Mercurial > hg > orthanc-stl
annotate Sources/Plugin.cpp @ 62:b798387b085c
added 3DHOP viewer version 4.3
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
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| date | Sat, 15 Jun 2024 16:08:52 +0200 |
| parents | c322c949bd8e |
| children | 5e11f5880e6d |
| rev | line source |
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1 /** |
| 24 | 2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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3 * SPDX-License-Identifier: GPL-3.0-or-later |
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4 */ |
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5 |
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6 /** |
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7 * STL plugin for Orthanc |
| 24 | 8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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9 * |
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10 * This program is free software: you can redistribute it and/or |
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11 * modify it under the terms of the GNU General Public License as |
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12 * published by the Free Software Foundation, either version 3 of the |
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13 * License, or (at your option) any later version. |
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14 * |
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15 * This program is distributed in the hope that it will be useful, but |
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 * General Public License for more details. |
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19 * |
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20 * You should have received a copy of the GNU General Public License |
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 **/ |
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23 |
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24 |
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25 #if !defined(ORTHANC_ENABLE_NEXUS) |
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26 # error Macro ORTHANC_ENABLE_NEXUS must be defined |
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27 #endif |
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28 |
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29 #if !defined(ORTHANC_ENABLE_3DHOP) |
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30 # error Macro ORTHANC_ENABLE_3DHOP must be defined |
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31 #endif |
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32 |
| 35 | 33 #include "StructureSetGeometry.h" |
| 34 | 34 #include "STLToolbox.h" |
| 32 | 35 #include "VTKToolbox.h" |
| 40 | 36 |
| 37 #include <EmbeddedResources.h> | |
| 32 | 38 |
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39 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" |
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40 |
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41 #include <DicomParsing/FromDcmtkBridge.h> |
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42 #include <Images/ImageProcessing.h> |
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43 #include <Logging.h> |
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44 #include <SerializationToolbox.h> |
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45 #include <SystemToolbox.h> |
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46 |
| 33 | 47 #include <vtkNew.h> |
| 48 | |
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49 #include <boost/algorithm/string.hpp> |
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50 #include <boost/thread/shared_mutex.hpp> |
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51 |
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52 |
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53 #if ORTHANC_ENABLE_NEXUS == 1 |
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54 # include <Cache/MemoryStringCache.h> |
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55 #endif |
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56 |
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57 #define ORTHANC_PLUGIN_NAME "stl" |
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58 |
| 6 | 59 |
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60 #if ORTHANC_ENABLE_NEXUS == 1 |
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61 static const char* const ORTHANC_STL_PRIVATE_CREATOR = "OrthancSTL"; |
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62 static const char* const ORTHANC_STL_MANUFACTURER = "ORTHANC^STL"; |
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63 static const uint16_t ORTHANC_STL_PRIVATE_GROUP = 0x4205u; |
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64 static const uint16_t ORTHANC_STL_CREATOR_ELEMENT = 0x0010u; |
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65 static const uint16_t ORTHANC_STL_NEXUS_ELEMENT = 0x1001u; |
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66 static const Orthanc::DicomTag DICOM_TAG_CREATOR_VERSION_UID(0x0008, 0x9123); |
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67 |
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68 /** |
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69 * Each version of the STL plugin must provide a different value for |
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70 * the CreatorVersionUID (0008,9123) tag. A new UID can be generated |
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71 * by typing: |
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72 * |
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73 * $ python -c 'import pydicom; print(pydicom.uid.generate_uid())' |
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74 * |
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75 **/ |
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76 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE = "1.2.826.0.1.3680043.8.498.90514926286349109728701975613711986292"; |
| 60 | 77 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_1_1 = "1.2.826.0.1.3680043.8.498.13468660186379895313063577332103681503"; |
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78 |
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79 static const char* const GetCreatorVersionUid(const std::string& version) |
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80 { |
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81 if (version == "mainline") |
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82 { |
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83 return ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE; |
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84 } |
| 60 | 85 else if (version == "1.1") |
| 86 { | |
| 87 return ORTHANC_STL_CREATOR_VERSION_UID_1_1; | |
| 88 } | |
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89 else |
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90 { |
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91 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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92 } |
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93 } |
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94 |
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95 static void FillOrthancExplorerCreatorVersionUid(std::map<std::string, std::string>& dictionary) |
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96 { |
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97 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE"] = ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE; |
| 60 | 98 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_1_1"] = ORTHANC_STL_CREATOR_VERSION_UID_1_1; |
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99 } |
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100 |
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101 #endif |
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102 |
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103 |
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104 // Forward declaration |
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105 void ReadStaticAsset(std::string& target, |
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106 const std::string& path); |
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107 |
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108 |
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109 /** |
| 38 | 110 * As the static assets are gzipped by the "EmbedStaticAssets.py" |
| 111 * script, we use a cache to maintain the uncompressed assets in order | |
| 112 * to avoid multiple gzip decodings. | |
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113 **/ |
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114 class ResourcesCache : public boost::noncopyable |
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115 { |
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116 private: |
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117 typedef std::map<std::string, std::string*> Content; |
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118 |
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119 boost::shared_mutex mutex_; |
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120 Content content_; |
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121 |
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122 public: |
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123 ~ResourcesCache() |
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124 { |
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125 for (Content::iterator it = content_.begin(); it != content_.end(); ++it) |
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126 { |
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127 assert(it->second != NULL); |
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128 delete it->second; |
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129 } |
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130 } |
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131 |
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132 void Answer(OrthancPluginRestOutput* output, |
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133 const std::string& path) |
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134 { |
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135 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path)); |
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136 |
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137 { |
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138 // Check whether the cache already contains the resource |
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139 boost::shared_lock<boost::shared_mutex> lock(mutex_); |
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140 |
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141 Content::const_iterator found = content_.find(path); |
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142 |
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143 if (found != content_.end()) |
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144 { |
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145 assert(found->second != NULL); |
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146 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str()); |
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147 return; |
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148 } |
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149 } |
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150 |
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151 // This resource has not been cached yet |
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152 |
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153 std::unique_ptr<std::string> item(new std::string); |
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154 ReadStaticAsset(*item, path); |
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155 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str()); |
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156 |
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157 { |
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158 // Store the resource into the cache |
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159 boost::unique_lock<boost::shared_mutex> lock(mutex_); |
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160 |
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161 if (content_.find(path) == content_.end()) |
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162 { |
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163 content_[path] = item.release(); |
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164 } |
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165 } |
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166 } |
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167 }; |
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168 |
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169 |
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170 static ResourcesCache cache_; |
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171 |
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172 void ServeFile(OrthancPluginRestOutput* output, |
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173 const char* url, |
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174 const OrthancPluginHttpRequest* request) |
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175 { |
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176 if (request->method != OrthancPluginHttpMethod_Get) |
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177 { |
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178 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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179 return; |
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180 } |
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181 |
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182 const std::string file = request->groups[0]; |
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183 |
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184 if (boost::starts_with(file, "basic-viewer/") || |
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185 boost::starts_with(file, "o3dv/")) |
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186 { |
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187 cache_.Answer(output, file); |
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188 } |
| 38 | 189 else |
| 190 { | |
| 191 Orthanc::EmbeddedResources::FileResourceId resourceId; | |
| 192 Orthanc::MimeType mimeType; | |
| 193 | |
| 194 if (file == "three.html") | |
| 195 { | |
| 196 resourceId = Orthanc::EmbeddedResources::THREE_HTML; | |
| 197 mimeType = Orthanc::MimeType_Html; | |
| 198 } | |
| 199 else if (file == "three.js") | |
| 200 { | |
| 201 resourceId = Orthanc::EmbeddedResources::THREE_JS; | |
| 202 mimeType = Orthanc::MimeType_JavaScript; | |
| 203 } | |
| 204 else if (file == "o3dv.html") | |
| 205 { | |
| 206 resourceId = Orthanc::EmbeddedResources::O3DV_HTML; | |
| 207 mimeType = Orthanc::MimeType_Html; | |
| 208 } | |
| 209 else if (file == "o3dv.js") | |
| 210 { | |
| 211 resourceId = Orthanc::EmbeddedResources::O3DV_JS; | |
| 212 mimeType = Orthanc::MimeType_JavaScript; | |
| 213 } | |
| 214 else | |
| 215 { | |
| 216 OrthancPluginSendHttpStatusCode(OrthancPlugins::GetGlobalContext(), output, 404); | |
| 217 return; | |
| 218 } | |
| 219 | |
| 220 std::string s; | |
| 221 Orthanc::EmbeddedResources::GetFileResource(s, resourceId); | |
| 222 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(mimeType)); | |
| 223 } | |
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224 } |
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225 |
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226 |
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227 |
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228 |
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229 #include <dcmtk/dcmdata/dcfilefo.h> |
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230 #include <dcmtk/dcmdata/dcsequen.h> |
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231 #include <dcmtk/dcmdata/dcuid.h> |
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232 |
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233 |
| 40 | 234 namespace |
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235 { |
| 40 | 236 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller |
| 237 { | |
| 238 private: | |
| 239 Orthanc::ImageAccessor& target_; | |
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240 |
| 40 | 241 public: |
| 242 explicit XorFiller(Orthanc::ImageAccessor& target) : | |
| 243 target_(target) | |
| 244 { | |
| 245 } | |
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246 |
| 40 | 247 virtual void Fill(int y, |
| 248 int x1, | |
| 249 int x2) ORTHANC_OVERRIDE | |
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250 { |
| 40 | 251 assert(x1 <= x2); |
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252 |
| 40 | 253 if (y >= 0 && |
| 254 y < static_cast<int>(target_.GetHeight())) | |
| 255 { | |
| 256 x1 = std::max(x1, 0); | |
| 257 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1); | |
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258 |
| 40 | 259 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1; |
| 260 | |
| 261 for (int i = x1; i <= x2; i++, p++) | |
| 262 { | |
| 263 *p = (*p ^ 0xff); | |
| 264 } | |
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265 } |
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266 } |
| 40 | 267 }; |
| 268 } | |
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269 |
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270 |
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271 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId) |
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272 { |
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273 std::string dicom; |
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274 |
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275 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false)) |
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276 { |
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277 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); |
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278 } |
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279 else |
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280 { |
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281 return new Orthanc::ParsedDicomFile(dicom); |
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282 } |
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283 } |
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284 |
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285 |
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286 static void GetReferencedVolumeAxes(Vector3D& axisX, |
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287 Vector3D& axisY, |
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288 const StructureSet& structureSet) |
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289 { |
|
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290 // This is a rough guess for the X/Y axes |
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291 axisX = Vector3D(1, 0, 0); |
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292 axisY = Vector3D(0, 1, 0); |
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293 |
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294 // Look for one instance from the referenced volume |
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295 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid(); |
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296 |
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297 Json::Value response; |
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298 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false)) |
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299 { |
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300 if (response.type() != Json::arrayValue) |
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301 { |
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302 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); |
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303 } |
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304 |
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305 bool first = true; |
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306 |
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307 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++) |
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308 { |
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309 if (response[i].type() != Json::objectValue) |
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310 { |
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311 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); |
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312 } |
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313 |
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314 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance") |
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315 { |
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316 if (first) |
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317 { |
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318 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID"); |
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319 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId)); |
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320 |
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321 std::string imageOrientation; |
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322 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT)) |
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323 { |
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324 std::vector<std::string> items; |
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325 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\'); |
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326 |
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327 double x1, x2, x3, y1, y2, y3; |
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328 |
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329 if (items.size() == 6 && |
| 33 | 330 STLToolbox::MyParseDouble(x1, items[0]) && |
| 331 STLToolbox::MyParseDouble(x2, items[1]) && | |
| 332 STLToolbox::MyParseDouble(x3, items[2]) && | |
| 333 STLToolbox::MyParseDouble(y1, items[3]) && | |
| 334 STLToolbox::MyParseDouble(y2, items[4]) && | |
| 335 STLToolbox::MyParseDouble(y3, items[5])) | |
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336 { |
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337 axisX = Vector3D(x1, x2, x3); |
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338 axisY = Vector3D(y1, y2, y3); |
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339 } |
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340 } |
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341 } |
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342 else |
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343 { |
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344 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError, |
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345 "Multiple instances with the same SOP Instance UID"); |
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346 } |
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347 } |
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348 } |
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349 } |
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350 } |
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351 |
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352 |
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353 static bool EncodeStructureSetMesh(std::string& stl, |
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354 const StructureSet& structureSet, |
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355 const StructureSetGeometry& geometry, |
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356 const std::set<std::string>& roiNames, |
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357 unsigned int resolution, |
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358 bool smooth) |
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359 { |
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360 if (resolution < 1 || |
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361 structureSet.GetPolygonsCount() < 1) |
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362 { |
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363 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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364 } |
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365 |
| 33 | 366 if (!STLToolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm())) |
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367 { |
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368 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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369 } |
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370 |
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371 Vector3D axisX, axisY; |
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372 GetReferencedVolumeAxes(axisX, axisY, structureSet); |
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373 |
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374 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY); |
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375 |
| 33 | 376 if (!STLToolbox::IsNear(1, axisX.ComputeNorm()) || |
| 377 !STLToolbox::IsNear(1, axisY.ComputeNorm()) || | |
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378 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal())) |
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379 { |
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380 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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381 } |
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382 |
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383 Extent2D extent; |
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384 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++) |
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385 { |
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386 structureSet.GetPolygon(i).Add(extent, axisX, axisY); |
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387 } |
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388 |
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389 const int depth = geometry.GetSlicesCount(); |
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390 |
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391 vtkNew<vtkImageData> volume; |
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392 volume->SetDimensions(resolution, resolution, depth); |
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393 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1); |
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394 |
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395 assert(sizeof(unsigned char) == 1); |
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396 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth); |
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397 |
| 30 | 398 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution); |
| 399 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution); | |
| 400 const double pixelSpacingZ = geometry.GetSlicesSpacing(); | |
| 401 | |
| 402 bool first = true; | |
| 403 | |
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404 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++) |
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405 { |
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406 const StructurePolygon& polygon = structureSet.GetPolygon(i); |
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407 if (roiNames.find(polygon.GetRoiName()) != roiNames.end()) |
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408 { |
|
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409 // This polygon corresponds to a ROI of interest |
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410 |
|
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411 size_t z; |
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412 if (geometry.LookupSliceIndex(z, polygon)) |
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413 { |
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414 std::vector<Orthanc::ImageProcessing::ImagePoint> points; |
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415 points.reserve(polygon.GetPointsCount()); |
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416 |
|
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417 for (size_t j = 0; j < polygon.GetPointsCount(); j++) |
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418 { |
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419 const Vector3D& point = polygon.GetPoint(j); |
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420 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution); |
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421 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution); |
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422 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)), |
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423 static_cast<int32_t>(std::floor(y)))); |
| 30 | 424 |
| 425 if (first) | |
| 426 { | |
| 427 first = false; | |
| 428 volume->SetOrigin(point.GetX() - x * pixelSpacingX, | |
| 429 point.GetY() - y * pixelSpacingY, | |
| 430 point.GetZ() - z * pixelSpacingZ); | |
| 431 } | |
|
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432 } |
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433 |
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434 Orthanc::ImageAccessor slice; |
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435 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */, |
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436 reinterpret_cast<uint8_t*>(volume->GetScalarPointer()) + z * resolution * resolution); |
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437 |
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438 XorFiller filler(slice); |
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439 Orthanc::ImageProcessing::FillPolygon(filler, points); |
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440 } |
|
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441 } |
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442 } |
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443 |
| 30 | 444 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ); |
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445 |
| 32 | 446 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth); |
|
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447 } |
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448 |
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449 |
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450 void ListStructures(OrthancPluginRestOutput* output, |
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451 const char* url, |
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452 const OrthancPluginHttpRequest* request) |
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453 { |
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454 if (request->method != OrthancPluginHttpMethod_Get) |
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455 { |
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456 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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457 return; |
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458 } |
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459 |
|
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460 const std::string instanceId(request->groups[0]); |
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461 |
|
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462 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
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463 |
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464 std::set<std::string> names; |
| 33 | 465 StructureSet::ListStructuresNames(names, *dicom); |
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466 |
|
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467 Json::Value answer = Json::arrayValue; |
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468 |
|
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469 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it) |
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470 { |
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471 answer.append(*it); |
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472 } |
|
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473 |
|
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474 std::string s = answer.toStyledString(); |
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475 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); |
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476 } |
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|
477 |
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478 |
|
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479 static void AddDefaultTagValue(Json::Value& target, |
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480 const Orthanc::DicomTag& tag, |
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481 const std::string& value) |
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482 { |
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483 if (!target.isMember(tag.Format())) |
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484 { |
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485 target[tag.Format()] = value; |
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486 } |
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|
487 } |
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|
488 |
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|
489 |
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490 static void AddDefaultTagValue(Json::Value& target, |
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491 const DcmTagKey& tag, |
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492 const std::string& value) |
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493 { |
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494 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value); |
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495 } |
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|
496 |
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497 |
| 7 | 498 static void CallCreateDicom(Json::Value& answer, |
| 499 const std::string& stl, | |
| 500 const Json::Value& body, | |
| 501 const std::string& parentStudy, | |
| 502 const std::string& defaultSeriesDescription, | |
| 503 const std::string& defaultFrameOfReferenceUid, | |
| 504 const std::string& defaultTitle) | |
| 505 { | |
| 506 static const char* const KEY_TAGS = "Tags"; | |
| 507 | |
| 508 Json::Value normalized = Json::objectValue; | |
| 509 | |
| 510 if (body.isMember(KEY_TAGS)) | |
| 511 { | |
| 512 const Json::Value& tags = body[KEY_TAGS]; | |
| 513 | |
| 514 if (tags.type() != Json::objectValue) | |
| 515 { | |
| 516 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object"); | |
| 517 } | |
| 518 | |
| 519 std::vector<std::string> keys = tags.getMemberNames(); | |
| 520 for (size_t i = 0; i < keys.size(); i++) | |
| 521 { | |
| 522 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]); | |
| 523 normalized[tag.Format()] = tags[keys[i]]; | |
| 524 } | |
| 525 } | |
| 526 | |
| 527 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format())) | |
| 528 { | |
| 529 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription; | |
| 530 } | |
| 531 | |
| 532 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1"); | |
| 533 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid); | |
| 534 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1"); | |
| 535 | |
| 536 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO"); | |
| 537 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION); | |
| 538 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle); | |
| 539 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin"); | |
| 540 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin"); | |
| 541 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, ""); | |
| 542 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION); | |
| 543 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, ""); | |
| 544 | |
| 545 std::string date, time; | |
| 546 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); | |
| 547 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time); | |
| 548 | |
| 549 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(), | |
| 550 DCM_MeasurementUnitsCodeSequence.getElement()); | |
| 551 | |
| 552 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format())) | |
| 553 { | |
| 554 Json::Value item; | |
| 555 item["CodeValue"] = "mm"; | |
| 556 item["CodingSchemeDesignator"] = "UCUM"; | |
| 557 item["CodeMeaning"] = defaultTitle; | |
| 558 | |
| 559 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item); | |
| 560 } | |
| 561 | |
| 562 std::string content; | |
| 563 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl); | |
| 564 | |
| 565 Json::Value create; | |
| 566 create["Content"] = content; | |
| 567 create["Parent"] = parentStudy; | |
| 568 create["Tags"] = normalized; | |
| 569 | |
| 570 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false)) | |
| 571 { | |
| 572 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL"); | |
| 573 } | |
| 574 } | |
| 575 | |
| 576 | |
| 577 void EncodeStructureSet(OrthancPluginRestOutput* output, | |
| 578 const char* url, | |
| 579 const OrthancPluginHttpRequest* request) | |
|
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580 { |
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581 static const char* const KEY_INSTANCE = "Instance"; |
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582 static const char* const KEY_RESOLUTION = "Resolution"; |
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583 static const char* const KEY_ROI_NAMES = "RoiNames"; |
|
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584 static const char* const KEY_SMOOTH = "Smooth"; |
|
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|
585 static const char* const KEY_STRICT = "Strict"; |
|
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encoding of RT-STRUCT as STL
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diff
changeset
|
586 |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
587 if (request->method != OrthancPluginHttpMethod_Post) |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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parents:
0
diff
changeset
|
588 { |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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diff
changeset
|
589 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST"); |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
590 return; |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
591 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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diff
changeset
|
592 |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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diff
changeset
|
593 Json::Value body; |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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594 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize)) |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
595 { |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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596 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
597 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
598 |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
599 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE); |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
600 const bool smooth = (body.isMember(KEY_SMOOTH) ? |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
601 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) : |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
602 true /* smooth by default */); |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
603 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ? |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
604 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) : |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
605 256 /* default value */); |
|
28
410003c50b17
improved computation of RT-STRUCT geometry
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diff
changeset
|
606 const bool strict = (body.isMember(KEY_STRICT) ? |
|
410003c50b17
improved computation of RT-STRUCT geometry
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diff
changeset
|
607 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) : |
|
410003c50b17
improved computation of RT-STRUCT geometry
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changeset
|
608 true /* strict by default */); |
|
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
609 |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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diff
changeset
|
610 std::set<std::string> roiNames; |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
611 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES); |
|
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encoding of RT-STRUCT as STL
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diff
changeset
|
612 |
|
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
613 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
|
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added route "/instances/{id}/stl"
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diff
changeset
|
614 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
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|
615 StructureSet structureSet(*dicom); |
|
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added route "/instances/{id}/stl"
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changeset
|
616 |
|
28
410003c50b17
improved computation of RT-STRUCT geometry
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|
617 StructureSetGeometry geometry(structureSet, strict); |
|
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changeset
|
618 |
|
3
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added route "/instances/{id}/stl"
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|
619 std::string stl; |
|
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improved computation of RT-STRUCT geometry
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620 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth)) |
|
1
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encoding of RT-STRUCT as STL
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changeset
|
621 { |
|
8
d1267c6c33e1
added route /stl/encode-nifti
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diff
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|
622 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT"); |
|
1
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encoding of RT-STRUCT as STL
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|
623 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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|
624 else |
|
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encoding of RT-STRUCT as STL
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|
625 { |
| 7 | 626 std::string seriesDescription; |
|
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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changeset
|
627 |
| 7 | 628 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION)) |
|
1
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encoding of RT-STRUCT as STL
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|
629 { |
| 7 | 630 seriesDescription += ": "; |
| 631 } | |
| 632 else | |
| 633 { | |
| 634 seriesDescription.clear(); | |
|
1
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encoding of RT-STRUCT as STL
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|
635 } |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
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diff
changeset
|
636 |
| 7 | 637 bool first = true; |
| 638 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it) | |
|
1
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encoding of RT-STRUCT as STL
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639 { |
| 7 | 640 if (first) |
|
1
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encoding of RT-STRUCT as STL
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|
641 { |
| 7 | 642 first = false; |
|
1
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encoding of RT-STRUCT as STL
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|
643 } |
|
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encoding of RT-STRUCT as STL
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|
644 else |
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encoding of RT-STRUCT as STL
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|
645 { |
| 7 | 646 seriesDescription += ", "; |
|
3
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added route "/instances/{id}/stl"
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diff
changeset
|
647 } |
|
2
2bdb9acb7dcf
added STL viewer button at instance level too
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parents:
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diff
changeset
|
648 |
| 7 | 649 seriesDescription += *it; |
|
4
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generated STL pass dciodvfy
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diff
changeset
|
650 } |
|
5ee4448a8ff8
generated STL pass dciodvfy
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diff
changeset
|
651 |
| 7 | 652 std::string frameOfReferenceUid; |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
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diff
changeset
|
653 if (structureSet.HasFrameOfReferenceUid()) |
|
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generated STL pass dciodvfy
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parents:
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diff
changeset
|
654 { |
| 7 | 655 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid(); |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
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parents:
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diff
changeset
|
656 } |
|
5ee4448a8ff8
generated STL pass dciodvfy
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parents:
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diff
changeset
|
657 else |
|
5ee4448a8ff8
generated STL pass dciodvfy
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diff
changeset
|
658 { |
| 7 | 659 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance); |
|
3
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diff
changeset
|
660 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
661 |
| 7 | 662 Json::Value answer; |
| 663 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription, | |
| 664 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT"); | |
|
4
5ee4448a8ff8
generated STL pass dciodvfy
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diff
changeset
|
665 |
| 7 | 666 std::string s = answer.toStyledString(); |
| 667 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); | |
|
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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parents:
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diff
changeset
|
668 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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diff
changeset
|
669 } |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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parents:
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diff
changeset
|
670 |
|
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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diff
changeset
|
671 |
|
3
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
672 void ExtractStl(OrthancPluginRestOutput* output, |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
673 const char* url, |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
674 const OrthancPluginHttpRequest* request) |
|
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added route "/instances/{id}/stl"
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diff
changeset
|
675 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
676 if (request->method != OrthancPluginHttpMethod_Get) |
|
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added route "/instances/{id}/stl"
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diff
changeset
|
677 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
678 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
|
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added route "/instances/{id}/stl"
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diff
changeset
|
679 return; |
|
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added route "/instances/{id}/stl"
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diff
changeset
|
680 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
681 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
682 const std::string instanceId(request->groups[0]); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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parents:
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diff
changeset
|
683 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
684 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
685 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset(); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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2
diff
changeset
|
686 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
687 std::string stl; |
| 33 | 688 if (STLToolbox::GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL || |
| 689 STLToolbox::GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage || | |
|
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
690 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
691 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
692 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
693 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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2
diff
changeset
|
694 else |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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2
diff
changeset
|
695 { |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
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2
diff
changeset
|
696 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
697 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL); |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
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diff
changeset
|
698 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
699 } |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
700 |
|
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
701 |
| 6 | 702 |
|
8
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
703 void EncodeNifti(OrthancPluginRestOutput* output, |
|
d1267c6c33e1
added route /stl/encode-nifti
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7
diff
changeset
|
704 const char* url, |
|
d1267c6c33e1
added route /stl/encode-nifti
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diff
changeset
|
705 const OrthancPluginHttpRequest* request) |
|
d1267c6c33e1
added route /stl/encode-nifti
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7
diff
changeset
|
706 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
707 static const char* const KEY_NIFTI = "Nifti"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
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7
diff
changeset
|
708 static const char* const KEY_RESOLUTION = "Resolution"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
709 static const char* const KEY_PARENT_STUDY = "ParentStudy"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
710 static const char* const KEY_SMOOTH = "Smooth"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
711 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
712 if (request->method != OrthancPluginHttpMethod_Post) |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
713 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
714 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST"); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
715 return; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
716 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
717 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
718 Json::Value body; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
719 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize)) |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
720 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
721 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
722 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
723 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
724 std::string mime, nifti; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
725 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI))) |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
726 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
727 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file"); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
728 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
729 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
730 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
731 const bool smooth = (body.isMember(KEY_SMOOTH) ? |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
732 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) : |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
733 true /* smooth by default */); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
734 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ? |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
735 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) : |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
736 256 /* default value */); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
737 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
738 vtkNew<vtkImageData> volume; |
| 32 | 739 VTKToolbox::LoadNifti(volume.Get(), nifti); |
|
8
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
740 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
741 std::string stl; |
| 32 | 742 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth)) |
|
8
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
743 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
744 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI"); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
745 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
746 else |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
747 { |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
748 const std::string title = "STL model generated from NIfTI"; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
749 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
750 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
751 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
752 Json::Value answer; |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
753 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
754 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
755 std::string s = answer.toStyledString(); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
756 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
757 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
758 } |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
759 |
|
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
760 |
|
46
9b2a2fcc9878
added option to disable Nexus support
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
761 #if ORTHANC_ENABLE_NEXUS == 1 |
|
9b2a2fcc9878
added option to disable Nexus support
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
45
diff
changeset
|
762 |
|
45
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
763 void ServeNexusAssets(OrthancPluginRestOutput* output, |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
764 const char* url, |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
765 const OrthancPluginHttpRequest* request) |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
766 { |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
767 if (request->method != OrthancPluginHttpMethod_Get) |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
768 { |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
769 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
770 return; |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
771 } |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
772 |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
773 const std::string file = request->groups[0]; |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
774 |
|
62
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
775 if (file == "three-84.js") |
|
45
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
776 { |
|
62
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
777 cache_.Answer(output, "nexus/three-84.js"); |
|
45
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
778 } |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
779 else |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
780 { |
|
62
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
781 Orthanc::EmbeddedResources::FileResourceId resourceId; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
782 Orthanc::MimeType mimeType; |
|
45
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
40
diff
changeset
|
783 |
|
62
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
784 if (file == "threejs.html") |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
785 { |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
786 resourceId = Orthanc::EmbeddedResources::NEXUS_HTML; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
787 mimeType = Orthanc::MimeType_Html; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
788 } |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
789 else if (file == "js/meco.js") |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
790 { |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
791 resourceId = Orthanc::EmbeddedResources::NEXUS_MECO_JS; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
792 mimeType = Orthanc::MimeType_JavaScript; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
793 } |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
794 else if (file == "js/nexus.js") |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
795 { |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
796 resourceId = Orthanc::EmbeddedResources::NEXUS_JS; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
797 mimeType = Orthanc::MimeType_JavaScript; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
798 } |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
799 else if (file == "js/nexus_three.js") |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
800 { |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
801 resourceId = Orthanc::EmbeddedResources::NEXUS_THREE_JS; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
802 mimeType = Orthanc::MimeType_JavaScript; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
803 } |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
804 else if (file == "js/TrackballControls.js") |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
805 { |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
806 resourceId = Orthanc::EmbeddedResources::NEXUS_TRACKBALL_JS; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
807 mimeType = Orthanc::MimeType_JavaScript; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
808 } |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
809 else |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
810 { |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
811 OrthancPluginSendHttpStatusCode(OrthancPlugins::GetGlobalContext(), output, 404); |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
812 return; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
813 } |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
814 |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
815 std::string s; |
|
b798387b085c
added 3DHOP viewer version 4.3
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
60
diff
changeset
|
816 Orthanc::EmbeddedResources::GetFileResource(s, resourceId); |
|
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added 3DHOP viewer version 4.3
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817 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(mimeType)); |
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818 } |
|
45
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819 } |
|
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changeset
|
820 |
|
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changeset
|
821 |
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822 static Orthanc::MemoryStringCache nexusCache_; |
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823 |
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824 void ExtractNexusModel(OrthancPluginRestOutput* output, |
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825 const char* url, |
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826 const OrthancPluginHttpRequest* request) |
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827 { |
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828 OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); |
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829 |
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830 if (request->method != OrthancPluginHttpMethod_Get) |
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831 { |
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832 OrthancPluginSendMethodNotAllowed(context, output, "GET"); |
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833 return; |
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834 } |
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|
835 |
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836 const std::string instanceId = request->groups[0]; |
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837 |
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838 std::string range; |
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839 |
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840 for (uint32_t i = 0; i < request->headersCount; i++) |
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841 { |
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842 if (std::string(request->headersKeys[i]) == "range") |
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843 { |
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844 range = request->headersValues[i]; |
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845 } |
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|
846 } |
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|
847 |
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848 static const std::string BYTES = "bytes="; |
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849 |
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850 if (!boost::starts_with(range, BYTES)) |
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851 { |
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852 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
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853 return; |
|
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|
854 } |
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|
855 |
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856 std::vector<std::string> tokens; |
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857 Orthanc::Toolbox::TokenizeString(tokens, range.substr(BYTES.length()), '-'); |
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858 |
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859 uint64_t start, end; |
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860 |
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861 if (tokens.size() != 2 || |
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862 !Orthanc::SerializationToolbox::ParseUnsignedInteger64(start, tokens[0]) || |
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863 !Orthanc::SerializationToolbox::ParseUnsignedInteger64(end, tokens[1]) || |
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864 start < 0 || |
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865 start > end) |
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866 { |
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867 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
|
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868 return; |
|
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|
869 } |
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|
870 |
|
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|
871 uint64_t modelSize; |
|
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872 std::string part; |
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|
873 |
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|
874 #if 0 |
|
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|
875 { |
|
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|
876 // Use no cache |
|
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877 std::string model; |
|
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878 if (!OrthancPlugins::RestApiGetString(model, "/instances/" + instanceId + "/content/4205-1001", false)) |
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|
879 { |
|
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|
880 OrthancPluginSendHttpStatusCode(context, output, 404); |
|
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|
881 return; |
|
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|
882 } |
|
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|
883 |
|
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884 modelSize = model.size(); |
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|
885 |
|
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|
886 if (end >= modelSize) |
|
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|
887 { |
|
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|
888 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
|
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|
889 return; |
|
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|
890 } |
|
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|
891 |
|
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|
892 part = model.substr(start, end - start + 1); |
|
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|
893 } |
|
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|
894 #else |
|
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|
895 { |
|
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|
896 Orthanc::MemoryStringCache::Accessor accessor(nexusCache_); |
|
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|
897 |
|
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|
898 std::string model; |
|
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899 if (!accessor.Fetch(model, instanceId)) |
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900 { |
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901 if (OrthancPlugins::RestApiGetString(model, "/instances/" + instanceId + "/content/4205-1001", false)) |
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902 { |
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|
903 accessor.Add(instanceId, model); |
|
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904 } |
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|
905 else |
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906 { |
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|
907 OrthancPluginSendHttpStatusCode(context, output, 404); |
|
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|
908 return; |
|
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|
909 } |
|
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|
910 } |
|
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|
911 |
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|
912 modelSize = model.size(); |
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|
913 |
|
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|
914 if (end >= modelSize) |
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|
915 { |
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|
916 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
|
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|
917 return; |
|
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918 } |
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|
919 |
|
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|
920 part = model.substr(start, end - start + 1); |
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|
921 } |
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|
922 #endif |
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|
923 |
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924 std::string s = ("bytes " + boost::lexical_cast<std::string>(start) + "-" + |
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|
925 boost::lexical_cast<std::string>(end) + "/" + |
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|
926 boost::lexical_cast<std::string>(modelSize)); |
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|
927 OrthancPluginSetHttpHeader(context, output, "Content-Range", s.c_str()); |
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|
928 |
|
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|
929 s = boost::lexical_cast<std::string>(part.size()); |
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|
930 OrthancPluginSetHttpHeader(context, output, "Content-Length", s.c_str()); |
|
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|
931 OrthancPluginSetHttpHeader(context, output, "Content-Type", "application/octet-stream"); |
|
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|
932 |
|
967f947014ac
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Sebastien Jodogne <s.jodogne@gmail.com>
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40
diff
changeset
|
933 OrthancPluginSendHttpStatus(context, output, 206 /* partial content */, part.c_str(), part.size()); |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
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40
diff
changeset
|
934 } |
|
967f947014ac
adding experimental support for nexus models
Sebastien Jodogne <s.jodogne@gmail.com>
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40
diff
changeset
|
935 |
|
50
bf4c4e4e7198
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Sebastien Jodogne <s.jodogne@gmail.com>
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48
diff
changeset
|
936 |
|
bf4c4e4e7198
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diff
changeset
|
937 void DicomizeNexusModel(OrthancPluginRestOutput* output, |
|
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diff
changeset
|
938 const char* url, |
|
bf4c4e4e7198
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diff
changeset
|
939 const OrthancPluginHttpRequest* request) |
|
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diff
changeset
|
940 { |
|
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diff
changeset
|
941 static const char* KEY_CONTENT = "Content"; |
|
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diff
changeset
|
942 static const char* KEY_PARENT = "Parent"; |
|
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diff
changeset
|
943 static const char* KEY_TAGS = "Tags"; |
|
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diff
changeset
|
944 static const char* KEY_PRIVATE_CREATOR = "PrivateCreator"; |
|
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diff
changeset
|
945 |
|
bf4c4e4e7198
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diff
changeset
|
946 OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); |
|
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diff
changeset
|
947 |
|
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diff
changeset
|
948 if (request->method != OrthancPluginHttpMethod_Post) |
|
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diff
changeset
|
949 { |
|
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diff
changeset
|
950 OrthancPluginSendMethodNotAllowed(context, output, "POST"); |
|
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changeset
|
951 return; |
|
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changeset
|
952 } |
|
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diff
changeset
|
953 |
|
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diff
changeset
|
954 Json::Value body; |
|
bf4c4e4e7198
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changeset
|
955 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize) || |
|
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changeset
|
956 body.type() != Json::objectValue || |
|
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changeset
|
957 !body.isMember(KEY_TAGS) || |
|
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changeset
|
958 body[KEY_TAGS].type() != Json::objectValue) |
|
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diff
changeset
|
959 { |
|
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diff
changeset
|
960 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
|
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changeset
|
961 } |
|
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changeset
|
962 |
|
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changeset
|
963 if (!body.isMember(KEY_CONTENT) || |
|
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changeset
|
964 body[KEY_CONTENT].type() != Json::stringValue) |
|
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changeset
|
965 { |
|
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changeset
|
966 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, |
|
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changeset
|
967 "POST body missing string field \"" + std::string(KEY_CONTENT) + "\""); |
|
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changeset
|
968 } |
|
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diff
changeset
|
969 |
|
55
41e3b79e7f4b
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diff
changeset
|
970 std::string decoded; |
|
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diff
changeset
|
971 Orthanc::Toolbox::DecodeBase64(decoded, body[KEY_CONTENT].asString()); |
|
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diff
changeset
|
972 |
|
41e3b79e7f4b
added check of Nexus magic header
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diff
changeset
|
973 if (decoded.size() < 4 || |
|
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diff
changeset
|
974 decoded[0] != 0x20 || |
|
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diff
changeset
|
975 decoded[1] != 0x73 || |
|
41e3b79e7f4b
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diff
changeset
|
976 decoded[2] != 0x78 || |
|
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diff
changeset
|
977 decoded[3] != 0x4e) |
|
41e3b79e7f4b
added check of Nexus magic header
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diff
changeset
|
978 { |
|
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diff
changeset
|
979 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
|
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added check of Nexus magic header
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diff
changeset
|
980 "This is not a valid Nexus file, its magic header is incorrect"); |
|
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diff
changeset
|
981 } |
|
41e3b79e7f4b
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diff
changeset
|
982 |
|
50
bf4c4e4e7198
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diff
changeset
|
983 Json::Value creationBody = Json::objectValue; |
|
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changeset
|
984 |
|
bf4c4e4e7198
added route /stl/create-nexus
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diff
changeset
|
985 creationBody[KEY_TAGS] = body[KEY_TAGS]; |
|
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changeset
|
986 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_MANUFACTURER.Format()] = ORTHANC_STL_MANUFACTURER; |
|
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diff
changeset
|
987 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()] = "1.2.840.10008.5.1.4.1.1.66"; |
|
bf4c4e4e7198
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changeset
|
988 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_MODALITY.Format()] = "OT"; |
|
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diff
changeset
|
989 creationBody[KEY_TAGS][DICOM_TAG_CREATOR_VERSION_UID.Format()] = GetCreatorVersionUid(ORTHANC_STL_VERSION); |
|
bf4c4e4e7198
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diff
changeset
|
990 creationBody[KEY_TAGS][Orthanc::DicomTag(ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_CREATOR_ELEMENT).Format()] = ORTHANC_STL_PRIVATE_CREATOR; |
| 51 | 991 creationBody[KEY_TAGS][Orthanc::DicomTag(ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_NEXUS_ELEMENT).Format()] = |
| 992 "data:application/octet-stream;base64," + body[KEY_CONTENT].asString(); | |
|
50
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diff
changeset
|
993 creationBody[KEY_PRIVATE_CREATOR] = ORTHANC_STL_PRIVATE_CREATOR; |
|
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diff
changeset
|
994 |
|
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diff
changeset
|
995 if (body.isMember(KEY_PARENT)) |
|
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diff
changeset
|
996 { |
|
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changeset
|
997 creationBody[KEY_PARENT] = body[KEY_PARENT]; |
|
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changeset
|
998 } |
|
bf4c4e4e7198
added route /stl/create-nexus
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diff
changeset
|
999 |
|
bf4c4e4e7198
added route /stl/create-nexus
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changeset
|
1000 std::string bodyString; |
|
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changeset
|
1001 Orthanc::Toolbox::WriteFastJson(bodyString, creationBody); |
|
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diff
changeset
|
1002 |
|
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diff
changeset
|
1003 std::string result; |
|
bf4c4e4e7198
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changeset
|
1004 if (OrthancPlugins::RestApiPost(result, "/tools/create-dicom", |
|
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changeset
|
1005 bodyString.empty() ? NULL : bodyString.c_str(), |
|
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changeset
|
1006 bodyString.size(), false)) |
|
bf4c4e4e7198
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changeset
|
1007 { |
|
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changeset
|
1008 OrthancPluginAnswerBuffer(context, output, result.empty() ? NULL : result.c_str(), |
|
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changeset
|
1009 result.size(), "application/json"); |
|
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changeset
|
1010 } |
|
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changeset
|
1011 else |
|
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changeset
|
1012 { |
|
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changeset
|
1013 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
|
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changeset
|
1014 } |
|
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changeset
|
1015 } |
|
bf4c4e4e7198
added route /stl/create-nexus
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diff
changeset
|
1016 |
|
46
9b2a2fcc9878
added option to disable Nexus support
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45
diff
changeset
|
1017 #endif |
|
9b2a2fcc9878
added option to disable Nexus support
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45
diff
changeset
|
1018 |
|
45
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diff
changeset
|
1019 |
|
62
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diff
changeset
|
1020 #if ORTHANC_ENABLE_3DHOP == 1 |
|
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changeset
|
1021 |
|
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added 3DHOP viewer version 4.3
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diff
changeset
|
1022 void Serve3DHOPAssets(OrthancPluginRestOutput* output, |
|
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changeset
|
1023 const char* url, |
|
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diff
changeset
|
1024 const OrthancPluginHttpRequest* request) |
|
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changeset
|
1025 { |
|
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changeset
|
1026 if (request->method != OrthancPluginHttpMethod_Get) |
|
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diff
changeset
|
1027 { |
|
b798387b085c
added 3DHOP viewer version 4.3
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diff
changeset
|
1028 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
|
b798387b085c
added 3DHOP viewer version 4.3
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diff
changeset
|
1029 return; |
|
b798387b085c
added 3DHOP viewer version 4.3
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diff
changeset
|
1030 } |
|
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added 3DHOP viewer version 4.3
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diff
changeset
|
1031 |
|
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diff
changeset
|
1032 const std::string file = request->groups[0]; |
|
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changeset
|
1033 cache_.Answer(output, "3dhop/" + file); |
|
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changeset
|
1034 } |
|
b798387b085c
added 3DHOP viewer version 4.3
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changeset
|
1035 |
|
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diff
changeset
|
1036 #endif |
|
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diff
changeset
|
1037 |
|
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changeset
|
1038 |
|
0
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1039 extern "C" |
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1040 { |
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1041 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context) |
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1042 { |
| 47 | 1043 OrthancPlugins::SetGlobalContext(context, ORTHANC_PLUGIN_NAME); |
|
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1044 |
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1045 /* Check the version of the Orthanc core */ |
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1046 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0) |
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1047 { |
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1048 char info[1024]; |
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1049 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin", |
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1050 OrthancPlugins::GetGlobalContext()->orthancVersion, |
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1051 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, |
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1052 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, |
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1053 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); |
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1054 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info); |
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1055 return -1; |
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1056 } |
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1057 |
| 47 | 1058 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 12, 4) |
| 1059 Orthanc::Logging::InitializePluginContext(context, ORTHANC_PLUGIN_NAME); | |
| 1060 #elif ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2) | |
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1061 Orthanc::Logging::InitializePluginContext(context); |
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1062 #else |
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1063 Orthanc::Logging::Initialize(context); |
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1064 #endif |
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1065 |
|
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1066 Orthanc::InitializeFramework("", false); |
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1067 |
|
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1068 const bool hasCreateDicomStl = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1); |
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1069 |
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1070 if (!hasCreateDicomStl) |
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1071 { |
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1072 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion) |
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1073 << ") is insufficient to create DICOM STL, it should be above 1.12.1"; |
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1074 } |
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1075 |
|
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1076 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc."); |
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1077 |
|
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1078 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true); |
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1079 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true); |
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1080 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true); |
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1081 |
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1082 if (hasCreateDicomStl) |
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1083 { |
|
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1084 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true); |
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1085 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true); |
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1086 } |
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1087 |
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1088 OrthancPlugins::OrthancConfiguration globalConfiguration; |
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1089 OrthancPlugins::OrthancConfiguration configuration; |
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1090 globalConfiguration.GetSection(configuration, "STL"); |
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1091 |
|
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1092 #if ORTHANC_ENABLE_NEXUS == 1 |
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1093 const bool enableNexus = configuration.GetBooleanValue("EnableNexus", false); |
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1094 |
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1095 if (enableNexus) |
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1096 { |
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1097 LOG(INFO) << "Support for Nexus is enabled"; |
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1098 nexusCache_.SetMaximumSize(512 * 1024 * 1024); // Cache of 512MB for Nexus |
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1099 OrthancPlugins::RegisterRestCallback<ExtractNexusModel>("/instances/([0-9a-f-]+)/nexus", true); |
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1100 OrthancPlugins::RegisterRestCallback<ServeNexusAssets>("/stl/nexus/(.*)", true); |
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1101 |
|
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1102 #if ORTHANC_ENABLE_3DHOP == 1 |
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1103 OrthancPlugins::RegisterRestCallback<Serve3DHOPAssets>("/stl/3dhop/(.*)", true); |
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1104 |
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1105 /** |
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1106 * The 3DHOP viewer only supports ".nxs", ".nxz", and ".ply" extensions, |
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1107 * as can be seen in the "minimal/js/presenter.js" file. Furthermore, it |
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1108 * requires the extension to be part of the URL. |
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1109 **/ |
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1110 OrthancPlugins::RegisterRestCallback<ExtractNexusModel>("/stl/3dhop-instances/([0-9a-f-]+).nxz", true); |
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1111 #endif |
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1112 |
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1113 const bool hasCreateNexus_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 9, 4); |
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1114 |
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1115 if (hasCreateNexus_) |
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1116 { |
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1117 OrthancPlugins::RegisterRestCallback<DicomizeNexusModel>("/stl/create-nexus", true); |
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1118 |
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1119 if (OrthancPluginRegisterPrivateDictionaryTag( |
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1120 context, ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_CREATOR_ELEMENT, OrthancPluginValueRepresentation_LO, |
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1121 "PrivateCreator", 1, 1, ORTHANC_STL_PRIVATE_CREATOR) != OrthancPluginErrorCode_Success || |
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1122 OrthancPluginRegisterPrivateDictionaryTag( |
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1123 context, ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_NEXUS_ELEMENT, OrthancPluginValueRepresentation_OB, |
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1124 "NexusData", 1, 1, ORTHANC_STL_PRIVATE_CREATOR) != OrthancPluginErrorCode_Success) |
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1125 { |
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1126 LOG(ERROR) << "Cannot register the private DICOM tags for handling Nexus"; |
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1127 } |
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1128 } |
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1129 else |
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1130 { |
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1131 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion) |
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1132 << ") is insufficient to create DICOM-ize Nexus models, it should be above 1.9.4"; |
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1133 } |
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1134 } |
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1135 else |
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1136 { |
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1137 LOG(INFO) << "Support for Nexus is disabled"; |
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1138 } |
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1139 #else |
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1140 const bool enableNexus = false; |
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1141 #endif |
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1142 |
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1143 // Extend the default Orthanc Explorer with custom JavaScript for STL |
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1144 std::string explorer; |
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1145 |
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1146 { |
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1147 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER); |
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1148 |
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1149 std::map<std::string, std::string> dictionary; |
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1150 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl ? "true" : "false"); |
| 40 | 1151 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("EnableNIfTI", false) ? "true" : "false"); |
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1152 dictionary["IS_NEXUS_ENABLED"] = (enableNexus ? "true" : "false"); |
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1153 dictionary["IS_3DHOP_ENABLED"] = ((ORTHANC_ENABLE_3DHOP == 1) ? "true" : "false"); |
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improved handling of CreatorVersionUID
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1154 FillOrthancExplorerCreatorVersionUid(dictionary); |
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1155 |
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2
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1156 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary); |
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1157 |
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5fc3ea6acbd5
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1158 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer); |
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1159 } |
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1160 |
|
0
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1161 return 0; |
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1162 } |
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1163 |
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1164 |
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1165 ORTHANC_PLUGINS_API void OrthancPluginFinalize() |
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1166 { |
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1
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encoding of RT-STRUCT as STL
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1167 Orthanc::FinalizeFramework(); |
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1168 } |
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1169 |
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1170 |
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1171 ORTHANC_PLUGINS_API const char* OrthancPluginGetName() |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1172 { |
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1173 return ORTHANC_PLUGIN_NAME; |
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1174 } |
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1175 |
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1176 |
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1177 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() |
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1178 { |
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1179 return ORTHANC_STL_VERSION; |
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1180 } |
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1181 } |