885
diff changeset
242
1892
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
243 const Vector& GetEstimatedNormal() const
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
244 {
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
245 return estimatedNormal_;
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
246 }
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
247
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
248 const double GetEstimatedSliceThickness() const
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
249 {
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
250 return estimatedSliceThickness_;
cdf91ad891a5 estimated geometry of rt-struct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
251 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253 }