orthanc-stl: Sources/Plugin.cpp annotate

annotate Sources/Plugin.cpp @ 32:976da5476810

reorganization

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Thu, 04 Apr 2024 18:35:54 +0200
parents	ab231760799d
children	2460b376d3f7

rev	line source
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
24 dd0cd39e6259 update year to 2024 Sebastien Jodogne <s.jodogne@gmail.com> parents: 8 diff changeset	2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	3 * SPDX-License-Identifier: GPL-3.0-or-later
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	4 */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	5
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * STL plugin for Orthanc
24 dd0cd39e6259 update year to 2024 Sebastien Jodogne <s.jodogne@gmail.com> parents: 8 diff changeset	8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	9 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	10 * This program is free software: you can redistribute it and/or
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 * modify it under the terms of the GNU General Public License as
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 * published by the Free Software Foundation, either version 3 of the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * License, or (at your option) any later version.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	14 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	15 * This program is distributed in the hope that it will be useful, but
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	16 * WITHOUT ANY WARRANTY; without even the implied warranty of
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	18 * General Public License for more details.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	19 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20 * You should have received a copy of the GNU General Public License
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	23
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	24
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	25 #include "VTKToolbox.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	26 #include "Vector3D.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	27 #include "Toolbox.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	28 #include "Extent2D.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	29
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	30 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	31
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	32 #include <EmbeddedResources.h>
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	33
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	34 #include <DicomFormat/DicomInstanceHasher.h>
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	35 #include <DicomParsing/FromDcmtkBridge.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	36 #include <DicomParsing/ParsedDicomFile.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	37 #include <Images/ImageProcessing.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	38 #include <Logging.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	39 #include <OrthancFramework.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	40 #include <SerializationToolbox.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	41 #include <SystemToolbox.h>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	42
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	43 #include <boost/thread/shared_mutex.hpp>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	44
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	45 #define ORTHANC_PLUGIN_NAME "stl"
5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	46
6 c02d12eb34d4 added LoadNifti() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4 diff changeset	47
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	48 // Forward declaration
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	49 void ReadStaticAsset(std::string& target,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	50 const std::string& path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	51
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	52
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	53 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	54 * As the Three.js static assets are gzipped by the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	55 * "EmbedStaticAssets.py" script, we use a cache to maintain the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	56 * uncompressed assets in order to avoid multiple gzip decodings.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	57 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	58 class ResourcesCache : public boost::noncopyable
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	59 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	60 private:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	61 typedef std::map<std::string, std::string*> Content;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	62
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	63 boost::shared_mutex mutex_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	64 Content content_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	65
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	66 public:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	67 ~ResourcesCache()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	68 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	69 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	70 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	71 assert(it->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	72 delete it->second;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	73 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	74 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	75
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	76 void Answer(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	77 const std::string& path)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	78 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	79 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	80
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	81 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	82 // Check whether the cache already contains the resource
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	83 boost::shared_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	84
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	85 Content::const_iterator found = content_.find(path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	86
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	87 if (found != content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	88 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	89 assert(found->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	90 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	91 return;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	92 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	93 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	94
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	95 // This resource has not been cached yet
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	96
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	97 std::unique_ptr<std::string> item(new std::string);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	98 ReadStaticAsset(*item, path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	99 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	100
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	101 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	102 // Store the resource into the cache
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	103 boost::unique_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	104
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	105 if (content_.find(path) == content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	106 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	107 content_[path] = item.release();
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	108 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	109 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	110 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	111 };
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	112
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	113
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	114 static ResourcesCache cache_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	115 static bool hasCreateDicomStl_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	116
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	117 void ServeFile(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	118 const char* url,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	119 const OrthancPluginHttpRequest* request)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	120 {
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	121 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	122 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	123 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	124 return;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	125 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	126
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	127 std::string file = request->groups[0];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	128
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	129 if (file == "viewer.html")
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	130 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	131 std::string s;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	132 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_HTML);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	133 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Html));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	134 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	135 else if (file == "viewer.js")
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	136 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	137 std::string s;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	138 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_JS);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	139 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_JavaScript));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	140 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	141 else
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	142 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	143 cache_.Answer(output, file);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	144 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	145 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	146
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	147
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	148
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	149
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	150 #include <dcmtk/dcmdata/dcdeftag.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	151 #include <dcmtk/dcmdata/dcfilefo.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	152 #include <dcmtk/dcmdata/dcitem.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	153 #include <dcmtk/dcmdata/dcsequen.h>
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	154 #include <dcmtk/dcmdata/dcuid.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	155
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	156
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	157 static std::string GetStringValue(DcmItem& item,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	158 const DcmTagKey& key)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	159 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	160 const char* s = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	161 if (!item.findAndGetString(key, s).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	162 s == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	163 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	164 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	165 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	166 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	167 {
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	168 return Orthanc::Toolbox::StripSpaces(s);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	169 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	170 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	171
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	172
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	173 static void ListStructuresNames(std::set<std::string>& target,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	174 Orthanc::ParsedDicomFile& source)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	175 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	176 target.clear();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	177
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	178 DcmSequenceOfItems* sequence = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	179 if (!source.GetDcmtkObject().getDataset()->findAndGetSequence(DCM_StructureSetROISequence, sequence).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	180 sequence == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	181 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	182 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	183 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	184
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	185 for (unsigned long i = 0; i < sequence->card(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	186 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	187 DcmItem* item = sequence->getItem(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	188 if (item == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	189 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	190 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	191 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	192 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	193 {
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	194 target.insert(GetStringValue(*item, DCM_ROIName));
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	195 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	196 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	197 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	198
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	199
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	200 class StructurePolygon : public boost::noncopyable
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	201 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	202 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	203 std::string roiName_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	204 std::string referencedSopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	205 uint8_t red_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	206 uint8_t green_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	207 uint8_t blue_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	208 std::vector<Vector3D> points_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	209
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	210 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	211 StructurePolygon(Orthanc::ParsedDicomFile& dicom,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	212 unsigned long roiIndex,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	213 unsigned long contourIndex)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	214 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	215 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	216
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	217 DcmItem* structure = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	218 DcmItem* roi = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	219 DcmItem* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	220 DcmSequenceOfItems* referenced = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	221
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	222 if (!dataset.findAndGetSequenceItem(DCM_StructureSetROISequence, structure, roiIndex).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	223 structure == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	224 !dataset.findAndGetSequenceItem(DCM_ROIContourSequence, roi, roiIndex).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	225 roi == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	226 !roi->findAndGetSequenceItem(DCM_ContourSequence, contour, contourIndex).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	227 contour == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	228 !contour->findAndGetSequence(DCM_ContourImageSequence, referenced).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	229 referenced == NULL \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	230 referenced->card() != 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	231 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	232 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	233 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	234
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	235 roiName_ = GetStringValue(*structure, DCM_ROIName);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	236 referencedSopInstanceUid_ = GetStringValue(*referenced->getItem(0), DCM_ReferencedSOPInstanceUID);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	237
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	238 if (GetStringValue(*contour, DCM_ContourGeometricType) != "CLOSED_PLANAR")
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	239 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	240 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	241 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	242
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	243 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	244 std::vector<std::string> tokens;
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	245 Orthanc::Toolbox::TokenizeString(tokens, GetStringValue(*roi, DCM_ROIDisplayColor), '\\');
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	246
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	247 uint32_t r, g, b;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	248 if (tokens.size() != 3 \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	249 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(r, tokens[0]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	250 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(g, tokens[1]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	251 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(b, tokens[2]) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	252 r > 255 \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	253 g > 255 \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	254 b > 255)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	255 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	256 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	257 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	258
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	259 red_ = r;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	260 green_ = g;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	261 blue_ = b;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	262 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	263
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	264 {
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	265 std::vector<std::string> tokens;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	266 Orthanc::Toolbox::TokenizeString(tokens, GetStringValue(*contour, DCM_ContourData), '\\');
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	267
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	268 const std::string s = GetStringValue(*contour, DCM_NumberOfContourPoints);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	269
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	270 uint32_t countPoints;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	271 if (!Orthanc::SerializationToolbox::ParseUnsignedInteger32(countPoints, s) \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	272 tokens.size() != 3 * countPoints)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	273 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	274 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	275 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	276
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	277 points_.reserve(countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	278
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	279 for (size_t i = 0; i < tokens.size(); i += 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	280 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	281 double x, y, z;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	282 if (!Toolbox::MyParseDouble(x, tokens[i]) \|\|
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	283 !Toolbox::MyParseDouble(y, tokens[i + 1]) \|\|
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	284 !Toolbox::MyParseDouble(z, tokens[i + 2]))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	285 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	286 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	287 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	288
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	289 points_.push_back(Vector3D(x, y, z));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	290 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	291
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	292 assert(points_.size() == countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	293 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	294 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	295
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	296 const std::string& GetRoiName() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	297 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	298 return roiName_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	299 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	300
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	301 const std::string& GetReferencedSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	302 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	303 return referencedSopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	304 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	305
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	306 size_t GetPointsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	307 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	308 return points_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	309 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	310
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	311 const Vector3D& GetPoint(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	312 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	313 if (i >= points_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	314 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	315 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	316 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	317 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	318 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	319 return points_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	320 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	321 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	322
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	323 bool IsCoplanar(Vector3D& normal) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	324 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	325 if (points_.size() < 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	326 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	327 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	328 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	329
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	330 bool hasNormal = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	331
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	332 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	333 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	334 normal = Vector3D::CrossProduct(Vector3D(points_[1], points_[0]),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	335 Vector3D(points_[2], points_[0]));
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	336 if (!Toolbox::IsNear(normal.ComputeNorm(), 0))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	337 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	338 normal.Normalize();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	339 hasNormal = true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	340 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	341 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	342
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	343 if (!hasNormal)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	344 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	345 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	346 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	347
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	348 double a = Vector3D::DotProduct(points_[0], normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	349
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	350 for (size_t i = 1; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	351 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	352 double b = Vector3D::DotProduct(points_[i], normal);
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	353 if (!Toolbox::IsNear(a, b))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	354 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	355 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	356 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	357 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	358
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	359 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	360 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	361
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	362 void Add(Extent2D& extent,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	363 const Vector3D& axisX,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	364 const Vector3D& axisY) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	365 {
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	366 assert(Toolbox::IsNear(1, axisX.ComputeNorm()));
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	367 assert(Toolbox::IsNear(1, axisY.ComputeNorm()));
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	368
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	369 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	370 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	371 extent.Add(Vector3D::DotProduct(axisX, points_[i]),
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	372 Vector3D::DotProduct(axisY, points_[i]));
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	373 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	374 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	375 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	376
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	377
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	378
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	379 class StructureSet : public boost::noncopyable
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	380 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	381 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	382 std::vector<StructurePolygon*> polygons_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	383 std::string patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	384 std::string studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	385 std::string seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	386 std::string sopInstanceUid_;
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	387 bool hasFrameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	388 std::string frameOfReferenceUid_;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	389
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	390 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	391 explicit StructureSet(Orthanc::ParsedDicomFile& dicom) :
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	392 hasFrameOfReferenceUid_(false)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	393 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	394 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	395 patientId_ = GetStringValue(dataset, DCM_PatientID);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	396 studyInstanceUid_ = GetStringValue(dataset, DCM_StudyInstanceUID);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	397 seriesInstanceUid_ = GetStringValue(dataset, DCM_SeriesInstanceUID);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	398 sopInstanceUid_ = GetStringValue(dataset, DCM_SOPInstanceUID);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	399
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	400 DcmSequenceOfItems* frame = NULL;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	401 if (!dataset.findAndGetSequence(DCM_ReferencedFrameOfReferenceSequence, frame).good() \|\|
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	402 frame == NULL)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	403 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	404 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	405 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	406
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	407 if (frame->card() == 1)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	408 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	409 const char* v = NULL;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	410 if (frame->getItem(0)->findAndGetString(DCM_FrameOfReferenceUID, v).good() &&
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	411 v != NULL)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	412 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	413 hasFrameOfReferenceUid_ = true;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	414 frameOfReferenceUid_.assign(v);
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	415 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	416 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	417
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	418 DcmSequenceOfItems* rois = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	419 if (!dataset.findAndGetSequence(DCM_ROIContourSequence, rois).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	420 rois == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	421 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	422 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	423 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	424
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	425 std::vector<DcmSequenceOfItems*> contours(rois->card());
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	426 size_t countPolygons = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	427
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	428 for (unsigned long i = 0; i < rois->card(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	429 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	430 DcmSequenceOfItems* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	431 if (!rois->getItem(i)->findAndGetSequence(DCM_ContourSequence, contour).good() \|\|
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	432 contour == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	433 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	434 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	435 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	436 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	437 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	438 contours[i] = contour;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	439 countPolygons += contour->card();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	440 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	441 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	442
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	443 polygons_.resize(countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	444
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	445 size_t pos = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	446 for (unsigned long i = 0; i < contours.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	447 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	448 for (unsigned long j = 0; j < contours[i]->card(); j++, pos++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	449 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	450 polygons_[pos] = new StructurePolygon(dicom, i, j);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	451 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	452 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	453
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	454 assert(pos == countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	455 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	456
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	457 ~StructureSet()
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	458 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	459 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	460 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	461 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	462 delete polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	463 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	464 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	465
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	466 const std::string& GetPatientId() const
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	467 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	468 return patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	469 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	470
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	471 const std::string& GetStudyInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	472 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	473 return studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	474 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	475
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	476 const std::string& GetSeriesInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	477 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	478 return seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	479 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	480
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	481 const std::string& GetSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	482 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	483 return sopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	484 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	485
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	486 std::string HashStudy() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	487 {
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	488 Orthanc::DicomInstanceHasher hasher(patientId_, studyInstanceUid_, seriesInstanceUid_, sopInstanceUid_);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	489 return hasher.HashStudy();
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	490 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	491
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	492 size_t GetPolygonsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	493 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	494 return polygons_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	495 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	496
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	497 const StructurePolygon& GetPolygon(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	498 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	499 if (i >= polygons_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	500 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	501 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	502 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	503 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	504 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	505 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	506 return *polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	507 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	508 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	509
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	510 bool HasFrameOfReferenceUid() const
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	511 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	512 return hasFrameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	513 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	514
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	515 const std::string& GetFrameOfReferenceUid() const
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	516 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	517 if (hasFrameOfReferenceUid_)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	518 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	519 return frameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	520 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	521 else
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	522 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	523 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	524 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	525 }
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	526 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	527
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	528
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	529 class StructureSetGeometry : public boost::noncopyable
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	530 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	531 private:
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	532 bool strict_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	533 Vector3D slicesNormal_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	534 double slicesSpacing_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	535 double minProjectionAlongNormal_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	536 double maxProjectionAlongNormal_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	537 size_t slicesCount_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	538
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	539 bool LookupProjectionIndex(size_t& index,
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	540 double z) const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	541 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	542 if (slicesCount_ == 0)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	543 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	544 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	545 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	546
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	547 if (z < minProjectionAlongNormal_ \|\|
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	548 z > maxProjectionAlongNormal_)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	549 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	550 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	551 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	552
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	553 assert(slicesSpacing_ > 0 &&
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	554 minProjectionAlongNormal_ < maxProjectionAlongNormal_);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	555
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	556 double d = (z - minProjectionAlongNormal_) / slicesSpacing_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	557
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	558 if (Toolbox::IsNear(d, round(d)))
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	559 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	560 if (d < 0.0 \|\|
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	561 d > static_cast<double>(slicesCount_) - 1.0)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	562 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	563 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	564 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	565 else
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	566 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	567 index = static_cast<size_t>(round(d));
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	568 return true;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	569 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	570 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	571 else
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	572 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	573 return false;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	574 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	575 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	576
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	577 public:
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	578 StructureSetGeometry(const StructureSet& structures,
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	579 bool strict) :
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	580 strict_(strict)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	581 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	582 bool isValid = false;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	583
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	584 std::vector<double> projections;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	585 projections.reserve(structures.GetPolygonsCount());
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	586
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	587 for (size_t i = 0; i < structures.GetPolygonsCount(); i++)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	588 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	589 Vector3D normal;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	590 if (structures.GetPolygon(i).IsCoplanar(normal))
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	591 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	592 // Initialize the normal of the whole volume, if need be
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	593 if (!isValid)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	594 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	595 isValid = true;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	596 slicesNormal_ = normal;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	597 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	598
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	599 if (Vector3D::AreParallel(normal, slicesNormal_))
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	600 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	601 // This is a valid slice (it is parallel to the normal)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	602 const Vector3D& point = structures.GetPolygon(i).GetPoint(0);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	603 projections.push_back(Vector3D::DotProduct(point, slicesNormal_));
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	604 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	605 else
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	606 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	607 // RT-STRUCT with non-parallel slices
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	608 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	609 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	610 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	611 else
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	612 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	613 // Ignore slices that are not coplanar
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	614 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	615 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	616
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	617 if (projections.empty())
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	618 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	619 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented,
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	620 "Structure set without a valid geometry");
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	621 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	622
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	623 // Only keep unique projections
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	624
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	625 std::sort(projections.begin(), projections.end());
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	626 Toolbox::RemoveDuplicateValues(projections);
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	627 assert(!projections.empty());
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	628
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	629 if (projections.size() == 1)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	630 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	631 // Volume with one single slice
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	632 minProjectionAlongNormal_ = projections[0];
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	633 maxProjectionAlongNormal_ = projections[0];
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	634 slicesSpacing_ = 1; // Arbitrary value
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	635 slicesCount_ = 1;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	636 return;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	637 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	638
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	639
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	640 // Compute the most probable spacing between the slices
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	641
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	642 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	643 std::vector<double> spacings;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	644 spacings.resize(projections.size() - 1);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	645
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	646 for (size_t i = 0; i < spacings.size(); i++)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	647 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	648 spacings[i] = projections[i + 1] - projections[i];
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	649 assert(spacings[i] > 0);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	650 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	651
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	652 std::sort(spacings.begin(), spacings.end());
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	653 Toolbox::RemoveDuplicateValues(spacings);
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	654
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	655 if (spacings.empty())
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	656 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	657 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	658 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	659
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	660 slicesSpacing_ = spacings[spacings.size() / 10]; // Take the 90% percentile of smallest spacings
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	661 assert(slicesSpacing_ > 0);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	662 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	663
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	664
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	665 // Find the projection along the normal with the largest support
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	666
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	667 bool first = true;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	668 size_t bestSupport;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	669 double bestProjection;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	670
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	671 std::list<size_t> candidates;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	672 for (size_t i = 0; i < projections.size(); i++)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	673 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	674 candidates.push_back(i);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	675 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	676
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	677 while (!candidates.empty())
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	678 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	679 std::list<size_t> next;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	680
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	681 size_t countSupport = 0;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	682
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	683 std::list<size_t>::const_iterator it = candidates.begin();
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	684 size_t reference = *it;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	685 it++;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	686
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	687 while (it != candidates.end())
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	688 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	689 double d = (projections[*it] - projections[reference]) / slicesSpacing_;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	690 if (Toolbox::IsNear(d, round(d)))
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	691 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	692 countSupport ++;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	693 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	694 else
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	695 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	696 next.push_back(*it);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	697 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	698
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	699 it++;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	700 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	701
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	702 if (first \|\|
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	703 countSupport > bestSupport)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	704 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	705 first = false;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	706 bestSupport = countSupport;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	707 bestProjection = projections[reference];
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	708 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	709
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	710 if (strict &&
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	711 !next.empty())
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	712 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	713 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat,
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	714 "Structure set with multiple support, which is not allowed in Strict mode");
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	715 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	716
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	717 candidates.swap(next);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	718 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	719
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	720
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	721 // Compute the range of the projections
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	722
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	723 minProjectionAlongNormal_ = bestProjection;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	724 maxProjectionAlongNormal_ = bestProjection;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	725
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	726 for (size_t i = 0; i < projections.size(); i++)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	727 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	728 double d = (projections[i] - bestProjection) / slicesSpacing_;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	729 if (Toolbox::IsNear(d, round(d)))
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	730 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	731 minProjectionAlongNormal_ = std::min(minProjectionAlongNormal_, projections[i]);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	732 maxProjectionAlongNormal_ = std::max(maxProjectionAlongNormal_, projections[i]);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	733 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	734 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	735
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	736 double d = (maxProjectionAlongNormal_ - minProjectionAlongNormal_) / slicesSpacing_;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	737 if (Toolbox::IsNear(d, round(d)))
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	738 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	739 slicesCount_ = static_cast<size_t>(round(d)) + 1;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	740 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	741 else
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	742 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	743 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	744 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	745
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	746
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	747 // Sanity check
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	748
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	749 size_t a, b;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	750 if (!LookupProjectionIndex(a, minProjectionAlongNormal_) \|\|
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	751 !LookupProjectionIndex(b, maxProjectionAlongNormal_) \|\|
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	752 a != 0 \|\|
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	753 b + 1 != slicesCount_)
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	754 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	755 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	756 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	757 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	758
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	759 const Vector3D& GetSlicesNormal() const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	760 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	761 return slicesNormal_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	762 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	763
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	764 double GetSlicesSpacing() const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	765 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	766 return slicesSpacing_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	767 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	768
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	769 double GetMinProjectionAlongNormal() const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	770 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	771 return minProjectionAlongNormal_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	772 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	773
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	774 double GetMaxProjectionAlongNormal() const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	775 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	776 return maxProjectionAlongNormal_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	777 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	778
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	779 bool ProjectAlongNormal(double& z,
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	780 const StructurePolygon& polygon) const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	781 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	782 Vector3D normal;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	783 if (polygon.IsCoplanar(normal) &&
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	784 Vector3D::AreParallel(normal, slicesNormal_))
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	785 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	786 z = Vector3D::DotProduct(polygon.GetPoint(0), slicesNormal_);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	787 return true;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	788 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	789 else
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	790 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	791 return false;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	792 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	793 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	794
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	795 size_t GetSlicesCount() const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	796 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	797 return slicesCount_;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	798 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	799
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	800 bool LookupSliceIndex(size_t& slice,
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	801 const StructurePolygon& polygon) const
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	802 {
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	803 double z;
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	804 return (ProjectAlongNormal(z, polygon) &&
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	805 LookupProjectionIndex(slice, z));
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	806 }
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	807 };
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	808
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	809
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	810
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	811
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	812 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	813 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	814 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	815 Orthanc::ImageAccessor& target_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	816
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	817 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	818 XorFiller(Orthanc::ImageAccessor& target) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	819 target_(target)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	820 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	821 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	822
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	823 virtual void Fill(int y,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	824 int x1,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	825 int x2) ORTHANC_OVERRIDE
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	826 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	827 assert(x1 <= x2);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	828
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	829 if (y >= 0 &&
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	830 y < static_cast<int>(target_.GetHeight()))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	831 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	832 x1 = std::max(x1, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	833 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	834
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	835 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	836
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	837 for (int i = x1; i <= x2; i++, p++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	838 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	839 p = (p ^ 0xff);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	840 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	841 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	842 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	843 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	844
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	845
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	846 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	847 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	848 std::string dicom;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	849
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	850 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	851 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	852 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	853 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	854 else
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	855 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	856 return new Orthanc::ParsedDicomFile(dicom);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	857 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	858 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	859
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	860
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	861 static void GetReferencedVolumeAxes(Vector3D& axisX,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	862 Vector3D& axisY,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	863 const StructureSet& structureSet)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	864 {
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	865 // This is a rough guess for the X/Y axes
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	866 axisX = Vector3D(1, 0, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	867 axisY = Vector3D(0, 1, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	868
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	869 // Look for one instance from the referenced volume
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	870 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid();
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	871
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	872 Json::Value response;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	873 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	874 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	875 if (response.type() != Json::arrayValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	876 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	877 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	878 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	879
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	880 bool first = true;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	881
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	882 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	883 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	884 if (response[i].type() != Json::objectValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	885 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	886 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	887 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	888
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	889 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance")
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	890 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	891 if (first)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	892 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	893 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID");
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	894 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId));
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	895
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	896 std::string imageOrientation;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	897 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	898 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	899 std::vector<std::string> items;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	900 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\');
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	901
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	902 double x1, x2, x3, y1, y2, y3;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	903
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	904 if (items.size() == 6 &&
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	905 Toolbox::MyParseDouble(x1, items[0]) &&
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	906 Toolbox::MyParseDouble(x2, items[1]) &&
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	907 Toolbox::MyParseDouble(x3, items[2]) &&
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	908 Toolbox::MyParseDouble(y1, items[3]) &&
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	909 Toolbox::MyParseDouble(y2, items[4]) &&
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	910 Toolbox::MyParseDouble(y3, items[5]))
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	911 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	912 axisX = Vector3D(x1, x2, x3);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	913 axisY = Vector3D(y1, y2, y3);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	914 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	915 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	916 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	917 else
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	918 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	919 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	920 "Multiple instances with the same SOP Instance UID");
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	921 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	922 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	923 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	924 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	925 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	926
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	927
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	928 static bool EncodeStructureSetMesh(std::string& stl,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	929 const StructureSet& structureSet,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	930 const StructureSetGeometry& geometry,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	931 const std::set<std::string>& roiNames,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	932 unsigned int resolution,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	933 bool smooth)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	934 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	935 if (resolution < 1 \|\|
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	936 structureSet.GetPolygonsCount() < 1)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	937 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	938 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	939 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	940
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	941 if (!Toolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm()))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	942 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	943 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	944 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	945
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	946 Vector3D axisX, axisY;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	947 GetReferencedVolumeAxes(axisX, axisY, structureSet);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	948
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	949 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	950
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	951 if (!Toolbox::IsNear(1, axisX.ComputeNorm()) \|\|
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	952 !Toolbox::IsNear(1, axisY.ComputeNorm()) \|\|
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	953 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal()))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	954 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	955 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	956 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	957
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	958 Extent2D extent;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	959 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	960 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	961 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	962 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	963
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	964 const int depth = geometry.GetSlicesCount();
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	965
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	966 vtkNew<vtkImageData> volume;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	967 volume->SetDimensions(resolution, resolution, depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	968 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	969
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	970 assert(sizeof(unsigned char) == 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	971 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	972
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	973 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	974 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	975 const double pixelSpacingZ = geometry.GetSlicesSpacing();
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	976
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	977 bool first = true;
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	978
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	979 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	980 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	981 const StructurePolygon& polygon = structureSet.GetPolygon(i);
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	982 if (roiNames.find(polygon.GetRoiName()) != roiNames.end())
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	983 {
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	984 // This polygon corresponds to a ROI of interest
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	985
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	986 size_t z;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	987 if (geometry.LookupSliceIndex(z, polygon))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	988 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	989 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	990 points.reserve(polygon.GetPointsCount());
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	991
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	992 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	993 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	994 const Vector3D& point = polygon.GetPoint(j);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	995 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	996 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	997 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	998 static_cast<int32_t>(std::floor(y))));
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	999
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1000 if (first)
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1001 {
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1002 first = false;
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1003 volume->SetOrigin(point.GetX() - x * pixelSpacingX,
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1004 point.GetY() - y * pixelSpacingY,
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1005 point.GetZ() - z * pixelSpacingZ);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1006 }
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1007 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1008
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1009 Orthanc::ImageAccessor slice;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1010 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1011 reinterpret_cast<uint8_t>(volume->GetScalarPointer()) + z resolution * resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1012
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1013 XorFiller filler(slice);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1014 Orthanc::ImageProcessing::FillPolygon(filler, points);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1015 }
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1016 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1017 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1018
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	1019 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1020
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	1021 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1022 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1023
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1024
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1025 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1026 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1027 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1028 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1029 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1030 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1031 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1032 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1033 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1034
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1035 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1036
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1037 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1038
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1039 std::set<std::string> names;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1040 ListStructuresNames(names, *dicom);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1041
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1042 Json::Value answer = Json::arrayValue;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1043
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1044 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1045 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1046 answer.append(*it);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1047 }
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1048
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1049 std::string s = answer.toStyledString();
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1050 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1051 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1052
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1053
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1054 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1055 const Orthanc::DicomTag& tag,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1056 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1057 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1058 if (!target.isMember(tag.Format()))
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1059 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1060 target[tag.Format()] = value;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1061 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1062 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1063
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1064
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1065 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1066 const DcmTagKey& tag,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1067 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1068 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1069 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value);
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1070 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1071
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1072
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1073 static void CallCreateDicom(Json::Value& answer,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1074 const std::string& stl,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1075 const Json::Value& body,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1076 const std::string& parentStudy,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1077 const std::string& defaultSeriesDescription,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1078 const std::string& defaultFrameOfReferenceUid,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1079 const std::string& defaultTitle)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1080 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1081 static const char* const KEY_TAGS = "Tags";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1082
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1083 Json::Value normalized = Json::objectValue;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1084
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1085 if (body.isMember(KEY_TAGS))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1086 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1087 const Json::Value& tags = body[KEY_TAGS];
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1088
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1089 if (tags.type() != Json::objectValue)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1090 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1091 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1092 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1093
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1094 std::vector<std::string> keys = tags.getMemberNames();
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1095 for (size_t i = 0; i < keys.size(); i++)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1096 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1097 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1098 normalized[tag.Format()] = tags[keys[i]];
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1099 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1100 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1101
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1102 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1103 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1104 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1105 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1106
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1107 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1108 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1109 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1110
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1111 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1112 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1113 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1114 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1115 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1116 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, "");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1117 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1118 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, "");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1119
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1120 std::string date, time;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1121 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1122 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1123
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1124 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(),
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1125 DCM_MeasurementUnitsCodeSequence.getElement());
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1126
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1127 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format()))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1128 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1129 Json::Value item;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1130 item["CodeValue"] = "mm";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1131 item["CodingSchemeDesignator"] = "UCUM";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1132 item["CodeMeaning"] = defaultTitle;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1133
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1134 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1135 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1136
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1137 std::string content;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1138 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1139
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1140 Json::Value create;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1141 create["Content"] = content;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1142 create["Parent"] = parentStudy;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1143 create["Tags"] = normalized;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1144
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1145 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1146 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1147 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1148 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1149 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1150
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1151
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1152 void EncodeStructureSet(OrthancPluginRestOutput* output,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1153 const char* url,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1154 const OrthancPluginHttpRequest* request)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1155 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1156 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1157 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1158 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1159 static const char* const KEY_SMOOTH = "Smooth";
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	1160 static const char* const KEY_STRICT = "Strict";
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1161
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1162 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1163 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1164 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1165 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1166 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1167
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1168 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1169 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1170 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1171 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1172 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1173
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1174 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1175 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1176 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1177 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1178 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1179 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1180 256 /* default value */);
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	1181 const bool strict = (body.isMember(KEY_STRICT) ?
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	1182 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) :
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	1183 true /* strict by default */);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1184
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1185 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1186 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1187
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1188 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1189
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1190 StructureSet structureSet(*dicom);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1191
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	1192 StructureSetGeometry geometry(structureSet, strict);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	1193
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1194 std::string stl;
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	1195 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1196 {
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1197 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT");
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1198 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1199 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1200 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1201 std::string seriesDescription;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1202
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1203 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1204 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1205 seriesDescription += ": ";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1206 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1207 else
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1208 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1209 seriesDescription.clear();
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1210 }
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1211
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1212 bool first = true;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1213 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1214 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1215 if (first)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1216 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1217 first = false;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1218 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1219 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1220 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1221 seriesDescription += ", ";
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1222 }
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1223
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1224 seriesDescription += *it;
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1225 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1226
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1227 std::string frameOfReferenceUid;
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1228 if (structureSet.HasFrameOfReferenceUid())
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1229 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1230 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid();
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1231 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1232 else
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1233 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1234 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1235 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1236
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1237 Json::Value answer;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1238 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1239 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT");
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	1240
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1241 std::string s = answer.toStyledString();
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	1242 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1243 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1244 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1245
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1246
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1247 void ExtractStl(OrthancPluginRestOutput* output,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1248 const char* url,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1249 const OrthancPluginHttpRequest* request)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1250 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1251 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1252 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1253 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1254 return;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1255 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1256
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1257 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1258
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1259 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1260 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset();
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1261
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1262 std::string stl;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1263 if (GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL \|\|
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	1264 GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage \|\|
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1265 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT))
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1266 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1267 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1268 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1269 else
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1270 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1271 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1272 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1273 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1274 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1275
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1276
6 c02d12eb34d4 added LoadNifti() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4 diff changeset	1277
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1278 void EncodeNifti(OrthancPluginRestOutput* output,
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1279 const char* url,
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1280 const OrthancPluginHttpRequest* request)
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1281 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1282 static const char* const KEY_NIFTI = "Nifti";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1283 static const char* const KEY_RESOLUTION = "Resolution";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1284 static const char* const KEY_PARENT_STUDY = "ParentStudy";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1285 static const char* const KEY_SMOOTH = "Smooth";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1286
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1287 if (request->method != OrthancPluginHttpMethod_Post)
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1288 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1289 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1290 return;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1291 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1292
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1293 Json::Value body;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1294 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1295 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1296 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1297 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1298
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1299 std::string mime, nifti;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1300 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI)))
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1301 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1302 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1303 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1304
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1305 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1306 const bool smooth = (body.isMember(KEY_SMOOTH) ?
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1307 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1308 true /* smooth by default */);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1309 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1310 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1311 256 /* default value */);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1312
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1313 vtkNew<vtkImageData> volume;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	1314 VTKToolbox::LoadNifti(volume.Get(), nifti);
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1315
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1316 std::string stl;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	1317 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth))
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1318 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1319 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1320 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1321 else
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1322 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1323 const std::string title = "STL model generated from NIfTI";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1324
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1325 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1326
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1327 Json::Value answer;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1328 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1329
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1330 std::string s = answer.toStyledString();
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1331 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1332 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1333 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1334
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1335
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1336 extern "C"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1337 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1338 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1339 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1340 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1341
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1342 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1343 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1344 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1345 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1346 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1347 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1348 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1349 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1350 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1351 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1352 return -1;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1353 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1354
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1355 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1356 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1357 #else
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1358 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1359 #endif
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1360
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1361 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1362
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1363 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1364
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1365 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1366 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1367 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1368 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1369 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1370
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	1371 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc.");
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1372
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1373 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	1374 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1375 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1376
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1377 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1378 {
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1379 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	1380 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1381 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1382
31 ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	1383 OrthancPlugins::OrthancConfiguration globalConfiguration;
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	1384 OrthancPlugins::OrthancConfiguration configuration;
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	1385 globalConfiguration.GetSection(configuration, "STL");
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	1386
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1387 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1388 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1389
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1390 {
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1391 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1392
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1393 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1394 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
31 ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	1395 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("NIfTI", false) ? "true" : "false");
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1396 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1397
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	1398 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer);
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1399 }
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	1400
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1401 return 0;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1402 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1403
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1404
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1405 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1406 {
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	1407 Orthanc::FinalizeFramework();
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1408 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1409
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1410
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1411 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1412 {
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	1413 return ORTHANC_PLUGIN_NAME;
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1414 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1415
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1416
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1417 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1418 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1419 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1420 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1421 }

Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 32:976da5476810