orthanc-stl: Sources/Plugin.cpp annotate

annotate Sources/Plugin.cpp @ 2:2bdb9acb7dcf

added STL viewer button at instance level too

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Tue, 18 Jul 2023 09:41:31 +0200
parents	0f03a8a0bd6f
children	0fb06c6a6c87

rev	line source
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	2 * SPDX-FileCopyrightText: 2023 Sebastien Jodogne, UCLouvain, Belgium
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	3 * SPDX-License-Identifier: GPL-3.0-or-later
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	4 */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	5
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * STL plugin for Orthanc
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	8 * Copyright (C) 2023 Sebastien Jodogne, UCLouvain, Belgium
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	9 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	10 * This program is free software: you can redistribute it and/or
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 * modify it under the terms of the GNU General Public License as
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 * published by the Free Software Foundation, either version 3 of the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * License, or (at your option) any later version.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	14 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	15 * This program is distributed in the hope that it will be useful, but
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	16 * WITHOUT ANY WARRANTY; without even the implied warranty of
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	18 * General Public License for more details.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	19 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20 * You should have received a copy of the GNU General Public License
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	23
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	24
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	25 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	26
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	27 #include <ChunkedBuffer.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	28 #include <DicomParsing/ParsedDicomFile.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	29 #include <Images/ImageProcessing.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	30 #include <Logging.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	31 #include <OrthancFramework.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	32 #include <SerializationToolbox.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	33 #include <SystemToolbox.h>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	34
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	35 #include <EmbeddedResources.h>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	36
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	37 #include <vtkImageData.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	38 #include <vtkImageResize.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	39 #include <vtkMarchingCubes.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	40 #include <vtkNew.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	41 #include <vtkPolyData.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	42 #include <vtkTriangle.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	43 #include <vtkSmoothPolyDataFilter.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	44 #include <vtkPolyDataNormals.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	45 #include <vtkImageConstantPad.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	46
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	47 #include <boost/thread/shared_mutex.hpp>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	48
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	49 // Forward declaration
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	50 void ReadStaticAsset(std::string& target,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	51 const std::string& path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	52
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	53
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	54 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	55 * As the Three.js static assets are gzipped by the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	56 * "EmbedStaticAssets.py" script, we use a cache to maintain the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	57 * uncompressed assets in order to avoid multiple gzip decodings.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	58 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	59 class ResourcesCache : public boost::noncopyable
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	60 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	61 private:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	62 typedef std::map<std::string, std::string*> Content;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	63
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	64 boost::shared_mutex mutex_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	65 Content content_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	66
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	67 public:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	68 ~ResourcesCache()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	69 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	70 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	71 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	72 assert(it->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	73 delete it->second;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	74 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	75 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	76
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	77 void Answer(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	78 const std::string& path)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	79 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	80 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	81
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	82 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	83 // Check whether the cache already contains the resource
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	84 boost::shared_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	85
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	86 Content::const_iterator found = content_.find(path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	87
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	88 if (found != content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	89 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	90 assert(found->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	91 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	92 return;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	93 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	94 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	95
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	96 // This resource has not been cached yet
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	97
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	98 std::unique_ptr<std::string> item(new std::string);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	99 ReadStaticAsset(*item, path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	100 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	101
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	102 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	103 // Store the resource into the cache
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	104 boost::unique_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	105
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	106 if (content_.find(path) == content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	107 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	108 content_[path] = item.release();
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	109 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	110 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	111 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	112 };
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	113
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	114
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	115 static ResourcesCache cache_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	116 static bool hasCreateDicomStl_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	117
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	118 void ServeFile(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	119 const char* url,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	120 const OrthancPluginHttpRequest* request)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	121 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	122 std::string file = request->groups[0];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	123
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	124 if (file == "viewer.html")
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	125 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	126 std::string s;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	127 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_HTML);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	128 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Html));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	129 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	130 else if (file == "viewer.js")
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	131 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	132 std::string s;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	133 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_JS);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	134 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_JavaScript));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	135 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	136 else
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	137 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	138 cache_.Answer(output, file);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	139 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	140 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	141
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	142
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	143
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	144
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	145 #include <dcmtk/dcmdata/dcdeftag.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	146 #include <dcmtk/dcmdata/dcfilefo.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	147 #include <dcmtk/dcmdata/dcitem.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	148 #include <dcmtk/dcmdata/dcsequen.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	149
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	150 class Extent2D : public boost::noncopyable
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	151 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	152 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	153 bool isEmpty_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	154 double x1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	155 double y1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	156 double x2_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	157 double y2_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	158
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	159 void CheckNotEmpty() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	160 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	161 if (isEmpty_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	162 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	163 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	164 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	165 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	166
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	167 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	168 Extent2D() :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	169 isEmpty_(true),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	170 x1_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	171 y1_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	172 x2_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	173 y2_(0)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	174 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	175 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	176
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	177 bool IsEmpty() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	178 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	179 return isEmpty_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	180 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	181
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	182 double GetMinX() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	183 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	184 CheckNotEmpty();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	185 return x1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	186 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	187
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	188 double GetMaxX() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	189 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	190 CheckNotEmpty();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	191 return x2_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	192 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	193
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	194 double GetMinY() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	195 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	196 CheckNotEmpty();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	197 return y1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	198 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	199
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	200 double GetMaxY() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	201 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	202 CheckNotEmpty();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	203 return y2_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	204 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	205
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	206 double GetWidth() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	207 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	208 CheckNotEmpty();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	209 return x2_ - x1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	210 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	211
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	212 double GetHeight() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	213 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	214 CheckNotEmpty();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	215 return y2_ - y1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	216 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	217
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	218 void Add(double x,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	219 double y)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	220 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	221 if (isEmpty_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	222 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	223 x1_ = x2_ = x;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	224 y1_ = y2_ = y;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	225 isEmpty_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	226 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	227 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	228 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	229 x1_ = std::min(x1_, x);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	230 x2_ = std::max(x2_, x);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	231 y1_ = std::min(y1_, y);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	232 y2_ = std::max(y2_, y);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	233 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	234 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	235 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	236
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	237 static void GetStringValue(std::string& value,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	238 DcmItem& item,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	239 const DcmTagKey& key)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	240 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	241 const char* s = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	242 if (!item.findAndGetString(key, s).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	243 s == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	244 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	245 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	246 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	247 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	248 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	249 value.assign(s);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	250 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	251 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	252
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	253
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	254 static void ListStructuresNames(std::set<std::string>& target,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	255 Orthanc::ParsedDicomFile& source)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	256 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	257 target.clear();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	258
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	259 DcmSequenceOfItems* sequence = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	260 if (!source.GetDcmtkObject().getDataset()->findAndGetSequence(DCM_StructureSetROISequence, sequence).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	261 sequence == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	262 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	263 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	264 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	265
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	266 for (unsigned long i = 0; i < sequence->card(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	267 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	268 DcmItem* item = sequence->getItem(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	269 if (item == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	270 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	271 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	272 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	273 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	274 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	275 std::string value;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	276 GetStringValue(value, *item, DCM_ROIName);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	277 target.insert(value);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	278 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	279 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	280 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	281
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	282
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	283 static bool IsNear(double a,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	284 double b)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	285 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	286 return std::abs(a - b) < 10.0 * std::numeric_limits<double>::epsilon();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	287 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	288
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	289
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	290 class Vector3D
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	291 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	292 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	293 double x_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	294 double y_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	295 double z_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	296
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	297 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	298 Vector3D() :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	299 x_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	300 y_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	301 z_(0)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	302 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	303 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	304
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	305 Vector3D(double x,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	306 double y,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	307 double z) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	308 x_(x),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	309 y_(y),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	310 z_(z)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	311 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	312 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	313
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	314 Vector3D(const Vector3D& from,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	315 const Vector3D& to) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	316 x_(to.x_ - from.x_),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	317 y_(to.y_ - from.y_),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	318 z_(to.z_ - from.z_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	319 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	320 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	321
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	322 double GetX() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	323 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	324 return x_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	325 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	326
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	327 double GetY() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	328 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	329 return y_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	330 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	331
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	332 double GetZ() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	333 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	334 return z_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	335 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	336
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	337 double ComputeNorm() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	338 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	339 return sqrt(x_ * x_ + y_ * y_ + z_ * z_);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	340 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	341
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	342 void Normalize()
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	343 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	344 double norm = ComputeNorm();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	345 if (!IsNear(norm, 0))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	346 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	347 x_ /= norm;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	348 y_ /= norm;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	349 z_ /= norm;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	350 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	351 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	352
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	353 static Vector3D CrossProduct(const Vector3D& u,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	354 const Vector3D& v)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	355 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	356 return Vector3D(u.GetY() * v.GetZ() - u.GetZ() * v.GetY(),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	357 u.GetZ() * v.GetX() - u.GetX() * v.GetZ(),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	358 u.GetX() * v.GetY() - u.GetY() * v.GetX());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	359 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	360
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	361 static double DotProduct(const Vector3D& a,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	362 const Vector3D& b)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	363 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	364 return a.GetX() * b.GetX() + a.GetY() * b.GetY() + a.GetZ() * b.GetZ();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	365 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	366 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	367
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	368
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	369
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	370 static bool MyParseDouble(double& value,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	371 const std::string& s)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	372 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	373 #if 1
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	374 char* end = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	375 value = strtod(s.c_str(), &end);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	376 return (end == s.c_str() + s.size());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	377 #else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	378 return Orthanc::SerializationToolbox::ParseDouble(value, s);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	379 #endif
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	380 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	381
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	382
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	383 class StructurePolygon : public boost::noncopyable
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	384 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	385 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	386 std::string roiName_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	387 std::string referencedSopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	388 uint8_t red_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	389 uint8_t green_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	390 uint8_t blue_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	391 std::vector<Vector3D> points_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	392
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	393 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	394 StructurePolygon(Orthanc::ParsedDicomFile& dicom,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	395 unsigned long roiIndex,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	396 unsigned long contourIndex)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	397 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	398 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	399
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	400 DcmItem* structure = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	401 DcmItem* roi = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	402 DcmItem* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	403 DcmSequenceOfItems* referenced = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	404
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	405 if (!dataset.findAndGetSequenceItem(DCM_StructureSetROISequence, structure, roiIndex).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	406 structure == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	407 !dataset.findAndGetSequenceItem(DCM_ROIContourSequence, roi, roiIndex).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	408 roi == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	409 !roi->findAndGetSequenceItem(DCM_ContourSequence, contour, contourIndex).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	410 contour == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	411 !contour->findAndGetSequence(DCM_ContourImageSequence, referenced).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	412 referenced == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	413 referenced->card() != 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	414 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	415 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	416 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	417
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	418 GetStringValue(roiName_, *structure, DCM_ROIName);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	419 GetStringValue(referencedSopInstanceUid_, *referenced->getItem(0), DCM_ReferencedSOPInstanceUID);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	420
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	421 std::string s;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	422 GetStringValue(s, *contour, DCM_ContourGeometricType);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	423 if (s != "CLOSED_PLANAR")
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	424 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	425 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	426 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	427
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	428 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	429 std::string color;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	430 GetStringValue(color, *roi, DCM_ROIDisplayColor);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	431
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	432 std::vector<std::string> tokens;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	433 Orthanc::Toolbox::TokenizeString(tokens, color, '\\');
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	434
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	435 uint32_t r, g, b;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	436 if (tokens.size() != 3 \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	437 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(r, tokens[0]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	438 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(g, tokens[1]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	439 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(b, tokens[2]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	440 r > 255 \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	441 g > 255 \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	442 b > 255)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	443 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	444 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	445 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	446
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	447 red_ = r;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	448 green_ = g;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	449 blue_ = b;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	450 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	451
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	452 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	453 GetStringValue(s, *contour, DCM_ContourData);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	454
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	455 std::vector<std::string> tokens;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	456 Orthanc::Toolbox::TokenizeString(tokens, s, '\\');
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	457
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	458 GetStringValue(s, *contour, DCM_NumberOfContourPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	459
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	460 uint32_t countPoints;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	461 if (!Orthanc::SerializationToolbox::ParseUnsignedInteger32(countPoints, s) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	462 tokens.size() != 3 * countPoints)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	463 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	464 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	465 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	466
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	467 points_.reserve(countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	468
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	469 for (size_t i = 0; i < tokens.size(); i += 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	470 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	471 double x, y, z;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	472 if (!MyParseDouble(x, tokens[i]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	473 !MyParseDouble(y, tokens[i + 1]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	474 !MyParseDouble(z, tokens[i + 2]))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	475 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	476 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	477 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	478
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	479 points_.push_back(Vector3D(x, y, z));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	480 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	481
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	482 assert(points_.size() == countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	483 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	484 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	485
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	486 const std::string& GetRoiName() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	487 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	488 return roiName_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	489 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	490
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	491 const std::string& GetReferencedSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	492 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	493 return referencedSopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	494 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	495
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	496 size_t GetPointsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	497 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	498 return points_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	499 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	500
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	501 const Vector3D& GetPoint(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	502 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	503 if (i >= points_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	504 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	505 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	506 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	507 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	508 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	509 return points_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	510 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	511 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	512
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	513 bool IsCoplanar(Vector3D& normal) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	514 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	515 if (points_.size() < 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	516 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	517 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	518 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	519
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	520 bool hasNormal = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	521
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	522 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	523 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	524 normal = Vector3D::CrossProduct(Vector3D(points_[1], points_[0]),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	525 Vector3D(points_[2], points_[0]));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	526 if (!IsNear(normal.ComputeNorm(), 0))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	527 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	528 normal.Normalize();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	529 hasNormal = true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	530 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	531 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	532
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	533 if (!hasNormal)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	534 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	535 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	536 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	537
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	538 double a = Vector3D::DotProduct(points_[0], normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	539
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	540 for (size_t i = 1; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	541 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	542 double b = Vector3D::DotProduct(points_[i], normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	543 if (!IsNear(a, b))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	544 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	545 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	546 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	547 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	548
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	549 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	550 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	551
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	552 void Add(Extent2D& extent,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	553 const Vector3D& axisX,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	554 const Vector3D& axisY) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	555 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	556 assert(IsNear(1, axisX.ComputeNorm()));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	557 assert(IsNear(1, axisY.ComputeNorm()));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	558
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	559 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	560 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	561 extent.Add(Vector3D::DotProduct(axisX, points_[i]),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	562 Vector3D::DotProduct(axisY, points_[i]));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	563 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	564 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	565 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	566
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	567
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	568
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	569 struct IsNearPredicate
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	570 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	571 bool operator() (const double& a,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	572 const double& b)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	573 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	574 return IsNear(a, b);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	575 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	576 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	577
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	578 static void RemoveDuplicateValues(std::vector<double>& v)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	579 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	580 IsNearPredicate predicate;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	581 std::vector<double>::iterator last = std::unique(v.begin(), v.end(), predicate);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	582 v.erase(last, v.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	583 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	584
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	585
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	586 class StructureSet : public boost::noncopyable
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	587 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	588 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	589 std::vector<StructurePolygon*> polygons_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	590 bool hasGeometry_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	591 Vector3D slicesNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	592 double slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	593 double minProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	594 double maxProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	595 std::string patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	596 std::string studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	597 std::string seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	598 std::string sopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	599
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	600 void ComputeGeometry()
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	601 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	602 std::list<double> positionsList;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	603 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	604
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	605 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	606 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	607 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	608
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	609 Vector3D n;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	610 if (polygons_[i]->IsCoplanar(n))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	611 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	612 const Vector3D& point = polygons_[i]->GetPoint(0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	613 double z = Vector3D::DotProduct(point, n);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	614
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	615 if (!hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	616 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	617 hasGeometry_ = true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	618 slicesNormal_ = n;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	619 minProjectionAlongNormal_ = z;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	620 maxProjectionAlongNormal_ = z;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	621 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	622 else if (!IsNear(std::abs(Vector3D::DotProduct(n, slicesNormal_)), 1))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	623 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	624 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	625
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	626 // RT-STRUCT with non-parallel slices
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	627 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	628 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	629 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	630 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	631 minProjectionAlongNormal_ = std::min(minProjectionAlongNormal_, z);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	632 maxProjectionAlongNormal_ = std::max(maxProjectionAlongNormal_, z);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	633 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	634
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	635 positionsList.push_back(Vector3D::DotProduct(n, point));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	636 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	637 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	638
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	639 if (hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	640 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	641 std::vector<double> positions(positionsList.begin(), positionsList.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	642 assert(!positions.empty());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	643
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	644 std::sort(positions.begin(), positions.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	645 RemoveDuplicateValues(positions);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	646 assert(!positions.empty());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	647
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	648 if (positions.size() == 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	649 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	650 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	651 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	652 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	653
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	654 std::vector<double> offsets;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	655 offsets.resize(positions.size() - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	656
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	657 for (size_t i = 0; i < offsets.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	658 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	659 offsets[i] = positions[i + 1] - positions[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	660 assert(offsets[i] > 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	661 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	662
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	663 std::sort(offsets.begin(), offsets.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	664 RemoveDuplicateValues(offsets);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	665
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	666 slicesSpacing_ = offsets[0];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	667
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	668 for (size_t i = 1; i < offsets.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	669 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	670 double d = offsets[i] / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	671 if (!IsNear(d, round(d)))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	672 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	673 // Irregular spacing between the slices
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	674 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	675 break;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	676 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	677 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	678 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	679 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	680
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	681 void CheckHasGeometry() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	682 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	683 if (!hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	684 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	685 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	686 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	687 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	688
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	689 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	690 explicit StructureSet(Orthanc::ParsedDicomFile& dicom) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	691 hasGeometry_(false),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	692 slicesSpacing_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	693 minProjectionAlongNormal_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	694 maxProjectionAlongNormal_(0)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	695 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	696 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	697 GetStringValue(patientId_, dataset, DCM_PatientID);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	698 GetStringValue(studyInstanceUid_, dataset, DCM_StudyInstanceUID);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	699 GetStringValue(seriesInstanceUid_, dataset, DCM_SeriesInstanceUID);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	700 GetStringValue(sopInstanceUid_, dataset, DCM_SOPInstanceUID);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	701
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	702 DcmSequenceOfItems* rois = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	703 if (!dataset.findAndGetSequence(DCM_ROIContourSequence, rois).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	704 rois == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	705 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	706 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	707 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	708
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	709 std::vector<DcmSequenceOfItems*> contours(rois->card());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	710 size_t countPolygons = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	711
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	712 for (unsigned long i = 0; i < rois->card(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	713 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	714 DcmSequenceOfItems* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	715 if (!rois->getItem(i)->findAndGetSequence(DCM_ContourSequence, contour).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	716 contour == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	717 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	718 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	719 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	720 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	721 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	722 contours[i] = contour;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	723 countPolygons += contour->card();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	724 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	725 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	726
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	727 polygons_.resize(countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	728
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	729 size_t pos = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	730 for (unsigned long i = 0; i < contours.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	731 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	732 for (unsigned long j = 0; j < contours[i]->card(); j++, pos++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	733 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	734 polygons_[pos] = new StructurePolygon(dicom, i, j);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	735 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	736 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	737
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	738 assert(pos == countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	739
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	740 ComputeGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	741 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	742
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	743 ~StructureSet()
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	744 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	745 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	746 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	747 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	748 delete polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	749 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	750 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	751
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	752 const std::string& GetPatient() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	753 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	754 return patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	755 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	756
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	757 const std::string& GetStudyInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	758 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	759 return studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	760 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	761
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	762 const std::string& GetSeriesInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	763 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	764 return seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	765 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	766
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	767 const std::string& GetSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	768 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	769 return sopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	770 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	771
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	772 std::string HashStudy() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	773 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	774 std::string s;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	775 Orthanc::Toolbox::ComputeSHA1(s, patientId_ + "\|" + studyInstanceUid_);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	776 return s;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	777 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	778
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	779 size_t GetPolygonsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	780 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	781 return polygons_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	782 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	783
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	784 const StructurePolygon& GetPolygon(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	785 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	786 if (i >= polygons_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	787 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	788 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	789 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	790 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	791 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	792 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	793 return *polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	794 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	795 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	796
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	797 bool HasGeometry() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	798 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	799 return hasGeometry_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	800 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	801
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	802 const Vector3D& GetSlicesNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	803 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	804 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	805 return slicesNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	806 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	807
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	808 double GetSlicesSpacing() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	809 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	810 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	811 return slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	812 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	813
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	814 double GetMinProjectionAlongNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	815 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	816 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	817 return minProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	818 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	819
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	820 double GetMaxProjectionAlongNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	821 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	822 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	823 return maxProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	824 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	825
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	826 double ProjectAlongNormal(const StructurePolygon& polygon) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	827 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	828 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	829 return Vector3D::DotProduct(slicesNormal_, polygon.GetPoint(0));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	830 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	831
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	832 size_t GetSlicesCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	833 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	834 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	835 double c = (maxProjectionAlongNormal_ - minProjectionAlongNormal_) / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	836 assert(c >= 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	837
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	838 if (!IsNear(c, round(c)))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	839 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	840 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	841 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	842 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	843 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	844 return static_cast<size_t>(round(c)) + 1;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	845 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	846 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	847
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	848 bool LookupSliceIndex(size_t& slice,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	849 const StructurePolygon& polygon) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	850 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	851 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	852
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	853 double z = ProjectAlongNormal(polygon);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	854
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	855 if (z < minProjectionAlongNormal_ \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	856 z > maxProjectionAlongNormal_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	857 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	858 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	859 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	860 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	861 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	862 double c = (z - minProjectionAlongNormal_) / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	863
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	864 if (IsNear(c, round(c)))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	865 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	866 slice = static_cast<size_t>(round(c));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	867 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	868 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	869 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	870 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	871 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	872 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	873 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	874 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	875
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	876 bool LookupReferencedSopInstanceUid(std::string& sopInstanceUid) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	877 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	878 if (HasGeometry())
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	879 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	880 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	881 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	882 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	883
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	884 Vector3D n;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	885 if (polygons_[i]->IsCoplanar(n) &&
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	886 Vector3D::DotProduct(n, slicesNormal_))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	887 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	888 sopInstanceUid = polygons_[i]->GetReferencedSopInstanceUid();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	889 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	890 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	891 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	892 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	893
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	894 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	895 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	896 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	897
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	898
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	899
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	900
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	901 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	902 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	903 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	904 Orthanc::ImageAccessor& target_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	905
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	906 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	907 XorFiller(Orthanc::ImageAccessor& target) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	908 target_(target)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	909 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	910 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	911
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	912 virtual void Fill(int y,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	913 int x1,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	914 int x2) ORTHANC_OVERRIDE
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	915 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	916 assert(x1 <= x2);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	917
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	918 if (y >= 0 &&
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	919 y < static_cast<int>(target_.GetHeight()))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	920 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	921 x1 = std::max(x1, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	922 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	923
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	924 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	925
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	926 for (int i = x1; i <= x2; i++, p++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	927 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	928 p = (p ^ 0xff);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	929 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	930 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	931 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	932 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	933
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	934
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	935 static void EncodeSTL(std::string& target /* out */,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	936 vtkPolyData& mesh /* in */)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	937 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	938 // TODO - Conversion to little endian on big endian
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	939
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	940 Orthanc::ChunkedBuffer buffer;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	941
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	942 uint8_t header[80];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	943 memset(header, 0, sizeof(header));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	944 buffer.AddChunk(header, sizeof(header));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	945
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	946 uint32_t n = mesh.GetNumberOfCells();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	947 buffer.AddChunk(&n, sizeof(n));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	948
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	949 for (vtkIdType i = 0; i < mesh.GetNumberOfCells(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	950 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	951 vtkCell* cell = mesh.GetCell(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	952 vtkTriangle* triangle = dynamic_cast<vtkTriangle*>(cell);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	953
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	954 double p0[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	955 double p1[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	956 double p2[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	957 triangle->GetPoints()->GetPoint(0, p0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	958 triangle->GetPoints()->GetPoint(1, p1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	959 triangle->GetPoints()->GetPoint(2, p2);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	960
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	961 double normal[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	962 vtkTriangle::ComputeNormal(p0, p1, p2, normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	963
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	964 float d[4 * 3] = {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	965 static_cast<float>(normal[0]), static_cast<float>(normal[1]), static_cast<float>(normal[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	966 static_cast<float>(p0[0]), static_cast<float>(p0[1]), static_cast<float>(p0[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	967 static_cast<float>(p1[0]), static_cast<float>(p1[1]), static_cast<float>(p1[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	968 static_cast<float>(p2[0]), static_cast<float>(p2[1]), static_cast<float>(p2[2]) };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	969 buffer.AddChunk(d, sizeof(d));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	970
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	971 uint16_t a = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	972 buffer.AddChunk(&a, sizeof(a));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	973 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	974
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	975 buffer.Flatten(target);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	976 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	977
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	978
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	979 bool EncodeStructureSetMesh(std::string& stl,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	980 const StructureSet& structureSet,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	981 const std::set<std::string>& roiNames,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	982 unsigned int resolution,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	983 bool smooth)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	984 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	985 if (!structureSet.HasGeometry())
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	986 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	987 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	988 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	989
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	990 if (resolution < 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	991 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	992 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	993 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	994
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	995 if (!IsNear(1, structureSet.GetSlicesNormal().ComputeNorm()))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	996 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	997 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	998 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	999
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1000 // TODO - Axes could be retrieved from the referenced CT volume
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1001 Vector3D axisX(1, 0, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1002 Vector3D axisY = Vector3D::CrossProduct(structureSet.GetSlicesNormal(), axisX);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1003
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1004 if (!IsNear(1, axisX.ComputeNorm()) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1005 !IsNear(1, axisY.ComputeNorm()))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1006 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1007 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1008 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1009
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1010 Extent2D extent;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1011 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1012 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1013 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1014 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1015
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1016 const int depth = structureSet.GetSlicesCount();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1017
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1018 vtkNew<vtkImageData> volume;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1019 volume->SetDimensions(resolution, resolution, depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1020 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1021
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1022 assert(sizeof(unsigned char) == 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1023 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1024
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1025 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1026 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1027 const StructurePolygon& polygon = structureSet.GetPolygon(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1028 if (roiNames.find(polygon.GetRoiName()) == roiNames.end())
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1029 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1030 // This polygon doesn't correspond to a ROI of interest
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1031 continue;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1032 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1033
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1034 size_t j;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1035 if (!structureSet.LookupSliceIndex(j, polygon))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1036 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1037 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1038 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1039
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1040 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1041 points.reserve(polygon.GetPointsCount());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1042 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1043 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1044 const Vector3D& point = polygon.GetPoint(j);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1045 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1046 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1047 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1048 static_cast<int32_t>(std::floor(y))));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1049 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1050
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1051 Orthanc::ImageAccessor slice;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1052 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1053 reinterpret_cast<uint8_t>(volume->GetScalarPointer()) + j resolution * resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1054
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1055 XorFiller filler(slice);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1056 Orthanc::ImageProcessing::FillPolygon(filler, points);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1057 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1058
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1059 vtkNew<vtkImageResize> resize;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1060 resize->SetOutputDimensions(resolution, resolution, resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1061 resize->SetInputData(volume.Get());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1062 resize->Update();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1063
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1064 resize->GetOutput()->SetSpacing(
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1065 extent.GetWidth() / static_cast<double>(resolution),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1066 extent.GetHeight() / static_cast<double>(resolution),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1067 (structureSet.GetMaxProjectionAlongNormal() - structureSet.GetMinProjectionAlongNormal()) / static_cast<double>(resolution));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1068
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1069 // TODO
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1070 // resize->GetOutput()->SetOrigin()
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1071
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1072 vtkNew<vtkImageConstantPad> padding;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1073 padding->SetConstant(0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1074 padding->SetOutputNumberOfScalarComponents(1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1075 padding->SetOutputWholeExtent(-1, resolution, -1, resolution, -1, resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1076 padding->SetInputData(resize->GetOutput());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1077 padding->Update();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1078
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1079 vtkNew<vtkMarchingCubes> surface;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1080 surface->SetInputData(padding->GetOutput());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1081 surface->ComputeNormalsOn();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1082 surface->SetValue(0, 128 /isoValue/);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1083 surface->Update();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1084
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1085 if (smooth)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1086 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1087 vtkNew<vtkSmoothPolyDataFilter> smoothFilter;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1088 // Apply volume smoothing
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1089 // https://examples.vtk.org/site/Cxx/PolyData/SmoothPolyDataFilter/
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1090 smoothFilter->SetInputConnection(surface->GetOutputPort());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1091 smoothFilter->SetNumberOfIterations(15);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1092 smoothFilter->SetRelaxationFactor(0.1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1093 smoothFilter->FeatureEdgeSmoothingOff();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1094 smoothFilter->BoundarySmoothingOn();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1095 smoothFilter->Update();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1096
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1097 vtkNew<vtkPolyDataNormals> normalGenerator;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1098 normalGenerator->SetInputConnection(smoothFilter->GetOutputPort());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1099 normalGenerator->ComputePointNormalsOn();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1100 normalGenerator->ComputeCellNormalsOn();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1101 normalGenerator->Update();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1102
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1103 EncodeSTL(stl, *normalGenerator->GetOutput());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1104 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1105 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1106 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1107 EncodeSTL(stl, *surface->GetOutput());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1108 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1109
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1110 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1111 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1112
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1113
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1114 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1115 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1116 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1117 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1118 const std::string instanceId(request->groups[0]);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1119
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1120 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1121 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1122 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1123 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1124 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1125
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1126 std::string dicom;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1127 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1128 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1129 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1130 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1131 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1132 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1133 Orthanc::ParsedDicomFile parsed(dicom);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1134
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1135 std::set<std::string> names;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1136 ListStructuresNames(names, parsed);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1137
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1138 Json::Value answer = Json::arrayValue;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1139
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1140 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1141 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1142 answer.append(*it);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1143 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1144
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1145 std::string s = answer.toStyledString();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1146 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1147 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1148 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1149
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1150
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1151 void Encode(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1152 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1153 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1154 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1155 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1156 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1157 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1158 static const char* const KEY_SMOOTH = "Smooth";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1159 static const char* const KEY_TAGS = "Tags";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1160
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1161 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1162 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1163 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1164 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1165 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1166
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1167 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1168 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1169 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1170 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1171 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1172
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1173 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1174 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1175 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1176 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1177 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1178 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1179 256 /* default value */);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1180
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1181 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1182 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1183
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1184 std::string dicom;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1185 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1186 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1187 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1188 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1189 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1190 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1191 Orthanc::ParsedDicomFile parsed(dicom);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1192 StructureSet structureSet(parsed);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1193
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1194 std::string stl;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1195 if (!EncodeStructureSetMesh(stl, structureSet, roiNames, resolution, smooth))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1196 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1197 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1198 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1199 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1200 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1201 std::string content;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1202 Orthanc::Toolbox::EncodeDataUriScheme(content, "model/stl", stl);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1203
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1204 Json::Value create;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1205 create["Content"] = content;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1206 create["Parent"] = structureSet.HashStudy();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1207
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1208 if (body.isMember(KEY_TAGS))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1209 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1210 create[KEY_TAGS] = body[KEY_TAGS];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1211 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1212 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1213 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1214 std::string description;
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1215
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1216 if (parsed.GetTagValue(description, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1217 {
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1218 description += ": ";
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1219 }
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1220 else
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1221 {
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1222 description.clear();
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1223 }
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1224
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1225 bool first = true;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1226 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1227 {
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1228 if (first)
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1229 {
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1230 first = false;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1231 }
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1232 else
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1233 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1234 description += ", ";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1235 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1236
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1237 description += *it;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1238 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1239
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1240 create[KEY_TAGS] = Json::objectValue;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1241 create[KEY_TAGS]["SeriesDescription"] = description;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1242 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1243
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1244 Json::Value answer;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1245 if (OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1246 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1247 std::string s = answer.toStyledString();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1248 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1249 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1250 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1251 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1252 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1253 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1254 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1255 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1256 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1257
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1258
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1259 extern "C"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1260 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1261 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1262 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1263 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1264
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1265 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1266 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1267 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1268 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1269 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1270 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1271 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1272 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1273 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1274 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1275 return -1;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1276 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1277
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1278 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1279 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1280 #else
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1281 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1282 #endif
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1283
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1284 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1285
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1286 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1287
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1288 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1289 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1290 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1291 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1292 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1293
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1294 OrthancPluginSetDescription(context, "STL plugin for Orthanc.");
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1295
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1296 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1297 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1298
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1299 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1300 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1301 OrthancPlugins::RegisterRestCallback<Encode>("/stl/encode", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1302 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1303
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1304 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1305 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1306
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1307 {
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1308 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1309
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1310 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1311 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1312 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1313
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1314 OrthancPluginExtendOrthancExplorer(OrthancPlugins::GetGlobalContext(), explorer.c_str());
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1315 }
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1316
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1317 return 0;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1318 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1319
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1320
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1321 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1322 {
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1323 Orthanc::FinalizeFramework();
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1324 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1325
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1326
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1327 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1328 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1329 return "stl";
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1330 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1331
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1332
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1333 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1334 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1335 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1336 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1337 }

Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 2:2bdb9acb7dcf