Mercurial > hg > orthanc-stl
annotate Sources/Plugin.cpp @ 74:ad9950628b35 default tip
use relative path to instances for reverse proxying
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
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| date | Tue, 15 Oct 2024 14:46:48 +0200 |
| parents | e94f177c3653 |
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| rev | line source |
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1 /** |
| 24 | 2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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3 * SPDX-License-Identifier: GPL-3.0-or-later |
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4 */ |
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5 |
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6 /** |
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7 * STL plugin for Orthanc |
| 24 | 8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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9 * |
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10 * This program is free software: you can redistribute it and/or |
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11 * modify it under the terms of the GNU General Public License as |
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12 * published by the Free Software Foundation, either version 3 of the |
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13 * License, or (at your option) any later version. |
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14 * |
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15 * This program is distributed in the hope that it will be useful, but |
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 * General Public License for more details. |
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19 * |
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20 * You should have received a copy of the GNU General Public License |
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 **/ |
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23 |
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24 |
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25 #if !defined(ORTHANC_ENABLE_NEXUS) |
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26 # error Macro ORTHANC_ENABLE_NEXUS must be defined |
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27 #endif |
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28 |
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29 #if !defined(ORTHANC_ENABLE_3DHOP) |
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30 # error Macro ORTHANC_ENABLE_3DHOP must be defined |
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31 #endif |
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32 |
| 72 | 33 #include "ResourcesCache.h" |
| 34 #include "STLToolbox.h" | |
| 35 | 35 #include "StructureSetGeometry.h" |
| 32 | 36 #include "VTKToolbox.h" |
| 40 | 37 |
| 38 #include <EmbeddedResources.h> | |
| 32 | 39 |
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40 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" |
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41 |
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42 #include <DicomParsing/FromDcmtkBridge.h> |
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43 #include <Images/ImageProcessing.h> |
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44 #include <Logging.h> |
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45 #include <SerializationToolbox.h> |
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46 #include <SystemToolbox.h> |
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47 |
| 33 | 48 #include <vtkNew.h> |
| 49 | |
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50 #include <boost/algorithm/string.hpp> |
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51 #include <boost/thread/shared_mutex.hpp> |
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52 |
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53 |
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54 #if ORTHANC_ENABLE_NEXUS == 1 |
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55 # include <Cache/MemoryStringCache.h> |
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56 #endif |
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57 |
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58 #define ORTHANC_PLUGIN_NAME "stl" |
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59 |
| 6 | 60 |
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61 #if ORTHANC_ENABLE_NEXUS == 1 |
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62 static const char* const ORTHANC_STL_PRIVATE_CREATOR = "OrthancSTL"; |
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63 static const char* const ORTHANC_STL_MANUFACTURER = "ORTHANC^STL"; |
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64 static const uint16_t ORTHANC_STL_PRIVATE_GROUP = 0x4205u; |
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65 static const uint16_t ORTHANC_STL_CREATOR_ELEMENT = 0x0010u; |
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66 static const uint16_t ORTHANC_STL_NEXUS_ELEMENT = 0x1001u; |
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67 static const Orthanc::DicomTag DICOM_TAG_CREATOR_VERSION_UID(0x0008, 0x9123); |
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68 |
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69 /** |
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70 * Each version of the STL plugin must provide a different value for |
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71 * the CreatorVersionUID (0008,9123) tag. A new UID can be generated |
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72 * by typing: |
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73 * |
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74 * $ python -c 'import pydicom; print(pydicom.uid.generate_uid())' |
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75 * |
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76 **/ |
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77 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE = "1.2.826.0.1.3680043.8.498.90514926286349109728701975613711986292"; |
| 60 | 78 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_1_1 = "1.2.826.0.1.3680043.8.498.13468660186379895313063577332103681503"; |
| 68 | 79 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_1_2 = "1.2.826.0.1.3680043.8.498.69380801008493335183088431949117714013"; |
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80 |
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81 static const char* const GetCreatorVersionUid(const std::string& version) |
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82 { |
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83 if (version == "mainline") |
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84 { |
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85 return ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE; |
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86 } |
| 60 | 87 else if (version == "1.1") |
| 88 { | |
| 89 return ORTHANC_STL_CREATOR_VERSION_UID_1_1; | |
| 90 } | |
| 68 | 91 else if (version == "1.2") |
| 92 { | |
| 93 return ORTHANC_STL_CREATOR_VERSION_UID_1_2; | |
| 94 } | |
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95 else |
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96 { |
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97 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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98 } |
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99 } |
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100 |
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101 static void FillOrthancExplorerCreatorVersionUid(std::map<std::string, std::string>& dictionary) |
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102 { |
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103 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE"] = ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE; |
| 60 | 104 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_1_1"] = ORTHANC_STL_CREATOR_VERSION_UID_1_1; |
| 68 | 105 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_1_2"] = ORTHANC_STL_CREATOR_VERSION_UID_1_2; |
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106 } |
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107 |
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108 #endif |
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109 |
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110 |
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111 static ResourcesCache cache_; |
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112 |
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113 void ServeFile(OrthancPluginRestOutput* output, |
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114 const char* url, |
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115 const OrthancPluginHttpRequest* request) |
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116 { |
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117 if (request->method != OrthancPluginHttpMethod_Get) |
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118 { |
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119 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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120 return; |
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121 } |
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122 |
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123 const std::string file = request->groups[0]; |
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124 |
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125 if (boost::starts_with(file, "basic-viewer/") || |
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126 boost::starts_with(file, "o3dv/")) |
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127 { |
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128 cache_.Answer(output, file); |
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129 } |
| 38 | 130 else |
| 131 { | |
| 132 Orthanc::EmbeddedResources::FileResourceId resourceId; | |
| 133 Orthanc::MimeType mimeType; | |
| 134 | |
| 135 if (file == "three.html") | |
| 136 { | |
| 137 resourceId = Orthanc::EmbeddedResources::THREE_HTML; | |
| 138 mimeType = Orthanc::MimeType_Html; | |
| 139 } | |
| 140 else if (file == "three.js") | |
| 141 { | |
| 142 resourceId = Orthanc::EmbeddedResources::THREE_JS; | |
| 143 mimeType = Orthanc::MimeType_JavaScript; | |
| 144 } | |
| 145 else if (file == "o3dv.html") | |
| 146 { | |
| 147 resourceId = Orthanc::EmbeddedResources::O3DV_HTML; | |
| 148 mimeType = Orthanc::MimeType_Html; | |
| 149 } | |
| 150 else if (file == "o3dv.js") | |
| 151 { | |
| 152 resourceId = Orthanc::EmbeddedResources::O3DV_JS; | |
| 153 mimeType = Orthanc::MimeType_JavaScript; | |
| 154 } | |
| 155 else | |
| 156 { | |
| 157 OrthancPluginSendHttpStatusCode(OrthancPlugins::GetGlobalContext(), output, 404); | |
| 158 return; | |
| 159 } | |
| 160 | |
| 161 std::string s; | |
| 162 Orthanc::EmbeddedResources::GetFileResource(s, resourceId); | |
| 163 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(mimeType)); | |
| 164 } | |
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165 } |
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166 |
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167 |
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168 |
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169 |
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170 #include <dcmtk/dcmdata/dcfilefo.h> |
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171 #include <dcmtk/dcmdata/dcsequen.h> |
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172 #include <dcmtk/dcmdata/dcuid.h> |
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173 |
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174 |
| 40 | 175 namespace |
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176 { |
| 40 | 177 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller |
| 178 { | |
| 179 private: | |
| 180 Orthanc::ImageAccessor& target_; | |
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181 |
| 40 | 182 public: |
| 183 explicit XorFiller(Orthanc::ImageAccessor& target) : | |
| 184 target_(target) | |
| 185 { | |
| 186 } | |
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187 |
| 40 | 188 virtual void Fill(int y, |
| 189 int x1, | |
| 190 int x2) ORTHANC_OVERRIDE | |
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191 { |
| 40 | 192 assert(x1 <= x2); |
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193 |
| 40 | 194 if (y >= 0 && |
| 195 y < static_cast<int>(target_.GetHeight())) | |
| 196 { | |
| 197 x1 = std::max(x1, 0); | |
| 198 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1); | |
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199 |
| 40 | 200 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1; |
| 201 | |
| 202 for (int i = x1; i <= x2; i++, p++) | |
| 203 { | |
| 204 *p = (*p ^ 0xff); | |
| 205 } | |
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206 } |
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207 } |
| 40 | 208 }; |
| 209 } | |
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210 |
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211 |
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212 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId) |
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213 { |
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214 std::string dicom; |
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215 |
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216 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false)) |
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217 { |
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218 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); |
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219 } |
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220 else |
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221 { |
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222 return new Orthanc::ParsedDicomFile(dicom); |
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223 } |
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224 } |
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225 |
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226 |
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227 static void GetReferencedVolumeAxes(Vector3D& axisX, |
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228 Vector3D& axisY, |
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229 const StructureSet& structureSet) |
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230 { |
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231 // This is a rough guess for the X/Y axes |
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232 axisX = Vector3D(1, 0, 0); |
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233 axisY = Vector3D(0, 1, 0); |
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234 |
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235 // Look for one instance from the referenced volume |
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236 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid(); |
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237 |
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238 Json::Value response; |
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239 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false)) |
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240 { |
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241 if (response.type() != Json::arrayValue) |
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242 { |
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243 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); |
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244 } |
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245 |
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246 bool first = true; |
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247 |
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248 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++) |
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249 { |
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250 if (response[i].type() != Json::objectValue) |
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251 { |
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252 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); |
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253 } |
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254 |
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255 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance") |
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256 { |
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257 if (first) |
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258 { |
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259 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID"); |
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260 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId)); |
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261 |
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262 std::string imageOrientation; |
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263 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT)) |
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264 { |
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265 std::vector<std::string> items; |
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266 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\'); |
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267 |
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268 double x1, x2, x3, y1, y2, y3; |
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269 |
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270 if (items.size() == 6 && |
| 33 | 271 STLToolbox::MyParseDouble(x1, items[0]) && |
| 272 STLToolbox::MyParseDouble(x2, items[1]) && | |
| 273 STLToolbox::MyParseDouble(x3, items[2]) && | |
| 274 STLToolbox::MyParseDouble(y1, items[3]) && | |
| 275 STLToolbox::MyParseDouble(y2, items[4]) && | |
| 276 STLToolbox::MyParseDouble(y3, items[5])) | |
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277 { |
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278 axisX = Vector3D(x1, x2, x3); |
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279 axisY = Vector3D(y1, y2, y3); |
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280 } |
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281 } |
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282 } |
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283 else |
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284 { |
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285 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError, |
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286 "Multiple instances with the same SOP Instance UID"); |
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287 } |
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288 } |
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289 } |
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290 } |
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291 } |
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292 |
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293 |
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294 static bool EncodeStructureSetMesh(std::string& stl, |
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295 const StructureSet& structureSet, |
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296 const StructureSetGeometry& geometry, |
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297 const std::set<std::string>& roiNames, |
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298 unsigned int resolution, |
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299 bool smooth) |
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300 { |
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301 if (resolution < 1 || |
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302 structureSet.GetPolygonsCount() < 1) |
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303 { |
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304 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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305 } |
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306 |
| 33 | 307 if (!STLToolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm())) |
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308 { |
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309 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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310 } |
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311 |
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312 Vector3D axisX, axisY; |
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313 GetReferencedVolumeAxes(axisX, axisY, structureSet); |
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314 |
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315 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY); |
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316 |
| 33 | 317 if (!STLToolbox::IsNear(1, axisX.ComputeNorm()) || |
| 318 !STLToolbox::IsNear(1, axisY.ComputeNorm()) || | |
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319 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal())) |
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320 { |
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321 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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322 } |
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323 |
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324 Extent2D extent; |
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325 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++) |
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326 { |
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327 structureSet.GetPolygon(i).Add(extent, axisX, axisY); |
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328 } |
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329 |
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330 const int depth = geometry.GetSlicesCount(); |
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331 |
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332 vtkNew<vtkImageData> volume; |
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333 volume->SetDimensions(resolution, resolution, depth); |
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334 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1); |
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335 |
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336 assert(sizeof(unsigned char) == 1); |
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337 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth); |
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338 |
| 30 | 339 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution); |
| 340 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution); | |
| 341 const double pixelSpacingZ = geometry.GetSlicesSpacing(); | |
| 342 | |
| 343 bool first = true; | |
| 344 | |
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345 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++) |
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346 { |
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347 const StructurePolygon& polygon = structureSet.GetPolygon(i); |
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348 if (roiNames.find(polygon.GetRoiName()) != roiNames.end()) |
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349 { |
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350 // This polygon corresponds to a ROI of interest |
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351 |
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352 size_t z; |
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353 if (geometry.LookupSliceIndex(z, polygon)) |
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354 { |
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355 std::vector<Orthanc::ImageProcessing::ImagePoint> points; |
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356 points.reserve(polygon.GetPointsCount()); |
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357 |
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358 for (size_t j = 0; j < polygon.GetPointsCount(); j++) |
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359 { |
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360 const Vector3D& point = polygon.GetPoint(j); |
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361 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution); |
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362 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution); |
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363 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)), |
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364 static_cast<int32_t>(std::floor(y)))); |
| 30 | 365 |
| 366 if (first) | |
| 367 { | |
| 368 first = false; | |
| 369 volume->SetOrigin(point.GetX() - x * pixelSpacingX, | |
| 370 point.GetY() - y * pixelSpacingY, | |
| 371 point.GetZ() - z * pixelSpacingZ); | |
| 372 } | |
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373 } |
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374 |
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375 Orthanc::ImageAccessor slice; |
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376 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */, |
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377 reinterpret_cast<uint8_t*>(volume->GetScalarPointer()) + z * resolution * resolution); |
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378 |
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379 XorFiller filler(slice); |
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380 Orthanc::ImageProcessing::FillPolygon(filler, points); |
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381 } |
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382 } |
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383 } |
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384 |
| 30 | 385 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ); |
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386 |
| 32 | 387 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth); |
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388 } |
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389 |
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390 |
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391 void ListStructures(OrthancPluginRestOutput* output, |
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392 const char* url, |
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393 const OrthancPluginHttpRequest* request) |
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394 { |
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395 if (request->method != OrthancPluginHttpMethod_Get) |
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396 { |
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397 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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398 return; |
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399 } |
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400 |
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401 const std::string instanceId(request->groups[0]); |
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402 |
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403 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
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404 |
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405 std::set<std::string> names; |
| 33 | 406 StructureSet::ListStructuresNames(names, *dicom); |
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407 |
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408 Json::Value answer = Json::arrayValue; |
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409 |
|
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410 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it) |
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411 { |
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412 answer.append(*it); |
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413 } |
|
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414 |
|
3
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415 std::string s = answer.toStyledString(); |
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416 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); |
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417 } |
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418 |
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419 |
|
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420 static void AddDefaultTagValue(Json::Value& target, |
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421 const Orthanc::DicomTag& tag, |
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422 const std::string& value) |
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423 { |
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424 if (!target.isMember(tag.Format())) |
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425 { |
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426 target[tag.Format()] = value; |
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427 } |
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428 } |
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429 |
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430 |
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431 static void AddDefaultTagValue(Json::Value& target, |
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432 const DcmTagKey& tag, |
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433 const std::string& value) |
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434 { |
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435 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value); |
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436 } |
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437 |
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438 |
| 7 | 439 static void CallCreateDicom(Json::Value& answer, |
| 440 const std::string& stl, | |
| 441 const Json::Value& body, | |
| 442 const std::string& parentStudy, | |
| 443 const std::string& defaultSeriesDescription, | |
| 444 const std::string& defaultFrameOfReferenceUid, | |
| 445 const std::string& defaultTitle) | |
| 446 { | |
| 447 static const char* const KEY_TAGS = "Tags"; | |
| 448 | |
| 449 Json::Value normalized = Json::objectValue; | |
| 450 | |
| 451 if (body.isMember(KEY_TAGS)) | |
| 452 { | |
| 453 const Json::Value& tags = body[KEY_TAGS]; | |
| 454 | |
| 455 if (tags.type() != Json::objectValue) | |
| 456 { | |
| 457 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object"); | |
| 458 } | |
| 459 | |
| 460 std::vector<std::string> keys = tags.getMemberNames(); | |
| 461 for (size_t i = 0; i < keys.size(); i++) | |
| 462 { | |
| 463 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]); | |
| 464 normalized[tag.Format()] = tags[keys[i]]; | |
| 465 } | |
| 466 } | |
| 467 | |
| 468 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format())) | |
| 469 { | |
| 470 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription; | |
| 471 } | |
| 472 | |
| 473 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1"); | |
| 474 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid); | |
| 475 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1"); | |
| 476 | |
| 477 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO"); | |
| 478 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION); | |
| 479 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle); | |
| 480 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin"); | |
| 481 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin"); | |
| 482 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, ""); | |
| 483 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION); | |
| 484 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, ""); | |
| 485 | |
| 486 std::string date, time; | |
| 487 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); | |
| 488 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time); | |
| 489 | |
| 490 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(), | |
| 491 DCM_MeasurementUnitsCodeSequence.getElement()); | |
| 492 | |
| 493 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format())) | |
| 494 { | |
| 495 Json::Value item; | |
| 496 item["CodeValue"] = "mm"; | |
| 497 item["CodingSchemeDesignator"] = "UCUM"; | |
| 498 item["CodeMeaning"] = defaultTitle; | |
| 499 | |
| 500 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item); | |
| 501 } | |
| 502 | |
| 503 std::string content; | |
| 504 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl); | |
| 505 | |
| 506 Json::Value create; | |
| 507 create["Content"] = content; | |
| 508 create["Parent"] = parentStudy; | |
| 509 create["Tags"] = normalized; | |
| 510 | |
| 511 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false)) | |
| 512 { | |
| 513 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL"); | |
| 514 } | |
| 515 } | |
| 516 | |
| 517 | |
| 518 void EncodeStructureSet(OrthancPluginRestOutput* output, | |
| 519 const char* url, | |
| 520 const OrthancPluginHttpRequest* request) | |
|
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521 { |
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522 static const char* const KEY_INSTANCE = "Instance"; |
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523 static const char* const KEY_RESOLUTION = "Resolution"; |
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524 static const char* const KEY_ROI_NAMES = "RoiNames"; |
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525 static const char* const KEY_SMOOTH = "Smooth"; |
|
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526 static const char* const KEY_STRICT = "Strict"; |
|
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527 |
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528 if (request->method != OrthancPluginHttpMethod_Post) |
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529 { |
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530 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST"); |
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531 return; |
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532 } |
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|
533 |
|
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|
534 Json::Value body; |
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535 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize)) |
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|
536 { |
|
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537 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
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|
538 } |
|
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|
539 |
|
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|
540 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE); |
|
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|
541 const bool smooth = (body.isMember(KEY_SMOOTH) ? |
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|
542 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) : |
|
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|
543 true /* smooth by default */); |
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544 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ? |
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|
545 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) : |
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|
546 256 /* default value */); |
|
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|
547 const bool strict = (body.isMember(KEY_STRICT) ? |
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|
548 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) : |
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|
549 true /* strict by default */); |
|
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|
550 |
|
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|
551 std::set<std::string> roiNames; |
|
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|
552 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES); |
|
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|
553 |
|
3
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|
554 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
|
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changeset
|
555 |
|
0fb06c6a6c87
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|
556 StructureSet structureSet(*dicom); |
|
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|
557 |
|
28
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|
558 StructureSetGeometry geometry(structureSet, strict); |
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|
559 |
|
3
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changeset
|
560 std::string stl; |
|
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diff
changeset
|
561 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth)) |
|
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encoding of RT-STRUCT as STL
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changeset
|
562 { |
|
8
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diff
changeset
|
563 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT"); |
|
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|
564 } |
|
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|
565 else |
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encoding of RT-STRUCT as STL
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changeset
|
566 { |
| 7 | 567 std::string seriesDescription; |
|
1
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encoding of RT-STRUCT as STL
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diff
changeset
|
568 |
| 7 | 569 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION)) |
|
1
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encoding of RT-STRUCT as STL
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diff
changeset
|
570 { |
| 7 | 571 seriesDescription += ": "; |
| 572 } | |
| 573 else | |
| 574 { | |
| 575 seriesDescription.clear(); | |
|
1
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encoding of RT-STRUCT as STL
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diff
changeset
|
576 } |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
577 |
| 7 | 578 bool first = true; |
| 579 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it) | |
|
1
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encoding of RT-STRUCT as STL
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changeset
|
580 { |
| 7 | 581 if (first) |
|
1
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encoding of RT-STRUCT as STL
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diff
changeset
|
582 { |
| 7 | 583 first = false; |
|
1
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encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
584 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
585 else |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
586 { |
| 7 | 587 seriesDescription += ", "; |
|
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
588 } |
|
2
2bdb9acb7dcf
added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1
diff
changeset
|
589 |
| 7 | 590 seriesDescription += *it; |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
591 } |
|
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
592 |
| 7 | 593 std::string frameOfReferenceUid; |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
594 if (structureSet.HasFrameOfReferenceUid()) |
|
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
595 { |
| 7 | 596 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid(); |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
597 } |
|
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
598 else |
|
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
599 { |
| 7 | 600 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance); |
|
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
601 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
602 |
| 7 | 603 Json::Value answer; |
| 604 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription, | |
| 605 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT"); | |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
606 |
| 7 | 607 std::string s = answer.toStyledString(); |
| 608 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); | |
|
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
609 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
610 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
611 |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
612 |
|
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
613 void ExtractStl(OrthancPluginRestOutput* output, |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
614 const char* url, |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
615 const OrthancPluginHttpRequest* request) |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
616 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
617 if (request->method != OrthancPluginHttpMethod_Get) |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
618 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
619 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
620 return; |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
621 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
622 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
623 const std::string instanceId(request->groups[0]); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
624 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
625 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
626 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset(); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
627 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
628 std::string stl; |
| 33 | 629 if (STLToolbox::GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL || |
| 630 STLToolbox::GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage || | |
|
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
631 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
632 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
633 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
634 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
635 else |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
636 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
637 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
638 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
639 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
640 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
641 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
642 |
| 6 | 643 |
|
8
d1267c6c33e1
added route /stl/encode-nifti
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parents:
7
diff
changeset
|
644 void EncodeNifti(OrthancPluginRestOutput* output, |
|
d1267c6c33e1
added route /stl/encode-nifti
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diff
changeset
|
645 const char* url, |
|
d1267c6c33e1
added route /stl/encode-nifti
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parents:
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diff
changeset
|
646 const OrthancPluginHttpRequest* request) |
|
d1267c6c33e1
added route /stl/encode-nifti
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7
diff
changeset
|
647 { |
|
d1267c6c33e1
added route /stl/encode-nifti
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7
diff
changeset
|
648 static const char* const KEY_NIFTI = "Nifti"; |
|
d1267c6c33e1
added route /stl/encode-nifti
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parents:
7
diff
changeset
|
649 static const char* const KEY_RESOLUTION = "Resolution"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
650 static const char* const KEY_PARENT_STUDY = "ParentStudy"; |
|
d1267c6c33e1
added route /stl/encode-nifti
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7
diff
changeset
|
651 static const char* const KEY_SMOOTH = "Smooth"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
652 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
653 if (request->method != OrthancPluginHttpMethod_Post) |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
654 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
655 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST"); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
656 return; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
657 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
658 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
659 Json::Value body; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
660 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize)) |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
661 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
662 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
663 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
664 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
665 std::string mime, nifti; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
666 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI))) |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
667 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
668 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file"); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
669 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
670 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
671 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY); |
|
d1267c6c33e1
added route /stl/encode-nifti
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diff
changeset
|
672 const bool smooth = (body.isMember(KEY_SMOOTH) ? |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
673 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) : |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
674 true /* smooth by default */); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
675 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ? |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
676 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) : |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
677 256 /* default value */); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
678 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
679 vtkNew<vtkImageData> volume; |
| 32 | 680 VTKToolbox::LoadNifti(volume.Get(), nifti); |
|
8
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
681 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
682 std::string stl; |
| 32 | 683 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth)) |
|
8
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
684 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
685 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI"); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
686 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
687 else |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
688 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
689 const std::string title = "STL model generated from NIfTI"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
690 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
691 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
692 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
693 Json::Value answer; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
694 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
695 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
696 std::string s = answer.toStyledString(); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
697 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
698 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
699 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
700 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
701 |
|
46
9b2a2fcc9878
added option to disable Nexus support
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
702 #if ORTHANC_ENABLE_NEXUS == 1 |
|
9b2a2fcc9878
added option to disable Nexus support
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
703 |
|
45
967f947014ac
adding experimental support for nexus models
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704 void ServeNexusAssets(OrthancPluginRestOutput* output, |
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705 const char* url, |
|
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706 const OrthancPluginHttpRequest* request) |
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707 { |
|
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|
708 if (request->method != OrthancPluginHttpMethod_Get) |
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|
709 { |
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|
710 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
|
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|
711 return; |
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|
712 } |
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|
713 |
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714 const std::string file = request->groups[0]; |
|
64
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715 cache_.Answer(output, "nexus/" + file); |
|
45
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716 } |
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|
717 |
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|
718 |
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|
719 static Orthanc::MemoryStringCache nexusCache_; |
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720 |
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721 void ExtractNexusModel(OrthancPluginRestOutput* output, |
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722 const char* url, |
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723 const OrthancPluginHttpRequest* request) |
|
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724 { |
|
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|
725 OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); |
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726 |
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727 if (request->method != OrthancPluginHttpMethod_Get) |
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|
728 { |
|
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|
729 OrthancPluginSendMethodNotAllowed(context, output, "GET"); |
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|
730 return; |
|
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|
731 } |
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|
732 |
|
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|
733 const std::string instanceId = request->groups[0]; |
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|
734 |
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|
735 std::string range; |
|
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|
736 |
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737 for (uint32_t i = 0; i < request->headersCount; i++) |
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|
738 { |
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739 if (std::string(request->headersKeys[i]) == "range") |
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|
740 { |
|
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|
741 range = request->headersValues[i]; |
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742 } |
|
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|
743 } |
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|
744 |
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745 static const std::string BYTES = "bytes="; |
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|
746 |
|
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747 if (!boost::starts_with(range, BYTES)) |
|
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|
748 { |
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749 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
|
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|
750 return; |
|
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|
751 } |
|
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|
752 |
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|
753 std::vector<std::string> tokens; |
|
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754 Orthanc::Toolbox::TokenizeString(tokens, range.substr(BYTES.length()), '-'); |
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|
755 |
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|
756 uint64_t start, end; |
|
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|
757 |
|
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758 if (tokens.size() != 2 || |
|
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759 !Orthanc::SerializationToolbox::ParseUnsignedInteger64(start, tokens[0]) || |
|
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760 !Orthanc::SerializationToolbox::ParseUnsignedInteger64(end, tokens[1]) || |
|
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761 start < 0 || |
|
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762 start > end) |
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|
763 { |
|
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|
764 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
|
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|
765 return; |
|
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|
766 } |
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|
767 |
|
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|
768 uint64_t modelSize; |
|
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769 std::string part; |
|
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|
770 |
|
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|
771 #if 0 |
|
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|
772 { |
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|
773 // Use no cache |
|
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774 std::string model; |
|
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775 if (!OrthancPlugins::RestApiGetString(model, "/instances/" + instanceId + "/content/4205-1001", false)) |
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|
776 { |
|
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|
777 OrthancPluginSendHttpStatusCode(context, output, 404); |
|
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|
778 return; |
|
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|
779 } |
|
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changeset
|
780 |
|
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|
781 modelSize = model.size(); |
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|
782 |
|
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|
783 if (end >= modelSize) |
|
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|
784 { |
|
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|
785 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
|
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|
786 return; |
|
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|
787 } |
|
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|
788 |
|
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789 part = model.substr(start, end - start + 1); |
|
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790 } |
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|
791 #else |
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|
792 { |
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|
793 Orthanc::MemoryStringCache::Accessor accessor(nexusCache_); |
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|
794 |
|
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|
795 std::string model; |
|
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796 if (!accessor.Fetch(model, instanceId)) |
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|
797 { |
|
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|
798 if (OrthancPlugins::RestApiGetString(model, "/instances/" + instanceId + "/content/4205-1001", false)) |
|
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|
799 { |
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|
800 accessor.Add(instanceId, model); |
|
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|
801 } |
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|
802 else |
|
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|
803 { |
|
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|
804 OrthancPluginSendHttpStatusCode(context, output, 404); |
|
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|
805 return; |
|
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|
806 } |
|
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diff
changeset
|
807 } |
|
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changeset
|
808 |
|
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|
809 modelSize = model.size(); |
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|
810 |
|
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|
811 if (end >= modelSize) |
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|
812 { |
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changeset
|
813 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
|
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|
814 return; |
|
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|
815 } |
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|
816 |
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|
817 part = model.substr(start, end - start + 1); |
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|
818 } |
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|
819 #endif |
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|
820 |
|
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changeset
|
821 std::string s = ("bytes " + boost::lexical_cast<std::string>(start) + "-" + |
|
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|
822 boost::lexical_cast<std::string>(end) + "/" + |
|
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changeset
|
823 boost::lexical_cast<std::string>(modelSize)); |
|
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changeset
|
824 OrthancPluginSetHttpHeader(context, output, "Content-Range", s.c_str()); |
|
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changeset
|
825 |
|
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diff
changeset
|
826 s = boost::lexical_cast<std::string>(part.size()); |
|
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changeset
|
827 OrthancPluginSetHttpHeader(context, output, "Content-Length", s.c_str()); |
|
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diff
changeset
|
828 OrthancPluginSetHttpHeader(context, output, "Content-Type", "application/octet-stream"); |
|
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changeset
|
829 |
|
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changeset
|
830 OrthancPluginSendHttpStatus(context, output, 206 /* partial content */, part.c_str(), part.size()); |
|
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diff
changeset
|
831 } |
|
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diff
changeset
|
832 |
|
50
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diff
changeset
|
833 |
|
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changeset
|
834 void DicomizeNexusModel(OrthancPluginRestOutput* output, |
|
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changeset
|
835 const char* url, |
|
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changeset
|
836 const OrthancPluginHttpRequest* request) |
|
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changeset
|
837 { |
|
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changeset
|
838 static const char* KEY_CONTENT = "Content"; |
|
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|
839 static const char* KEY_PARENT = "Parent"; |
|
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|
840 static const char* KEY_TAGS = "Tags"; |
|
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changeset
|
841 static const char* KEY_PRIVATE_CREATOR = "PrivateCreator"; |
|
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changeset
|
842 |
|
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changeset
|
843 OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); |
|
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changeset
|
844 |
|
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changeset
|
845 if (request->method != OrthancPluginHttpMethod_Post) |
|
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changeset
|
846 { |
|
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changeset
|
847 OrthancPluginSendMethodNotAllowed(context, output, "POST"); |
|
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changeset
|
848 return; |
|
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|
849 } |
|
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diff
changeset
|
850 |
|
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diff
changeset
|
851 Json::Value body; |
|
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changeset
|
852 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize) || |
|
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changeset
|
853 body.type() != Json::objectValue || |
|
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changeset
|
854 !body.isMember(KEY_TAGS) || |
|
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changeset
|
855 body[KEY_TAGS].type() != Json::objectValue) |
|
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changeset
|
856 { |
|
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diff
changeset
|
857 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
|
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changeset
|
858 } |
|
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changeset
|
859 |
|
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diff
changeset
|
860 if (!body.isMember(KEY_CONTENT) || |
|
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changeset
|
861 body[KEY_CONTENT].type() != Json::stringValue) |
|
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changeset
|
862 { |
|
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|
863 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, |
|
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changeset
|
864 "POST body missing string field \"" + std::string(KEY_CONTENT) + "\""); |
|
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changeset
|
865 } |
|
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diff
changeset
|
866 |
|
55
41e3b79e7f4b
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diff
changeset
|
867 std::string decoded; |
|
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diff
changeset
|
868 Orthanc::Toolbox::DecodeBase64(decoded, body[KEY_CONTENT].asString()); |
|
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diff
changeset
|
869 |
|
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diff
changeset
|
870 if (decoded.size() < 4 || |
|
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diff
changeset
|
871 decoded[0] != 0x20 || |
|
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diff
changeset
|
872 decoded[1] != 0x73 || |
|
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diff
changeset
|
873 decoded[2] != 0x78 || |
|
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diff
changeset
|
874 decoded[3] != 0x4e) |
|
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diff
changeset
|
875 { |
|
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diff
changeset
|
876 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
|
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diff
changeset
|
877 "This is not a valid Nexus file, its magic header is incorrect"); |
|
41e3b79e7f4b
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diff
changeset
|
878 } |
|
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diff
changeset
|
879 |
|
50
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diff
changeset
|
880 Json::Value creationBody = Json::objectValue; |
|
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diff
changeset
|
881 |
|
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diff
changeset
|
882 creationBody[KEY_TAGS] = body[KEY_TAGS]; |
|
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changeset
|
883 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_MANUFACTURER.Format()] = ORTHANC_STL_MANUFACTURER; |
|
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diff
changeset
|
884 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()] = "1.2.840.10008.5.1.4.1.1.66"; |
|
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diff
changeset
|
885 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_MODALITY.Format()] = "OT"; |
|
bf4c4e4e7198
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changeset
|
886 creationBody[KEY_TAGS][DICOM_TAG_CREATOR_VERSION_UID.Format()] = GetCreatorVersionUid(ORTHANC_STL_VERSION); |
|
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changeset
|
887 creationBody[KEY_TAGS][Orthanc::DicomTag(ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_CREATOR_ELEMENT).Format()] = ORTHANC_STL_PRIVATE_CREATOR; |
| 51 | 888 creationBody[KEY_TAGS][Orthanc::DicomTag(ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_NEXUS_ELEMENT).Format()] = |
| 889 "data:application/octet-stream;base64," + body[KEY_CONTENT].asString(); | |
|
50
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changeset
|
890 creationBody[KEY_PRIVATE_CREATOR] = ORTHANC_STL_PRIVATE_CREATOR; |
|
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diff
changeset
|
891 |
|
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diff
changeset
|
892 if (body.isMember(KEY_PARENT)) |
|
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changeset
|
893 { |
|
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changeset
|
894 creationBody[KEY_PARENT] = body[KEY_PARENT]; |
|
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changeset
|
895 } |
|
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diff
changeset
|
896 |
|
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changeset
|
897 std::string bodyString; |
|
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changeset
|
898 Orthanc::Toolbox::WriteFastJson(bodyString, creationBody); |
|
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diff
changeset
|
899 |
|
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diff
changeset
|
900 std::string result; |
|
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diff
changeset
|
901 if (OrthancPlugins::RestApiPost(result, "/tools/create-dicom", |
|
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changeset
|
902 bodyString.empty() ? NULL : bodyString.c_str(), |
|
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changeset
|
903 bodyString.size(), false)) |
|
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diff
changeset
|
904 { |
|
bf4c4e4e7198
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diff
changeset
|
905 OrthancPluginAnswerBuffer(context, output, result.empty() ? NULL : result.c_str(), |
|
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changeset
|
906 result.size(), "application/json"); |
|
bf4c4e4e7198
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diff
changeset
|
907 } |
|
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added route /stl/create-nexus
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diff
changeset
|
908 else |
|
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diff
changeset
|
909 { |
|
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diff
changeset
|
910 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
|
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diff
changeset
|
911 } |
|
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diff
changeset
|
912 } |
|
bf4c4e4e7198
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diff
changeset
|
913 |
|
46
9b2a2fcc9878
added option to disable Nexus support
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
914 #endif |
|
9b2a2fcc9878
added option to disable Nexus support
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diff
changeset
|
915 |
|
45
967f947014ac
adding experimental support for nexus models
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40
diff
changeset
|
916 |
|
62
b798387b085c
added 3DHOP viewer version 4.3
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60
diff
changeset
|
917 #if ORTHANC_ENABLE_3DHOP == 1 |
|
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diff
changeset
|
918 |
|
70
a5c1be2ec26a
new configuration option: STL.3DHOP.CanvasStyle
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
919 // This is the default background style of 3DHOP |
|
a5c1be2ec26a
new configuration option: STL.3DHOP.CanvasStyle
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diff
changeset
|
920 static std::string canvasStyle3DHOP_ = "background-image: url(skins/backgrounds/light.jpg)"; |
|
a5c1be2ec26a
new configuration option: STL.3DHOP.CanvasStyle
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diff
changeset
|
921 |
|
62
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added 3DHOP viewer version 4.3
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changeset
|
922 void Serve3DHOPAssets(OrthancPluginRestOutput* output, |
|
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added 3DHOP viewer version 4.3
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changeset
|
923 const char* url, |
|
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diff
changeset
|
924 const OrthancPluginHttpRequest* request) |
|
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added 3DHOP viewer version 4.3
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diff
changeset
|
925 { |
|
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|
926 if (request->method != OrthancPluginHttpMethod_Get) |
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|
927 { |
|
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|
928 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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|
929 return; |
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930 } |
|
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|
931 |
|
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|
932 const std::string file = request->groups[0]; |
|
70
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|
933 const std::string resourceId = "3dhop/" + file; |
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934 |
|
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|
935 if (file == "3DHOP_all_tools.html") |
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|
936 { |
|
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|
937 std::string resource; |
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938 cache_.ReadResource(resource, resourceId); |
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939 |
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940 boost::replace_all(resource, "${{CANVAS_STYLE}}", canvasStyle3DHOP_); |
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941 |
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|
942 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, resource.c_str(), |
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943 resource.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Html)); |
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944 } |
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945 else |
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946 { |
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|
947 cache_.Answer(output, resourceId); |
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948 } |
|
62
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949 } |
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950 |
|
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951 #endif |
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952 |
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|
953 |
|
0
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954 extern "C" |
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955 { |
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956 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context) |
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957 { |
| 47 | 958 OrthancPlugins::SetGlobalContext(context, ORTHANC_PLUGIN_NAME); |
|
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959 |
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960 /* Check the version of the Orthanc core */ |
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961 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0) |
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962 { |
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963 char info[1024]; |
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964 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin", |
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965 OrthancPlugins::GetGlobalContext()->orthancVersion, |
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966 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, |
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967 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, |
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968 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); |
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969 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info); |
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970 return -1; |
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971 } |
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972 |
| 47 | 973 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 12, 4) |
| 974 Orthanc::Logging::InitializePluginContext(context, ORTHANC_PLUGIN_NAME); | |
| 975 #elif ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2) | |
|
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976 Orthanc::Logging::InitializePluginContext(context); |
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977 #else |
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978 Orthanc::Logging::Initialize(context); |
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979 #endif |
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980 |
|
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981 Orthanc::InitializeFramework("", false); |
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982 |
|
52
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983 const bool hasCreateDicomStl = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1); |
|
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984 |
|
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985 if (!hasCreateDicomStl) |
|
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986 { |
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|
987 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion) |
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988 << ") is insufficient to create DICOM STL, it should be above 1.12.1"; |
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989 } |
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|
990 |
|
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|
991 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc."); |
|
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992 |
|
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993 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true); |
|
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994 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true); |
|
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995 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true); |
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996 |
|
52
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997 if (hasCreateDicomStl) |
|
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998 { |
|
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999 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true); |
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|
1000 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true); |
|
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1001 } |
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|
1002 |
|
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1003 OrthancPlugins::OrthancConfiguration globalConfiguration; |
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1004 OrthancPlugins::OrthancConfiguration configuration; |
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1005 globalConfiguration.GetSection(configuration, "STL"); |
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|
1006 |
|
46
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1007 #if ORTHANC_ENABLE_NEXUS == 1 |
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1008 OrthancPlugins::OrthancConfiguration configuration3DHOP; |
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1009 configuration.GetSection(configuration3DHOP, "3DHOP"); |
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1010 |
|
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1011 const bool enableNexus = configuration.GetBooleanValue("EnableNexus", false); |
|
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1012 |
|
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|
1013 if (enableNexus) |
|
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1014 { |
|
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1015 LOG(INFO) << "Support for Nexus is enabled"; |
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1016 nexusCache_.SetMaximumSize(512 * 1024 * 1024); // Cache of 512MB for Nexus |
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1017 OrthancPlugins::RegisterRestCallback<ExtractNexusModel>("/instances/([0-9a-f-]+)/nexus", true); |
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|
1018 OrthancPlugins::RegisterRestCallback<ServeNexusAssets>("/stl/nexus/(.*)", true); |
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1019 |
|
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|
1020 #if ORTHANC_ENABLE_3DHOP == 1 |
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1021 OrthancPlugins::RegisterRestCallback<Serve3DHOPAssets>("/stl/3dhop/(.*)", true); |
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1022 |
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|
1023 /** |
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1024 * The 3DHOP viewer only supports ".nxs", ".nxz", and ".ply" extensions, |
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1025 * as can be seen in the "minimal/js/presenter.js" file. Furthermore, it |
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|
1026 * requires the extension to be part of the URL. |
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|
1027 **/ |
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1028 OrthancPlugins::RegisterRestCallback<ExtractNexusModel>("/stl/3dhop-instances/([0-9a-f-]+).nxz", true); |
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1029 #endif |
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|
1030 |
|
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|
1031 // New in release 1.3 |
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1032 canvasStyle3DHOP_ = configuration3DHOP.GetStringValue( |
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1033 "CanvasStyle", |
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1034 "background-image: url(skins/backgrounds/light.jpg)"); // This is the default background style of 3DHOP |
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1035 |
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1036 const bool hasCreateNexus_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 9, 4); |
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1037 |
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1038 if (hasCreateNexus_) |
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1039 { |
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1040 OrthancPlugins::RegisterRestCallback<DicomizeNexusModel>("/stl/create-nexus", true); |
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1041 |
|
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1042 if (OrthancPluginRegisterPrivateDictionaryTag( |
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1043 context, ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_CREATOR_ELEMENT, OrthancPluginValueRepresentation_LO, |
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1044 "PrivateCreator", 1, 1, ORTHANC_STL_PRIVATE_CREATOR) != OrthancPluginErrorCode_Success || |
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1045 OrthancPluginRegisterPrivateDictionaryTag( |
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1046 context, ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_NEXUS_ELEMENT, OrthancPluginValueRepresentation_OB, |
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1047 "NexusData", 1, 1, ORTHANC_STL_PRIVATE_CREATOR) != OrthancPluginErrorCode_Success) |
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1048 { |
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1049 LOG(ERROR) << "Cannot register the private DICOM tags for handling Nexus"; |
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1050 } |
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1051 } |
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1052 else |
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1053 { |
|
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1054 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion) |
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1055 << ") is insufficient to create DICOM-ize Nexus models, it should be above 1.9.4"; |
|
50
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1056 } |
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1057 } |
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1058 else |
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1059 { |
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1060 LOG(INFO) << "Support for Nexus is disabled"; |
|
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1061 } |
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1062 #else |
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1063 const bool enableNexus = false; |
|
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1064 #endif |
|
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1065 |
|
2
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1066 // Extend the default Orthanc Explorer with custom JavaScript for STL |
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1067 std::string explorer; |
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1068 |
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1069 { |
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1070 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER); |
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1071 |
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1072 std::map<std::string, std::string> dictionary; |
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1073 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl ? "true" : "false"); |
| 40 | 1074 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("EnableNIfTI", false) ? "true" : "false"); |
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1075 dictionary["IS_NEXUS_ENABLED"] = (enableNexus ? "true" : "false"); |
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1076 dictionary["IS_3DHOP_ENABLED"] = ((ORTHANC_ENABLE_3DHOP == 1) ? "true" : "false"); |
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1077 FillOrthancExplorerCreatorVersionUid(dictionary); |
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1078 |
|
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1079 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary); |
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1080 |
|
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1081 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer); |
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1082 } |
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1083 |
|
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1084 return 0; |
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1085 } |
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1086 |
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1087 |
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1088 ORTHANC_PLUGINS_API void OrthancPluginFinalize() |
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1089 { |
|
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1090 Orthanc::FinalizeFramework(); |
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1091 } |
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1092 |
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1093 |
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1094 ORTHANC_PLUGINS_API const char* OrthancPluginGetName() |
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1095 { |
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1096 return ORTHANC_PLUGIN_NAME; |
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1097 } |
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1098 |
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1099 |
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1100 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() |
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1101 { |
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1102 return ORTHANC_STL_VERSION; |
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1103 } |
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1104 } |