Mercurial > hg > orthanc-stl
annotate Sources/Plugin.cpp @ 68:054e36474998 OrthancSTL-1.2
OrthancSTL-1.2
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sun, 16 Jun 2024 21:12:22 +0200 |
parents | 5e11f5880e6d |
children | a5c1be2ec26a |
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1 /** |
24 | 2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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3 * SPDX-License-Identifier: GPL-3.0-or-later |
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4 */ |
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5 |
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6 /** |
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7 * STL plugin for Orthanc |
24 | 8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium |
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9 * |
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10 * This program is free software: you can redistribute it and/or |
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11 * modify it under the terms of the GNU General Public License as |
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12 * published by the Free Software Foundation, either version 3 of the |
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13 * License, or (at your option) any later version. |
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14 * |
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15 * This program is distributed in the hope that it will be useful, but |
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 * General Public License for more details. |
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19 * |
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20 * You should have received a copy of the GNU General Public License |
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 **/ |
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23 |
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24 |
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25 #if !defined(ORTHANC_ENABLE_NEXUS) |
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26 # error Macro ORTHANC_ENABLE_NEXUS must be defined |
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27 #endif |
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28 |
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29 #if !defined(ORTHANC_ENABLE_3DHOP) |
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30 # error Macro ORTHANC_ENABLE_3DHOP must be defined |
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31 #endif |
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32 |
35 | 33 #include "StructureSetGeometry.h" |
34 | 34 #include "STLToolbox.h" |
32 | 35 #include "VTKToolbox.h" |
40 | 36 |
37 #include <EmbeddedResources.h> | |
32 | 38 |
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39 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h" |
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40 |
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41 #include <DicomParsing/FromDcmtkBridge.h> |
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42 #include <Images/ImageProcessing.h> |
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43 #include <Logging.h> |
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44 #include <SerializationToolbox.h> |
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45 #include <SystemToolbox.h> |
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46 |
33 | 47 #include <vtkNew.h> |
48 | |
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49 #include <boost/algorithm/string.hpp> |
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50 #include <boost/thread/shared_mutex.hpp> |
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51 |
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52 |
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53 #if ORTHANC_ENABLE_NEXUS == 1 |
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54 # include <Cache/MemoryStringCache.h> |
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55 #endif |
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56 |
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57 #define ORTHANC_PLUGIN_NAME "stl" |
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58 |
6 | 59 |
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60 #if ORTHANC_ENABLE_NEXUS == 1 |
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61 static const char* const ORTHANC_STL_PRIVATE_CREATOR = "OrthancSTL"; |
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62 static const char* const ORTHANC_STL_MANUFACTURER = "ORTHANC^STL"; |
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63 static const uint16_t ORTHANC_STL_PRIVATE_GROUP = 0x4205u; |
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64 static const uint16_t ORTHANC_STL_CREATOR_ELEMENT = 0x0010u; |
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65 static const uint16_t ORTHANC_STL_NEXUS_ELEMENT = 0x1001u; |
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66 static const Orthanc::DicomTag DICOM_TAG_CREATOR_VERSION_UID(0x0008, 0x9123); |
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67 |
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68 /** |
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69 * Each version of the STL plugin must provide a different value for |
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70 * the CreatorVersionUID (0008,9123) tag. A new UID can be generated |
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71 * by typing: |
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72 * |
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73 * $ python -c 'import pydicom; print(pydicom.uid.generate_uid())' |
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74 * |
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75 **/ |
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76 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE = "1.2.826.0.1.3680043.8.498.90514926286349109728701975613711986292"; |
60 | 77 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_1_1 = "1.2.826.0.1.3680043.8.498.13468660186379895313063577332103681503"; |
68 | 78 static const char* const ORTHANC_STL_CREATOR_VERSION_UID_1_2 = "1.2.826.0.1.3680043.8.498.69380801008493335183088431949117714013"; |
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79 |
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80 static const char* const GetCreatorVersionUid(const std::string& version) |
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81 { |
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82 if (version == "mainline") |
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83 { |
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84 return ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE; |
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85 } |
60 | 86 else if (version == "1.1") |
87 { | |
88 return ORTHANC_STL_CREATOR_VERSION_UID_1_1; | |
89 } | |
68 | 90 else if (version == "1.2") |
91 { | |
92 return ORTHANC_STL_CREATOR_VERSION_UID_1_2; | |
93 } | |
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94 else |
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95 { |
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96 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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97 } |
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98 } |
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99 |
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100 static void FillOrthancExplorerCreatorVersionUid(std::map<std::string, std::string>& dictionary) |
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101 { |
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102 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE"] = ORTHANC_STL_CREATOR_VERSION_UID_MAINLINE; |
60 | 103 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_1_1"] = ORTHANC_STL_CREATOR_VERSION_UID_1_1; |
68 | 104 dictionary["ORTHANC_STL_CREATOR_VERSION_UID_1_2"] = ORTHANC_STL_CREATOR_VERSION_UID_1_2; |
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105 } |
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106 |
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107 #endif |
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108 |
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109 |
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110 // Forward declaration |
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111 void ReadStaticAsset(std::string& target, |
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112 const std::string& path); |
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113 |
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114 |
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115 /** |
38 | 116 * As the static assets are gzipped by the "EmbedStaticAssets.py" |
117 * script, we use a cache to maintain the uncompressed assets in order | |
118 * to avoid multiple gzip decodings. | |
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119 **/ |
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120 class ResourcesCache : public boost::noncopyable |
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121 { |
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122 private: |
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123 typedef std::map<std::string, std::string*> Content; |
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124 |
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125 boost::shared_mutex mutex_; |
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126 Content content_; |
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127 |
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128 public: |
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129 ~ResourcesCache() |
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130 { |
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131 for (Content::iterator it = content_.begin(); it != content_.end(); ++it) |
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132 { |
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133 assert(it->second != NULL); |
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134 delete it->second; |
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135 } |
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136 } |
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137 |
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138 void Answer(OrthancPluginRestOutput* output, |
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139 const std::string& path) |
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140 { |
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141 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path)); |
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142 |
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143 { |
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144 // Check whether the cache already contains the resource |
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145 boost::shared_lock<boost::shared_mutex> lock(mutex_); |
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146 |
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147 Content::const_iterator found = content_.find(path); |
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148 |
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149 if (found != content_.end()) |
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150 { |
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151 assert(found->second != NULL); |
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152 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str()); |
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153 return; |
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154 } |
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155 } |
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156 |
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157 // This resource has not been cached yet |
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158 |
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159 std::unique_ptr<std::string> item(new std::string); |
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160 ReadStaticAsset(*item, path); |
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161 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str()); |
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162 |
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163 { |
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164 // Store the resource into the cache |
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165 boost::unique_lock<boost::shared_mutex> lock(mutex_); |
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166 |
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167 if (content_.find(path) == content_.end()) |
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168 { |
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169 content_[path] = item.release(); |
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170 } |
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171 } |
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172 } |
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173 }; |
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174 |
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175 |
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176 static ResourcesCache cache_; |
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177 |
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178 void ServeFile(OrthancPluginRestOutput* output, |
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179 const char* url, |
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180 const OrthancPluginHttpRequest* request) |
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181 { |
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182 if (request->method != OrthancPluginHttpMethod_Get) |
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183 { |
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184 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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185 return; |
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186 } |
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187 |
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188 const std::string file = request->groups[0]; |
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189 |
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190 if (boost::starts_with(file, "basic-viewer/") || |
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191 boost::starts_with(file, "o3dv/")) |
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192 { |
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193 cache_.Answer(output, file); |
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194 } |
38 | 195 else |
196 { | |
197 Orthanc::EmbeddedResources::FileResourceId resourceId; | |
198 Orthanc::MimeType mimeType; | |
199 | |
200 if (file == "three.html") | |
201 { | |
202 resourceId = Orthanc::EmbeddedResources::THREE_HTML; | |
203 mimeType = Orthanc::MimeType_Html; | |
204 } | |
205 else if (file == "three.js") | |
206 { | |
207 resourceId = Orthanc::EmbeddedResources::THREE_JS; | |
208 mimeType = Orthanc::MimeType_JavaScript; | |
209 } | |
210 else if (file == "o3dv.html") | |
211 { | |
212 resourceId = Orthanc::EmbeddedResources::O3DV_HTML; | |
213 mimeType = Orthanc::MimeType_Html; | |
214 } | |
215 else if (file == "o3dv.js") | |
216 { | |
217 resourceId = Orthanc::EmbeddedResources::O3DV_JS; | |
218 mimeType = Orthanc::MimeType_JavaScript; | |
219 } | |
220 else | |
221 { | |
222 OrthancPluginSendHttpStatusCode(OrthancPlugins::GetGlobalContext(), output, 404); | |
223 return; | |
224 } | |
225 | |
226 std::string s; | |
227 Orthanc::EmbeddedResources::GetFileResource(s, resourceId); | |
228 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(mimeType)); | |
229 } | |
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230 } |
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231 |
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232 |
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233 |
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234 |
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235 #include <dcmtk/dcmdata/dcfilefo.h> |
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236 #include <dcmtk/dcmdata/dcsequen.h> |
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237 #include <dcmtk/dcmdata/dcuid.h> |
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238 |
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239 |
40 | 240 namespace |
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241 { |
40 | 242 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller |
243 { | |
244 private: | |
245 Orthanc::ImageAccessor& target_; | |
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246 |
40 | 247 public: |
248 explicit XorFiller(Orthanc::ImageAccessor& target) : | |
249 target_(target) | |
250 { | |
251 } | |
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252 |
40 | 253 virtual void Fill(int y, |
254 int x1, | |
255 int x2) ORTHANC_OVERRIDE | |
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256 { |
40 | 257 assert(x1 <= x2); |
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258 |
40 | 259 if (y >= 0 && |
260 y < static_cast<int>(target_.GetHeight())) | |
261 { | |
262 x1 = std::max(x1, 0); | |
263 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1); | |
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264 |
40 | 265 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1; |
266 | |
267 for (int i = x1; i <= x2; i++, p++) | |
268 { | |
269 *p = (*p ^ 0xff); | |
270 } | |
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271 } |
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272 } |
40 | 273 }; |
274 } | |
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275 |
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276 |
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277 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId) |
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278 { |
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279 std::string dicom; |
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280 |
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281 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false)) |
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282 { |
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283 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource); |
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284 } |
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285 else |
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286 { |
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287 return new Orthanc::ParsedDicomFile(dicom); |
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288 } |
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289 } |
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290 |
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291 |
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292 static void GetReferencedVolumeAxes(Vector3D& axisX, |
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293 Vector3D& axisY, |
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294 const StructureSet& structureSet) |
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295 { |
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296 // This is a rough guess for the X/Y axes |
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297 axisX = Vector3D(1, 0, 0); |
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298 axisY = Vector3D(0, 1, 0); |
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299 |
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300 // Look for one instance from the referenced volume |
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301 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid(); |
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302 |
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303 Json::Value response; |
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304 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false)) |
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305 { |
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306 if (response.type() != Json::arrayValue) |
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307 { |
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308 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); |
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309 } |
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310 |
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311 bool first = true; |
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312 |
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313 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++) |
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314 { |
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315 if (response[i].type() != Json::objectValue) |
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316 { |
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317 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol); |
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318 } |
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319 |
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320 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance") |
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321 { |
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322 if (first) |
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323 { |
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324 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID"); |
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325 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId)); |
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326 |
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327 std::string imageOrientation; |
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328 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT)) |
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329 { |
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330 std::vector<std::string> items; |
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331 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\'); |
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332 |
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333 double x1, x2, x3, y1, y2, y3; |
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334 |
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335 if (items.size() == 6 && |
33 | 336 STLToolbox::MyParseDouble(x1, items[0]) && |
337 STLToolbox::MyParseDouble(x2, items[1]) && | |
338 STLToolbox::MyParseDouble(x3, items[2]) && | |
339 STLToolbox::MyParseDouble(y1, items[3]) && | |
340 STLToolbox::MyParseDouble(y2, items[4]) && | |
341 STLToolbox::MyParseDouble(y3, items[5])) | |
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342 { |
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343 axisX = Vector3D(x1, x2, x3); |
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344 axisY = Vector3D(y1, y2, y3); |
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345 } |
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346 } |
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347 } |
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348 else |
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349 { |
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350 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError, |
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351 "Multiple instances with the same SOP Instance UID"); |
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352 } |
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353 } |
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354 } |
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355 } |
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356 } |
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357 |
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358 |
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359 static bool EncodeStructureSetMesh(std::string& stl, |
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360 const StructureSet& structureSet, |
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361 const StructureSetGeometry& geometry, |
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362 const std::set<std::string>& roiNames, |
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363 unsigned int resolution, |
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364 bool smooth) |
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365 { |
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366 if (resolution < 1 || |
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367 structureSet.GetPolygonsCount() < 1) |
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368 { |
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369 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange); |
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370 } |
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371 |
33 | 372 if (!STLToolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm())) |
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373 { |
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374 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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375 } |
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376 |
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377 Vector3D axisX, axisY; |
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378 GetReferencedVolumeAxes(axisX, axisY, structureSet); |
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379 |
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380 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY); |
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381 |
33 | 382 if (!STLToolbox::IsNear(1, axisX.ComputeNorm()) || |
383 !STLToolbox::IsNear(1, axisY.ComputeNorm()) || | |
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384 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal())) |
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385 { |
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386 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError); |
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387 } |
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388 |
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389 Extent2D extent; |
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390 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++) |
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391 { |
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392 structureSet.GetPolygon(i).Add(extent, axisX, axisY); |
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393 } |
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394 |
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395 const int depth = geometry.GetSlicesCount(); |
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396 |
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397 vtkNew<vtkImageData> volume; |
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398 volume->SetDimensions(resolution, resolution, depth); |
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399 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1); |
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400 |
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401 assert(sizeof(unsigned char) == 1); |
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402 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth); |
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403 |
30 | 404 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution); |
405 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution); | |
406 const double pixelSpacingZ = geometry.GetSlicesSpacing(); | |
407 | |
408 bool first = true; | |
409 | |
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410 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++) |
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411 { |
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412 const StructurePolygon& polygon = structureSet.GetPolygon(i); |
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413 if (roiNames.find(polygon.GetRoiName()) != roiNames.end()) |
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414 { |
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415 // This polygon corresponds to a ROI of interest |
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416 |
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417 size_t z; |
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418 if (geometry.LookupSliceIndex(z, polygon)) |
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419 { |
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420 std::vector<Orthanc::ImageProcessing::ImagePoint> points; |
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421 points.reserve(polygon.GetPointsCount()); |
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422 |
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423 for (size_t j = 0; j < polygon.GetPointsCount(); j++) |
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424 { |
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425 const Vector3D& point = polygon.GetPoint(j); |
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426 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution); |
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427 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution); |
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428 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)), |
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429 static_cast<int32_t>(std::floor(y)))); |
30 | 430 |
431 if (first) | |
432 { | |
433 first = false; | |
434 volume->SetOrigin(point.GetX() - x * pixelSpacingX, | |
435 point.GetY() - y * pixelSpacingY, | |
436 point.GetZ() - z * pixelSpacingZ); | |
437 } | |
29
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438 } |
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439 |
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440 Orthanc::ImageAccessor slice; |
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441 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */, |
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442 reinterpret_cast<uint8_t*>(volume->GetScalarPointer()) + z * resolution * resolution); |
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443 |
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444 XorFiller filler(slice); |
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445 Orthanc::ImageProcessing::FillPolygon(filler, points); |
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446 } |
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447 } |
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448 } |
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449 |
30 | 450 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ); |
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451 |
32 | 452 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth); |
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453 } |
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454 |
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455 |
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456 void ListStructures(OrthancPluginRestOutput* output, |
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457 const char* url, |
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458 const OrthancPluginHttpRequest* request) |
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459 { |
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460 if (request->method != OrthancPluginHttpMethod_Get) |
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461 { |
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462 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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463 return; |
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464 } |
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465 |
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466 const std::string instanceId(request->groups[0]); |
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467 |
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468 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
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469 |
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470 std::set<std::string> names; |
33 | 471 StructureSet::ListStructuresNames(names, *dicom); |
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472 |
3
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473 Json::Value answer = Json::arrayValue; |
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474 |
3
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475 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it) |
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476 { |
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477 answer.append(*it); |
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478 } |
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479 |
3
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480 std::string s = answer.toStyledString(); |
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481 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); |
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482 } |
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483 |
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484 |
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485 static void AddDefaultTagValue(Json::Value& target, |
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486 const Orthanc::DicomTag& tag, |
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487 const std::string& value) |
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488 { |
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489 if (!target.isMember(tag.Format())) |
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490 { |
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491 target[tag.Format()] = value; |
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492 } |
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493 } |
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494 |
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495 |
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496 static void AddDefaultTagValue(Json::Value& target, |
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497 const DcmTagKey& tag, |
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498 const std::string& value) |
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499 { |
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500 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value); |
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501 } |
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502 |
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503 |
7 | 504 static void CallCreateDicom(Json::Value& answer, |
505 const std::string& stl, | |
506 const Json::Value& body, | |
507 const std::string& parentStudy, | |
508 const std::string& defaultSeriesDescription, | |
509 const std::string& defaultFrameOfReferenceUid, | |
510 const std::string& defaultTitle) | |
511 { | |
512 static const char* const KEY_TAGS = "Tags"; | |
513 | |
514 Json::Value normalized = Json::objectValue; | |
515 | |
516 if (body.isMember(KEY_TAGS)) | |
517 { | |
518 const Json::Value& tags = body[KEY_TAGS]; | |
519 | |
520 if (tags.type() != Json::objectValue) | |
521 { | |
522 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object"); | |
523 } | |
524 | |
525 std::vector<std::string> keys = tags.getMemberNames(); | |
526 for (size_t i = 0; i < keys.size(); i++) | |
527 { | |
528 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]); | |
529 normalized[tag.Format()] = tags[keys[i]]; | |
530 } | |
531 } | |
532 | |
533 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format())) | |
534 { | |
535 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription; | |
536 } | |
537 | |
538 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1"); | |
539 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid); | |
540 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1"); | |
541 | |
542 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO"); | |
543 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION); | |
544 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle); | |
545 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin"); | |
546 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin"); | |
547 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, ""); | |
548 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION); | |
549 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, ""); | |
550 | |
551 std::string date, time; | |
552 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); | |
553 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time); | |
554 | |
555 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(), | |
556 DCM_MeasurementUnitsCodeSequence.getElement()); | |
557 | |
558 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format())) | |
559 { | |
560 Json::Value item; | |
561 item["CodeValue"] = "mm"; | |
562 item["CodingSchemeDesignator"] = "UCUM"; | |
563 item["CodeMeaning"] = defaultTitle; | |
564 | |
565 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item); | |
566 } | |
567 | |
568 std::string content; | |
569 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl); | |
570 | |
571 Json::Value create; | |
572 create["Content"] = content; | |
573 create["Parent"] = parentStudy; | |
574 create["Tags"] = normalized; | |
575 | |
576 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false)) | |
577 { | |
578 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL"); | |
579 } | |
580 } | |
581 | |
582 | |
583 void EncodeStructureSet(OrthancPluginRestOutput* output, | |
584 const char* url, | |
585 const OrthancPluginHttpRequest* request) | |
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586 { |
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587 static const char* const KEY_INSTANCE = "Instance"; |
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588 static const char* const KEY_RESOLUTION = "Resolution"; |
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589 static const char* const KEY_ROI_NAMES = "RoiNames"; |
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590 static const char* const KEY_SMOOTH = "Smooth"; |
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591 static const char* const KEY_STRICT = "Strict"; |
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592 |
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593 if (request->method != OrthancPluginHttpMethod_Post) |
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594 { |
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595 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST"); |
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596 return; |
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597 } |
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598 |
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599 Json::Value body; |
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600 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize)) |
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601 { |
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602 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
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603 } |
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604 |
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605 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE); |
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606 const bool smooth = (body.isMember(KEY_SMOOTH) ? |
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|
607 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) : |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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0
diff
changeset
|
608 true /* smooth by default */); |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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parents:
0
diff
changeset
|
609 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ? |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
610 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) : |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
611 256 /* default value */); |
28
410003c50b17
improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
25
diff
changeset
|
612 const bool strict = (body.isMember(KEY_STRICT) ? |
410003c50b17
improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
25
diff
changeset
|
613 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) : |
410003c50b17
improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
25
diff
changeset
|
614 true /* strict by default */); |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
615 |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
616 std::set<std::string> roiNames; |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
617 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES); |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
618 |
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
619 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
620 |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
621 StructureSet structureSet(*dicom); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
622 |
28
410003c50b17
improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
25
diff
changeset
|
623 StructureSetGeometry geometry(structureSet, strict); |
410003c50b17
improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
25
diff
changeset
|
624 |
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
625 std::string stl; |
28
410003c50b17
improved computation of RT-STRUCT geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
25
diff
changeset
|
626 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth)) |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
627 { |
8
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
628 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT"); |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
629 } |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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parents:
0
diff
changeset
|
630 else |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
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parents:
0
diff
changeset
|
631 { |
7 | 632 std::string seriesDescription; |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
633 |
7 | 634 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION)) |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
635 { |
7 | 636 seriesDescription += ": "; |
637 } | |
638 else | |
639 { | |
640 seriesDescription.clear(); | |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
641 } |
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
642 |
7 | 643 bool first = true; |
644 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it) | |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
645 { |
7 | 646 if (first) |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
647 { |
7 | 648 first = false; |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
649 } |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
650 else |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
651 { |
7 | 652 seriesDescription += ", "; |
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
653 } |
2
2bdb9acb7dcf
added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1
diff
changeset
|
654 |
7 | 655 seriesDescription += *it; |
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
656 } |
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
657 |
7 | 658 std::string frameOfReferenceUid; |
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
659 if (structureSet.HasFrameOfReferenceUid()) |
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
660 { |
7 | 661 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid(); |
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
662 } |
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
663 else |
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
664 { |
7 | 665 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance); |
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
666 } |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
667 |
7 | 668 Json::Value answer; |
669 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription, | |
670 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT"); | |
4
5ee4448a8ff8
generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3
diff
changeset
|
671 |
7 | 672 std::string s = answer.toStyledString(); |
673 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); | |
1
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
674 } |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
675 } |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
676 |
0f03a8a0bd6f
encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
0
diff
changeset
|
677 |
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
678 void ExtractStl(OrthancPluginRestOutput* output, |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
679 const char* url, |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
680 const OrthancPluginHttpRequest* request) |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
681 { |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
682 if (request->method != OrthancPluginHttpMethod_Get) |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
683 { |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
684 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
685 return; |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
686 } |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
687 |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
688 const std::string instanceId(request->groups[0]); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
689 |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
690 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId)); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
691 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset(); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
692 |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
693 std::string stl; |
33 | 694 if (STLToolbox::GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL || |
695 STLToolbox::GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage || | |
3
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
696 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
697 { |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
698 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
699 } |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
700 else |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
701 { |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
702 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
703 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL); |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
704 } |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
705 } |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
706 |
0fb06c6a6c87
added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
707 |
6 | 708 |
8
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
709 void EncodeNifti(OrthancPluginRestOutput* output, |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
710 const char* url, |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
711 const OrthancPluginHttpRequest* request) |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
712 { |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
713 static const char* const KEY_NIFTI = "Nifti"; |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
714 static const char* const KEY_RESOLUTION = "Resolution"; |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
715 static const char* const KEY_PARENT_STUDY = "ParentStudy"; |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
716 static const char* const KEY_SMOOTH = "Smooth"; |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
717 |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
718 if (request->method != OrthancPluginHttpMethod_Post) |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
719 { |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
720 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST"); |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
721 return; |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
722 } |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
723 |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
724 Json::Value body; |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
725 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize)) |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
726 { |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
727 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
728 } |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
729 |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
730 std::string mime, nifti; |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
731 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI))) |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
732 { |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
733 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file"); |
d1267c6c33e1
added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
7
diff
changeset
|
734 } |
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diff
changeset
|
735 |
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diff
changeset
|
736 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY); |
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737 const bool smooth = (body.isMember(KEY_SMOOTH) ? |
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diff
changeset
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738 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) : |
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diff
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|
739 true /* smooth by default */); |
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740 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ? |
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diff
changeset
|
741 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) : |
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diff
changeset
|
742 256 /* default value */); |
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diff
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743 |
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diff
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744 vtkNew<vtkImageData> volume; |
32 | 745 VTKToolbox::LoadNifti(volume.Get(), nifti); |
8
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diff
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746 |
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|
747 std::string stl; |
32 | 748 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth)) |
8
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diff
changeset
|
749 { |
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diff
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750 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI"); |
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diff
changeset
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751 } |
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diff
changeset
|
752 else |
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diff
changeset
|
753 { |
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diff
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|
754 const std::string title = "STL model generated from NIfTI"; |
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diff
changeset
|
755 |
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diff
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756 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance); |
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diff
changeset
|
757 |
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diff
changeset
|
758 Json::Value answer; |
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diff
changeset
|
759 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title); |
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diff
changeset
|
760 |
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diff
changeset
|
761 std::string s = answer.toStyledString(); |
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changeset
|
762 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON); |
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diff
changeset
|
763 } |
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diff
changeset
|
764 } |
d1267c6c33e1
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parents:
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diff
changeset
|
765 |
d1267c6c33e1
added route /stl/encode-nifti
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parents:
7
diff
changeset
|
766 |
46
9b2a2fcc9878
added option to disable Nexus support
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45
diff
changeset
|
767 #if ORTHANC_ENABLE_NEXUS == 1 |
9b2a2fcc9878
added option to disable Nexus support
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diff
changeset
|
768 |
45
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adding experimental support for nexus models
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diff
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|
769 void ServeNexusAssets(OrthancPluginRestOutput* output, |
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770 const char* url, |
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diff
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|
771 const OrthancPluginHttpRequest* request) |
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772 { |
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adding experimental support for nexus models
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|
773 if (request->method != OrthancPluginHttpMethod_Get) |
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|
774 { |
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adding experimental support for nexus models
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|
775 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
967f947014ac
adding experimental support for nexus models
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diff
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|
776 return; |
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diff
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|
777 } |
967f947014ac
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changeset
|
778 |
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changeset
|
779 const std::string file = request->groups[0]; |
64
5e11f5880e6d
simplified the embedding of Nexus viewer
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diff
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|
780 cache_.Answer(output, "nexus/" + file); |
45
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adding experimental support for nexus models
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diff
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|
781 } |
967f947014ac
adding experimental support for nexus models
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40
diff
changeset
|
782 |
967f947014ac
adding experimental support for nexus models
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40
diff
changeset
|
783 |
967f947014ac
adding experimental support for nexus models
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|
784 static Orthanc::MemoryStringCache nexusCache_; |
967f947014ac
adding experimental support for nexus models
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diff
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|
785 |
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adding experimental support for nexus models
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|
786 void ExtractNexusModel(OrthancPluginRestOutput* output, |
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adding experimental support for nexus models
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|
787 const char* url, |
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adding experimental support for nexus models
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diff
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|
788 const OrthancPluginHttpRequest* request) |
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adding experimental support for nexus models
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diff
changeset
|
789 { |
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adding experimental support for nexus models
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changeset
|
790 OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); |
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adding experimental support for nexus models
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diff
changeset
|
791 |
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adding experimental support for nexus models
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diff
changeset
|
792 if (request->method != OrthancPluginHttpMethod_Get) |
967f947014ac
adding experimental support for nexus models
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diff
changeset
|
793 { |
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adding experimental support for nexus models
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diff
changeset
|
794 OrthancPluginSendMethodNotAllowed(context, output, "GET"); |
967f947014ac
adding experimental support for nexus models
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|
795 return; |
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adding experimental support for nexus models
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diff
changeset
|
796 } |
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adding experimental support for nexus models
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40
diff
changeset
|
797 |
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adding experimental support for nexus models
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changeset
|
798 const std::string instanceId = request->groups[0]; |
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diff
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|
799 |
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adding experimental support for nexus models
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diff
changeset
|
800 std::string range; |
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adding experimental support for nexus models
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diff
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|
801 |
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adding experimental support for nexus models
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40
diff
changeset
|
802 for (uint32_t i = 0; i < request->headersCount; i++) |
967f947014ac
adding experimental support for nexus models
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diff
changeset
|
803 { |
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adding experimental support for nexus models
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diff
changeset
|
804 if (std::string(request->headersKeys[i]) == "range") |
967f947014ac
adding experimental support for nexus models
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40
diff
changeset
|
805 { |
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adding experimental support for nexus models
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diff
changeset
|
806 range = request->headersValues[i]; |
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adding experimental support for nexus models
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diff
changeset
|
807 } |
967f947014ac
adding experimental support for nexus models
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40
diff
changeset
|
808 } |
967f947014ac
adding experimental support for nexus models
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40
diff
changeset
|
809 |
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adding experimental support for nexus models
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diff
changeset
|
810 static const std::string BYTES = "bytes="; |
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|
811 |
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changeset
|
812 if (!boost::starts_with(range, BYTES)) |
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changeset
|
813 { |
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changeset
|
814 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
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adding experimental support for nexus models
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|
815 return; |
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changeset
|
816 } |
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diff
changeset
|
817 |
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changeset
|
818 std::vector<std::string> tokens; |
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819 Orthanc::Toolbox::TokenizeString(tokens, range.substr(BYTES.length()), '-'); |
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|
820 |
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changeset
|
821 uint64_t start, end; |
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|
822 |
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|
823 if (tokens.size() != 2 || |
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824 !Orthanc::SerializationToolbox::ParseUnsignedInteger64(start, tokens[0]) || |
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825 !Orthanc::SerializationToolbox::ParseUnsignedInteger64(end, tokens[1]) || |
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|
826 start < 0 || |
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|
827 start > end) |
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changeset
|
828 { |
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changeset
|
829 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
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changeset
|
830 return; |
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|
831 } |
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|
832 |
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changeset
|
833 uint64_t modelSize; |
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|
834 std::string part; |
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|
835 |
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|
836 #if 0 |
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|
837 { |
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|
838 // Use no cache |
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|
839 std::string model; |
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|
840 if (!OrthancPlugins::RestApiGetString(model, "/instances/" + instanceId + "/content/4205-1001", false)) |
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|
841 { |
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changeset
|
842 OrthancPluginSendHttpStatusCode(context, output, 404); |
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changeset
|
843 return; |
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changeset
|
844 } |
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changeset
|
845 |
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|
846 modelSize = model.size(); |
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changeset
|
847 |
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changeset
|
848 if (end >= modelSize) |
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changeset
|
849 { |
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changeset
|
850 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
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|
851 return; |
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changeset
|
852 } |
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diff
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|
853 |
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|
854 part = model.substr(start, end - start + 1); |
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|
855 } |
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|
856 #else |
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diff
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|
857 { |
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adding experimental support for nexus models
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diff
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|
858 Orthanc::MemoryStringCache::Accessor accessor(nexusCache_); |
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40
diff
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|
859 |
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adding experimental support for nexus models
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diff
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|
860 std::string model; |
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diff
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|
861 if (!accessor.Fetch(model, instanceId)) |
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diff
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|
862 { |
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40
diff
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|
863 if (OrthancPlugins::RestApiGetString(model, "/instances/" + instanceId + "/content/4205-1001", false)) |
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diff
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|
864 { |
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adding experimental support for nexus models
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diff
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|
865 accessor.Add(instanceId, model); |
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40
diff
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|
866 } |
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diff
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|
867 else |
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40
diff
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|
868 { |
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40
diff
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|
869 OrthancPluginSendHttpStatusCode(context, output, 404); |
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40
diff
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|
870 return; |
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diff
changeset
|
871 } |
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diff
changeset
|
872 } |
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diff
changeset
|
873 |
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|
874 modelSize = model.size(); |
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40
diff
changeset
|
875 |
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40
diff
changeset
|
876 if (end >= modelSize) |
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40
diff
changeset
|
877 { |
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40
diff
changeset
|
878 OrthancPluginSendHttpStatusCode(context, output, 416); // Range not satisfiable |
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diff
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|
879 return; |
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40
diff
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|
880 } |
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diff
changeset
|
881 |
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|
882 part = model.substr(start, end - start + 1); |
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diff
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|
883 } |
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diff
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|
884 #endif |
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diff
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|
885 |
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diff
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|
886 std::string s = ("bytes " + boost::lexical_cast<std::string>(start) + "-" + |
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diff
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|
887 boost::lexical_cast<std::string>(end) + "/" + |
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|
888 boost::lexical_cast<std::string>(modelSize)); |
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diff
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|
889 OrthancPluginSetHttpHeader(context, output, "Content-Range", s.c_str()); |
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diff
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|
890 |
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diff
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|
891 s = boost::lexical_cast<std::string>(part.size()); |
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|
892 OrthancPluginSetHttpHeader(context, output, "Content-Length", s.c_str()); |
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|
893 OrthancPluginSetHttpHeader(context, output, "Content-Type", "application/octet-stream"); |
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diff
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|
894 |
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diff
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|
895 OrthancPluginSendHttpStatus(context, output, 206 /* partial content */, part.c_str(), part.size()); |
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diff
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|
896 } |
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diff
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|
897 |
50
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diff
changeset
|
898 |
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diff
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|
899 void DicomizeNexusModel(OrthancPluginRestOutput* output, |
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|
900 const char* url, |
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|
901 const OrthancPluginHttpRequest* request) |
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|
902 { |
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diff
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|
903 static const char* KEY_CONTENT = "Content"; |
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|
904 static const char* KEY_PARENT = "Parent"; |
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diff
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|
905 static const char* KEY_TAGS = "Tags"; |
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|
906 static const char* KEY_PRIVATE_CREATOR = "PrivateCreator"; |
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diff
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|
907 |
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|
908 OrthancPluginContext* context = OrthancPlugins::GetGlobalContext(); |
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diff
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|
909 |
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|
910 if (request->method != OrthancPluginHttpMethod_Post) |
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diff
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|
911 { |
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|
912 OrthancPluginSendMethodNotAllowed(context, output, "POST"); |
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diff
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|
913 return; |
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diff
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|
914 } |
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diff
changeset
|
915 |
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diff
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|
916 Json::Value body; |
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diff
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|
917 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize) || |
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|
918 body.type() != Json::objectValue || |
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|
919 !body.isMember(KEY_TAGS) || |
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diff
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|
920 body[KEY_TAGS].type() != Json::objectValue) |
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diff
changeset
|
921 { |
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diff
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|
922 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
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|
923 } |
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diff
changeset
|
924 |
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diff
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|
925 if (!body.isMember(KEY_CONTENT) || |
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diff
changeset
|
926 body[KEY_CONTENT].type() != Json::stringValue) |
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diff
changeset
|
927 { |
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diff
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|
928 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, |
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diff
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|
929 "POST body missing string field \"" + std::string(KEY_CONTENT) + "\""); |
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diff
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|
930 } |
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diff
changeset
|
931 |
55
41e3b79e7f4b
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diff
changeset
|
932 std::string decoded; |
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diff
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|
933 Orthanc::Toolbox::DecodeBase64(decoded, body[KEY_CONTENT].asString()); |
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53
diff
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|
934 |
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53
diff
changeset
|
935 if (decoded.size() < 4 || |
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diff
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|
936 decoded[0] != 0x20 || |
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diff
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|
937 decoded[1] != 0x73 || |
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diff
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|
938 decoded[2] != 0x78 || |
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diff
changeset
|
939 decoded[3] != 0x4e) |
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diff
changeset
|
940 { |
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diff
changeset
|
941 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, |
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diff
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|
942 "This is not a valid Nexus file, its magic header is incorrect"); |
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diff
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|
943 } |
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diff
changeset
|
944 |
50
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diff
changeset
|
945 Json::Value creationBody = Json::objectValue; |
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diff
changeset
|
946 |
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changeset
|
947 creationBody[KEY_TAGS] = body[KEY_TAGS]; |
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|
948 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_MANUFACTURER.Format()] = ORTHANC_STL_MANUFACTURER; |
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|
949 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_SOP_CLASS_UID.Format()] = "1.2.840.10008.5.1.4.1.1.66"; |
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|
950 creationBody[KEY_TAGS][Orthanc::DICOM_TAG_MODALITY.Format()] = "OT"; |
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diff
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|
951 creationBody[KEY_TAGS][DICOM_TAG_CREATOR_VERSION_UID.Format()] = GetCreatorVersionUid(ORTHANC_STL_VERSION); |
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diff
changeset
|
952 creationBody[KEY_TAGS][Orthanc::DicomTag(ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_CREATOR_ELEMENT).Format()] = ORTHANC_STL_PRIVATE_CREATOR; |
51 | 953 creationBody[KEY_TAGS][Orthanc::DicomTag(ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_NEXUS_ELEMENT).Format()] = |
954 "data:application/octet-stream;base64," + body[KEY_CONTENT].asString(); | |
50
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diff
changeset
|
955 creationBody[KEY_PRIVATE_CREATOR] = ORTHANC_STL_PRIVATE_CREATOR; |
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diff
changeset
|
956 |
bf4c4e4e7198
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diff
changeset
|
957 if (body.isMember(KEY_PARENT)) |
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diff
changeset
|
958 { |
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diff
changeset
|
959 creationBody[KEY_PARENT] = body[KEY_PARENT]; |
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diff
changeset
|
960 } |
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diff
changeset
|
961 |
bf4c4e4e7198
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diff
changeset
|
962 std::string bodyString; |
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diff
changeset
|
963 Orthanc::Toolbox::WriteFastJson(bodyString, creationBody); |
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diff
changeset
|
964 |
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965 std::string result; |
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966 if (OrthancPlugins::RestApiPost(result, "/tools/create-dicom", |
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967 bodyString.empty() ? NULL : bodyString.c_str(), |
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968 bodyString.size(), false)) |
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969 { |
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970 OrthancPluginAnswerBuffer(context, output, result.empty() ? NULL : result.c_str(), |
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971 result.size(), "application/json"); |
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972 } |
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973 else |
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974 { |
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975 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest); |
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976 } |
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977 } |
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978 |
46
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979 #endif |
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980 |
45
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981 |
62
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982 #if ORTHANC_ENABLE_3DHOP == 1 |
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983 |
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984 void Serve3DHOPAssets(OrthancPluginRestOutput* output, |
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985 const char* url, |
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986 const OrthancPluginHttpRequest* request) |
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987 { |
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988 if (request->method != OrthancPluginHttpMethod_Get) |
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989 { |
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990 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET"); |
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991 return; |
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992 } |
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993 |
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994 const std::string file = request->groups[0]; |
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995 cache_.Answer(output, "3dhop/" + file); |
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996 } |
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997 |
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998 #endif |
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999 |
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1000 |
0
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1001 extern "C" |
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1002 { |
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1003 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context) |
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1004 { |
47 | 1005 OrthancPlugins::SetGlobalContext(context, ORTHANC_PLUGIN_NAME); |
0
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1006 |
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1007 /* Check the version of the Orthanc core */ |
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1008 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0) |
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1009 { |
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1010 char info[1024]; |
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1011 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin", |
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1012 OrthancPlugins::GetGlobalContext()->orthancVersion, |
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1013 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, |
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1014 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, |
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1015 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); |
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1016 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info); |
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1017 return -1; |
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1018 } |
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1019 |
47 | 1020 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 12, 4) |
1021 Orthanc::Logging::InitializePluginContext(context, ORTHANC_PLUGIN_NAME); | |
1022 #elif ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2) | |
0
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1023 Orthanc::Logging::InitializePluginContext(context); |
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1024 #else |
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1025 Orthanc::Logging::Initialize(context); |
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1026 #endif |
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1027 |
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1028 Orthanc::InitializeFramework("", false); |
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1029 |
52
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1030 const bool hasCreateDicomStl = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1); |
0
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1031 |
52
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1032 if (!hasCreateDicomStl) |
0
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1033 { |
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1034 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion) |
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1035 << ") is insufficient to create DICOM STL, it should be above 1.12.1"; |
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1036 } |
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1037 |
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|
1038 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc."); |
0
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1039 |
1
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1040 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true); |
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1041 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true); |
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1042 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true); |
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1043 |
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1044 if (hasCreateDicomStl) |
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1045 { |
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1046 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true); |
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1047 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true); |
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1048 } |
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1049 |
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1050 OrthancPlugins::OrthancConfiguration globalConfiguration; |
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1051 OrthancPlugins::OrthancConfiguration configuration; |
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1052 globalConfiguration.GetSection(configuration, "STL"); |
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1053 |
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1054 #if ORTHANC_ENABLE_NEXUS == 1 |
52
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1055 const bool enableNexus = configuration.GetBooleanValue("EnableNexus", false); |
50
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1056 |
52
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1057 if (enableNexus) |
50
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1058 { |
52
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1059 LOG(INFO) << "Support for Nexus is enabled"; |
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1060 nexusCache_.SetMaximumSize(512 * 1024 * 1024); // Cache of 512MB for Nexus |
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1061 OrthancPlugins::RegisterRestCallback<ExtractNexusModel>("/instances/([0-9a-f-]+)/nexus", true); |
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1062 OrthancPlugins::RegisterRestCallback<ServeNexusAssets>("/stl/nexus/(.*)", true); |
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|
1063 |
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1064 #if ORTHANC_ENABLE_3DHOP == 1 |
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1065 OrthancPlugins::RegisterRestCallback<Serve3DHOPAssets>("/stl/3dhop/(.*)", true); |
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1066 |
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|
1067 /** |
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|
1068 * The 3DHOP viewer only supports ".nxs", ".nxz", and ".ply" extensions, |
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1069 * as can be seen in the "minimal/js/presenter.js" file. Furthermore, it |
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1070 * requires the extension to be part of the URL. |
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1071 **/ |
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1072 OrthancPlugins::RegisterRestCallback<ExtractNexusModel>("/stl/3dhop-instances/([0-9a-f-]+).nxz", true); |
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1073 #endif |
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1074 |
52
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1075 const bool hasCreateNexus_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 9, 4); |
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1076 |
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1077 if (hasCreateNexus_) |
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1078 { |
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1079 OrthancPlugins::RegisterRestCallback<DicomizeNexusModel>("/stl/create-nexus", true); |
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1080 |
52
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1081 if (OrthancPluginRegisterPrivateDictionaryTag( |
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1082 context, ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_CREATOR_ELEMENT, OrthancPluginValueRepresentation_LO, |
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1083 "PrivateCreator", 1, 1, ORTHANC_STL_PRIVATE_CREATOR) != OrthancPluginErrorCode_Success || |
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1084 OrthancPluginRegisterPrivateDictionaryTag( |
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1085 context, ORTHANC_STL_PRIVATE_GROUP, ORTHANC_STL_NEXUS_ELEMENT, OrthancPluginValueRepresentation_OB, |
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1086 "NexusData", 1, 1, ORTHANC_STL_PRIVATE_CREATOR) != OrthancPluginErrorCode_Success) |
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1087 { |
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1088 LOG(ERROR) << "Cannot register the private DICOM tags for handling Nexus"; |
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1089 } |
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1090 } |
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1091 else |
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1092 { |
52
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1093 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion) |
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1094 << ") is insufficient to create DICOM-ize Nexus models, it should be above 1.9.4"; |
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1095 } |
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1096 } |
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1097 else |
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1098 { |
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1099 LOG(INFO) << "Support for Nexus is disabled"; |
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1100 } |
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1101 #else |
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1102 const bool enableNexus = false; |
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1103 #endif |
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1104 |
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1105 // Extend the default Orthanc Explorer with custom JavaScript for STL |
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1106 std::string explorer; |
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1107 |
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1108 { |
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1109 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER); |
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1110 |
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1111 std::map<std::string, std::string> dictionary; |
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1112 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl ? "true" : "false"); |
40 | 1113 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("EnableNIfTI", false) ? "true" : "false"); |
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1114 dictionary["IS_NEXUS_ENABLED"] = (enableNexus ? "true" : "false"); |
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1115 dictionary["IS_3DHOP_ENABLED"] = ((ORTHANC_ENABLE_3DHOP == 1) ? "true" : "false"); |
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1116 FillOrthancExplorerCreatorVersionUid(dictionary); |
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1117 |
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1118 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary); |
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1119 |
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1120 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer); |
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1121 } |
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1122 |
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1123 return 0; |
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1124 } |
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1125 |
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1126 |
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1127 ORTHANC_PLUGINS_API void OrthancPluginFinalize() |
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1128 { |
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1129 Orthanc::FinalizeFramework(); |
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1130 } |
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1131 |
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1132 |
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1133 ORTHANC_PLUGINS_API const char* OrthancPluginGetName() |
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1134 { |
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1135 return ORTHANC_PLUGIN_NAME; |
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1136 } |
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1137 |
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1138 |
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1139 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() |
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1140 { |
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1141 return ORTHANC_STL_VERSION; |
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1142 } |
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1143 } |