orthanc-stl: Sources/Plugin.cpp annotate

annotate Sources/Plugin.cpp @ 38:970994058acd

building O3DV

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Fri, 05 Apr 2024 08:19:54 +0200
parents	13698d34e059
children	8a1daa321afe

rev	line source
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
24 dd0cd39e6259 update year to 2024 Sebastien Jodogne <s.jodogne@gmail.com> parents: 8 diff changeset	2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	3 * SPDX-License-Identifier: GPL-3.0-or-later
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	4 */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	5
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 /**
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * STL plugin for Orthanc
24 dd0cd39e6259 update year to 2024 Sebastien Jodogne <s.jodogne@gmail.com> parents: 8 diff changeset	8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	9 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	10 * This program is free software: you can redistribute it and/or
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 * modify it under the terms of the GNU General Public License as
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 * published by the Free Software Foundation, either version 3 of the
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * License, or (at your option) any later version.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	14 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	15 * This program is distributed in the hope that it will be useful, but
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	16 * WITHOUT ANY WARRANTY; without even the implied warranty of
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	18 * General Public License for more details.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	19 *
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20 * You should have received a copy of the GNU General Public License
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	23
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	24
35 ee3bc8f7df5b reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 34 diff changeset	25 #include "StructureSetGeometry.h"
ee3bc8f7df5b reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 34 diff changeset	26 #include "StructureSet.h"
34 bee2017f3088 fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 33 diff changeset	27 #include "STLToolbox.h"
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	28 #include "StructurePolygon.h"
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	29 #include "VTKToolbox.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	30 #include "Vector3D.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	31 #include "Toolbox.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	32 #include "Extent2D.h"
976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	33
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	34 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	35
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	36 #include <EmbeddedResources.h>
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	37
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	38 #include <DicomFormat/DicomInstanceHasher.h>
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	39 #include <DicomParsing/FromDcmtkBridge.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	40 #include <DicomParsing/ParsedDicomFile.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	41 #include <Images/ImageProcessing.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	42 #include <Logging.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	43 #include <OrthancFramework.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	44 #include <SerializationToolbox.h>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	45 #include <SystemToolbox.h>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	46
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	47 #include <vtkNew.h>
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	48
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	49 #include <boost/algorithm/string.hpp>
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	50 #include <boost/thread/shared_mutex.hpp>
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	51
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	52 #define ORTHANC_PLUGIN_NAME "stl"
5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	53
6 c02d12eb34d4 added LoadNifti() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4 diff changeset	54
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	55 // Forward declaration
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	56 void ReadStaticAsset(std::string& target,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	57 const std::string& path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	58
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	59
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	60 /**
38 970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	61 * As the static assets are gzipped by the "EmbedStaticAssets.py"
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	62 * script, we use a cache to maintain the uncompressed assets in order
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	63 * to avoid multiple gzip decodings.
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	64 **/
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	65 class ResourcesCache : public boost::noncopyable
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	66 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	67 private:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	68 typedef std::map<std::string, std::string*> Content;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	69
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	70 boost::shared_mutex mutex_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	71 Content content_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	72
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	73 public:
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	74 ~ResourcesCache()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	75 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	76 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	77 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	78 assert(it->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	79 delete it->second;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	80 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	81 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	82
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	83 void Answer(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	84 const std::string& path)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	85 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	86 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	87
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	88 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	89 // Check whether the cache already contains the resource
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	90 boost::shared_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	91
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	92 Content::const_iterator found = content_.find(path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	93
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	94 if (found != content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	95 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	96 assert(found->second != NULL);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	97 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	98 return;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	99 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	100 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	101
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	102 // This resource has not been cached yet
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	103
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	104 std::unique_ptr<std::string> item(new std::string);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	105 ReadStaticAsset(*item, path);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	106 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	107
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	108 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	109 // Store the resource into the cache
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	110 boost::unique_lock<boost::shared_mutex> lock(mutex_);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	111
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	112 if (content_.find(path) == content_.end())
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	113 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	114 content_[path] = item.release();
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	115 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	116 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	117 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	118 };
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	119
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	120
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	121 static ResourcesCache cache_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	122 static bool hasCreateDicomStl_;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	123
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	124 void ServeFile(OrthancPluginRestOutput* output,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	125 const char* url,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	126 const OrthancPluginHttpRequest* request)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	127 {
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	128 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	129 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	130 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	131 return;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	132 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	133
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	134 std::string file = request->groups[0];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	135
38 970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	136 if (boost::starts_with(file, "libs/"))
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	137 {
36 13698d34e059 preparing to include O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 35 diff changeset	138 cache_.Answer(output, file.substr(5));
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	139 }
38 970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	140 else
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	141 {
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	142 Orthanc::EmbeddedResources::FileResourceId resourceId;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	143 Orthanc::MimeType mimeType;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	144
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	145 if (file == "three.html")
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	146 {
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	147 resourceId = Orthanc::EmbeddedResources::THREE_HTML;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	148 mimeType = Orthanc::MimeType_Html;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	149 }
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	150 else if (file == "three.js")
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	151 {
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	152 resourceId = Orthanc::EmbeddedResources::THREE_JS;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	153 mimeType = Orthanc::MimeType_JavaScript;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	154 }
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	155 else if (file == "o3dv.html")
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	156 {
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	157 resourceId = Orthanc::EmbeddedResources::O3DV_HTML;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	158 mimeType = Orthanc::MimeType_Html;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	159 }
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	160 else if (file == "o3dv.js")
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	161 {
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	162 resourceId = Orthanc::EmbeddedResources::O3DV_JS;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	163 mimeType = Orthanc::MimeType_JavaScript;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	164 }
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	165 else
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	166 {
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	167 OrthancPluginSendHttpStatusCode(OrthancPlugins::GetGlobalContext(), output, 404);
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	168 return;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	169 }
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	170
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	171 std::string s;
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	172 Orthanc::EmbeddedResources::GetFileResource(s, resourceId);
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	173 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(mimeType));
970994058acd building O3DV Sebastien Jodogne <s.jodogne@gmail.com> parents: 36 diff changeset	174 }
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	175 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	176
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	177
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	178
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	179
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	180 #include <dcmtk/dcmdata/dcfilefo.h>
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	181 #include <dcmtk/dcmdata/dcsequen.h>
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	182 #include <dcmtk/dcmdata/dcuid.h>
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	183
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	184
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	185 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	186 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	187 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	188 Orthanc::ImageAccessor& target_;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	189
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	190 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	191 XorFiller(Orthanc::ImageAccessor& target) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	192 target_(target)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	193 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	194 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	195
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	196 virtual void Fill(int y,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	197 int x1,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	198 int x2) ORTHANC_OVERRIDE
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	199 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	200 assert(x1 <= x2);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	201
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	202 if (y >= 0 &&
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	203 y < static_cast<int>(target_.GetHeight()))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	204 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	205 x1 = std::max(x1, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	206 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	207
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	208 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	209
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	210 for (int i = x1; i <= x2; i++, p++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	211 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	212 p = (p ^ 0xff);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	213 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	214 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	215 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	216 };
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	217
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	218
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	219 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	220 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	221 std::string dicom;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	222
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	223 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	224 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	225 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	226 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	227 else
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	228 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	229 return new Orthanc::ParsedDicomFile(dicom);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	230 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	231 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	232
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	233
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	234 static void GetReferencedVolumeAxes(Vector3D& axisX,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	235 Vector3D& axisY,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	236 const StructureSet& structureSet)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	237 {
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	238 // This is a rough guess for the X/Y axes
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	239 axisX = Vector3D(1, 0, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	240 axisY = Vector3D(0, 1, 0);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	241
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	242 // Look for one instance from the referenced volume
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	243 const std::string& sopInstanceUid = structureSet.GetPolygon(0).GetReferencedSopInstanceUid();
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	244
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	245 Json::Value response;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	246 if (OrthancPlugins::RestApiPost(response, "/tools/lookup", sopInstanceUid, false))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	247 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	248 if (response.type() != Json::arrayValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	249 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	250 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	251 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	252
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	253 bool first = true;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	254
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	255 for (Json::Value::ArrayIndex i = 0; i < response.size(); i++)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	256 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	257 if (response[i].type() != Json::objectValue)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	258 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	259 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	260 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	261
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	262 if (Orthanc::SerializationToolbox::ReadString(response[i], "Type") == "Instance")
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	263 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	264 if (first)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	265 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	266 const std::string& instanceId = Orthanc::SerializationToolbox::ReadString(response[i], "ID");
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	267 std::unique_ptr<Orthanc::ParsedDicomFile> reference(LoadInstance(instanceId));
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	268
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	269 std::string imageOrientation;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	270 if (reference->GetTagValue(imageOrientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	271 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	272 std::vector<std::string> items;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	273 Orthanc::Toolbox::TokenizeString(items, imageOrientation, '\\');
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	274
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	275 double x1, x2, x3, y1, y2, y3;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	276
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	277 if (items.size() == 6 &&
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	278 STLToolbox::MyParseDouble(x1, items[0]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	279 STLToolbox::MyParseDouble(x2, items[1]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	280 STLToolbox::MyParseDouble(x3, items[2]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	281 STLToolbox::MyParseDouble(y1, items[3]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	282 STLToolbox::MyParseDouble(y2, items[4]) &&
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	283 STLToolbox::MyParseDouble(y3, items[5]))
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	284 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	285 axisX = Vector3D(x1, x2, x3);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	286 axisY = Vector3D(y1, y2, y3);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	287 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	288 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	289 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	290 else
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	291 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	292 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	293 "Multiple instances with the same SOP Instance UID");
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	294 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	295 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	296 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	297 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	298 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	299
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	300
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	301 static bool EncodeStructureSetMesh(std::string& stl,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	302 const StructureSet& structureSet,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	303 const StructureSetGeometry& geometry,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	304 const std::set<std::string>& roiNames,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	305 unsigned int resolution,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	306 bool smooth)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	307 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	308 if (resolution < 1 \|\|
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	309 structureSet.GetPolygonsCount() < 1)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	310 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	311 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	312 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	313
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	314 if (!STLToolbox::IsNear(1, geometry.GetSlicesNormal().ComputeNorm()))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	315 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	316 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	317 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	318
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	319 Vector3D axisX, axisY;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	320 GetReferencedVolumeAxes(axisX, axisY, structureSet);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	321
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	322 Vector3D axisZ = Vector3D::CrossProduct(axisX, axisY);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	323
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	324 if (!STLToolbox::IsNear(1, axisX.ComputeNorm()) \|\|
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	325 !STLToolbox::IsNear(1, axisY.ComputeNorm()) \|\|
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	326 !Vector3D::AreParallel(axisZ, geometry.GetSlicesNormal()))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	327 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	328 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	329 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	330
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	331 Extent2D extent;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	332 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	333 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	334 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	335 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	336
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	337 const int depth = geometry.GetSlicesCount();
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	338
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	339 vtkNew<vtkImageData> volume;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	340 volume->SetDimensions(resolution, resolution, depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	341 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	342
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	343 assert(sizeof(unsigned char) == 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	344 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	345
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	346 const double pixelSpacingX = extent.GetWidth() / static_cast<double>(resolution);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	347 const double pixelSpacingY = extent.GetHeight() / static_cast<double>(resolution);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	348 const double pixelSpacingZ = geometry.GetSlicesSpacing();
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	349
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	350 bool first = true;
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	351
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	352 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	353 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	354 const StructurePolygon& polygon = structureSet.GetPolygon(i);
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	355 if (roiNames.find(polygon.GetRoiName()) != roiNames.end())
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	356 {
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	357 // This polygon corresponds to a ROI of interest
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	358
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	359 size_t z;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	360 if (geometry.LookupSliceIndex(z, polygon))
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	361 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	362 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	363 points.reserve(polygon.GetPointsCount());
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	364
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	365 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	366 {
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	367 const Vector3D& point = polygon.GetPoint(j);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	368 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	369 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	370 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	371 static_cast<int32_t>(std::floor(y))));
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	372
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	373 if (first)
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	374 {
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	375 first = false;
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	376 volume->SetOrigin(point.GetX() - x * pixelSpacingX,
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	377 point.GetY() - y * pixelSpacingY,
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	378 point.GetZ() - z * pixelSpacingZ);
3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	379 }
29 62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	380 }
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	381
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	382 Orthanc::ImageAccessor slice;
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	383 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	384 reinterpret_cast<uint8_t>(volume->GetScalarPointer()) + z resolution * resolution);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	385
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	386 XorFiller filler(slice);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	387 Orthanc::ImageProcessing::FillPolygon(filler, points);
62abf3c523f9 big endian support, retrieve axes from referenced volume Sebastien Jodogne <s.jodogne@gmail.com> parents: 28 diff changeset	388 }
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	389 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	390 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	391
30 3570c23764d4 set stl origin Sebastien Jodogne <s.jodogne@gmail.com> parents: 29 diff changeset	392 volume->SetSpacing(pixelSpacingX, pixelSpacingY, pixelSpacingZ);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	393
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	394 return VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	395 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	396
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	397
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	398 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	399 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	400 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	401 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	402 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	403 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	404 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	405 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	406 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	407
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	408 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	409
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	410 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	411
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	412 std::set<std::string> names;
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	413 StructureSet::ListStructuresNames(names, *dicom);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	414
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	415 Json::Value answer = Json::arrayValue;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	416
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	417 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	418 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	419 answer.append(*it);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	420 }
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	421
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	422 std::string s = answer.toStyledString();
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	423 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	424 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	425
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	426
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	427 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	428 const Orthanc::DicomTag& tag,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	429 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	430 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	431 if (!target.isMember(tag.Format()))
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	432 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	433 target[tag.Format()] = value;
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	434 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	435 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	436
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	437
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	438 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	439 const DcmTagKey& tag,
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	440 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	441 {
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	442 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value);
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	443 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	444
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	445
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	446 static void CallCreateDicom(Json::Value& answer,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	447 const std::string& stl,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	448 const Json::Value& body,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	449 const std::string& parentStudy,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	450 const std::string& defaultSeriesDescription,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	451 const std::string& defaultFrameOfReferenceUid,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	452 const std::string& defaultTitle)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	453 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	454 static const char* const KEY_TAGS = "Tags";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	455
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	456 Json::Value normalized = Json::objectValue;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	457
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	458 if (body.isMember(KEY_TAGS))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	459 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	460 const Json::Value& tags = body[KEY_TAGS];
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	461
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	462 if (tags.type() != Json::objectValue)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	463 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	464 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	465 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	466
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	467 std::vector<std::string> keys = tags.getMemberNames();
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	468 for (size_t i = 0; i < keys.size(); i++)
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	469 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	470 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	471 normalized[tag.Format()] = tags[keys[i]];
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	472 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	473 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	474
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	475 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	476 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	477 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	478 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	479
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	480 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	481 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	482 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	483
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	484 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	485 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	486 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	487 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	488 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	489 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, "");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	490 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	491 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, "");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	492
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	493 std::string date, time;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	494 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	495 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	496
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	497 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(),
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	498 DCM_MeasurementUnitsCodeSequence.getElement());
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	499
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	500 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format()))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	501 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	502 Json::Value item;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	503 item["CodeValue"] = "mm";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	504 item["CodingSchemeDesignator"] = "UCUM";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	505 item["CodeMeaning"] = defaultTitle;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	506
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	507 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	508 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	509
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	510 std::string content;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	511 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl);
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	512
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	513 Json::Value create;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	514 create["Content"] = content;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	515 create["Parent"] = parentStudy;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	516 create["Tags"] = normalized;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	517
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	518 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	519 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	520 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	521 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	522 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	523
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	524
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	525 void EncodeStructureSet(OrthancPluginRestOutput* output,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	526 const char* url,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	527 const OrthancPluginHttpRequest* request)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	528 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	529 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	530 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	531 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	532 static const char* const KEY_SMOOTH = "Smooth";
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	533 static const char* const KEY_STRICT = "Strict";
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	534
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	535 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	536 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	537 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	538 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	539 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	540
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	541 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	542 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	543 {
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	544 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	545 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	546
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	547 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	548 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	549 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	550 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	551 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	552 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	553 256 /* default value */);
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	554 const bool strict = (body.isMember(KEY_STRICT) ?
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	555 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_STRICT) :
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	556 true /* strict by default */);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	557
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	558 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	559 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	560
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	561 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	562
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	563 StructureSet structureSet(*dicom);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	564
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	565 StructureSetGeometry geometry(structureSet, strict);
410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	566
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	567 std::string stl;
28 410003c50b17 improved computation of RT-STRUCT geometry Sebastien Jodogne <s.jodogne@gmail.com> parents: 25 diff changeset	568 if (!EncodeStructureSetMesh(stl, structureSet, geometry, roiNames, resolution, smooth))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	569 {
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	570 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT");
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	571 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	572 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	573 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	574 std::string seriesDescription;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	575
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	576 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	577 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	578 seriesDescription += ": ";
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	579 }
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	580 else
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	581 {
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	582 seriesDescription.clear();
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	583 }
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	584
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	585 bool first = true;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	586 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	587 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	588 if (first)
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	589 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	590 first = false;
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	591 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	592 else
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	593 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	594 seriesDescription += ", ";
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	595 }
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	596
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	597 seriesDescription += *it;
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	598 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	599
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	600 std::string frameOfReferenceUid;
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	601 if (structureSet.HasFrameOfReferenceUid())
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	602 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	603 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid();
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	604 }
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	605 else
5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	606 {
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	607 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	608 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	609
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	610 Json::Value answer;
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	611 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription,
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	612 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT");
4 5ee4448a8ff8 generated STL pass dciodvfy Sebastien Jodogne <s.jodogne@gmail.com> parents: 3 diff changeset	613
7 e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	614 std::string s = answer.toStyledString();
e3e59de705f6 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 6 diff changeset	615 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	616 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	617 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	618
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	619
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	620 void ExtractStl(OrthancPluginRestOutput* output,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	621 const char* url,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	622 const OrthancPluginHttpRequest* request)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	623 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	624 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	625 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	626 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	627 return;
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	628 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	629
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	630 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	631
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	632 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	633 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset();
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	634
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	635 std::string stl;
33 2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	636 if (STLToolbox::GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL \|\|
2460b376d3f7 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 32 diff changeset	637 STLToolbox::GetStringValue(dataset, DCM_SOPClassUID) != UID_EncapsulatedSTLStorage \|\|
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	638 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT))
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	639 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	640 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	641 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	642 else
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	643 {
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	644 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	645 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL);
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	646 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	647 }
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	648
0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	649
6 c02d12eb34d4 added LoadNifti() Sebastien Jodogne <s.jodogne@gmail.com> parents: 4 diff changeset	650
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	651 void EncodeNifti(OrthancPluginRestOutput* output,
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	652 const char* url,
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	653 const OrthancPluginHttpRequest* request)
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	654 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	655 static const char* const KEY_NIFTI = "Nifti";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	656 static const char* const KEY_RESOLUTION = "Resolution";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	657 static const char* const KEY_PARENT_STUDY = "ParentStudy";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	658 static const char* const KEY_SMOOTH = "Smooth";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	659
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	660 if (request->method != OrthancPluginHttpMethod_Post)
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	661 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	662 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	663 return;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	664 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	665
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	666 Json::Value body;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	667 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	668 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	669 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	670 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	671
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	672 std::string mime, nifti;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	673 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI)))
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	674 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	675 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	676 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	677
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	678 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	679 const bool smooth = (body.isMember(KEY_SMOOTH) ?
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	680 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	681 true /* smooth by default */);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	682 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	683 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	684 256 /* default value */);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	685
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	686 vtkNew<vtkImageData> volume;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	687 VTKToolbox::LoadNifti(volume.Get(), nifti);
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	688
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	689 std::string stl;
32 976da5476810 reorganization Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	690 if (!VTKToolbox::EncodeVolume(stl, volume.Get(), resolution, smooth))
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	691 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	692 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI");
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	693 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	694 else
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	695 {
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	696 const std::string title = "STL model generated from NIfTI";
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	697
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	698 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	699
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	700 Json::Value answer;
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	701 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	702
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	703 std::string s = answer.toStyledString();
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	704 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	705 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	706 }
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	707
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	708
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	709 extern "C"
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	710 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	711 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	712 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	713 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	714
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	715 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	716 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	717 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	718 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	719 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	720 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	721 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	722 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	723 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	724 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	725 return -1;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	726 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	727
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	728 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	729 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	730 #else
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	731 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	732 #endif
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	733
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	734 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	735
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	736 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	737
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	738 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	739 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	740 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	741 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	742 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	743
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	744 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc.");
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	745
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	746 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
3 0fb06c6a6c87 added route "/instances/{id}/stl" Sebastien Jodogne <s.jodogne@gmail.com> parents: 2 diff changeset	747 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	748 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	749
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	750 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	751 {
8 d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	752 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true);
d1267c6c33e1 added route /stl/encode-nifti Sebastien Jodogne <s.jodogne@gmail.com> parents: 7 diff changeset	753 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true);
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	754 }
0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	755
31 ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	756 OrthancPlugins::OrthancConfiguration globalConfiguration;
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	757 OrthancPlugins::OrthancConfiguration configuration;
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	758 globalConfiguration.GetSection(configuration, "STL");
ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	759
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	760 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	761 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	762
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	763 {
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	764 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	765
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	766 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	767 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
31 ab231760799d added button to import STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 30 diff changeset	768 dictionary["SHOW_NIFTI_BUTTON"] = (configuration.GetBooleanValue("NIfTI", false) ? "true" : "false");
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	769 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	770
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	771 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer);
2 2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	772 }
2bdb9acb7dcf added STL viewer button at instance level too Sebastien Jodogne <s.jodogne@gmail.com> parents: 1 diff changeset	773
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	774 return 0;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	775 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	776
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	777
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	778 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	779 {
1 0f03a8a0bd6f encoding of RT-STRUCT as STL Sebastien Jodogne <s.jodogne@gmail.com> parents: 0 diff changeset	780 Orthanc::FinalizeFramework();
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	781 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	782
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	783
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	784 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	785 {
25 5fc3ea6acbd5 fix deprecated calls Sebastien Jodogne <s.jodogne@gmail.com> parents: 24 diff changeset	786 return ORTHANC_PLUGIN_NAME;
0 4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	787 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	788
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	789
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	790 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	791 {
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	792 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	793 }
4e889a8e8be2 initial commit of the viewer plugin Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	794 }

Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 38:970994058acd